Query 018160
Match_columns 360
No_of_seqs 177 out of 1096
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 06:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03034 phosphoglycerate kina 100.0 6E-111 1E-115 850.8 31.7 357 1-359 1-366 (481)
2 PLN02282 phosphoglycerate kina 100.0 9E-106 2E-110 801.8 29.0 289 71-359 3-291 (401)
3 PRK00073 pgk phosphoglycerate 100.0 3E-103 7E-108 781.0 29.2 282 76-359 2-283 (389)
4 COG0126 Pgk 3-phosphoglycerate 100.0 1E-103 3E-108 778.4 25.3 275 72-354 4-282 (395)
5 cd00318 Phosphoglycerate_kinas 100.0 7E-103 1E-107 780.5 29.6 280 78-359 1-288 (397)
6 PF00162 PGK: Phosphoglycerate 100.0 5E-102 1E-106 772.2 26.0 282 77-359 1-288 (384)
7 PRK13962 bifunctional phosphog 100.0 4E-100 9E-105 797.3 29.9 284 75-359 3-287 (645)
8 PTZ00005 phosphoglycerate kina 100.0 1.6E-99 3E-104 759.8 29.7 280 69-354 2-301 (417)
9 KOG1367 3-phosphoglycerate kin 100.0 6E-100 1E-104 734.7 21.0 283 72-357 3-302 (416)
10 TIGR01663 PNK-3'Pase polynucle 90.3 9 0.0002 41.0 15.1 201 110-334 199-450 (526)
11 TIGR03590 PseG pseudaminic aci 89.7 17 0.00036 35.0 15.2 174 87-283 1-195 (279)
12 PRK05826 pyruvate kinase; Prov 80.6 9.9 0.00021 40.1 9.4 204 113-335 18-277 (465)
13 PRK04302 triosephosphate isome 74.0 37 0.0008 31.6 10.4 43 116-162 77-119 (223)
14 PRK02006 murD UDP-N-acetylmura 72.7 12 0.00026 38.9 7.3 53 249-301 377-430 (498)
15 PRK14994 SAM-dependent 16S rib 71.0 24 0.00052 34.9 8.7 150 110-271 70-237 (287)
16 PRK00683 murD UDP-N-acetylmura 69.0 18 0.00039 36.7 7.6 52 248-299 301-353 (418)
17 PRK06988 putative formyltransf 68.9 25 0.00053 34.9 8.3 80 112-195 13-93 (312)
18 TIGR00460 fmt methionyl-tRNA f 68.5 29 0.00062 34.3 8.7 82 113-195 12-94 (313)
19 COG0223 Fmt Methionyl-tRNA for 67.9 29 0.00063 34.9 8.6 48 113-161 13-61 (307)
20 cd04256 AAK_P5CS_ProBA AAK_P5C 67.7 12 0.00027 36.6 5.9 47 86-132 9-55 (284)
21 PRK00005 fmt methionyl-tRNA fo 66.2 36 0.00078 33.5 8.8 83 112-195 11-94 (309)
22 COG0761 lytB 4-Hydroxy-3-methy 65.6 26 0.00056 35.2 7.6 191 74-283 57-283 (294)
23 PRK06801 hypothetical protein; 61.8 1.5E+02 0.0034 29.3 12.3 153 114-302 87-244 (286)
24 PF13344 Hydrolase_6: Haloacid 60.8 30 0.00066 28.4 6.2 72 106-186 12-86 (101)
25 PRK02705 murD UDP-N-acetylmura 57.5 40 0.00086 34.3 7.6 43 259-301 348-391 (459)
26 PRK05337 beta-hexosaminidase; 55.8 51 0.0011 33.2 8.0 110 75-189 161-282 (337)
27 TIGR01486 HAD-SF-IIB-MPGP mann 55.7 14 0.00031 34.5 3.9 33 102-136 8-42 (256)
28 PRK03669 mannosyl-3-phosphogly 55.4 15 0.00033 34.7 4.0 44 102-152 16-61 (271)
29 PRK04308 murD UDP-N-acetylmura 54.2 42 0.00092 34.1 7.2 47 253-299 336-383 (445)
30 PRK04663 murD UDP-N-acetylmura 54.2 78 0.0017 32.3 9.2 43 258-300 337-380 (438)
31 TIGR02461 osmo_MPG_phos mannos 53.3 17 0.00037 33.9 3.9 33 102-136 8-41 (225)
32 COG0626 MetC Cystathionine bet 51.6 43 0.00093 34.8 6.8 69 112-189 89-158 (396)
33 PF08645 PNK3P: Polynucleotide 51.5 28 0.00061 31.0 4.8 51 112-162 33-86 (159)
34 smart00732 YqgFc Likely ribonu 50.8 28 0.00061 27.4 4.3 58 109-167 35-94 (99)
35 COG4100 Cystathionine beta-lya 49.8 29 0.00063 35.6 5.0 81 82-173 126-216 (416)
36 PRK08125 bifunctional UDP-gluc 49.4 83 0.0018 34.1 8.8 79 113-195 12-91 (660)
37 TIGR01656 Histidinol-ppas hist 49.2 28 0.0006 30.0 4.3 27 110-136 29-55 (147)
38 PRK13111 trpA tryptophan synth 48.0 2.7E+02 0.0059 27.0 12.8 160 110-299 73-236 (258)
39 cd04814 PA_M28_1 PA_M28_1: Pro 46.5 54 0.0012 29.3 5.8 58 74-133 37-99 (142)
40 PF10087 DUF2325: Uncharacteri 46.3 56 0.0012 26.5 5.5 39 277-334 41-79 (97)
41 PLN02716 nicotinate-nucleotide 46.0 28 0.0006 35.1 4.3 64 144-208 185-257 (308)
42 COG0647 NagD Predicted sugar p 45.8 60 0.0013 32.0 6.5 77 104-187 20-98 (269)
43 cd04822 PA_M28_1_3 PA_M28_1_3: 45.0 53 0.0011 29.7 5.6 60 75-136 38-102 (151)
44 cd06259 YdcF-like YdcF-like. Y 44.7 1.2E+02 0.0026 25.8 7.5 46 285-330 35-94 (150)
45 cd07410 MPP_CpdB_N Escherichia 44.1 60 0.0013 30.9 6.1 52 111-162 170-223 (277)
46 PRK03803 murD UDP-N-acetylmura 44.1 93 0.002 31.7 7.9 43 259-301 344-387 (448)
47 PRK10530 pyridoxal phosphate ( 44.0 26 0.00056 32.5 3.6 23 112-136 24-46 (272)
48 PRK05581 ribulose-phosphate 3- 43.5 1E+02 0.0022 28.0 7.2 80 199-295 121-202 (220)
49 PRK01158 phosphoglycolate phos 43.3 32 0.0007 31.1 4.0 33 102-136 12-46 (230)
50 PRK10513 sugar phosphate phosp 42.4 37 0.00081 31.6 4.4 44 102-152 12-57 (270)
51 cd04820 PA_M28_1_1 PA_M28_1_1: 42.2 58 0.0013 29.0 5.3 53 75-131 40-93 (137)
52 TIGR01460 HAD-SF-IIA Haloacid 41.1 89 0.0019 29.2 6.7 77 102-186 7-87 (236)
53 cd00311 TIM Triosephosphate is 40.6 3.5E+02 0.0075 26.1 11.1 52 116-172 76-129 (242)
54 COG1433 Uncharacterized conser 40.3 47 0.001 29.1 4.3 78 84-184 33-110 (121)
55 PLN02285 methionyl-tRNA formyl 40.0 1.3E+02 0.0028 30.3 8.0 67 113-180 18-94 (334)
56 PLN02242 methionine gamma-lyas 39.6 3.3E+02 0.0071 28.0 11.0 194 116-337 107-305 (418)
57 KOG0781 Signal recognition par 39.4 43 0.00093 36.2 4.6 89 118-212 400-494 (587)
58 PRK10834 vancomycin high tempe 38.0 97 0.0021 30.1 6.5 62 254-315 39-122 (239)
59 PLN02461 Probable pyruvate kin 37.0 49 0.0011 35.6 4.7 102 113-218 35-148 (511)
60 TIGR03639 cas1_NMENI CRISPR-as 36.0 25 0.00053 34.4 2.1 57 82-138 13-73 (278)
61 PRK07812 O-acetylhomoserine am 36.0 2.2E+02 0.0048 29.6 9.2 111 116-236 100-219 (436)
62 PF00582 Usp: Universal stress 35.7 1.1E+02 0.0025 23.8 5.7 46 116-163 94-139 (140)
63 PRK08114 cystathionine beta-ly 35.5 2.1E+02 0.0045 29.5 8.8 105 116-230 93-200 (395)
64 PRK13982 bifunctional SbtC-lik 35.5 1.5E+02 0.0032 31.7 7.9 78 82-159 253-336 (475)
65 PRK06247 pyruvate kinase; Prov 35.4 38 0.00082 36.0 3.5 204 114-335 20-273 (476)
66 PF09587 PGA_cap: Bacterial ca 35.3 87 0.0019 29.5 5.7 51 110-162 170-221 (250)
67 cd06556 ICL_KPHMT Members of t 34.5 1.9E+02 0.0041 27.9 7.9 101 87-211 127-233 (240)
68 TIGR01087 murD UDP-N-acetylmur 34.2 1.4E+02 0.003 30.2 7.2 55 247-301 319-374 (433)
69 PF13793 Pribosyltran_N: N-ter 33.8 1E+02 0.0022 26.4 5.3 65 82-154 44-114 (116)
70 TIGR01664 DNA-3'-Pase DNA 3'-p 33.5 95 0.0021 27.7 5.3 49 104-154 34-86 (166)
71 PRK01033 imidazole glycerol ph 33.4 2.2E+02 0.0048 27.2 8.2 118 177-339 11-131 (258)
72 cd08162 MPP_PhoA_N Synechococc 33.1 44 0.00096 33.1 3.4 23 112-134 195-218 (313)
73 PRK10799 metal-binding protein 33.0 37 0.00081 32.4 2.8 45 116-165 199-243 (247)
74 PTZ00174 phosphomannomutase; P 32.8 55 0.0012 30.7 3.9 23 112-136 26-48 (247)
75 PRK02472 murD UDP-N-acetylmura 32.6 1.3E+02 0.0029 30.4 6.8 41 259-300 342-383 (447)
76 TIGR02463 MPGP_rel mannosyl-3- 32.6 52 0.0011 29.7 3.6 33 102-136 8-42 (221)
77 PRK12314 gamma-glutamyl kinase 32.1 1.1E+02 0.0023 29.7 5.8 47 86-133 10-56 (266)
78 cd07409 MPP_CD73_N CD73 ecto-5 31.6 50 0.0011 31.8 3.5 27 110-136 168-195 (281)
79 PRK01259 ribose-phosphate pyro 31.6 1.5E+02 0.0033 29.4 6.9 66 82-155 44-116 (309)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 31.5 1.6E+02 0.0034 26.8 6.4 61 74-136 39-104 (157)
81 TIGR01092 P5CS delta l-pyrroli 31.3 86 0.0019 34.8 5.6 52 85-137 7-62 (715)
82 PF04122 CW_binding_2: Putativ 31.0 2.7E+02 0.0058 22.0 7.6 79 103-189 2-82 (92)
83 PRK08187 pyruvate kinase; Vali 31.0 36 0.00079 36.3 2.6 107 107-217 134-264 (493)
84 COG0263 ProB Glutamate 5-kinas 30.9 94 0.002 32.2 5.3 53 85-138 6-67 (369)
85 PHA02530 pseT polynucleotide k 30.8 1E+02 0.0022 29.3 5.4 52 83-134 154-213 (300)
86 PF04015 DUF362: Domain of unk 30.8 3E+02 0.0065 24.9 8.3 109 87-222 1-116 (206)
87 cd01410 SIRT7 SIRT7: Eukaryoti 30.8 1.3E+02 0.0029 28.0 6.0 59 258-335 129-187 (206)
88 PRK13302 putative L-aspartate 30.8 83 0.0018 30.4 4.8 25 316-340 102-126 (271)
89 PRK14104 chaperonin GroEL; Pro 30.6 5.9E+02 0.013 27.4 11.5 151 146-301 231-424 (546)
90 cd07381 MPP_CapA CapA and rela 30.0 83 0.0018 29.2 4.5 31 106-137 157-188 (239)
91 PRK00553 ribose-phosphate pyro 29.3 2E+02 0.0043 29.0 7.4 65 82-154 53-124 (332)
92 TIGR02321 Pphn_pyruv_hyd phosp 29.3 5.8E+02 0.013 25.4 11.9 180 118-302 29-246 (290)
93 PRK08227 autoinducer 2 aldolas 29.1 64 0.0014 31.7 3.7 51 249-313 182-232 (264)
94 PLN02762 pyruvate kinase compl 29.0 61 0.0013 34.8 3.8 100 114-218 40-153 (509)
95 TIGR01163 rpe ribulose-phospha 28.9 3E+02 0.0065 24.6 7.8 79 199-295 116-197 (210)
96 PRK15126 thiamin pyrimidine py 28.4 72 0.0016 29.9 3.9 34 102-137 11-46 (272)
97 COG0066 LeuD 3-isopropylmalate 28.1 23 0.00049 33.5 0.4 55 184-244 41-103 (191)
98 smart00854 PGA_cap Bacterial c 28.1 1.3E+02 0.0028 28.1 5.5 52 109-162 158-210 (239)
99 PRK10017 colanic acid biosynth 28.0 5.6E+02 0.012 26.7 10.6 28 107-134 256-283 (426)
100 PRK14138 NAD-dependent deacety 27.9 1.5E+02 0.0033 28.3 6.0 60 257-335 151-210 (244)
101 cd07405 MPP_UshA_N Escherichia 27.8 62 0.0013 31.4 3.4 26 110-135 159-185 (285)
102 PLN02645 phosphoglycolate phos 27.7 3.9E+02 0.0083 26.1 8.9 86 201-305 20-110 (311)
103 TIGR01470 cysG_Nterm siroheme 27.7 78 0.0017 29.4 3.9 34 82-131 6-39 (205)
104 PRK03958 tRNA 2'-O-methylase; 27.5 87 0.0019 29.3 4.1 49 223-289 79-127 (176)
105 PF00702 Hydrolase: haloacid d 27.4 1.4E+02 0.0029 26.1 5.2 64 112-186 131-201 (215)
106 PF00224 PK: Pyruvate kinase, 27.2 1.8E+02 0.0039 29.4 6.7 75 246-335 202-279 (348)
107 PRK09424 pntA NAD(P) transhydr 27.2 70 0.0015 34.3 3.9 128 105-245 11-142 (509)
108 PLN02765 pyruvate kinase 27.1 72 0.0016 34.5 4.0 100 114-217 43-153 (526)
109 cd01409 SIRT4 SIRT4: Eukaryoti 27.0 1.3E+02 0.0028 29.2 5.4 59 257-334 177-235 (260)
110 COG0313 Predicted methyltransf 27.0 6E+02 0.013 25.4 10.0 157 106-271 59-228 (275)
111 TIGR01261 hisB_Nterm histidino 26.8 1.1E+02 0.0023 27.4 4.5 24 111-134 32-55 (161)
112 cd00408 DHDPS-like Dihydrodipi 26.5 2E+02 0.0043 27.3 6.6 59 96-162 7-69 (281)
113 PF02421 FeoB_N: Ferrous iron 26.4 57 0.0012 29.4 2.7 68 104-175 85-153 (156)
114 PRK03815 murD UDP-N-acetylmura 26.1 3.1E+02 0.0068 28.0 8.3 44 258-301 297-341 (401)
115 PRK14031 glutamate dehydrogena 25.9 99 0.0021 32.7 4.7 63 263-326 337-405 (444)
116 TIGR01452 PGP_euk phosphoglyco 25.8 2.3E+02 0.0049 27.1 6.8 77 101-186 10-91 (279)
117 PRK09250 fructose-bisphosphate 25.6 81 0.0018 32.4 3.8 71 245-329 264-343 (348)
118 PF13606 Ank_3: Ankyrin repeat 25.5 44 0.00095 21.7 1.3 15 113-127 14-28 (30)
119 PF13241 NAD_binding_7: Putati 25.0 46 0.001 27.2 1.7 35 81-131 3-37 (103)
120 PRK14106 murD UDP-N-acetylmura 25.0 2.9E+02 0.0062 28.0 7.7 41 260-300 347-388 (450)
121 cd07406 MPP_CG11883_N Drosophi 25.0 79 0.0017 30.0 3.5 27 110-136 157-184 (257)
122 PRK04690 murD UDP-N-acetylmura 24.9 2.8E+02 0.0061 28.8 7.8 38 259-296 346-385 (468)
123 PF04127 DFP: DNA / pantothena 24.6 1.7E+02 0.0036 27.1 5.4 74 83-156 1-80 (185)
124 PLN02369 ribose-phosphate pyro 24.6 3E+02 0.0065 27.3 7.5 66 82-155 35-107 (302)
125 PRK06354 pyruvate kinase; Prov 24.6 90 0.002 34.1 4.2 203 114-335 23-282 (590)
126 PF02875 Mur_ligase_C: Mur lig 24.5 82 0.0018 24.8 3.0 35 258-292 39-79 (91)
127 KOG2007 Cysteinyl-tRNA synthet 24.5 54 0.0012 35.5 2.5 82 130-215 68-176 (586)
128 PRK10444 UMP phosphatase; Prov 24.3 2.3E+02 0.0051 26.9 6.6 46 108-161 17-62 (248)
129 COG0370 FeoB Fe2+ transport sy 24.1 93 0.002 34.5 4.2 79 103-184 87-168 (653)
130 PLN02417 dihydrodipicolinate s 24.0 3.9E+02 0.0085 25.8 8.1 117 95-219 10-135 (280)
131 TIGR01064 pyruv_kin pyruvate k 24.0 1E+02 0.0022 32.5 4.4 101 115-219 17-129 (473)
132 cd02801 DUS_like_FMN Dihydrour 23.9 2.1E+02 0.0046 26.0 6.0 80 256-342 51-131 (231)
133 PTZ00409 Sir2 (Silent Informat 23.9 1.8E+02 0.0039 28.5 5.8 59 257-334 172-230 (271)
134 PTZ00114 Heat shock protein 60 23.7 9.3E+02 0.02 25.9 12.1 40 260-301 387-436 (555)
135 PRK02269 ribose-phosphate pyro 23.6 3.7E+02 0.008 26.9 8.1 66 82-155 49-121 (320)
136 PRK01045 ispH 4-hydroxy-3-meth 23.5 3.3E+02 0.0071 27.4 7.6 195 73-281 55-279 (298)
137 KOG3350 Uncharacterized conser 23.3 1.3E+02 0.0028 28.8 4.4 50 81-131 110-172 (217)
138 COG0561 Cof Predicted hydrolas 23.3 1.1E+02 0.0024 28.4 4.1 33 102-136 12-46 (264)
139 PRK06718 precorrin-2 dehydroge 23.3 1.1E+02 0.0023 28.4 4.0 34 82-131 7-40 (202)
140 COG3457 Predicted amino acid r 23.3 3E+02 0.0065 28.4 7.3 95 86-186 119-228 (353)
141 TIGR03297 Ppyr-DeCO2ase phosph 23.2 4.5E+02 0.0097 26.9 8.6 151 127-281 83-261 (361)
142 PF05368 NmrA: NmrA-like famil 23.2 66 0.0014 29.2 2.5 56 273-344 53-108 (233)
143 TIGR01365 serC_2 phosphoserine 23.2 3.5E+02 0.0075 27.7 7.9 92 188-299 4-97 (374)
144 PRK06719 precorrin-2 dehydroge 23.0 1.2E+02 0.0025 27.1 4.0 35 81-131 9-43 (157)
145 smart00518 AP2Ec AP endonuclea 22.9 3.7E+02 0.0079 25.1 7.5 59 111-190 84-142 (273)
146 PRK13402 gamma-glutamyl kinase 22.9 1.8E+02 0.0038 29.9 5.7 46 86-132 6-51 (368)
147 PTZ00340 O-sialoglycoprotein e 22.6 1.1E+02 0.0023 31.4 4.0 39 287-344 267-305 (345)
148 cd03416 CbiX_SirB_N Sirohydroc 22.6 1.3E+02 0.0027 24.1 3.8 77 127-206 2-85 (101)
149 cd07408 MPP_SA0022_N Staphyloc 22.4 98 0.0021 29.2 3.6 28 110-137 156-185 (257)
150 TIGR01390 CycNucDiestase 2',3' 22.1 1.7E+02 0.0036 32.1 5.6 52 110-162 181-233 (626)
151 TIGR01482 SPP-subfamily Sucros 22.0 1E+02 0.0023 27.6 3.6 34 101-136 6-41 (225)
152 PF06414 Zeta_toxin: Zeta toxi 21.9 2.3E+02 0.0049 25.6 5.7 38 257-294 11-51 (199)
153 cd07412 MPP_YhcR_N Bacillus su 21.7 1.1E+02 0.0023 29.7 3.7 28 110-137 177-205 (288)
154 CHL00093 groEL chaperonin GroE 21.6 6.6E+02 0.014 26.8 9.9 40 260-301 373-423 (529)
155 COG0469 PykF Pyruvate kinase [ 21.5 1.1E+02 0.0025 32.6 4.1 202 113-334 19-278 (477)
156 PRK01390 murD UDP-N-acetylmura 21.4 3.4E+02 0.0073 27.8 7.5 42 260-301 354-395 (460)
157 PRK07199 phosphoribosylpyropho 21.3 3.4E+02 0.0074 26.9 7.2 64 82-154 46-116 (301)
158 TIGR01530 nadN NAD pyrophospha 21.3 91 0.002 33.3 3.4 27 110-136 168-195 (550)
159 COG0737 UshA 5'-nucleotidase/2 21.3 98 0.0021 32.5 3.6 30 108-137 187-217 (517)
160 PRK00311 panB 3-methyl-2-oxobu 21.2 2E+02 0.0043 28.3 5.4 81 106-212 156-239 (264)
161 TIGR00222 panB 3-methyl-2-oxob 21.2 2.3E+02 0.0051 27.9 5.9 81 106-212 155-238 (263)
162 PRK14558 pyrH uridylate kinase 21.1 2.1E+02 0.0045 26.8 5.4 46 86-131 1-46 (231)
163 PRK00103 rRNA large subunit me 20.9 61 0.0013 29.3 1.8 41 253-298 91-131 (157)
164 TIGR03609 S_layer_CsaB polysac 20.9 3.3E+02 0.007 25.9 6.8 27 107-133 187-214 (298)
165 PF03192 DUF257: Pyrococcus pr 20.8 81 0.0018 29.9 2.6 49 173-222 3-52 (210)
166 COG0362 Gnd 6-phosphogluconate 20.8 1E+02 0.0023 32.6 3.6 49 247-295 57-105 (473)
167 PF01408 GFO_IDH_MocA: Oxidore 20.6 99 0.0022 24.9 2.8 54 278-334 54-117 (120)
168 PF06838 Met_gamma_lyase: Meth 20.6 1.3E+02 0.0027 31.6 4.1 66 96-172 134-204 (403)
169 COG4122 Predicted O-methyltran 20.5 76 0.0016 30.4 2.4 67 150-216 123-198 (219)
170 PRK12702 mannosyl-3-phosphogly 20.4 1.1E+02 0.0024 30.9 3.6 33 102-136 10-44 (302)
171 PF04131 NanE: Putative N-acet 20.4 2.2E+02 0.0048 27.0 5.4 98 107-214 47-147 (192)
172 TIGR01082 murC UDP-N-acetylmur 20.4 4.6E+02 0.0099 26.8 8.2 34 258-291 343-379 (448)
173 cd00614 CGS_like CGS_like: Cys 20.2 6.2E+02 0.014 25.0 8.9 102 111-222 66-168 (369)
174 PRK12360 4-hydroxy-3-methylbut 20.2 2.3E+02 0.0049 28.2 5.7 192 76-281 61-278 (281)
No 1
>PLN03034 phosphoglycerate kinase; Provisional
Probab=100.00 E-value=5.8e-111 Score=850.83 Aligned_cols=357 Identities=84% Similarity=1.180 Sum_probs=318.8
Q ss_pred CCCCCCcccccccccccccc--------ccCCCcccccCCcchhhccccC-cCCchhhhhhhhhhhccccccchhhhhcc
Q 018160 1 MASATAPTTLSLVKTAASSS--------LSSPRASFLRMPTSASRRLGFS-AADPLLTCHVASRLSSIKTKGTRAVVSMA 71 (360)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (360)
|+++++|+.+++...++.+. ..+.++..++..+++.+ +++ ++|+..+.+.+.++++......+....|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 78 (481)
T PLN03034 1 MASAAAPTALSLLKSTAAAASTAASRASLLPVPSTGLSATSLRRL--GFSAAADSRFSVHVASKVRSFRGKGSRGVVSMA 78 (481)
T ss_pred CccccccchhhhhhhhhhhhhhccccccccccccccccccCcccc--chhcccCccchhhhhhhhccchhcCcchhhhcc
Confidence 78888888888764443221 11122333333444444 554 57899999998888777333333333566
Q ss_pred cccccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHH
Q 018160 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPR 151 (360)
Q Consensus 72 ~~~i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~ 151 (360)
+++++|+++.|++|||||||||||||++++|+|+||+||++++|||+||+++||||||+||||||+|.++++||+|||++
T Consensus 79 ~~tl~d~~~~dl~GK~VlvRvD~NvPi~~~g~I~Dd~RI~a~lpTI~~L~~~gakvVl~SHlGRPkg~~~~~SL~pva~~ 158 (481)
T PLN03034 79 KKSVGDLTSADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLVPR 158 (481)
T ss_pred cCcHhhcchhhcCCCEEEEEeccCCCcCCCCcccChHhHHHHHHHHHHHHHCCCeEEEEEecCCCCCCCcccCHHHHHHH
Confidence 77888888789999999999999999976689999999999999999999999999999999999987789999999999
Q ss_pred HHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcchhcc
Q 018160 152 LSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGV 231 (360)
Q Consensus 152 Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi 231 (360)
|+++||++|.|++||+|++++++|++|++|||+||||+|||+||++||++|+++||+++|+|||||||++||+|||++||
T Consensus 159 Ls~lL~~~V~fv~d~~G~~~~~~i~~l~~GeVlLLENvRF~~eE~~nd~~fa~~LA~l~DiyVNDAFgtaHR~haS~vGi 238 (481)
T PLN03034 159 LSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGV 238 (481)
T ss_pred HHHHhCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccCcHHHHHHHHhhCCEEEecchhhhHhcccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccc
Q 018160 232 TKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLV 311 (360)
Q Consensus 232 ~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~Slv 311 (360)
++|++|+|+|+||||||++|.+++++|+||+++|+||+||||||++|+||++|||+||+||+|+||||+|+|++||+|++
T Consensus 239 ~~~l~ps~aG~LmekEl~~L~k~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slv 318 (481)
T PLN03034 239 TKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLV 318 (481)
T ss_pred hhhcCcchhhHHHHHHHHHHHHHHcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcchhhc
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018160 312 EEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY 359 (360)
Q Consensus 312 E~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~ 359 (360)
|++.++.|++||++++++|++|+||+||+|+++|+.+++.+++++++|
T Consensus 319 E~d~i~~A~~il~~a~~~gv~I~lPvD~v~a~~~~~~~~~~~~~~~~I 366 (481)
T PLN03034 319 EEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAI 366 (481)
T ss_pred ChhhhHHHHHHHHHHHhcCCEEECCceEEEecccCCCCCeEEeehhcC
Confidence 999999999999999999999999999999999998887777766554
No 2
>PLN02282 phosphoglycerate kinase
Probab=100.00 E-value=8.7e-106 Score=801.79 Aligned_cols=289 Identities=85% Similarity=1.239 Sum_probs=279.2
Q ss_pred ccccccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHH
Q 018160 71 AKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVP 150 (360)
Q Consensus 71 ~~~~i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~ 150 (360)
.|+++.+|+|+|++|||||||||||||++++|+|+||+||++++|||+||+++||||||+||||||+|.++++||+|||+
T Consensus 3 ~~~~~~ti~d~d~~gK~VlvRvD~NvPi~~~g~I~dd~RI~a~lpTI~~l~~~gakvVl~SHlGRP~g~~~~~SL~~va~ 82 (401)
T PLN02282 3 TKRSVGTLKEADLKGKRVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGARVILCSHLGRPKGVTPKYSLKPLVP 82 (401)
T ss_pred cccccCChhHhhccCCEEEEEeecCCccCCCCcccCcHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCcccCHHHHHH
Confidence 46789999999999999999999999997558999999999999999999999999999999999998777999999999
Q ss_pred HHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcchhc
Q 018160 151 RLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEG 230 (360)
Q Consensus 151 ~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~g 230 (360)
+|+++|+++|.|++||+|++++++|++|++|||+||||+|||+||++|+++|+++||++||+|||||||+|||+|||++|
T Consensus 83 ~Ls~lL~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~RF~~~E~~~~~~~a~~LA~l~DvyVNDAFg~aHR~haS~~g 162 (401)
T PLN02282 83 RLSELLGVEVVMANDCIGEEVEKLVAELPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHASTEG 162 (401)
T ss_pred HHHHHHCCCeEECCCCCCHHHHHHHhcCCCCCEEEEeccccCcccccCHHHHHHHHHHhCcEeeechhhhhhhcccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCcccccc
Q 018160 231 VTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSL 310 (360)
Q Consensus 231 i~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~Sl 310 (360)
|++|++|+|||+||||||++|.+++++|+||+++|+||+||||||++|+||+++||+||+||+||||||+|+|++||+|+
T Consensus 163 i~~~l~~~~aG~lmekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~iG~sl 242 (401)
T PLN02282 163 VAKYLKPSVAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSL 242 (401)
T ss_pred hhhhcCccccchHHHHHHHHHHHHhcCCCCCeEEEEcCCcHHhHHHHHHHHHHhhhhheeccHHHHHHHHHcCCCcChhh
Confidence 99999779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018160 311 VEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY 359 (360)
Q Consensus 311 vE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~ 359 (360)
+|++.++.|++||++|+++|++|+||+|++|+++|+.+.+.++++++++
T Consensus 243 ~e~d~i~~a~~il~~a~~~g~~I~lPvD~v~~~~~~~~~~~~~~~~~~i 291 (401)
T PLN02282 243 VEEDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKVVPASAI 291 (401)
T ss_pred cChhhHHHHHHHHHHHHhcCCEEeCCceEEEecccCCCCCeEEeehhcC
Confidence 9999999999999999999999999999999999998877777665554
No 3
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=100.00 E-value=3.4e-103 Score=780.97 Aligned_cols=282 Identities=63% Similarity=0.964 Sum_probs=270.7
Q ss_pred cCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHH
Q 018160 76 GELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSEL 155 (360)
Q Consensus 76 ~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~l 155 (360)
.+|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||||||+||||||+|.++++||+|||++|+++
T Consensus 2 ~tl~d~d~~gK~VlvRvD~NvPi~~-g~I~dd~RI~~~lpTI~~l~~~gakvvl~sH~gRP~g~~~~~SL~~va~~L~~l 80 (389)
T PRK00073 2 KTLDDLDLKGKRVLVRVDFNVPVKD-GKITDDTRIRAALPTIKYLLEKGAKVILLSHLGRPKGEDPEFSLAPVAKRLSEL 80 (389)
T ss_pred CchHHcccCCCEEEEEeccCCCCcC-CcCCChHhHHHHHHHHHHHHHCCCeEEEEEecCCCCCCCCCcCHHHHHHHHHHH
Confidence 3556669999999999999999974 899999999999999999999999999999999998866789999999999999
Q ss_pred hCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcchhcccccc
Q 018160 156 LGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYL 235 (360)
Q Consensus 156 Lg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi~~~l 235 (360)
|+++|+|++||+|++++++|++|++|||+||||+|||+||++||++|+++||+|||+|||||||++||+|||++||++++
T Consensus 81 L~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~Rf~~~E~~~d~~~a~~LA~l~DiyVNDAFg~aHR~haS~vgi~~~l 160 (389)
T PRK00073 81 LGKEVKFVDDCIGEEAREAIAALKDGEVLLLENVRFNKGEEKNDPELAKKLASLGDVFVNDAFGTAHRAHASTVGIAKFL 160 (389)
T ss_pred hCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccCHHHHHHHHHHhCCEEEECchhhhhhcccchhchhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccccccc
Q 018160 236 KPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDK 315 (360)
Q Consensus 236 ~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~d~ 315 (360)
+++|+|+||||||++|.+++++|+||+++|+||+||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.
T Consensus 161 p~~~aG~lmekEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~~~D~liigG~ma~tFl~A~G~~ig~sl~e~~~ 240 (389)
T PRK00073 161 KPAAAGFLMEKELEALGKALENPERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDL 240 (389)
T ss_pred chhhhhHHHHHHHHHHHHHhcCCCCCeEEEEcCccHHhHHHHHHHHHHhhhhheeChHHHHHHHHHcCCCcChhhcchhh
Confidence 66999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018160 316 LDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY 359 (360)
Q Consensus 316 i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~ 359 (360)
++.|++||++++++|++|+||+|++|+++|+ +++..+++.+++
T Consensus 241 i~~a~~il~~a~~~~~~i~lPvD~vv~~~~~-~~~~~~~~~~~i 283 (389)
T PRK00073 241 IDTAKELLEKAKEKGVKIPLPVDVVVAKEFS-DAEATVVSVDEI 283 (389)
T ss_pred HHHHHHHHHHHHhcCCEEECCCeeEEeeccC-CCceEEeEcccC
Confidence 9999999999999999999999999999998 666666666554
No 4
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-103 Score=778.43 Aligned_cols=275 Identities=63% Similarity=0.945 Sum_probs=263.9
Q ss_pred cccccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHH
Q 018160 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPR 151 (360)
Q Consensus 72 ~~~i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~ 151 (360)
++++.+. +++|||||||||||||+++ |+|+||+||++++|||+||+++||+|||+||||||+++++++||+|||++
T Consensus 4 ~~~~~d~---~~~gK~VlvRvD~NvP~~d-G~I~dd~RI~a~lpTIk~l~~~ga~Vvl~SHlGRPk~~~~~~SL~pva~~ 79 (395)
T COG0126 4 KKTILDL---DLAGKRVLVRVDFNVPVDD-GKITDDTRIRAALPTIKYLLEKGAKVVLLSHLGRPKEYSDKTSLEPVAKR 79 (395)
T ss_pred cchhhhh---cccCCEEEEEeccCCcccC-CeeCCcHHHHHhhHHHHHHHhCCCeEEEEecCCCCCCCCCcccHHHHHHH
Confidence 4444443 6999999999999999986 99999999999999999999999999999999999887899999999999
Q ss_pred HHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHH----HHHHHhhcCCeeeecccccccccCcc
Q 018160 152 LSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPE----FAKKLASLADLYVNDAFGTAHRAHAS 227 (360)
Q Consensus 152 Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~----fa~~LA~l~DvyVNDAFgtaHRahAS 227 (360)
|+++||++|+|++||+|++++++|++|++|||+||||+|||+||++||++ |+++||+|||+|||||||||||+|||
T Consensus 80 Ls~ll~~~V~f~~d~~g~~a~~~v~~l~~GevlLLEN~RF~~~E~~~d~~~~~~l~k~la~l~DvfVnDAFgtAHRahaS 159 (395)
T COG0126 80 LSELLGKEVKFVDDCVGPEARQAVAELKDGEVLLLENVRFYSEEEKNDEEARTELVKKLASLGDVFVNDAFGTAHRAHAS 159 (395)
T ss_pred HHHhcCCceEecccccCHHHHHHHhccCCCcEEEEeeccccccccCcchhhHHHHHHHHHhhcCEEEechhHHHHhhccc
Confidence 99999999999999999999999999999999999999999999988766 99999999999999999999999999
Q ss_pred hhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccc
Q 018160 228 TEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVG 307 (360)
Q Consensus 228 ~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG 307 (360)
++|+++++ |+|+|+||||||++|++++++|+||+++|+||+||||||+||+||+++||+|||||+||||||+|+|++||
T Consensus 160 ~~g~~~~l-ps~aG~LmekEl~~L~k~l~~p~rP~vaIlGGaKVsdki~vienLl~kaD~liigGgma~tFl~A~G~~vG 238 (395)
T COG0126 160 TVGFAKFL-PSAAGFLMEKELDALGKALENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYDVG 238 (395)
T ss_pred hhhhhhhc-hhhhhHHHHHHHHHHHHHhcCCCCceEEEeeccccchHHHHHHHHHHhcCeEEecchHHHHHHHHhccccc
Confidence 99999998 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEe
Q 018160 308 SSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354 (360)
Q Consensus 308 ~SlvE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~ 354 (360)
+|++|++.++.||+||+++++ +|+||+|++|+++|+.++....+
T Consensus 239 ~sl~E~~~~~~Ak~ll~k~~~---~I~lPvD~~v~~~f~~~~~~~~~ 282 (395)
T COG0126 239 KSLVEFDLIDGAKELLEKAKD---KIVLPVDVVVAKEFSRDAPATVK 282 (395)
T ss_pred hHHHHHHHHHHHHHHHHHhCC---cEECcceeEEccccccccccccc
Confidence 999999999999999999987 69999999999999999876655
No 5
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=100.00 E-value=6.8e-103 Score=780.51 Aligned_cols=280 Identities=64% Similarity=0.990 Sum_probs=270.2
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhhHHHHHHHh
Q 018160 78 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELL 156 (360)
Q Consensus 78 l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg-~~~~~SL~pva~~Ls~lL 156 (360)
|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||||||+||||||+| .++++||+|||++|+++|
T Consensus 1 i~d~~~~gK~VlvRvD~NvPi~~-g~I~dd~RI~a~lpTI~~l~~~gakvvl~SHlGRP~g~~~~~~SL~~va~~L~~lL 79 (397)
T cd00318 1 IDDLDLKGKRVLVRVDFNVPVDD-GKITDDTRIRAALPTIKYLLEQGAKVVLLSHLGRPKGEPNEKYSLAPVAKALSELL 79 (397)
T ss_pred CCccccCCCEEEEEeccCCCCcC-CeECChHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 45779999999999999999974 8999999999999999999999999999999999987 567899999999999999
Q ss_pred CCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccC-------cHHHHHHHhhcCCeeeecccccccccCcchh
Q 018160 157 GIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKN-------DPEFAKKLASLADLYVNDAFGTAHRAHASTE 229 (360)
Q Consensus 157 g~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~n-------d~~fa~~LA~l~DvyVNDAFgtaHRahAS~~ 229 (360)
|++|+|++||+|+.++++|++|++|||+||||+|||+||++| +++|+++||++||+|||||||+|||+|||++
T Consensus 80 ~~~V~f~~d~~g~~~~~~i~~l~~GeIlLLEN~RF~~~E~~~~~~e~~~~~~~a~~LA~l~DiyVNDAFg~aHR~haS~v 159 (397)
T cd00318 80 GQPVTFANDCVGPEAEEAVEALKPGDVLLLENVRFYPEEEGKRDDDKEADEEFAKKLASLGDVYVNDAFGTAHRAHASMV 159 (397)
T ss_pred CCCcEECCCCCCHHHHHHHhcCCCCcEEEEeccCccccccccCCcchhhHHHHHHHHHHhCCEEEEcchhhhhhcccchh
Confidence 999999999999999999999999999999999999999999 8899999999999999999999999999999
Q ss_pred ccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccc
Q 018160 230 GVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSS 309 (360)
Q Consensus 230 gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~S 309 (360)
||++++ |+|+|+||||||++|.+++++|+||+++|+||+||||||++|+||+++||+||+||+||||||+|+|++||+|
T Consensus 160 gi~~~~-~~~aG~lmekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFL~A~G~~iG~s 238 (397)
T cd00318 160 GIALLL-PSAAGFLMEKELKYLAKALENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKS 238 (397)
T ss_pred hhhhhh-hhhHHHHHHHHHHHHHHHHcCCCCCeEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCcc
Confidence 999977 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018160 310 LVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY 359 (360)
Q Consensus 310 lvE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~ 359 (360)
++|++.++.|++||++|+++|++|+||+|++|+++|+.+.+..+++++++
T Consensus 239 l~e~~~i~~a~~il~~a~~~~~~I~lPvD~~v~~~~~~~~~~~~~~~~~i 288 (397)
T cd00318 239 LFEEDGIELAKSLLEKAKAKGVKIVLPVDVVVADKFKADANTKVVTDDGI 288 (397)
T ss_pred ccChhhHHHHHHHHHHhHhcCCEEECCceEEEeeccCCCCceEEEecccC
Confidence 99999999999999999999999999999999999998877777766554
No 6
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=100.00 E-value=5.2e-102 Score=772.24 Aligned_cols=282 Identities=61% Similarity=0.940 Sum_probs=253.1
Q ss_pred CccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCC--CCCCCChhhhHHHHHH
Q 018160 77 ELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG--VTPKFSLAPLVPRLSE 154 (360)
Q Consensus 77 ~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg--~~~~~SL~pva~~Ls~ 154 (360)
||+|+|++|||||||||||||++ +|+|+||+||++++|||+||+++||||||+||||||+| +++++||+|||++|++
T Consensus 1 Ti~d~d~~gK~VlvRvD~NvPi~-~g~I~Dd~RI~~~lpTI~~l~~~gakvVl~sH~GRPk~~~~~~~~SL~~va~~L~~ 79 (384)
T PF00162_consen 1 TIDDLDLKGKRVLVRVDFNVPIK-NGKITDDTRIRAALPTIKYLLEKGAKVVLMSHLGRPKGKGYDDFFSLEPVAERLSK 79 (384)
T ss_dssp BGGGS--TTEEEEEEE-----EE-TTEES-THHHHHHHHHHHHHHHTTEEEEEE---SSTTTSSSTGGG-SHHHHHHHHH
T ss_pred CccccCcCCCEEEEEeCCCCCcC-CCcCCCcchHHHHHHHHHHHHhcCCeEEEEeccCCcccCCCCcccChHHHHHHHHH
Confidence 46778999999999999999995 68999999999999999999999999999999999984 7889999999999999
Q ss_pred HhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccc----cCcHHHHHHHhhcCCeeeecccccccccCcchhc
Q 018160 155 LLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE----KNDPEFAKKLASLADLYVNDAFGTAHRAHASTEG 230 (360)
Q Consensus 155 lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~----~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~g 230 (360)
+||++|.|++||+|++++++|++|++|||+||||+|||+||+ +|++.|+++||++||+|||||||++||+|||++|
T Consensus 80 ~L~~~V~f~~d~~g~~~~~~i~~l~~G~IllLENlRf~~eE~~~~~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vg 159 (384)
T PF00162_consen 80 LLGKPVKFVDDCIGEEAEEAIESLKPGEILLLENLRFYPEEEGKKEKNDTEFARKLASLADVYVNDAFGTAHRAHASTVG 159 (384)
T ss_dssp HHTSEEEEESTSSSHHHHHHHHTSSTTEEEEESSGGGSTTTTSEEHHTHHHHHHHHHTT-SEEEEESGGGTTS--TTTTT
T ss_pred HhCCCeeeccccCCHHHHHHHhccCCCCEEEEeeeccccccccccccccHHHHHHHHHhCCEEEEcCccchhcCCCCccc
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred cccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCcccccc
Q 018160 231 VTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSL 310 (360)
Q Consensus 231 i~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~Sl 310 (360)
||++++|+|||+||||||++|++++++|+|||++|+||+||||||++|++|+++||+|++||+||||||+|+|++||+|+
T Consensus 160 i~~~l~ps~aG~lmekEl~~L~~~~~~~~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFl~A~G~~iG~s~ 239 (384)
T PF00162_consen 160 IPKFLKPSAAGFLMEKELEALSKVLENPKRPFVAILGGAKVSDKIGVLENLLDKVDKLIIGGGMANTFLKAQGYEIGKSL 239 (384)
T ss_dssp GGGTSSEEEE-HHHHHHHHHHHHHHHS-SSSEEEEEESS-HHHHHHHHHHHTTTSSEEEEETTHHHHHHHHTTHBBTTSS
T ss_pred chhccchhhHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCchHhHHHHHHHHHHHHHHHeeChhHHHHHHHHcCCcccccc
Confidence 99999899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018160 311 VEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY 359 (360)
Q Consensus 311 vE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~ 359 (360)
+|++.++.|++||++++++||+|+||+|++|+++|+.+++.++++.+++
T Consensus 240 ~e~~~i~~a~~ll~~~~~~g~~i~lPvD~~v~~~~~~~~~~~~~~~~~i 288 (384)
T PF00162_consen 240 VEEDLIEEAKELLEKAKDRGVKIVLPVDFVVADEFSDGARVEVVPADEI 288 (384)
T ss_dssp CHGGGHHHHHHHHHHHHHTT-EEE--SEEEEESSSSTTSCEEEEETTGB
T ss_pred hhhhhHHHHHHHHHHHHhcCceEEEEEEEeehhcccCCCCcEecccccc
Confidence 9999999999999999999999999999999999999998887776654
No 7
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=100.00 E-value=4.3e-100 Score=797.27 Aligned_cols=284 Identities=67% Similarity=1.005 Sum_probs=272.8
Q ss_pred ccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhhHHHHH
Q 018160 75 VGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLS 153 (360)
Q Consensus 75 i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg-~~~~~SL~pva~~Ls 153 (360)
+.+|+|+|++|||||||||||||++++|+|+||+||++++|||+||+++||||||+||||||+| .++++||+|||++|+
T Consensus 3 ~~ti~d~d~~gK~VlvRvD~NvP~~~~g~i~dd~RI~~~lpTI~~l~~~gakvvl~SH~gRP~~~~~~~~SL~~va~~L~ 82 (645)
T PRK13962 3 KKTIRDIDVKGKRVIVRVDFNVPLDENGNITDDTRIRAALPTIKYLLDHGAKVILVSHLGRPKGEFDPKFSMAPVAKRLS 82 (645)
T ss_pred CCchhhhccCCCEEEEEecCCCCcCCCCcCCCcHhHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCccCCHHHHHHHHH
Confidence 4456666999999999999999996358999999999999999999999999999999999997 577999999999999
Q ss_pred HHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcchhcccc
Q 018160 154 ELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233 (360)
Q Consensus 154 ~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi~~ 233 (360)
++||++|+|++||+|++++++|++|++|||+||||+|||+||++||++|+++||+|||+|||||||||||+|||++||++
T Consensus 83 ~~L~~~V~f~~d~~g~~~~~~i~~l~~GeilLLEN~Rf~~~E~~~d~~~~~~LA~l~DvyVNDAFg~aHR~haS~~gi~~ 162 (645)
T PRK13962 83 ELLGKEVIFAKDVIGDDAKKAVAQLKEGDVLLLENVRFHKEETKNDPEFAKELASLADIYVNDAFGTAHRAHASTAGVAE 162 (645)
T ss_pred HHHCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccCHHHHHHHHHHhCCEEEechhhhhhhcccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccccc
Q 018160 234 YLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEE 313 (360)
Q Consensus 234 ~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~ 313 (360)
++ |+|+|+||||||++|++++++|+||+++|+||+||||||++|+||+++||+||+||+||||||+|+|++||+|++|+
T Consensus 163 ~l-p~~aG~lmekEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~vl~~ll~~~D~iligG~ma~tFl~a~G~~ig~sl~e~ 241 (645)
T PRK13962 163 YL-PAVAGFLMEKEIEFLGKALANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEE 241 (645)
T ss_pred hh-hhhhhHHHHHHHHHHHHHHcCCCCceEEEEcCccHHhHHHHHHHHHHhCCEEEECcHHHHHHHHHcCCCCChhhcCh
Confidence 99 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018160 314 DKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY 359 (360)
Q Consensus 314 d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~ 359 (360)
+.++.|++||++|+++|++|+||+|++|+++|+.+++..+++.+++
T Consensus 242 ~~~~~a~~il~~a~~~~~~i~lPvD~~~~~~~~~~~~~~~~~~~~i 287 (645)
T PRK13962 242 DKLDLAKELLAKAEEKGVKLLLPVDSVVAKEFKNDAEHKVVPSDAI 287 (645)
T ss_pred hhHHHHHHHHHHHHhcCCEEECCcEEEeecccCCCCceEEEecccC
Confidence 9999999999999999999999999999999998888777665554
No 8
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=100.00 E-value=1.6e-99 Score=759.84 Aligned_cols=280 Identities=52% Similarity=0.857 Sum_probs=263.9
Q ss_pred hcccccccCccCCC--CCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCC-CCCCCC
Q 018160 69 SMAKKSVGELSGAD--LKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG-VTPKFS 144 (360)
Q Consensus 69 ~~~~~~i~~l~d~d--l~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk-VIl~SHlGRPkg-~~~~~S 144 (360)
+|++++|.+ +| ++|||||||||||||++ +|+|+||+||++++|||+||+++||| |||+||||||+| +++++|
T Consensus 2 ~~~~~ti~d---~~~~~~gK~VllRvD~NvPi~-~g~I~Dd~RI~~~lpTI~~L~~~gak~vvl~SHlGRP~g~~~~~~S 77 (417)
T PTZ00005 2 LSNKLGIDD---VDDQLKGKRVLIRVDFNVPIK-EGVIKDATRIKATLPTIKYLLEQGAKSVVLMSHLGRPDGRRVEKYS 77 (417)
T ss_pred CcccCcHHH---hhhccCCCEEEEEecCCCCCc-CCcCCChHhHHHHHHHHHHHHHCCCCEEEEEecCCCCCCCcCcccC
Confidence 344455554 57 99999999999999997 58999999999999999999999997 999999999987 677899
Q ss_pred hhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCcccccc-----------CcHH----HHHHHhhc
Q 018160 145 LAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEK-----------NDPE----FAKKLASL 209 (360)
Q Consensus 145 L~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~-----------nd~~----fa~~LA~l 209 (360)
|+|||++|+++||++|.|++||+|+.++++|++|++|||+||||||||+||++ ||++ |+++||+|
T Consensus 78 L~~va~~L~~lL~~~V~fv~d~~g~~~~~~i~~l~~GeVlLLENvRF~~~Ee~~~~~~~~~~~~~d~~~~~~fa~~LA~l 157 (417)
T PTZ00005 78 LKPVVPKLEELLGKKVTFLNDCVGPEVEEACANAKNGSVILLENLRFHIEEEGKGVDANGNKVKADKEEVKKFRKSLTKL 157 (417)
T ss_pred HHHHHHHHHHHHCCCeEECCCCCCHHHHHHHHcCCCCCEEEEeccccccccccccccccccccCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999985 5554 99999999
Q ss_pred CCeeeecccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeee
Q 018160 210 ADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILL 289 (360)
Q Consensus 210 ~DvyVNDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~ll 289 (360)
||+|||||||++||+|||++||++ +++|+|+||||||++|++++++|+||+++|+||+||||||++|+||+++||+|+
T Consensus 158 ~DiyVNDAFg~aHR~haS~~gi~~--~~s~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~vl~~Ll~k~D~il 235 (417)
T PTZ00005 158 GDIYVNDAFGTAHRAHSSMVGVDL--PVKVAGFLMKKELDYFSKALENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMI 235 (417)
T ss_pred CCEEEecchhhhhhhcccccccCC--ccchhhHHHHHHHHHHHHHhcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEE
Confidence 999999999999999999999997 348999999999999999999999999999999999999999999999999999
Q ss_pred echHHHHHHHHH-cCCccccccccccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEe
Q 018160 290 LGGGMIFTFYKA-QGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC 354 (360)
Q Consensus 290 iGG~ma~tFL~A-~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~ 354 (360)
+||+||||||+| +|++||+|++|++.++.|++||++|+++|++|+||+|++|+++|+.+.+..++
T Consensus 236 igG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I~lPvD~~v~~~~~~~~~~~~~ 301 (417)
T PTZ00005 236 IGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKVV 301 (417)
T ss_pred ECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEEeCCceEEEecccCCCCCeEEe
Confidence 999999999999 68999999999999999999999999999999999999999999988776554
No 9
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-100 Score=734.70 Aligned_cols=283 Identities=59% Similarity=0.902 Sum_probs=270.1
Q ss_pred cccccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCC-CCCCCChhhhH
Q 018160 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG-VTPKFSLAPLV 149 (360)
Q Consensus 72 ~~~i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk-VIl~SHlGRPkg-~~~~~SL~pva 149 (360)
..+..+|+++|++|||||+||||||||++ ++|||++||++++|||+|++++|+| |||+||||||+| +.++|||+|+|
T Consensus 3 ~~~klti~~~dl~GKrVf~RVDfNVPl~d-~~Itnn~RI~aalPtIky~l~~~~k~VvL~SHLGRP~G~~~~kySL~Pva 81 (416)
T KOG1367|consen 3 LSSKLTIDNLDLKGKRVFIRVDFNVPLKD-NKITNNQRIVAALPTIKYLLSNGAKSVVLMSHLGRPKGVRNKKYSLAPVA 81 (416)
T ss_pred cccccccccccccCcEEEEEEeccccccC-CeecccceeeecccHHHHHHhCCCcEEEEhhhcCCCCCCCCccccccchH
Confidence 44555666679999999999999999985 6899999999999999999999999 999999999999 69999999999
Q ss_pred HHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcH--------------HHHHHHhhcCCeeee
Q 018160 150 PRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDP--------------EFAKKLASLADLYVN 215 (360)
Q Consensus 150 ~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~--------------~fa~~LA~l~DvyVN 215 (360)
.+|+++||++|.|.+||+|+++++++++..+|.|+||||||||.|||++++ +|++.|++++|||||
T Consensus 82 ~eLk~lLg~~v~flddCvg~eVe~a~~~p~~G~viLLENlRfy~eEEg~~~~~~~~~~a~~~~v~~fr~~l~~l~DvyVn 161 (416)
T KOG1367|consen 82 PELKSLLGKEVVFLDDCVGPEVEKAVASPAPGSVILLENLRFYVEEEGKGKDDSGKKVADPAKVKEFRASLASLGDVYVN 161 (416)
T ss_pred HHHHHHhCcceeeecccccHHHHHHhcCCCCCcEEEeecceeehhhhcCCccccccccCCHHHHHHHHHHHHhhccEEee
Confidence 999999999999999999999999999999999999999999999997654 799999999999999
Q ss_pred cccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHH
Q 018160 216 DAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMI 295 (360)
Q Consensus 216 DAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma 295 (360)
|||||+||+|+||+|+..+ .+++||||+|||+|+.+++++|.|||+||+||+||+|||++|+||++|||.+|||||||
T Consensus 162 DAFGtaHRahsSm~g~~~~--~~~aGfLl~KEL~yf~kalenp~rPFlaIlGGaKVadKIqlI~nLldkv~~liigGGMa 239 (416)
T KOG1367|consen 162 DAFGTAHRAHSSMVGVGLP--QSAAGFLLQKELDYFAKALENPVRPFLAILGGAKVADKIQLIENLLDKVNELIIGGGMA 239 (416)
T ss_pred cccccchhccccccccCCc--hhhhhHHHHHHHHHHHHHHcCCCcchhhhhcCchhhhHHHHHHHHHhhcceEEEcCcee
Confidence 9999999999999999963 48999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCccccccccccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCC
Q 018160 296 FTFYKAQ-GISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLN 357 (360)
Q Consensus 296 ~tFL~A~-G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~ 357 (360)
|||||++ |.+||+|++|++..+.+++|+++|+++|++|+||+||++++.|+++++++.++..
T Consensus 240 ftFlKvl~~~eiG~Sl~de~g~e~v~~l~~kak~~~v~i~lPvDfv~adkf~~da~s~~~ta~ 302 (416)
T KOG1367|consen 240 FTFLKVLNGMEIGKSLFDEEGAEIVKDLMEKAKAKGVRILLPVDFVIADKFAEDANSKQVTAE 302 (416)
T ss_pred ehHHHHhCCcchhhhhhhhhhHHHHHHHHHHHHHcCcEEEeeeeeeeeccccCccccceeccc
Confidence 9999996 6999999999999999999999999999999999999999999999998888654
No 10
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=90.29 E-value=9 Score=41.01 Aligned_cols=201 Identities=14% Similarity=0.105 Sum_probs=107.5
Q ss_pred HhhhhHHHHHHHHCCCeEEEEecCCCCC-CCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEec
Q 018160 110 IRAAVPTIKHLIQNGAKVILSSHLGRPK-GVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188 (360)
Q Consensus 110 I~a~lpTI~~Lle~GAkVIl~SHlGRPk-g~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLEN 188 (360)
.....++|+.|.++|.+++|+|.++... |+...-.+...+..+-+.+|.++.. +++.. +
T Consensus 199 ~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipfdv---iia~~-----------------~ 258 (526)
T TIGR01663 199 FPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQV---FIAIG-----------------A 258 (526)
T ss_pred ccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCceEE---EEeCC-----------------C
Confidence 3567889999999999999999998863 3322222333355555556666432 22211 0
Q ss_pred ccCccccccCcHHHHHHHhhcC------C----eeeeccc----------------ccccccCcchhccccccCcc-chh
Q 018160 189 VRFYKEEEKNDPEFAKKLASLA------D----LYVNDAF----------------GTAHRAHASTEGVTKYLKPS-VAG 241 (360)
Q Consensus 189 lRF~~eE~~nd~~fa~~LA~l~------D----vyVNDAF----------------gtaHRahAS~~gi~~~l~ps-~aG 241 (360)
. .--|.++.+-..+..-. | +||-|+= +++-|.-|-.+||.-|-|-. +.|
T Consensus 259 ~----~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~~~~D~s~~D~~FA~n~gi~F~tPee~Fl~ 334 (526)
T TIGR01663 259 G----FYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKAAGKKKKDFSCADRLFAANLGIPFATPEEFFLG 334 (526)
T ss_pred C----CCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHHhcCCCcCCCChhhHHHHHHcCCcccChHHHhCC
Confidence 0 01144555444443322 2 5888874 33334456667775433211 111
Q ss_pred hh---HH------HHHHHHHh------hhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeee-----chHHHHHHHHH
Q 018160 242 FL---LQ------KELDYLVG------AVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLL-----GGGMIFTFYKA 301 (360)
Q Consensus 242 ~L---me------kEl~~L~~------~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lli-----GG~ma~tFL~A 301 (360)
.- +. +.+..... ....+.+|.+.|+.|..=|-|=...+.++.....+++ |-.-...-...
T Consensus 335 ~~~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~~~~~~~~a~ 414 (526)
T TIGR01663 335 KPAAGFEKPAFDPRSVQDQGPLCDPDDLALDDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGSTQNCLTACE 414 (526)
T ss_pred CCcccccccCCCchhhcccccccCCcccccCCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHHHHHHHHHHH
Confidence 10 00 00000000 1124578999999999999999999999876444443 32100001111
Q ss_pred cCCcccccc-ccccc--hHHHHHHHHHHHhCCCeEE
Q 018160 302 QGISVGSSL-VEEDK--LDLATTLLAKAKAKGVNLL 334 (360)
Q Consensus 302 ~G~~IG~Sl-vE~d~--i~~Ak~il~~a~~~g~~I~ 334 (360)
+-+.-|+|. ++.-. .+.=+.+++.|+++|+.+.
T Consensus 415 ~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~ 450 (526)
T TIGR01663 415 RALDQGKRCAIDNTNPDAASRAKFLQCARAAGIPCR 450 (526)
T ss_pred HHHhCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 234455664 44433 3345667788888887653
No 11
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=89.66 E-value=17 Score=35.00 Aligned_cols=174 Identities=20% Similarity=0.236 Sum_probs=91.5
Q ss_pred eEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCC
Q 018160 87 KVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDC 166 (360)
Q Consensus 87 rVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~ 166 (360)
||++|+|-+.=+. -| =|.+++-=-+.|.++|.+|+.+..-... ...+.+ +.-|.+|...++.
T Consensus 1 ~i~ir~Da~~~iG-~G------Hv~Rcl~LA~~l~~~g~~v~f~~~~~~~----------~~~~~i-~~~g~~v~~~~~~ 62 (279)
T TIGR03590 1 KILFRADASSEIG-LG------HVMRCLTLARALHAQGAEVAFACKPLPG----------DLIDLL-LSAGFPVYELPDE 62 (279)
T ss_pred CEEEEecCCcccc-cc------HHHHHHHHHHHHHHCCCEEEEEeCCCCH----------HHHHHH-HHcCCeEEEecCC
Confidence 5899999987664 35 5677887777787899998888654311 012233 2235556555443
Q ss_pred CC--HH---HHHHHhcCCCCcEEEEecccCccccccCc----------HHHHHHHhhcCCeeeecccccccccCcchhcc
Q 018160 167 IG--PE---VEKLVASLPEGGVLLLENVRFYKEEEKND----------PEFAKKLASLADLYVNDAFGTAHRAHASTEGV 231 (360)
Q Consensus 167 ~G--~~---v~~~i~~l~~GeVlLLENlRF~~eE~~nd----------~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi 231 (360)
-+ ++ ..+.++.. .-|++++++-+|..+..+.- .+|.. -.-.||+++|-.++.-.-.+... +
T Consensus 63 ~~~~~d~~~~~~~l~~~-~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~-~~~~~D~vin~~~~~~~~~y~~~--~ 138 (279)
T TIGR03590 63 SSRYDDALELINLLEEE-KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLAD-RPHDCDLLLDQNLGADASDYQGL--V 138 (279)
T ss_pred CchhhhHHHHHHHHHhc-CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCC-CCcCCCEEEeCCCCcCHhHhccc--C
Confidence 22 12 22333333 23677777776655432110 01111 01267888887665221111110 1
Q ss_pred ccccCccchhh---hHHHHHHHHHhhh-cC-CCCCeEEEecCCcccc-HHHHHHHHHH
Q 018160 232 TKYLKPSVAGF---LLQKELDYLVGAV-SS-PKRPFAAIVGGSKVSS-KIGVIESLLE 283 (360)
Q Consensus 232 ~~~l~ps~aG~---LmekEl~~L~~~~-~~-p~rP~vaIlGGaKVsd-KI~vi~~Ll~ 283 (360)
+..- .-+.|. ++.+|.....+.. .. +.+..+..+||+-... -..+++.|.+
T Consensus 139 ~~~~-~~l~G~~Y~~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~~~~~~~l~~l~~ 195 (279)
T TIGR03590 139 PANC-RLLLGPSYALLREEFYQLATANKRRKPLRRVLVSFGGADPDNLTLKLLSALAE 195 (279)
T ss_pred cCCC-eEEecchHHhhhHHHHHhhHhhhcccccCeEEEEeCCcCCcCHHHHHHHHHhc
Confidence 2110 125676 8888887665422 22 2244677778877655 2355555543
No 12
>PRK05826 pyruvate kinase; Provisional
Probab=80.57 E-value=9.9 Score=40.10 Aligned_cols=204 Identities=19% Similarity=0.264 Sum_probs=108.4
Q ss_pred hhHHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHH-----HhcCCCCcEEE
Q 018160 113 AVPTIKHLIQNGAKVI--LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-----VASLPEGGVLL 185 (360)
Q Consensus 113 ~lpTI~~Lle~GAkVI--l~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~-----i~~l~~GeVlL 185 (360)
+..+|+.|++.|..+. =+||-.. +....+-...+.+++.+|++|...-|.-||+++-- --.|+.|+.+-
T Consensus 18 ~~e~l~~li~~G~~v~RiN~sHg~~----~~~~~~i~~ir~~~~~~~~~i~I~~Dl~GpkiR~g~~~~~~i~l~~G~~v~ 93 (465)
T PRK05826 18 SPENLEKLIEAGVNVVRLNFSHGSH----EEHGKRAALVREIAAKLGRPVAILLDLKGPKIRVGKFKEGKITLKTGDKFT 93 (465)
T ss_pred CHHHHHHHHHcCCCEEEEEcCCCCH----HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeeccccCCcEEecCCCEEE
Confidence 3468888888887753 3466431 22333444455667777888888888877765421 11356677666
Q ss_pred EecccCccccc----cCcHHHHHHHhhcCCeeeecccccccc-------cC---------cchhccccccCcc--chhhh
Q 018160 186 LENVRFYKEEE----KNDPEFAKKLASLADLYVNDAFGTAHR-------AH---------ASTEGVTKYLKPS--VAGFL 243 (360)
Q Consensus 186 LENlRF~~eE~----~nd~~fa~~LA~l~DvyVNDAFgtaHR-------ah---------AS~~gi~~~l~ps--~aG~L 243 (360)
|-+-+-..+++ -|-++|.+.+...-.||++|.--...= -. .|--|+. +|.. -.-.|
T Consensus 94 l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~~~~~v~~~v~~~g~l~s~kgvn--lp~~~~~lp~l 171 (465)
T PRK05826 94 LDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGIN--IPGGGLSLPAL 171 (465)
T ss_pred EEeccccCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEeCcEecCCceee--ccCcccCCCCC
Confidence 64332111111 134668888888888888885332210 00 0000111 0000 00112
Q ss_pred HHHH-------------------------HHHHHhhhcCCCCCeEEEecCCccccHHHH--HHHHHHhhCeeeechHHHH
Q 018160 244 LQKE-------------------------LDYLVGAVSSPKRPFAAIVGGSKVSSKIGV--IESLLETCDILLLGGGMIF 296 (360)
Q Consensus 244 mekE-------------------------l~~L~~~~~~p~rP~vaIlGGaKVsdKI~v--i~~Ll~kvD~lliGG~ma~ 296 (360)
=|++ ++.+.+.+..-..+-+.| -+||.++-++ |+.++..+|.|++|=|
T Consensus 172 te~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~i--iakIEt~eav~nldeI~~~~DgImIgrg--- 246 (465)
T PRK05826 172 TEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKI--IAKIERAEAVDNIDEIIEASDGIMVARG--- 246 (465)
T ss_pred ChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceE--EEEEcCHHHHHhHHHHHHHcCEEEECcc---
Confidence 2334 444444433221101111 1577766654 4555667999999743
Q ss_pred HHHHHcCCccccccccccchHHHHHHHHHHHhCCCeEEc
Q 018160 297 TFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLL 335 (360)
Q Consensus 297 tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~L 335 (360)
-.|.++| .++....-++|+++|+++|+.++.
T Consensus 247 ----DLg~elg----~~~v~~~qk~Ii~~c~~~gKpvi~ 277 (465)
T PRK05826 247 ----DLGVEIP----DEEVPGLQKKIIRKAREAGKPVIT 277 (465)
T ss_pred ----hhhhhcC----cHhHHHHHHHHHHHHHHcCCCEEE
Confidence 2345555 445667779999999999886554
No 13
>PRK04302 triosephosphate isomerase; Provisional
Probab=74.02 E-value=37 Score=31.65 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=29.8
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceee
Q 018160 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVK 162 (360)
Q Consensus 116 TI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~f 162 (360)
+++.|.+.|+.-||+.|.-|.... -.++...++..+ +|..+-+
T Consensus 77 ~~~~l~~~G~~~vii~~ser~~~~---~e~~~~v~~a~~-~Gl~~I~ 119 (223)
T PRK04302 77 LPEAVKDAGAVGTLINHSERRLTL---ADIEAVVERAKK-LGLESVV 119 (223)
T ss_pred HHHHHHHcCCCEEEEeccccccCH---HHHHHHHHHHHH-CCCeEEE
Confidence 589999999999999998776322 125566666655 4665444
No 14
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.68 E-value=12 Score=38.89 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=37.3
Q ss_pred HHHHhhhcCCCCCeEEEecCC-ccccHHHHHHHHHHhhCeeeechHHHHHHHHH
Q 018160 249 DYLVGAVSSPKRPFAAIVGGS-KVSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (360)
Q Consensus 249 ~~L~~~~~~p~rP~vaIlGGa-KVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (360)
+....+++..+++.++|+||- |=.|.=.+.+.+.+++|.+++.|..+..+...
T Consensus 377 ~s~~~al~~~~~~ii~IlGg~~~~~~~~~~~~~l~~~~~~vi~~G~~~~~i~~~ 430 (498)
T PRK02006 377 GATVAALDGLAQRVVLIAGGDGKGQDFSPLAAPVARHARAVVLIGRDAPAIRAA 430 (498)
T ss_pred HHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHhCCEEEEEcCCHHHHHHH
Confidence 344444444457899999996 55566666777777899999999777666554
No 15
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=70.97 E-value=24 Score=34.86 Aligned_cols=150 Identities=23% Similarity=0.255 Sum_probs=79.7
Q ss_pred HhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecc
Q 018160 110 IRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENV 189 (360)
Q Consensus 110 I~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENl 189 (360)
-.+..+.|...+++|-+|.++|+.|-|.=+++.+ .+++++.+. |.+|..++-.-.-.+.-+...+. + +..
T Consensus 70 ~~~~~~~i~~~l~~G~~ValvSdaGdP~I~dpg~---~Lv~~~~~~-gi~v~vIPGiSA~~aA~a~sG~~-~-----~~f 139 (287)
T PRK14994 70 EQQKAETLLAKLQEGQNIALVSDAGTPLINDPGY---HLVRTCREA-GIRVVPLPGPCAAITALSAAGLP-S-----DRF 139 (287)
T ss_pred HHHHHHHHHHHHHCCCeEEEEccCCCCceeCCHH---HHHHHHHHC-CCCEEEeCCHHHHHHHHHHcCCC-C-----Ccc
Confidence 3556678888889999999999999994354444 444555543 88999987654333333334444 2 333
Q ss_pred c---CccccccCcHHHHHHHhhcCCeeeecccccccccCcchhccccccCc---c----chhhhHHH----HHHHHHhhh
Q 018160 190 R---FYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKP---S----VAGFLLQK----ELDYLVGAV 255 (360)
Q Consensus 190 R---F~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi~~~l~p---s----~aG~Lmek----El~~L~~~~ 255 (360)
. |.+...+...+.-++|....+-.| -|=+.||-...+..+-+.+.+ . -+|...|. -+..+...+
T Consensus 140 ~f~Gflp~~~~~r~~~L~~l~~~~~t~V--~yesp~R~~~~l~~l~~~~g~~~~v~i~relTk~~E~~~~g~~~~i~~~~ 217 (287)
T PRK14994 140 CYEGFLPAKSKGRRDALKALEAEPRTLI--FYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWV 217 (287)
T ss_pred eEeEECCCCCchHHHHHHHHhcCCCeEE--EEEEChhHHHHHHHHHHhcCCCCeEEEEeeccCCCCcEEeeEHHHHHHHH
Confidence 3 333322222333344444555333 233346666555544333211 1 11222211 122222222
Q ss_pred ----cCCCCCeEEEecCCcc
Q 018160 256 ----SSPKRPFAAIVGGSKV 271 (360)
Q Consensus 256 ----~~p~rP~vaIlGGaKV 271 (360)
..++..||.|++|.+.
T Consensus 218 ~~~~~~~kGE~vivi~~~~~ 237 (287)
T PRK14994 218 KEDENRRKGEMVLIVEGHKA 237 (287)
T ss_pred HhcCCCCCceEEEEEeCCcc
Confidence 2468999999999764
No 16
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.00 E-value=18 Score=36.66 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=36.8
Q ss_pred HHHHHhhhcCCCCCeEEEecC-CccccHHHHHHHHHHhhCeeeechHHHHHHH
Q 018160 248 LDYLVGAVSSPKRPFAAIVGG-SKVSSKIGVIESLLETCDILLLGGGMIFTFY 299 (360)
Q Consensus 248 l~~L~~~~~~p~rP~vaIlGG-aKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL 299 (360)
.+.+..+++.+.++.++|+|| .|--|--.+++.+.+.+|.+++.|--+..+.
T Consensus 301 ~~s~~~al~~~~~~~i~vlG~~~~~~d~~~l~~~~~~~~~~v~~~G~~~~~i~ 353 (418)
T PRK00683 301 VSAVEKALLAVGNQVIVILGGRNKGCDFSSLLPVLRQTAKHVVAMGECRQEIA 353 (418)
T ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHhCCEEEEECCCHHHHH
Confidence 344555555556789999998 6666665778888778999999886544443
No 17
>PRK06988 putative formyltransferase; Provisional
Probab=68.87 E-value=25 Score=34.86 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=52.9
Q ss_pred hhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEeccc
Q 018160 112 AAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVR 190 (360)
Q Consensus 112 a~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlR 190 (360)
-++|+++.|+++|.. +.+++|-.||.+ +....++.++ .+..|.|+...++.-.++..+.++...+-=+++.---+
T Consensus 13 ~a~~~L~~L~~~~~~i~~Vvt~~d~~~~---~~~~~~v~~~-A~~~gip~~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ 88 (312)
T PRK06988 13 VGVRCLQVLLARGVDVALVVTHEDNPTE---NIWFGSVAAV-AAEHGIPVITPADPNDPELRAAVAAAAPDFIFSFYYRH 88 (312)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCcc---CcCCCHHHHH-HHHcCCcEEccccCCCHHHHHHHHhcCCCEEEEehhcc
Confidence 478999999999988 567888888854 2333455444 44458888776666667777777776654444444445
Q ss_pred Ccccc
Q 018160 191 FYKEE 195 (360)
Q Consensus 191 F~~eE 195 (360)
+.+++
T Consensus 89 iip~~ 93 (312)
T PRK06988 89 MIPVD 93 (312)
T ss_pred ccCHH
Confidence 55554
No 18
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=68.50 E-value=29 Score=34.33 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=55.3
Q ss_pred hhHHHHHHHHCCCeE-EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccC
Q 018160 113 AVPTIKHLIQNGAKV-ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (360)
Q Consensus 113 ~lpTI~~Lle~GAkV-Il~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF 191 (360)
++|+++.|+++|..| .++++-.+|.|...++.-.|+.++..+ .|.||...++.-.++..+.++++++-=+++.-.-++
T Consensus 12 a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~-~~Ipv~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~i 90 (313)
T TIGR00460 12 SLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEE-KGIPVFQPEKQRQLEELPLVRELKPDVIVVVSFGKI 90 (313)
T ss_pred HHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHH-cCCCEEecCCCCcHHHHHHHHhhCCCEEEEccchhh
Confidence 689999999999885 478888888775445555566555544 589987666655556666677777744444444455
Q ss_pred cccc
Q 018160 192 YKEE 195 (360)
Q Consensus 192 ~~eE 195 (360)
.+++
T Consensus 91 ip~~ 94 (313)
T TIGR00460 91 LPKE 94 (313)
T ss_pred CCHH
Confidence 5555
No 19
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=67.87 E-value=29 Score=34.87 Aligned_cols=48 Identities=31% Similarity=0.520 Sum_probs=35.9
Q ss_pred hhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCcee
Q 018160 113 AVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVV 161 (360)
Q Consensus 113 ~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~ 161 (360)
+.|+++.|+++|.. |-+.+|-.||.|...++...|+.+. ...+|.||.
T Consensus 13 a~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~-A~~~~ipv~ 61 (307)
T COG0223 13 AVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRL-ALELGIPVF 61 (307)
T ss_pred hHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHH-HHHcCCcee
Confidence 67899999999977 7789999999986666766677544 344455533
No 20
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=67.73 E-value=12 Score=36.63 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=41.0
Q ss_pred CeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEec
Q 018160 86 KKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSH 132 (360)
Q Consensus 86 KrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SH 132 (360)
||++|.+=-++=.+++|.-.|..+|......|..|.++|.+|||+||
T Consensus 9 ~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVss 55 (284)
T cd04256 9 KRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTS 55 (284)
T ss_pred CEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 89999998888655445457999999999999999999999999999
No 21
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=66.17 E-value=36 Score=33.47 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEeccc
Q 018160 112 AAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVR 190 (360)
Q Consensus 112 a~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlR 190 (360)
-++|+++.|+++|.. +.+++|-.+|.|...++...|+.++. +..|.||.-.++.-.++..+.++++++-=+++.-.-+
T Consensus 11 ~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a-~~~~Ip~~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ 89 (309)
T PRK00005 11 FAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLA-LEHGIPVLQPEKLRDPEFLAELAALNADVIVVVAYGQ 89 (309)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHH-HHcCCCEECcCCCCCHHHHHHHHhcCcCEEEEehhhc
Confidence 468999999998888 45788888887643344444554444 4578887555555456677778887765556555556
Q ss_pred Ccccc
Q 018160 191 FYKEE 195 (360)
Q Consensus 191 F~~eE 195 (360)
+.+++
T Consensus 90 iip~~ 94 (309)
T PRK00005 90 ILPKA 94 (309)
T ss_pred ccCHH
Confidence 66666
No 22
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=65.55 E-value=26 Score=35.16 Aligned_cols=191 Identities=23% Similarity=0.291 Sum_probs=112.8
Q ss_pred cccCccCCCCCCCeEEEEeccCCCCC------CCCCcCcchh--HhhhhHHHHHHHHCCCeEEEEecCCCCC-----C-C
Q 018160 74 SVGELSGADLKGKKVFVRADLNVPLD------DNQNITDDTR--IRAAVPTIKHLIQNGAKVILSSHLGRPK-----G-V 139 (360)
Q Consensus 74 ~i~~l~d~dl~gKrVlvRvD~NVPl~------~~g~I~Dd~R--I~a~lpTI~~Lle~GAkVIl~SHlGRPk-----g-~ 139 (360)
.+.++++++ +|.+|++|.---.|-. .+-++.|.|. ....--+.+...++|.++||+.|-|-|. | +
T Consensus 57 fve~l~e~p-~~~~VIfsAHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~ 135 (294)
T COG0761 57 FVEELDEVP-DGATVIFSAHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREGYEIILIGHKGHPEVIGTMGQY 135 (294)
T ss_pred eccccccCC-CCCEEEEECCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhCCCEEEEEccCCCCceeeecccc
Confidence 456777777 8889999976655431 1236777775 3344457888899999999999999996 3 2
Q ss_pred CC-CCChhhhHHHHHHH---hCCceeecCCCC--CHHHHHHHhcCCCCcEEEEecccCcccc----------ccCcHHHH
Q 018160 140 TP-KFSLAPLVPRLSEL---LGIQVVKADDCI--GPEVEKLVASLPEGGVLLLENVRFYKEE----------EKNDPEFA 203 (360)
Q Consensus 140 ~~-~~SL~pva~~Ls~l---Lg~~V~fv~d~~--G~~v~~~i~~l~~GeVlLLENlRF~~eE----------~~nd~~fa 203 (360)
.+ ...|-.-.+.+.++ +..++.|+.... =++..+.++.|+. ||-..+ +.|-.+=+
T Consensus 136 ~~~~~~lve~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~---------r~p~~~~~~~~~ICyAT~nRQ~Av 206 (294)
T COG0761 136 PEGGVLLVESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKE---------RFPKIEVPPFNDICYATQNRQDAV 206 (294)
T ss_pred CCCceEEEecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHH---------hCccccCCcccccchhhhhHHHHH
Confidence 23 35555555666665 444677765442 2455555555532 332211 34556789
Q ss_pred HHHhhcCCeeeecccccccccCcchh----ccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHH--HH
Q 018160 204 KKLASLADLYVNDAFGTAHRAHASTE----GVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKI--GV 277 (360)
Q Consensus 204 ~~LA~l~DvyVNDAFgtaHRahAS~~----gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI--~v 277 (360)
+.||+-+|+++- -| -.|+|.+ -+++-. +...+|++.+=+.=...+.. .-.+.|-.||-..|.| .+
T Consensus 207 k~la~~~Dl~iV--VG---~~nSSNs~rL~eiA~~~--g~~aylId~~~ei~~~w~~~--~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 207 KELAPEVDLVIV--VG---SKNSSNSNRLAEIAKRH--GKPAYLIDDAEEIDPEWLKG--VKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred HHHhhcCCEEEE--EC---CCCCccHHHHHHHHHHh--CCCeEEeCChHhCCHHHhcC--ccEEEEecCCCCCHHHHHHH
Confidence 999999998763 12 2344543 122110 11233333221111223333 4568999999999887 56
Q ss_pred HHHHHH
Q 018160 278 IESLLE 283 (360)
Q Consensus 278 i~~Ll~ 283 (360)
|+.|-+
T Consensus 278 i~~l~~ 283 (294)
T COG0761 278 IAKLRE 283 (294)
T ss_pred HHHHHH
Confidence 655544
No 23
>PRK06801 hypothetical protein; Provisional
Probab=61.78 E-value=1.5e+02 Score=29.29 Aligned_cols=153 Identities=20% Similarity=0.256 Sum_probs=86.0
Q ss_pred hHHHHHHHHCCCeEEEE--ecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccC
Q 018160 114 VPTIKHLIQNGAKVILS--SHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (360)
Q Consensus 114 lpTI~~Lle~GAkVIl~--SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF 191 (360)
+.+|+..++.|..-|.+ ||+ | .++.+.+..-+..+..-.|..|.-.-..+|- .++++. +...
T Consensus 87 ~e~i~~Ai~~GftSVm~D~S~l--~--~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg---------~e~~v~-~~~~-- 150 (286)
T PRK06801 87 FEAVVRALRLGFSSVMFDGSTL--E--YEENVRQTREVVKMCHAVGVSVEAELGAVGG---------DEGGAL-YGEA-- 150 (286)
T ss_pred HHHHHHHHHhCCcEEEEcCCCC--C--HHHHHHHHHHHHHHHHHcCCeEEeecCcccC---------CCCCcc-cCCc--
Confidence 56788889999997777 333 2 1122222111222333446666554444431 112221 1100
Q ss_pred ccccccCcHHHHHHHh--hcCCeeeecccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCC
Q 018160 192 YKEEEKNDPEFAKKLA--SLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGS 269 (360)
Q Consensus 192 ~~eE~~nd~~fa~~LA--~l~DvyVNDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGa 269 (360)
......+|+-++++. .-+|+.-- +||++|..+.. -++ .+|-.-+|+. +.+ .-| +++.|||
T Consensus 151 -~~~~~T~pe~a~~f~~~tgvD~LAv-aiGt~Hg~y~~---~~~------l~~e~l~~i~---~~~---~~P-LVlHGGS 212 (286)
T PRK06801 151 -DSAKFTDPQLARDFVDRTGIDALAV-AIGNAHGKYKG---EPK------LDFARLAAIH---QQT---GLP-LVLHGGS 212 (286)
T ss_pred -ccccCCCHHHHHHHHHHHCcCEEEe-ccCCCCCCCCC---CCC------CCHHHHHHHH---Hhc---CCC-EEEECCC
Confidence 011234655555554 47787767 99999998863 222 2333333333 222 457 5889999
Q ss_pred ccccHHHHHHHHHH-hhCeeeechHHHHHHHHHc
Q 018160 270 KVSSKIGVIESLLE-TCDILLLGGGMIFTFYKAQ 302 (360)
Q Consensus 270 KVsdKI~vi~~Ll~-kvD~lliGG~ma~tFL~A~ 302 (360)
.+++-- +..+++ -+++|=++..+-..|..+-
T Consensus 213 gi~~e~--~~~~i~~Gi~KINv~T~~~~a~~~~~ 244 (286)
T PRK06801 213 GISDAD--FRRAIELGIHKINFYTGMSQAALAAV 244 (286)
T ss_pred CCCHHH--HHHHHHcCCcEEEehhHHHHHHHHHH
Confidence 999733 444444 6999999999999888775
No 24
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=60.83 E-value=30 Score=28.45 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=46.8
Q ss_pred cchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCC--CHHHHHHHhc-CCCCc
Q 018160 106 DDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCI--GPEVEKLVAS-LPEGG 182 (360)
Q Consensus 106 Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~--G~~v~~~i~~-l~~Ge 182 (360)
+++=|-.+...|++|.++|.+++++|--+ ..|-+.++++| +.+|.++.. ++++ +..+.+.++. ...+.
T Consensus 12 g~~~ipga~e~l~~L~~~g~~~~~lTNns-------~~s~~~~~~~L-~~~Gi~~~~-~~i~ts~~~~~~~l~~~~~~~~ 82 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRERGKPVVFLTNNS-------SRSREEYAKKL-KKLGIPVDE-DEIITSGMAAAEYLKEHKGGKK 82 (101)
T ss_dssp TTEE-TTHHHHHHHHHHTTSEEEEEES-S-------SS-HHHHHHHH-HHTTTT--G-GGEEEHHHHHHHHHHHHTTSSE
T ss_pred CCCcCcCHHHHHHHHHHcCCCEEEEeCCC-------CCCHHHHHHHH-HhcCcCCCc-CEEEChHHHHHHHHHhcCCCCE
Confidence 35567788999999999999999998654 34677888999 558988766 5555 4445555554 33444
Q ss_pred EEEE
Q 018160 183 VLLL 186 (360)
Q Consensus 183 VlLL 186 (360)
|.++
T Consensus 83 v~vl 86 (101)
T PF13344_consen 83 VYVL 86 (101)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 25
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.51 E-value=40 Score=34.30 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=33.8
Q ss_pred CCCeEEEecC-CccccHHHHHHHHHHhhCeeeechHHHHHHHHH
Q 018160 259 KRPFAAIVGG-SKVSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (360)
Q Consensus 259 ~rP~vaIlGG-aKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (360)
++|.++|+|| .|-.|.-.+++.+.+.+|.+++-|..+..+...
T Consensus 348 ~~~~i~IlGg~~~~~d~~~~~~~l~~~~~~vi~~g~~~~~l~~~ 391 (459)
T PRK02705 348 PGPVILIAGGEAKQGDDSAWLKQIKAKAAAVLLFGEAAPTLAQR 391 (459)
T ss_pred CCCeEEEecCccCCCCHHHHHHHHHhheeEEEEECCCHHHHHHH
Confidence 3578999998 667788888888878899999988877665443
No 26
>PRK05337 beta-hexosaminidase; Provisional
Probab=55.78 E-value=51 Score=33.19 Aligned_cols=110 Identities=21% Similarity=0.235 Sum_probs=65.2
Q ss_pred ccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhH-hhhhHHHHHHHHCCCeEEEEecCCCCC--CCCCCCChhhhHHH
Q 018160 75 VGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRI-RAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPR 151 (360)
Q Consensus 75 i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI-~a~lpTI~~Lle~GAkVIl~SHlGRPk--g~~~~~SL~pva~~ 151 (360)
+..++.+.-.|.. -.+-+++.|+++ .+...+ +..++--+.++++|+.-|+++|.--|. +..-.+|=.-+-+.
T Consensus 161 ~~~~KHFpG~G~~-~~dsh~~~~~~~----~~~~el~~~~l~PF~~ai~~g~~~vM~aHv~y~~id~~Pa~~S~~~l~~l 235 (337)
T PRK05337 161 AATGKHFPGHGAV-EADSHVETPVDE----RPLEEIRAEDMAPFRALIAAGLDAVMPAHVIYPQVDPRPAGFSRYWLQDI 235 (337)
T ss_pred EEEecccCCCCCC-cCCCCCCCCCCC----CCHHHHHhhhHHHHHHHHhcCCCEEEeCceeccCCCCCCCcCCHHHHHHH
Confidence 3444444445532 234456666542 112233 345788888999999999999988885 22223444445578
Q ss_pred HHHHhCCceeecCCCCC--------HHHHHHHhcCCCC-cEEEEecc
Q 018160 152 LSELLGIQVVKADDCIG--------PEVEKLVASLPEG-GVLLLENV 189 (360)
Q Consensus 152 Ls~lLg~~V~fv~d~~G--------~~v~~~i~~l~~G-eVlLLENl 189 (360)
|.+.+|.+=..+.|+.+ ...+.++.+++.| |++|.-|-
T Consensus 236 LR~elGF~G~ViSD~l~m~a~~~~~~~~~~~~~al~AG~Dl~l~~~~ 282 (337)
T PRK05337 236 LRQELGFDGVIFSDDLSMEGAAVAGDYAERAQAALDAGCDMVLVCNN 282 (337)
T ss_pred HHHhcCCCEEEEecchhhhhhhhcCCHHHHHHHHHHcCCCEEeeCCC
Confidence 99999988655666542 2233444555656 66666553
No 27
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=55.73 E-value=14 Score=34.46 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=27.6
Q ss_pred CCcCcch--hHhhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITDDT--RIRAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~Dd~--RI~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|.++++. .+......|+.|.++|.+++++| |||
T Consensus 8 GTll~~~~~~~~~~~~~i~~l~~~g~~~~~~T--gR~ 42 (256)
T TIGR01486 8 GTLLDPHGYDWGPAKEVLERLQELGIPVIPCT--SKT 42 (256)
T ss_pred CCCcCCCCcCchHHHHHHHHHHHCCCeEEEEc--CCC
Confidence 6777765 46778899999999999999997 987
No 28
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=55.39 E-value=15 Score=34.72 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=32.2
Q ss_pred CCcCcchh-H-hhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHH
Q 018160 102 QNITDDTR-I-RAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRL 152 (360)
Q Consensus 102 g~I~Dd~R-I-~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~L 152 (360)
|+++|+.+ + .....+|+.|.++|.+++++| |||- .++.++++.|
T Consensus 16 GTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaT--GR~~-----~~i~~~~~~l 61 (271)
T PRK03669 16 GTLLDSHTYDWQPAAPWLTRLREAQVPVILCS--SKTA-----AEMLPLQQTL 61 (271)
T ss_pred cCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEc--CCCH-----HHHHHHHHHh
Confidence 67776544 4 567889999999999999998 8872 3455555444
No 29
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.21 E-value=42 Score=34.13 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=31.1
Q ss_pred hhhcCCCCCeEEEecCC-ccccHHHHHHHHHHhhCeeeechHHHHHHH
Q 018160 253 GAVSSPKRPFAAIVGGS-KVSSKIGVIESLLETCDILLLGGGMIFTFY 299 (360)
Q Consensus 253 ~~~~~p~rP~vaIlGGa-KVsdKI~vi~~Ll~kvD~lliGG~ma~tFL 299 (360)
.+++.-.+|.++|+||- |-.|-=.+++.+.+.+|.+++.|--+..+.
T Consensus 336 ~al~~~~~~~i~IlGg~~~~~~~~~~~~~l~~~~~~vil~G~~~~~l~ 383 (445)
T PRK04308 336 AAIAGLQNPLFVILGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQIR 383 (445)
T ss_pred HHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHhCcEEEEECCCHHHHH
Confidence 33333345799999977 555655566666667899988886554443
No 30
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.18 E-value=78 Score=32.30 Aligned_cols=43 Identities=19% Similarity=-0.025 Sum_probs=26.4
Q ss_pred CCCCeEEEecCC-ccccHHHHHHHHHHhhCeeeechHHHHHHHH
Q 018160 258 PKRPFAAIVGGS-KVSSKIGVIESLLETCDILLLGGGMIFTFYK 300 (360)
Q Consensus 258 p~rP~vaIlGGa-KVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~ 300 (360)
+.+|.++|+||. |-.|--.+.+.+.+..+.+++-|-.+..+..
T Consensus 337 ~~~~~i~IlGg~~~~~~~~~l~~~~~~~~~~vi~~G~~~~~~~~ 380 (438)
T PRK04663 337 IEGKLYLLVGGVGKGADFSPLKPVLATLNLQLCCFGEDGDQFMP 380 (438)
T ss_pred cCCcEEEEECCccCCCCHHHHHHHHHhhCcEEEEECCCHHHHHH
Confidence 346899999997 4444333333333344588888877655544
No 31
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=53.32 E-value=17 Score=33.92 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=26.8
Q ss_pred CCcCc-chhHhhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITD-DTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~D-d~RI~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|.+++ +..+.++..+|+.|.++|.+++++| |||
T Consensus 8 GTLl~~~~~~~~~~~ai~~l~~~G~~~vi~T--gR~ 41 (225)
T TIGR02461 8 GTLLPPGYEPGPAREALEELKDLGFPIVFVS--SKT 41 (225)
T ss_pred CCCcCCCCCchHHHHHHHHHHHCCCEEEEEe--CCC
Confidence 56555 4556678999999999999999996 887
No 32
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=51.62 E-value=43 Score=34.79 Aligned_cols=69 Identities=23% Similarity=0.353 Sum_probs=50.0
Q ss_pred hhhHH-HHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecc
Q 018160 112 AAVPT-IKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENV 189 (360)
Q Consensus 112 a~lpT-I~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENl 189 (360)
+++-| +-.+++.|-+||+.... +-...-+.+.+-+.+|.+|.|+++-.++...+++.. ++-.++++|--
T Consensus 89 aAI~~~~l~ll~~GD~vl~~~~~--------YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~-~~tk~v~lEtP 158 (396)
T COG0626 89 AAISTALLALLKAGDHVLLPDDL--------YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE-PNTKLVFLETP 158 (396)
T ss_pred HHHHHHHHHhcCCCCEEEecCCc--------cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc-cCceEEEEeCC
Confidence 34444 77888889888876552 224445666666669999999999988888777654 56788988853
No 33
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=51.53 E-value=28 Score=31.05 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHH---hCCceee
Q 018160 112 AAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSEL---LGIQVVK 162 (360)
Q Consensus 112 a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~l---Lg~~V~f 162 (360)
...+.|++|.++|.+|||+|.|+--...-...+++.+-+++..+ |+.++.+
T Consensus 33 ~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~ 86 (159)
T PF08645_consen 33 GVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQV 86 (159)
T ss_dssp THHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEE
T ss_pred hHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEE
Confidence 47889999999999999999998553111345666666666555 4666543
No 34
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=50.85 E-value=28 Score=27.38 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=38.1
Q ss_pred hHhhhhHHHHHHHHC-CCeEEEEecCCCCCC-CCCCCChhhhHHHHHHHhCCceeecCCCC
Q 018160 109 RIRAAVPTIKHLIQN-GAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCI 167 (360)
Q Consensus 109 RI~a~lpTI~~Lle~-GAkVIl~SHlGRPkg-~~~~~SL~pva~~Ls~lLg~~V~fv~d~~ 167 (360)
+....+..|..++++ ....|.++=-|...| ....+. .++.+.|++.++.||.+.+|..
T Consensus 35 ~~~~~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~-~~l~~~l~~~~~~pv~~~nDa~ 94 (99)
T smart00732 35 NKEADAARLKKLIKKYQPDLIVIGLPLNMNGTASRETE-EAFAELLKERFNLPVVLVDERL 94 (99)
T ss_pred CcchHHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHHHH-HHHHHHHHHhhCCcEEEEeCCc
Confidence 345556777777765 344555554443334 222234 8899999999999999999974
No 35
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=49.81 E-value=29 Score=35.58 Aligned_cols=81 Identities=28% Similarity=0.452 Sum_probs=51.9
Q ss_pred CCCCCeEEEEeccCC-----CCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCC--CCCCChhhhHHHHHH
Q 018160 82 DLKGKKVFVRADLNV-----PLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV--TPKFSLAPLVPRLSE 154 (360)
Q Consensus 82 dl~gKrVlvRvD~NV-----Pl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~--~~~~SL~pva~~Ls~ 154 (360)
.++|+.+===.||++ |+..+|+| | .+|++.-+...-|+|. ..|-+|+ .+.++++.+++.+.-
T Consensus 126 G~rg~~~gSL~dfgi~Y~~v~Lt~~gki-D-------~~~v~~~i~~~tkli~---IQRS~GY~~RpS~~I~eI~~~i~~ 194 (416)
T COG4100 126 GLRGEGQGSLKDFGIKYKAVPLTADGKI-D-------IQAVKTAISDRTKLIG---IQRSKGYAWRPSLSIAEIEEMITF 194 (416)
T ss_pred ccCCCCcccHHHhCcceeecccccCCcc-c-------HHHHHHhcCccceEEE---EEeccCcCCCCcccHHHHHHHHHH
Confidence 455554444446665 77656776 3 3455555666777775 4677774 466777776665544
Q ss_pred H---hCCceeecCCCCCHHHHH
Q 018160 155 L---LGIQVVKADDCIGPEVEK 173 (360)
Q Consensus 155 l---Lg~~V~fv~d~~G~~v~~ 173 (360)
+ -..-+.|+|+|.|+-+++
T Consensus 195 vk~inpn~ivFVDNCYGEFvE~ 216 (416)
T COG4100 195 VKEINPNVIVFVDNCYGEFVEE 216 (416)
T ss_pred HHhcCCCEEEEEeccchhhhhc
Confidence 3 344589999999987764
No 36
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=49.42 E-value=83 Score=34.05 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=56.1
Q ss_pred hhHHHHHHHHCCCeEE-EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccC
Q 018160 113 AVPTIKHLIQNGAKVI-LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (360)
Q Consensus 113 ~lpTI~~Lle~GAkVI-l~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF 191 (360)
++|+++.|+++|..|+ +++|-.||.+. ....|+ ..+.+..|.||.-.++.-.++..+.++.+++-=+++.---++
T Consensus 12 a~~~l~~L~~~~~~i~~V~t~pd~~~~~---~~~~~v-~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~~i 87 (660)
T PRK08125 12 GCVGIEALLAAGYEIAAVFTHTDNPGEN---HFFGSV-ARLAAELGIPVYAPEDVNHPLWVERIRELAPDVIFSFYYRNL 87 (660)
T ss_pred HHHHHHHHHHCCCcEEEEEeCCCCCcCC---CCcCHH-HHHHHHcCCcEEeeCCCCcHHHHHHHHhcCCCEEEEcccccc
Confidence 6899999999998877 89998888652 222244 445666789987766666677777788877655555555566
Q ss_pred cccc
Q 018160 192 YKEE 195 (360)
Q Consensus 192 ~~eE 195 (360)
.++|
T Consensus 88 i~~~ 91 (660)
T PRK08125 88 LSDE 91 (660)
T ss_pred CCHH
Confidence 6655
No 37
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=49.19 E-value=28 Score=29.97 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.3
Q ss_pred HhhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 110 IRAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 110 I~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
.....++|++|.++|.++.|+|-..|.
T Consensus 29 ~~g~~~~l~~Lk~~g~~~~I~Sn~~~~ 55 (147)
T TIGR01656 29 RPGAVPALLTLRAAGYTVVVVTNQSGI 55 (147)
T ss_pred cCChHHHHHHHHHCCCEEEEEeCCCcc
Confidence 456678999999999999999988765
No 38
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=48.02 E-value=2.7e+02 Score=27.05 Aligned_cols=160 Identities=17% Similarity=0.203 Sum_probs=89.8
Q ss_pred HhhhhHHHHHHHHC--CCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEe
Q 018160 110 IRAAVPTIKHLIQN--GAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLE 187 (360)
Q Consensus 110 I~a~lpTI~~Lle~--GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLE 187 (360)
++..+..++.+.++ ...+|+|+=+.-- ..+.++.+.+.+++. |.+=..++|.--++.++.++.++.-+ |+
T Consensus 73 ~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i----~~~G~e~f~~~~~~a-GvdGviipDLp~ee~~~~~~~~~~~g---l~ 144 (258)
T PRK13111 73 LADVFELVREIREKDPTIPIVLMTYYNPI----FQYGVERFAADAAEA-GVDGLIIPDLPPEEAEELRAAAKKHG---LD 144 (258)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecccHH----hhcCHHHHHHHHHHc-CCcEEEECCCCHHHHHHHHHHHHHcC---Cc
Confidence 34456677777644 3457888765521 355777888888776 77777778876667766665554322 33
Q ss_pred cccCccccccCcHHHHHHHhhcCC--eeeecccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEE
Q 018160 188 NVRFYKEEEKNDPEFAKKLASLAD--LYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAI 265 (360)
Q Consensus 188 NlRF~~eE~~nd~~fa~~LA~l~D--vyVNDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaI 265 (360)
++-|..... .++-.+.++++++ ||+--- ..++|...-++ .-++..++.+.+ ....|.++
T Consensus 145 ~I~lvap~t--~~eri~~i~~~s~gfIY~vs~--------~GvTG~~~~~~-----~~~~~~i~~vk~---~~~~pv~v- 205 (258)
T PRK13111 145 LIFLVAPTT--TDERLKKIASHASGFVYYVSR--------AGVTGARSADA-----ADLAELVARLKA---HTDLPVAV- 205 (258)
T ss_pred EEEEeCCCC--CHHHHHHHHHhCCCcEEEEeC--------CCCCCcccCCC-----ccHHHHHHHHHh---cCCCcEEE-
Confidence 444444322 2334555555554 554222 22233322121 123333444444 44567643
Q ss_pred ecCCccccHHHHHHHHHHhhCeeeechHHHHHHH
Q 018160 266 VGGSKVSSKIGVIESLLETCDILLLGGGMIFTFY 299 (360)
Q Consensus 266 lGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL 299 (360)
|.-|+++-.+-+ +.+.||.+++|-++...+-
T Consensus 206 --GfGI~~~e~v~~-~~~~ADGviVGSaiv~~~~ 236 (258)
T PRK13111 206 --GFGISTPEQAAA-IAAVADGVIVGSALVKIIE 236 (258)
T ss_pred --EcccCCHHHHHH-HHHhCCEEEEcHHHHHHHH
Confidence 555666665554 4456999999999886653
No 39
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=46.47 E-value=54 Score=29.33 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=32.3
Q ss_pred cccCccCCCCCCCeEEEEeccCCCCCCC--CCcCcc--hhHhhhhHHHHHHHHCCCe-EEEEecC
Q 018160 74 SVGELSGADLKGKKVFVRADLNVPLDDN--QNITDD--TRIRAAVPTIKHLIQNGAK-VILSSHL 133 (360)
Q Consensus 74 ~i~~l~d~dl~gKrVlvRvD~NVPl~~~--g~I~Dd--~RI~a~lpTI~~Lle~GAk-VIl~SHl 133 (360)
...|....|++||-|++.-+ .|-+.+ +..-+. ++.-..---.+++.++||+ ||++.+.
T Consensus 37 ~~dDYag~DVkGKIVlv~~g--~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 37 SWDDYAGLDVKGKVVVVLRN--DPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred ChhhcCCCCCCCcEEEEEcC--CCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 34466667999999999764 342111 111111 1111111256789999999 6666654
No 40
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.32 E-value=56 Score=26.50 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=21.7
Q ss_pred HHHHHHHhhCeeeechHHHHHHHHHcCCccccccccccchHHHHHHHHHHHhCCCeEE
Q 018160 277 VIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLL 334 (360)
Q Consensus 277 vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~ 334 (360)
-|++.++++|.+|+ =.+.+. -+....+-+.|+++|+.++
T Consensus 41 ~l~~~i~~aD~VIv----------------~t~~vs---H~~~~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 41 RLPSKIKKADLVIV----------------FTDYVS---HNAMWKVKKAAKKYGIPII 79 (97)
T ss_pred HHHHhcCCCCEEEE----------------EeCCcC---hHHHHHHHHHHHHcCCcEE
Confidence 36677777777665 012233 3444455555788776543
No 41
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=45.96 E-value=28 Score=35.09 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=39.7
Q ss_pred ChhhhHHHHHHHhC-----CceeecCCCCCHHHHHHHhcC---CCC-cEEEEecccCccccccCcHHHHHHHhh
Q 018160 144 SLAPLVPRLSELLG-----IQVVKADDCIGPEVEKLVASL---PEG-GVLLLENVRFYKEEEKNDPEFAKKLAS 208 (360)
Q Consensus 144 SL~pva~~Ls~lLg-----~~V~fv~d~~G~~v~~~i~~l---~~G-eVlLLENlRF~~eE~~nd~~fa~~LA~ 208 (360)
++....++..+.+. ++|..--+. =+++.++++.+ +.| |++||+|.|+-+||.+.+++-.++..+
T Consensus 185 ~i~~av~~~r~~~~~~~~~~kIeVEv~t-leea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~ 257 (308)
T PLN02716 185 GITNAVQSADKYLEEKGLSMKIEVETRT-LEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVE 257 (308)
T ss_pred CHHHHHHHHHHhhhhcCCCeeEEEEECC-HHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHH
Confidence 67777777777432 233332222 24555555411 033 999999999999998888775555433
No 42
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=45.77 E-value=60 Score=31.99 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=56.1
Q ss_pred cCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCC-CHHHHHHHhcCCC-C
Q 018160 104 ITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCI-GPEVEKLVASLPE-G 181 (360)
Q Consensus 104 I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~-G~~v~~~i~~l~~-G 181 (360)
+.+.+.|-.+..+|+.|.++|-+++++|--+++ |=+.++++|+++.+.++..-.-+. |......++...+ +
T Consensus 20 ~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~-------s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~ 92 (269)
T COG0647 20 YRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTR-------SREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGK 92 (269)
T ss_pred EeCCccCchHHHHHHHHHHcCCeEEEEeCCCCC-------CHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCC
Confidence 345668889999999999999999999977765 555688999998888877654443 4555555665443 5
Q ss_pred cEEEEe
Q 018160 182 GVLLLE 187 (360)
Q Consensus 182 eVlLLE 187 (360)
.|.++-
T Consensus 93 kv~viG 98 (269)
T COG0647 93 KVYVIG 98 (269)
T ss_pred EEEEEC
Confidence 666654
No 43
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=45.04 E-value=53 Score=29.66 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=34.8
Q ss_pred ccCccCCCCCCCeEEEEeccCCCCCCC-CCcCcc---hhHhhhhHHHHHHHHCCCe-EEEEecCCCC
Q 018160 75 VGELSGADLKGKKVFVRADLNVPLDDN-QNITDD---TRIRAAVPTIKHLIQNGAK-VILSSHLGRP 136 (360)
Q Consensus 75 i~~l~d~dl~gKrVlvRvD~NVPl~~~-g~I~Dd---~RI~a~lpTI~~Lle~GAk-VIl~SHlGRP 136 (360)
..+...+|++||-||++-+ .|-+.+ +.+... +|.-.----++...++||+ ||+..+....
T Consensus 38 ~~Dy~giDVkGKIVlv~~g--~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~ 102 (151)
T cd04822 38 YDDYAGLDVKGKIVLVLRH--EPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSH 102 (151)
T ss_pred hhhccCCCCCCeEEEEEcC--CcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCccc
Confidence 3344456999999999654 354321 112111 1222222356788999999 8888775443
No 44
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=44.69 E-value=1.2e+02 Score=25.82 Aligned_cols=46 Identities=17% Similarity=0.337 Sum_probs=23.4
Q ss_pred hCeeeechH-----------HHHHHHHHcCCccccccccccc---hHHHHHHHHHHHhCC
Q 018160 285 CDILLLGGG-----------MIFTFYKAQGISVGSSLVEEDK---LDLATTLLAKAKAKG 330 (360)
Q Consensus 285 vD~lliGG~-----------ma~tFL~A~G~~IG~SlvE~d~---i~~Ak~il~~a~~~g 330 (360)
+..|++.|+ ....++..+|++-..-++|+.. .+.|....+..+++|
T Consensus 35 ~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~ena~~~~~~~~~~~ 94 (150)
T cd06259 35 APKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYENARFSAELLRERG 94 (150)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHHHHHHHHHHHHhcC
Confidence 556666655 3334555566654444556543 444444444445444
No 45
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=44.14 E-value=60 Score=30.86 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=32.0
Q ss_pred hhhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHh-CCceee
Q 018160 111 RAAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELL-GIQVVK 162 (360)
Q Consensus 111 ~a~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lL-g~~V~f 162 (360)
.+.-..++.|.++|+. ||+++|+|......+....+..+..|.+.+ +.++.+
T Consensus 170 ~~~~~~v~~lr~~~~D~IIvl~H~g~~~~~~~~~~~~~~~~~la~~~~~vD~Il 223 (277)
T cd07410 170 ETAKKYVPKLRAEGADVVVVLAHGGFERDLEESLTGENAAYELAEEVPGIDAIL 223 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCcCCCcccccCCccHHHHHHhcCCCCcEEE
Confidence 4555567777777888 999999998643222334444455555553 555544
No 46
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.10 E-value=93 Score=31.69 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=31.0
Q ss_pred CCCeEEEecC-CccccHHHHHHHHHHhhCeeeechHHHHHHHHH
Q 018160 259 KRPFAAIVGG-SKVSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (360)
Q Consensus 259 ~rP~vaIlGG-aKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (360)
+++.++|+|| .|=.|--.+.+.+.+.++.+++-|.-+..+...
T Consensus 344 ~~~iilI~Gg~~k~~d~~~l~~~l~~~~~~vil~G~~~~~i~~~ 387 (448)
T PRK03803 344 QGKLVLIAGGDGKGADFSPLREPVAKYVRAVVLIGRDADKIAAA 387 (448)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHhhCCEEEEECCCHHHHHHH
Confidence 3678999999 465555566666667899999988766655543
No 47
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=44.00 E-value=26 Score=32.48 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 112 AAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 112 a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
.....|+.|.++|.+++++| |||
T Consensus 24 ~~~~ai~~~~~~G~~~~iaT--GR~ 46 (272)
T PRK10530 24 ESLEALARAREAGYKVIIVT--GRH 46 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEc--CCC
Confidence 44577999999999999997 897
No 48
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=43.45 E-value=1e+02 Score=28.01 Aligned_cols=80 Identities=16% Similarity=0.276 Sum_probs=41.2
Q ss_pred cHHHHHHHhhcCCeeeecccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCC-CCeEEEecCCccccHHHH
Q 018160 199 DPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPK-RPFAAIVGGSKVSSKIGV 277 (360)
Q Consensus 199 d~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~-rP~vaIlGGaKVsdKI~v 277 (360)
+.+..+.+...+|++. |++.|. .+.|- .+- + .+ .+.+..+.+...... .|.+++.||-+-.+
T Consensus 121 ~~e~~~~~~~~~d~i~---~~~~~~---g~tg~-~~~-~--~~---~~~i~~~~~~~~~~~~~~~i~v~GGI~~~n---- 183 (220)
T PRK05581 121 PLEPLEDVLDLLDLVL---LMSVNP---GFGGQ-KFI-P--EV---LEKIRELRKLIDERGLDILIEVDGGINADN---- 183 (220)
T ss_pred CHHHHHHHHhhCCEEE---EEEECC---CCCcc-ccc-H--HH---HHHHHHHHHHHHhcCCCceEEEECCCCHHH----
Confidence 3567777888899332 444432 33432 111 1 12 223333333333210 16677889987743
Q ss_pred HHHHH-HhhCeeeechHHH
Q 018160 278 IESLL-ETCDILLLGGGMI 295 (360)
Q Consensus 278 i~~Ll-~kvD~lliGG~ma 295 (360)
+..++ .-+|.+++|.++.
T Consensus 184 v~~l~~~GaD~vvvgSai~ 202 (220)
T PRK05581 184 IKECAEAGADVFVAGSAVF 202 (220)
T ss_pred HHHHHHcCCCEEEEChhhh
Confidence 33343 3588888876643
No 49
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=43.28 E-value=32 Score=31.07 Aligned_cols=33 Identities=36% Similarity=0.488 Sum_probs=25.7
Q ss_pred CCcCcchh-H-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITDDTR-I-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~Dd~R-I-~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|+++|+.. | .+....|+.|.++|.+++++| |||
T Consensus 12 GTLl~~~~~i~~~~~~al~~l~~~G~~~~iaT--GR~ 46 (230)
T PRK01158 12 GTITDKDRRLSLKAVEAIRKAEKLGIPVILAT--GNV 46 (230)
T ss_pred CCcCCCCCccCHHHHHHHHHHHHCCCEEEEEc--CCc
Confidence 56665443 4 467788999999999999996 887
No 50
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=42.44 E-value=37 Score=31.62 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=29.5
Q ss_pred CCcCcc-hhH-hhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHH
Q 018160 102 QNITDD-TRI-RAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRL 152 (360)
Q Consensus 102 g~I~Dd-~RI-~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~L 152 (360)
|+++++ .+| .+....|+.|.++|.+++++| |||. .++.++.+.|
T Consensus 12 GTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaT--GR~~-----~~~~~~~~~l 57 (270)
T PRK10513 12 GTLLLPDHTISPAVKQAIAAARAKGVNVVLTT--GRPY-----AGVHRYLKEL 57 (270)
T ss_pred CcCcCCCCccCHHHHHHHHHHHHCCCEEEEec--CCCh-----HHHHHHHHHh
Confidence 555543 234 356788999999999999995 8873 2445554443
No 51
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=42.19 E-value=58 Score=28.96 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=30.9
Q ss_pred ccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCe-EEEEe
Q 018160 75 VGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSS 131 (360)
Q Consensus 75 i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk-VIl~S 131 (360)
..|...+|++||-||++-. .|-+..+. ..++....---++.+.++||+ ||+.+
T Consensus 40 ~~Dy~~iDVkGKIVlv~~g--~p~~~~~~--~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 40 HDDYAGLDVKGKIVVVLSG--GPAGIPSE--EGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred HhhccCCCCCCeEEEEEcC--CCCccccc--cccccccHHHHHHHHHHCCCeEEEEEe
Confidence 4455567999999999973 44221111 011111122357889999999 55554
No 52
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=41.05 E-value=89 Score=29.19 Aligned_cols=77 Identities=23% Similarity=0.290 Sum_probs=48.8
Q ss_pred CCcCcch-hHhhhhHHHHHHHHCCCeEEEEecCC-CCCCCCCCCChhhhHHHHHHHhCCceeecCCCC-CHHHHHHHhcC
Q 018160 102 QNITDDT-RIRAAVPTIKHLIQNGAKVILSSHLG-RPKGVTPKFSLAPLVPRLSELLGIQVVKADDCI-GPEVEKLVASL 178 (360)
Q Consensus 102 g~I~Dd~-RI~a~lpTI~~Lle~GAkVIl~SHlG-RPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~-G~~v~~~i~~l 178 (360)
|.+.|.. -|..+..+|+.|.++|-+++++|.-+ | |-+.++++|.+.+|.++..-+-+. +..+...++..
T Consensus 7 GvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~--------~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~ 78 (236)
T TIGR01460 7 GVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSR--------SEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQR 78 (236)
T ss_pred CccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCC--------CHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHh
Confidence 4444333 36678899999999999999998755 4 445778889888887765432222 34444445433
Q ss_pred CCC-cEEEE
Q 018160 179 PEG-GVLLL 186 (360)
Q Consensus 179 ~~G-eVlLL 186 (360)
.+| .++++
T Consensus 79 ~~~~~v~v~ 87 (236)
T TIGR01460 79 FEGEKVYVI 87 (236)
T ss_pred CCCCEEEEE
Confidence 343 35554
No 53
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=40.57 E-value=3.5e+02 Score=26.14 Aligned_cols=52 Identities=21% Similarity=0.375 Sum_probs=37.6
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHh--CCceeecCCCCCHHHH
Q 018160 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELL--GIQVVKADDCIGPEVE 172 (360)
Q Consensus 116 TI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lL--g~~V~fv~d~~G~~v~ 172 (360)
+-+-|.+-|++-+|+-|--|.+-. .-+-+-++..+...+ |..+-+ |+|+..+
T Consensus 76 S~~mL~d~G~~~viiGHSERR~~f--~Et~~~i~~Kv~~a~~~gl~pIv---CiGE~~~ 129 (242)
T cd00311 76 SAEMLKDAGAKYVIIGHSERRQYF--GETDEDVAKKVKAALEAGLTPIL---CVGETLE 129 (242)
T ss_pred CHHHHHHcCCCEEEeCcccccCcC--CCCcHHHHHHHHHHHHCCCEEEE---EeCCCHH
Confidence 567889999999999999998632 235677888887777 333333 6776554
No 54
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=40.34 E-value=47 Score=29.07 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=50.6
Q ss_pred CCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeec
Q 018160 84 KGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKA 163 (360)
Q Consensus 84 ~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv 163 (360)
.|+...+++=.|.=-.. .=.+-+-..+.|.++|+.+||++..|++- + ..|+. .|.+|...
T Consensus 33 ~g~i~~vev~~np~~~~--------~~g~G~~~a~~l~~~gvdvvi~~~iG~~a-~----------~~l~~-~GIkv~~~ 92 (121)
T COG1433 33 DGEIKNVEVIENPAASA--------EKGAGIRIAELLVDEGVDVVIASNIGPNA-Y----------NALKA-AGIKVYVA 92 (121)
T ss_pred CCcEEEEEEeecccccc--------cCcchHHHHHHHHHcCCCEEEECccCHHH-H----------HHHHH-cCcEEEec
Confidence 56777777766651110 00112235788999999999999999861 1 22322 46777776
Q ss_pred CCCCCHHHHHHHhcCCCCcEE
Q 018160 164 DDCIGPEVEKLVASLPEGGVL 184 (360)
Q Consensus 164 ~d~~G~~v~~~i~~l~~GeVl 184 (360)
+- ..++++|+.+..|+..
T Consensus 93 ~~---~~V~e~i~~~~~g~l~ 110 (121)
T COG1433 93 PG---GTVEEAIKAFLEGELE 110 (121)
T ss_pred CC---CCHHHHHHHHhcCCcc
Confidence 55 4788888888887643
No 55
>PLN02285 methionyl-tRNA formyltransferase
Probab=40.01 E-value=1.3e+02 Score=30.25 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=40.0
Q ss_pred hhHHHHHHHHC------CCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCcee--ec-CCCCCHHHHHHHhcCCC
Q 018160 113 AVPTIKHLIQN------GAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVV--KA-DDCIGPEVEKLVASLPE 180 (360)
Q Consensus 113 ~lpTI~~Lle~------GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~--fv-~d~~G~~v~~~i~~l~~ 180 (360)
++++++.|+++ +.. +.++|+-.+|.|...+..-.|+.++. +..|.|.. +. +....++..+.++++++
T Consensus 18 a~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A-~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~ 94 (334)
T PLN02285 18 AATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLA-LDRGFPPDLIFTPEKAGEEDFLSALRELQP 94 (334)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHH-HHcCCCcceecCccccCCHHHHHHHHhhCC
Confidence 67899999984 667 55678888887744445545665554 44577732 22 22223444455555544
No 56
>PLN02242 methionine gamma-lyase
Probab=39.55 E-value=3.3e+02 Score=27.99 Aligned_cols=194 Identities=18% Similarity=0.191 Sum_probs=89.0
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCcccc
Q 018160 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEE 195 (360)
Q Consensus 116 TI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE 195 (360)
.+.-|++.|-+||+..+ .-| .....+...+.+..|.++.+++-.--+.+++++.. ..-.++++||.-.-.+.
T Consensus 107 al~al~~~GD~Vl~~~~-~Y~------~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~-~~tklV~lesp~NPtG~ 178 (418)
T PLN02242 107 VLLQLCSSGGHVVASNT-LYG------GTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVP-GKTKVLYFESISNPTLT 178 (418)
T ss_pred HHHHHhCCCCEEEEcCC-cHH------HHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCc-CCCEEEEEecCCCCCCc
Confidence 45556777877765432 111 01222334456668888888853322344444421 12468999987654444
Q ss_pred ccCcHHHHHHHhhc-CCeeeecccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccH
Q 018160 196 EKNDPEFAKKLASL-ADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSK 274 (360)
Q Consensus 196 ~~nd~~fa~~LA~l-~DvyVNDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdK 274 (360)
..+-+++++...++ +-+.|.++|+...- . +.-.|.-+ -+.-++|.+..+-... ||.=+.++
T Consensus 179 v~dl~~I~~la~~~gi~livDea~~~~~~-~-----------~~~~g~di--vv~S~SK~l~g~g~~~----gG~iv~~~ 240 (418)
T PLN02242 179 VADIPELARIAHEKGVTVVVDNTFAPMVL-S-----------PARLGADV--VVHSISKFISGGADII----AGAVCGPA 240 (418)
T ss_pred ccCHHHHHHHHHHhCCEEEEECCCCccCC-C-----------HHHcCCcE--EEEeCccccCCCCCce----EEEEEcCH
Confidence 33333444322222 33556666642211 0 00001000 0112344444333332 22222222
Q ss_pred HHHHHHHHHhhC--eeeechHHH--HHHHHHcCCccccccccccchHHHHHHHHHHHhCCCeEEccc
Q 018160 275 IGVIESLLETCD--ILLLGGGMI--FTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPS 337 (360)
Q Consensus 275 I~vi~~Ll~kvD--~lliGG~ma--~tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~LPv 337 (360)
.+++.+....+ ....|..|. ..++.+.|...=.-.++ ...+.|..+.+.-++.+.+++.|-
T Consensus 241 -~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~tl~~r~~-~~~~~a~~la~~L~~~~~~V~yP~ 305 (418)
T PLN02242 241 -ELVNSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRMK-EHCRRAMEYAKRMKELGLKVIYPG 305 (418)
T ss_pred -HHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCCcHHHHHH-HHHHHHHHHHHHHHhCCCEEECCC
Confidence 34555544433 234454443 45555555431111112 235666666666677777888775
No 57
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.37 E-value=43 Score=36.20 Aligned_cols=89 Identities=24% Similarity=0.297 Sum_probs=60.4
Q ss_pred HHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCH----HHHHHHhcCC-CC-cEEEEecccC
Q 018160 118 KHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGP----EVEKLVASLP-EG-GVLLLENVRF 191 (360)
Q Consensus 118 ~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~----~v~~~i~~l~-~G-eVlLLENlRF 191 (360)
-+|++++.+|+|..-=----|- ---|.-|+++|+.|.|.-|.+-+--.|. -+.++|+..+ +| ||+|.+-
T Consensus 400 yWLlqNkfrVLIAACDTFRsGA--vEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDT--- 474 (587)
T KOG0781|consen 400 YWLLQNKFRVLIAACDTFRSGA--VEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDT--- 474 (587)
T ss_pred HHHHhCCceEEEEeccchhhhH--HHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEec---
Confidence 4789999999887632111120 0138899999999998777765443433 3566675554 34 8888875
Q ss_pred ccccccCcHHHHHHHhhcCCe
Q 018160 192 YKEEEKNDPEFAKKLASLADL 212 (360)
Q Consensus 192 ~~eE~~nd~~fa~~LA~l~Dv 212 (360)
.|-..|++.+-..|+++.++
T Consensus 475 -AGR~~~~~~lm~~l~k~~~~ 494 (587)
T KOG0781|consen 475 -AGRMHNNAPLMTSLAKLIKV 494 (587)
T ss_pred -cccccCChhHHHHHHHHHhc
Confidence 55667888888888888773
No 58
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=37.96 E-value=97 Score=30.13 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=39.3
Q ss_pred hhcCCCCCeEEEecCCccc----------cHHHHHHHHHH--hhCeeeechH----------HHHHHHHHcCCccccccc
Q 018160 254 AVSSPKRPFAAIVGGSKVS----------SKIGVIESLLE--TCDILLLGGG----------MIFTFYKAQGISVGSSLV 311 (360)
Q Consensus 254 ~~~~p~rP~vaIlGGaKVs----------dKI~vi~~Ll~--kvD~lliGG~----------ma~tFL~A~G~~IG~Slv 311 (360)
+-+-|+++.+.|+|+++.. +.+..--.|.+ ++.+||+.|+ ..--.|.++|++-..=++
T Consensus 39 ~~~~p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~ 118 (239)
T PRK10834 39 LQDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVL 118 (239)
T ss_pred HhhCCCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEe
Confidence 3456889999999998752 22222233333 6788888886 223455567877766666
Q ss_pred cccc
Q 018160 312 EEDK 315 (360)
Q Consensus 312 E~d~ 315 (360)
|...
T Consensus 119 e~~s 122 (239)
T PRK10834 119 DYAG 122 (239)
T ss_pred cCCC
Confidence 7654
No 59
>PLN02461 Probable pyruvate kinase
Probab=37.02 E-value=49 Score=35.57 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=65.7
Q ss_pred hhHHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHH-Hh-----cCCCCcEE
Q 018160 113 AVPTIKHLIQNGAKVI--LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-VA-----SLPEGGVL 184 (360)
Q Consensus 113 ~lpTI~~Lle~GAkVI--l~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~-i~-----~l~~GeVl 184 (360)
+..+|+.|+++|..|+ =+||-. + +.....-...+..++.+|++|...-|.-||+++-- ++ .++.|+.+
T Consensus 35 ~~e~l~~li~aGm~v~RlN~SHg~-~---e~h~~~i~~vr~~~~~~g~~i~Il~Dl~GPkIR~g~~~~~~~i~l~~G~~v 110 (511)
T PLN02461 35 SVPMLEKLLRAGMNVARFNFSHGS-H---EYHQETLDNLRQAMANTGILCAVMLDTKGPEIRTGFLKDGKPVQLKQGQEI 110 (511)
T ss_pred CHHHHHHHHHcCCCEEEEECCCCC-H---HHHHHHHHHHHHHHHHcCCCeEEEeeCCCCceeccccCCCCceecCCCCEE
Confidence 4579999999998853 468833 2 12223334456666778999999999999887732 11 26677777
Q ss_pred EEecccCccccc----cCcHHHHHHHhhcCCeeeeccc
Q 018160 185 LLENVRFYKEEE----KNDPEFAKKLASLADLYVNDAF 218 (360)
Q Consensus 185 LLENlRF~~eE~----~nd~~fa~~LA~l~DvyVNDAF 218 (360)
.|-.=.-+.+++ -+.++|.+.+...--||++|..
T Consensus 111 ~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~ 148 (511)
T PLN02461 111 TITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCADGT 148 (511)
T ss_pred EEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEeCCE
Confidence 663210011111 1357899998888889999854
No 60
>TIGR03639 cas1_NMENI CRISPR-associated endonuclease Cas1, NMENI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.
Probab=36.00 E-value=25 Score=34.40 Aligned_cols=57 Identities=21% Similarity=0.440 Sum_probs=41.9
Q ss_pred CCCCCeEEEEec---cCCCCCC-CCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCC
Q 018160 82 DLKGKKVFVRAD---LNVPLDD-NQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG 138 (360)
Q Consensus 82 dl~gKrVlvRvD---~NVPl~~-~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg 138 (360)
..++.++.|+-| ..+|+.+ +..++....+.-+-+.|++|.++|-.|+++++.|+|.|
T Consensus 13 ~~~~~~l~v~~~~~~~~iP~~~i~~Ivi~g~~~~lst~~l~~l~~~~I~v~f~~~~G~~~g 73 (278)
T TIGR03639 13 SLKLNQLVIKKDGEEVTLPLEDIDVILIENPQITISSALLSALAENNIALIFCDEKHLPVG 73 (278)
T ss_pred EEECCEEEEEECCceEEEehHHccEEEEeCCCEEEcHHHHHHHHHCCCeEEEECCCCCcce
Confidence 345556666654 2257753 23444445778888999999999999999999999987
No 61
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=35.98 E-value=2.2e+02 Score=29.58 Aligned_cols=111 Identities=22% Similarity=0.190 Sum_probs=63.5
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCC-HHHHHHHhcCCCCcEEEEecccCccc
Q 018160 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIG-PEVEKLVASLPEGGVLLLENVRFYKE 194 (360)
Q Consensus 116 TI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G-~~v~~~i~~l~~GeVlLLENlRF~~e 194 (360)
+|..|++.|-+||+..+. + ..........-+..|.+|.|++|... +.++++++ ++..++++|+.-.-.+
T Consensus 100 al~all~~Gd~Vv~~~~~-----y---~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~--~~tklV~ie~~sNp~G 169 (436)
T PRK07812 100 AILNLAGAGDHIVSSPRL-----Y---GGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVR--PNTKAFFAETISNPQI 169 (436)
T ss_pred HHHHHhCCCCEEEEeCCc-----c---hHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCC--CCCeEEEEECCCCCCC
Confidence 556678888887766431 1 11111122222346889999975432 23343333 3456899999887666
Q ss_pred cccCcHHHHHHHhhcCCeeeecc-ccc-------ccccCcchhccccccC
Q 018160 195 EEKNDPEFAKKLASLADLYVNDA-FGT-------AHRAHASTEGVTKYLK 236 (360)
Q Consensus 195 E~~nd~~fa~~LA~l~DvyVNDA-Fgt-------aHRahAS~~gi~~~l~ 236 (360)
+..+=+++++...++.=.+|.|+ |++ .|-+.-.+....|++.
T Consensus 170 ~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lg 219 (436)
T PRK07812 170 DVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLG 219 (436)
T ss_pred eecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccC
Confidence 66555566655555544556666 655 3455555566667663
No 62
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=35.72 E-value=1.1e+02 Score=23.79 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=36.1
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeec
Q 018160 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKA 163 (360)
Q Consensus 116 TI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv 163 (360)
-+++..+.++..|++.+-+++. -..+-+..++++|-+...+||..+
T Consensus 94 i~~~~~~~~~dliv~G~~~~~~--~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 94 IIEFAEEHNADLIVMGSRGRSG--LERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHTTCSEEEEESSSTTS--TTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred hhhccccccceeEEEeccCCCC--ccCCCcCCHHHHHHHcCCCCEEEe
Confidence 4667778899988888888653 233668899999999999998765
No 63
>PRK08114 cystathionine beta-lyase; Provisional
Probab=35.48 E-value=2.1e+02 Score=29.51 Aligned_cols=105 Identities=18% Similarity=0.296 Sum_probs=62.2
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCcccc
Q 018160 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEE 195 (360)
Q Consensus 116 TI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE 195 (360)
++.-|+..|-+||+..+. .-++....+.+-+..|.+|.|++-...+.++++++. +-.++.+|..----.+
T Consensus 93 ~~~~ll~~GD~Vv~~~~~--------Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~--~TrlV~~EtpsNp~~~ 162 (395)
T PRK08114 93 AILAFVEQGDHVLMTGTA--------YEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQP--NTKVVFLESPGSITME 162 (395)
T ss_pred HHHHHcCCCCEEEEeCCC--------cHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCC--CceEEEEECCCCCCCE
Confidence 455567788876654221 112223333333447999999986556667766642 4468888876544444
Q ss_pred ccCcHHHHHHHhhc---CCeeeecccccccccCcchhc
Q 018160 196 EKNDPEFAKKLASL---ADLYVNDAFGTAHRAHASTEG 230 (360)
Q Consensus 196 ~~nd~~fa~~LA~l---~DvyVNDAFgtaHRahAS~~g 230 (360)
..+=++.++..-+. +-++|...|++.+--++.-.|
T Consensus 163 v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~G 200 (395)
T PRK08114 163 VHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFG 200 (395)
T ss_pred eecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcC
Confidence 44434555554454 567888889888765544433
No 64
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=35.47 E-value=1.5e+02 Score=31.66 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=44.0
Q ss_pred CCCCCeEEEEeccCC-CCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEe---cCCCCCCC--CCCCChhhhHHHHHHH
Q 018160 82 DLKGKKVFVRADLNV-PLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS---HLGRPKGV--TPKFSLAPLVPRLSEL 155 (360)
Q Consensus 82 dl~gKrVlvRvD~NV-Pl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~S---HlGRPkg~--~~~~SL~pva~~Ls~l 155 (360)
||+||+|||-.==.. |||+=--|++..-=+--.---+.+..+||+|.|++ ++..|.|. -+.-|-+...+.+.+.
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~~p~~v~~i~V~ta~eM~~av~~~ 332 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLADPQGVKVIHVESARQMLAAVEAA 332 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCCCCCCceEEEecCHHHHHHHHHhh
Confidence 699999998754332 44421123333322333334577888999999998 45455442 2233555555555555
Q ss_pred hCCc
Q 018160 156 LGIQ 159 (360)
Q Consensus 156 Lg~~ 159 (360)
+..+
T Consensus 333 ~~~D 336 (475)
T PRK13982 333 LPAD 336 (475)
T ss_pred CCCC
Confidence 4433
No 65
>PRK06247 pyruvate kinase; Provisional
Probab=35.43 E-value=38 Score=36.04 Aligned_cols=204 Identities=21% Similarity=0.271 Sum_probs=115.6
Q ss_pred hHHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHH-----HhcCCCCcEEEE
Q 018160 114 VPTIKHLIQNGAKVI--LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-----VASLPEGGVLLL 186 (360)
Q Consensus 114 lpTI~~Lle~GAkVI--l~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~-----i~~l~~GeVlLL 186 (360)
..+|+.|++.|..|. =+||-... ....+-...+.+++.+|++|...-|.-||+++-- --.|+.||.+.|
T Consensus 20 ~e~l~~li~aGm~v~RlN~SHg~~e----~~~~~i~~vr~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~~i~l~~G~~~~l 95 (476)
T PRK06247 20 EDMIRKLVEAGADVFRLNFSHGDHD----DHRELYKRIREVEDETGRPIGILADLQGPKLRLGRFADGKVQLANGQTFRL 95 (476)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHH----HHHHHHHHHHHHHHHcCCCeeEEEeCCCCceeccccCCCcEeccCCCEEEE
Confidence 468999999998754 46775432 2334445556777888888888888888876521 123667777666
Q ss_pred ecccCccccc---cCcHHHHHHHhhcCCeeeeccccccccc--C-c-------------chhccccccCcc--chhhhHH
Q 018160 187 ENVRFYKEEE---KNDPEFAKKLASLADLYVNDAFGTAHRA--H-A-------------STEGVTKYLKPS--VAGFLLQ 245 (360)
Q Consensus 187 ENlRF~~eE~---~nd~~fa~~LA~l~DvyVNDAFgtaHRa--h-A-------------S~~gi~~~l~ps--~aG~Lme 245 (360)
---.+...++ -+.++|.+.+...--||++|..=...=- . - |--|+. +|.. -.-.|=|
T Consensus 96 ~~~~~~~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~~~~~i~~~v~~~G~l~~~Kgvn--~p~~~~~~p~lte 173 (476)
T PRK06247 96 DVDDAPGDHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKGVS--LPGTVLSVSALTE 173 (476)
T ss_pred EecccCCCCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCCccc--cCCcccCCCCCCH
Confidence 3222111111 1356788888888888888874222110 0 0 000111 1000 0112335
Q ss_pred HHHHHHHhhhcCCCCCeEEE---------------ecC-----CccccHHHH--HHHHHHhhCeeeechHHHHHHHHHcC
Q 018160 246 KELDYLVGAVSSPKRPFAAI---------------VGG-----SKVSSKIGV--IESLLETCDILLLGGGMIFTFYKAQG 303 (360)
Q Consensus 246 kEl~~L~~~~~~p~rP~vaI---------------lGG-----aKVsdKI~v--i~~Ll~kvD~lliGG~ma~tFL~A~G 303 (360)
|.++.|.-.+++. =-|+++ +|+ +||.++-++ |+.++..+|.|++|=| -.|
T Consensus 174 kD~~di~f~~~~~-vD~ia~SFVr~a~Di~~~r~~l~~~~~iiaKIEt~eav~nldeI~~~~DgImVaRG-------DLg 245 (476)
T PRK06247 174 KDRADLEFALELG-VDWVALSFVQRPEDVEEVRKIIGGRVPVMAKIEKPQAIDRLEAIVEASDAIMVARG-------DLG 245 (476)
T ss_pred HHHHHHHHHHHcC-CCEEEECCCCCHHHHHHHHHHhhhcCeEEEEECCHHHHHhHHHHHHHcCEEEEccc-------hhc
Confidence 5555554444321 122222 122 566655443 5666778999999743 245
Q ss_pred CccccccccccchHHHHHHHHHHHhCCCeEEc
Q 018160 304 ISVGSSLVEEDKLDLATTLLAKAKAKGVNLLL 335 (360)
Q Consensus 304 ~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~L 335 (360)
.++|- ++....-++|+++|++.|+.++.
T Consensus 246 ve~g~----~~v~~~qk~ii~~~~~~gkpvI~ 273 (476)
T PRK06247 246 VEVPL----EQVPLIQKRIIRAARRAGKPVVV 273 (476)
T ss_pred cccCH----HHHHHHHHHHHHHHHHhCCCEEE
Confidence 55553 55566888999999998876654
No 66
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=35.27 E-value=87 Score=29.47 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=35.6
Q ss_pred HhhhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceee
Q 018160 110 IRAAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVK 162 (360)
Q Consensus 110 I~a~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~f 162 (360)
++.....|+.+. +++. ||++.|+|......+.-..+.+|+.|-+ -|.++.+
T Consensus 170 ~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lid-aGaDiIi 221 (250)
T PF09587_consen 170 IERIKEDIREAR-KKADVVIVSLHWGIEYENYPTPEQRELARALID-AGADIII 221 (250)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHH-cCCCEEE
Confidence 477888888888 5565 9999999987544455556666666655 4666555
No 67
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=34.51 E-value=1.9e+02 Score=27.85 Aligned_cols=101 Identities=21% Similarity=0.300 Sum_probs=70.3
Q ss_pred eEEEEeccCCCC-----C-CCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCce
Q 018160 87 KVFVRADLNVPL-----D-DNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQV 160 (360)
Q Consensus 87 rVlvRvD~NVPl-----~-~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V 160 (360)
.|.-|.|.. |. + ..+...+...+++++.--+.+.+.||..|++.+. | ...++++.+.+..|+
T Consensus 127 ~ViaRtd~~-pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~---------~e~~~~i~~~~~~P~ 194 (240)
T cd06556 127 PVIAHTGLT-PQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--P---------VELAKQITEALAIPL 194 (240)
T ss_pred eEEEEeCCc-hhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--C---------HHHHHHHHHhCCCCE
Confidence 677799983 31 1 0123445667888998899999999999999765 3 356778888888888
Q ss_pred eecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCC
Q 018160 161 VKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLAD 211 (360)
Q Consensus 161 ~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~LA~l~D 211 (360)
-+. +-|. --+|++|++..+.=+.++ .-|.|+|++..+..
T Consensus 195 ~~~--gag~--------~~dgq~lv~~d~lg~~~~--~~p~f~~~~~~~~~ 233 (240)
T cd06556 195 AGI--GAGS--------GTDGQFLVLADAFGITGG--HIPKFAKNFHAETG 233 (240)
T ss_pred EEE--ecCc--------CCCceEEeHHhhhcccCC--CCCchHHHHhhhHH
Confidence 774 2221 347899999988644432 36788888776543
No 68
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=34.23 E-value=1.4e+02 Score=30.24 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=33.1
Q ss_pred HHHHHHhhhcCCCCCeEEEecCC-ccccHHHHHHHHHHhhCeeeechHHHHHHHHH
Q 018160 247 ELDYLVGAVSSPKRPFAAIVGGS-KVSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (360)
Q Consensus 247 El~~L~~~~~~p~rP~vaIlGGa-KVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (360)
+++....+++.-+++.++|+||. |-.|-=.+.+.+.+.++.+++-|.-+..+...
T Consensus 319 n~~a~~~al~~~~~~ii~I~Gg~~~~~d~~~~~~~l~~~~~~v~~~G~~~~~l~~~ 374 (433)
T TIGR01087 319 NVHATLAALSAFDNPVILIVGGDDKGADFSPLAPAAAGKVKAVLAIGEDAAKIAPL 374 (433)
T ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHhhCCEEEEECCCHHHHHHH
Confidence 44444445544445799999985 22222234454555677898888877666554
No 69
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=33.80 E-value=1e+02 Score=26.42 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=40.2
Q ss_pred CCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCe--EEEEecCCCCCC----CCCCCChhhhHHHHHH
Q 018160 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK--VILSSHLGRPKG----VTPKFSLAPLVPRLSE 154 (360)
Q Consensus 82 dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk--VIl~SHlGRPkg----~~~~~SL~pva~~Ls~ 154 (360)
+++||.|++=.++.-|.+ ..+-+-+=+|..+.+.||+ ++++|+++-=.. .-+-+|.+-+|+-|+.
T Consensus 44 ~v~g~dv~iiqs~~~~~n--------d~lmeLll~i~a~r~~~a~~i~~ViPYl~YaRQDr~~~ge~isak~~a~lL~~ 114 (116)
T PF13793_consen 44 SVRGKDVFIIQSTSPPVN--------DNLMELLLLIDALRRAGAKRITLVIPYLPYARQDRRKPGEPISAKVVAKLLSA 114 (116)
T ss_dssp --TTSEEEEE---SSSHH--------HHHHHHHHHHHHHHHTTBSEEEEEESS-TTTTSSSSSTTC--HHHHHHHHHHH
T ss_pred cccCCceEEEEecCCchh--------HHHHHHHHHHHHHHHcCCcEEEEeccchhhhhhccCCCCCcchHHHHHHHHHh
Confidence 577888888766665443 4678888899999999987 778888763321 2234677777776654
No 70
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=33.48 E-value=95 Score=27.70 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=32.6
Q ss_pred cCcchhH----hhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHH
Q 018160 104 ITDDTRI----RAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSE 154 (360)
Q Consensus 104 I~Dd~RI----~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~ 154 (360)
+++..++ ....++|+.|.++|.++.|+|+..++. ...++.+.+.+++.+
T Consensus 34 ~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~--~~~~~~~~~~~~i~~ 86 (166)
T TIGR01664 34 PTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIG--RGKLSAESFKNKIEA 86 (166)
T ss_pred cCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccc--cCcccHHHHHHHHHH
Confidence 4455555 458899999999999999999976542 123355444333333
No 71
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=33.41 E-value=2.2e+02 Score=27.21 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred cCCCCcEEEEecccCcccc-ccCcHHHHHHHhhcC--CeeeecccccccccCcchhccccccCccchhhhHHHHHHHHHh
Q 018160 177 SLPEGGVLLLENVRFYKEE-EKNDPEFAKKLASLA--DLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVG 253 (360)
Q Consensus 177 ~l~~GeVlLLENlRF~~eE-~~nd~~fa~~LA~l~--DvyVNDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~ 253 (360)
.+++|.++-+.. |.... ..+.-+++++|...+ .+||-| + +.+|..-..-++.+.+
T Consensus 11 D~~~G~~V~~~~--~~~~~~~~dp~~~a~~~~~~g~~~l~i~D------------------l--~~~~~~~~~n~~~i~~ 68 (258)
T PRK01033 11 LLKDGGLVKTVK--FKDPRYIGDPINAVRIFNEKEVDELIVLD------------------I--DASKRGSEPNYELIEN 68 (258)
T ss_pred EEECCcEEEeec--ccCceeCCCHHHHHHHHHHcCCCEEEEEE------------------C--CCCcCCCcccHHHHHH
Q ss_pred hhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccccccchHHHHHHHHHHHhCCCeE
Q 018160 254 AVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNL 333 (360)
Q Consensus 254 ~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I 333 (360)
+.+.+.-|+ ++|| -+.+--.+.+-+-.-+|.+++| ..++|. .+.++++.++.... +|
T Consensus 69 i~~~~~~pv--~~gG-Gi~s~~d~~~l~~~G~~~vvig----------------s~~~~~--~~~~~~~~~~~~~~--~i 125 (258)
T PRK01033 69 LASECFMPL--CYGG-GIKTLEQAKKIFSLGVEKVSIN----------------TAALED--PDLITEAAERFGSQ--SV 125 (258)
T ss_pred HHHhCCCCE--EECC-CCCCHHHHHHHHHCCCCEEEEC----------------hHHhcC--HHHHHHHHHHhCCC--cE
Q ss_pred EccceE
Q 018160 334 LLPSDV 339 (360)
Q Consensus 334 ~LPvD~ 339 (360)
++++|+
T Consensus 126 ~vsiD~ 131 (258)
T PRK01033 126 VVSIDV 131 (258)
T ss_pred EEEEEE
No 72
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=33.10 E-value=44 Score=33.10 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHCCCe-EEEEecCC
Q 018160 112 AAVPTIKHLIQNGAK-VILSSHLG 134 (360)
Q Consensus 112 a~lpTI~~Lle~GAk-VIl~SHlG 134 (360)
+.-.+++.|.++|+. ||++||+|
T Consensus 195 ~~~~~v~~Lr~~gvD~II~LsH~g 218 (313)
T cd08162 195 QIQPSIDALTAQGINKIILLSHLQ 218 (313)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccc
Confidence 345678888889998 99999996
No 73
>PRK10799 metal-binding protein; Provisional
Probab=32.97 E-value=37 Score=32.39 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=35.5
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCC
Q 018160 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADD 165 (360)
Q Consensus 116 TI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d 165 (360)
+.....++|-.+|.+.|.. .+.+-++.++++|++.++.+|.|++.
T Consensus 199 ~~~~A~~~gl~li~~GH~~-----sE~~~~~~la~~L~~~~~~~~~~i~~ 243 (247)
T PRK10799 199 TIHSAREQGLHFYAAGHHA-----TERGGIRALSEWLNENTDLDVTFIDI 243 (247)
T ss_pred HHHHHHHCCCeEEEcCchH-----HHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 4566667777777777764 35667889999999999999999864
No 74
>PTZ00174 phosphomannomutase; Provisional
Probab=32.80 E-value=55 Score=30.72 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 112 AAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 112 a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
+...+|+.+.++|.+++++| |||
T Consensus 26 ~~~~ai~~l~~~Gi~~viaT--GR~ 48 (247)
T PTZ00174 26 EMKDTLAKLKSKGFKIGVVG--GSD 48 (247)
T ss_pred HHHHHHHHHHHCCCEEEEEc--CCC
Confidence 34578999999999999998 787
No 75
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.57 E-value=1.3e+02 Score=30.35 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=26.7
Q ss_pred CCCeEEEecCCc-cccHHHHHHHHHHhhCeeeechHHHHHHHH
Q 018160 259 KRPFAAIVGGSK-VSSKIGVIESLLETCDILLLGGGMIFTFYK 300 (360)
Q Consensus 259 ~rP~vaIlGGaK-VsdKI~vi~~Ll~kvD~lliGG~ma~tFL~ 300 (360)
+++.++|+||.. -.|-=.+++.+.+ +|.+++.|.=+..+..
T Consensus 342 ~~~ii~I~g~~~~~~~~~~l~~~l~~-~~~v~~~G~~~~~l~~ 383 (447)
T PRK02472 342 NQPVVLLAGGLDRGNEFDELVPYLKN-VKAMVVFGETAEKLAR 383 (447)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHhc-cCEEEEECCCHHHHHH
Confidence 467999999964 2333345555554 9999888765544443
No 76
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=32.57 E-value=52 Score=29.72 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=27.3
Q ss_pred CCcCcchh--HhhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITDDTR--IRAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~Dd~R--I~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|.++|+.+ +.....+|+.|.++|-+++++| |||
T Consensus 8 GTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~T--gR~ 42 (221)
T TIGR02463 8 GTLLDSHSYDWQPAAPWLTRLQEAGIPVILCT--SKT 42 (221)
T ss_pred CCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEc--CCC
Confidence 77787644 5667899999999999999998 777
No 77
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=32.08 E-value=1.1e+02 Score=29.71 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=35.5
Q ss_pred CeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecC
Q 018160 86 KKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHL 133 (360)
Q Consensus 86 KrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHl 133 (360)
|++++.+=-++=-+++|. .|..||+.....|..+.++|-+|||.||=
T Consensus 10 ~~iViK~Ggs~l~~~~~~-~~~~~i~~~~~~I~~~~~~g~~vvlV~Sg 56 (266)
T PRK12314 10 KRIVIKVGSSTLSYENGK-INLERIEQLVFVISDLMNKGKEVILVSSG 56 (266)
T ss_pred CEEEEEeCCCeeeCCCCC-cCHHHHHHHHHHHHHHHHCCCeEEEEeeC
Confidence 456666555554433332 48889999999999999999999999883
No 78
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=31.64 E-value=50 Score=31.84 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=20.6
Q ss_pred HhhhhHHHHHHHHCCCe-EEEEecCCCC
Q 018160 110 IRAAVPTIKHLIQNGAK-VILSSHLGRP 136 (360)
Q Consensus 110 I~a~lpTI~~Lle~GAk-VIl~SHlGRP 136 (360)
+.+.-..++.|.++|+. ||+++|+|..
T Consensus 168 ~~~~~~~v~~lr~~~~D~II~l~H~G~~ 195 (281)
T cd07409 168 IEAAQKEADKLKAQGVNKIIALSHSGYE 195 (281)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccCch
Confidence 34455567778788988 8899999975
No 79
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=31.61 E-value=1.5e+02 Score=29.39 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=46.9
Q ss_pred CCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCe--EEEEecCCCCC-----CCCCCCChhhhHHHHHH
Q 018160 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK--VILSSHLGRPK-----GVTPKFSLAPLVPRLSE 154 (360)
Q Consensus 82 dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk--VIl~SHlGRPk-----g~~~~~SL~pva~~Ls~ 154 (360)
++.||.|++-.+++-|.+ ..+-+-+=.+..|.+.||| ++++|.++-=. ...+.+|.+-+|+-|+.
T Consensus 44 ~v~g~~V~ii~s~~~~~n--------d~l~eLll~~~alr~~ga~~i~lViPYl~YsRQDr~~~~ge~isak~~a~lL~~ 115 (309)
T PRK01259 44 NVRGKDVFIIQSTCAPTN--------DNLMELLIMIDALKRASAGRITAVIPYFGYARQDRKARSRVPITAKLVANLLET 115 (309)
T ss_pred CCCCCEEEEECCCCCCCc--------HHHHHHHHHHHHHHHcCCceEEEEeeccccchhhhhhccCCCchHHHHHHHHhh
Confidence 579999999888765543 2577888899999999997 67888865322 11235677777777765
Q ss_pred H
Q 018160 155 L 155 (360)
Q Consensus 155 l 155 (360)
.
T Consensus 116 ~ 116 (309)
T PRK01259 116 A 116 (309)
T ss_pred c
Confidence 3
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=31.52 E-value=1.6e+02 Score=26.79 Aligned_cols=61 Identities=23% Similarity=0.230 Sum_probs=34.4
Q ss_pred cccCccCCCCCCCeEEEEeccCCCCCCCC--CcCcc---hhHhhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 74 SVGELSGADLKGKKVFVRADLNVPLDDNQ--NITDD---TRIRAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 74 ~i~~l~d~dl~gKrVlvRvD~NVPl~~~g--~I~Dd---~RI~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
...|...+|++||.|++-. |-|-..++ ..... ++--..---.+.+.++||+=||+-|--.+
T Consensus 39 ~~dDy~g~DVkGKiVvvl~--~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~~ 104 (157)
T cd04821 39 GWDDYKGLDVKGKTVVILV--NDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETEP 104 (157)
T ss_pred CcccccCCCcCCcEEEEEc--CCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 4557777899999998754 34532110 00111 11112223567899999996666665433
No 81
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=31.34 E-value=86 Score=34.77 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=41.9
Q ss_pred CCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEec----CCCCC
Q 018160 85 GKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSH----LGRPK 137 (360)
Q Consensus 85 gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SH----lGRPk 137 (360)
-||++|.+=-++=-+++|. .|..+|......|..|.++|.+|||.|| .|++.
T Consensus 7 ~~~iViKiGss~lt~~~~~-~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~ 62 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDGR-LALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQR 62 (715)
T ss_pred CCEEEEEeCcceeECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHH
Confidence 4788888877775554444 6888999999999999999999999998 56653
No 82
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=31.05 E-value=2.7e+02 Score=22.03 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=56.6
Q ss_pred CcCcchhHhhhhHHHHHHHH-CCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCC
Q 018160 103 NITDDTRIRAAVPTIKHLIQ-NGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPE 180 (360)
Q Consensus 103 ~I~Dd~RI~a~lpTI~~Lle-~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~ 180 (360)
+|.-.+|.+=++-.++++-. .+.+ ++|.+=.. ..|.++-.++|.. .+.|+-++++.+.+.+.+.++.+..
T Consensus 2 Ri~G~dRyeTs~~va~~~~~~~~~~~v~ia~g~~----~~Dalsa~~~a~~----~~~PIll~~~~l~~~~~~~l~~~~~ 73 (92)
T PF04122_consen 2 RISGADRYETSAKVAKKFYPDNKSDKVYIASGDN----FADALSASPLAAK----NNAPILLVNNSLPSSVKAFLKSLNI 73 (92)
T ss_pred CCCCCCHHHHHHHHHHHhcccCCCCEEEEEeCcc----hhhhhhhHHHHHh----cCCeEEEECCCCCHHHHHHHHHcCC
Confidence 35556788888888888654 2444 66664322 3355565555544 7899999999899999999999988
Q ss_pred CcEEEEecc
Q 018160 181 GGVLLLENV 189 (360)
Q Consensus 181 GeVlLLENl 189 (360)
..++++-..
T Consensus 74 ~~v~iiGg~ 82 (92)
T PF04122_consen 74 KKVYIIGGE 82 (92)
T ss_pred CEEEEECCC
Confidence 888887543
No 83
>PRK08187 pyruvate kinase; Validated
Probab=30.95 E-value=36 Score=36.29 Aligned_cols=107 Identities=23% Similarity=0.275 Sum_probs=71.5
Q ss_pred chhHhhhhH--------HHHHHHHCCCeE--EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHH-H
Q 018160 107 DTRIRAAVP--------TIKHLIQNGAKV--ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-V 175 (360)
Q Consensus 107 d~RI~a~lp--------TI~~Lle~GAkV--Il~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~-i 175 (360)
.|||-.++| +|+.|++.|..| |=+||-+ | +....+-...+..++.+|++|...-|.-||+++-- +
T Consensus 134 ~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~-~---e~~~~~i~~vR~a~~~~g~~i~Il~DL~GPKIRtG~l 209 (493)
T PRK08187 134 RTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDD-P---AAWQAMIGHLRQAERATGRRCKILMDLAGPKIRTGAV 209 (493)
T ss_pred CceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCC-H---HHHHHHHHHHHHHHHHcCCCeEEEEeCCCCceeeccc
Confidence 355666653 899999999885 4567854 2 22334556667888889999999999999887632 1
Q ss_pred ------hcCCCCcEEEEecccCcc-cc-c-----cCcHHHHHHHhhcCCeeeecc
Q 018160 176 ------ASLPEGGVLLLENVRFYK-EE-E-----KNDPEFAKKLASLADLYVNDA 217 (360)
Q Consensus 176 ------~~l~~GeVlLLENlRF~~-eE-~-----~nd~~fa~~LA~l~DvyVNDA 217 (360)
-.|+.||.+.|-.-.-.. ++ . -+-++|.+.+..---||++|.
T Consensus 210 ~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~IlidDG 264 (493)
T PRK08187 210 AGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWIDDG 264 (493)
T ss_pred CCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEeCC
Confidence 147788887774322111 10 1 124678888888888999885
No 84
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=30.95 E-value=94 Score=32.22 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=44.4
Q ss_pred CCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEe---------cCCCCCC
Q 018160 85 GKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS---------HLGRPKG 138 (360)
Q Consensus 85 gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~S---------HlGRPkg 138 (360)
-||+.|.+=-++=.+.+|. .|-.+|.....+|..|.++|.+|||.| |||.|+.
T Consensus 6 ~~riVvKiGSs~Lt~~~g~-l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~r 67 (369)
T COG0263 6 ARRIVVKIGSSSLTDGTGG-LDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPKR 67 (369)
T ss_pred ceEEEEEECcceeeCCCCC-cCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCCC
Confidence 3789999988887765554 699999999999999999999999987 4777754
No 85
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=30.85 E-value=1e+02 Score=29.35 Aligned_cols=52 Identities=19% Similarity=0.156 Sum_probs=36.4
Q ss_pred CCCCeEEEEeccCCCCCCC-C-------CcCcchhHhhhhHHHHHHHHCCCeEEEEecCC
Q 018160 83 LKGKKVFVRADLNVPLDDN-Q-------NITDDTRIRAAVPTIKHLIQNGAKVILSSHLG 134 (360)
Q Consensus 83 l~gKrVlvRvD~NVPl~~~-g-------~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlG 134 (360)
..+|.=.+.+|++-.+... + ...|+.-+..+..+|++|.++|.+++++||-.
T Consensus 154 ~~~~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~ 213 (300)
T PHA02530 154 DPGLPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRD 213 (300)
T ss_pred CCCCCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCC
Confidence 3444445567888777531 1 11256667788899999999999999999643
No 86
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=30.82 E-value=3e+02 Score=24.92 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=60.6
Q ss_pred eEEEEeccCCCCCC-CCCcCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecC
Q 018160 87 KVFVRADLNVPLDD-NQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKAD 164 (360)
Q Consensus 87 rVlvRvD~NVPl~~-~g~I~Dd~RI~a~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~ 164 (360)
||+|...++-|-.. .+..|+..=+++. |++|.++|++ |++.-+-+-+. .+. +..-+..|..
T Consensus 1 ~V~IKpN~~~~~~~~~~~~T~P~vv~av---v~~l~~~g~~~i~i~e~~~~~~--------~~~-~~~~~~~G~~----- 63 (206)
T PF04015_consen 1 RVLIKPNFVNPGPPESGATTHPEVVRAV---VEMLKEAGAKEIIIAESPGSGA--------ADT-REVFKRSGYE----- 63 (206)
T ss_pred CEEEEeCCCCCCCCCCCccCCHHHHHHH---HHHHHHcCCCceEEEeCCCcch--------HhH-HHHHHHcchh-----
Confidence 68888888888753 3667776666654 5666788887 77776555330 111 1111122221
Q ss_pred CCCCHHHHHHHhcCCCCcEEEEecccCcccccc-----CcHHHHHHHhhcCCeeeeccccccc
Q 018160 165 DCIGPEVEKLVASLPEGGVLLLENVRFYKEEEK-----NDPEFAKKLASLADLYVNDAFGTAH 222 (360)
Q Consensus 165 d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~-----nd~~fa~~LA~l~DvyVNDAFgtaH 222 (360)
+.. .-...+++-+++..++..... ..-.+.+.+.. +|++||=+==-.|
T Consensus 64 --------~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~e-aD~iInvp~lK~H 116 (206)
T PF04015_consen 64 --------EIA-EEYGAELVDLDDEPWVEVPLPGGEHLKEFKVPRILLE-ADVIINVPKLKTH 116 (206)
T ss_pred --------hHH-HhcCCcEEEccCCcccceeccCCeeeeeEEhhHHHHh-CCEEEEecCcccC
Confidence 000 001225666777666665533 12358888888 8999985433333
No 87
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=30.77 E-value=1.3e+02 Score=27.99 Aligned_cols=59 Identities=20% Similarity=0.154 Sum_probs=42.4
Q ss_pred CCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccccccchHHHHHHHHHHHhCCCeEEc
Q 018160 258 PKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLL 335 (360)
Q Consensus 258 p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~L 335 (360)
+-||.|...|=.--...+.-....+.++|.+|+ ||.|+. +..|..+...++.+|..+++
T Consensus 129 ~lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllv---------------iGTSl~----V~pa~~l~~~~~~~g~~vi~ 187 (206)
T cd01410 129 ILKDTIVDFGERLPPENWMGAAAAACRADLFLC---------------LGTSLQ----VTPAANLPLKAARAGGRLVI 187 (206)
T ss_pred ccCCcEEECCCCCCHHHHHHHHHHHhcCCEEEE---------------ECcCce----ehhHHHHHHHHHhcCCeEEE
Confidence 458998888764333347777788889999998 566652 33577888888888887754
No 88
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=30.77 E-value=83 Score=30.45 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHhCCCeEEccceEE
Q 018160 316 LDLATTLLAKAKAKGVNLLLPSDVV 340 (360)
Q Consensus 316 i~~Ak~il~~a~~~g~~I~LPvD~v 340 (360)
+..+++|++.++++|+++++|..++
T Consensus 102 l~~~~~L~~~A~~~g~~l~v~sGa~ 126 (271)
T PRK13302 102 LLRNEDLIDLARQNGGQIIVPTGAL 126 (271)
T ss_pred HHhHHHHHHHHHHcCCEEEEcchHH
Confidence 4467999999999999999997665
No 89
>PRK14104 chaperonin GroEL; Provisional
Probab=30.56 E-value=5.9e+02 Score=27.39 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=82.2
Q ss_pred hhhHHHHHHHh--CCceeecCCCCCHHHHHHHh--cCCCC-cEEEEecccCccccccCcHHHHHHHhhcCCeeee-----
Q 018160 146 APLVPRLSELL--GIQVVKADDCIGPEVEKLVA--SLPEG-GVLLLENVRFYKEEEKNDPEFAKKLASLADLYVN----- 215 (360)
Q Consensus 146 ~pva~~Ls~lL--g~~V~fv~d~~G~~v~~~i~--~l~~G-eVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVN----- 215 (360)
+++.+.|+++. |.++.++.+-+++.+...+. .++.| .|+.+...-|-.-...+-..++... .+-++.+
T Consensus 231 ~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~t--G~~~i~~~~~~~ 308 (546)
T PRK14104 231 NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILT--GGQAISEDLGIK 308 (546)
T ss_pred HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHh--CCEEEecCCCCC
Confidence 44445555443 78888887777777777553 55543 4788777766433222222222221 1222222
Q ss_pred ------cccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCC-----------------CCeEEEecCCc--
Q 018160 216 ------DAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPK-----------------RPFAAIVGGSK-- 270 (360)
Q Consensus 216 ------DAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~-----------------rP~vaIlGGaK-- 270 (360)
+-+|.+.+..-|-..+. ++..+--.-.++..++.|.+.+++.. +-.+.++||+-
T Consensus 309 l~~~~~~~LG~a~~v~~~~~~~~-~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~ 387 (546)
T PRK14104 309 LENVTLQMLGRAKKVMIDKENTT-IVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEV 387 (546)
T ss_pred cCcCCHHHCCceeEEEEcCCEEE-EEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHH
Confidence 22555554432221111 12111112345556666666665543 33367788863
Q ss_pred --------cccHHHHHHHHHHhhCeeeechHHHHHHHHH
Q 018160 271 --------VSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (360)
Q Consensus 271 --------VsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (360)
+.|-+.++++.++. .++-|||.++.-+..
T Consensus 388 ~l~e~~r~i~Dal~a~~~ai~~--g~VpGGGa~e~~~s~ 424 (546)
T PRK14104 388 EVKERKDRVDDAMHATRAAVEE--GIVPGGGVALLRASE 424 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--CcCcCchHHHHHHHH
Confidence 67777888877775 699999997766653
No 90
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=29.97 E-value=83 Score=29.24 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=23.2
Q ss_pred cchhHhhhhHHHHHHHHCCCe-EEEEecCCCCC
Q 018160 106 DDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPK 137 (360)
Q Consensus 106 Dd~RI~a~lpTI~~Lle~GAk-VIl~SHlGRPk 137 (360)
....+.+....|+.|.++ +. ||+++|+|...
T Consensus 157 ~~~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~ 188 (239)
T cd07381 157 NPLDLERIAADIAEAKKK-ADIVIVSLHWGVEY 188 (239)
T ss_pred CccCHHHHHHHHHHHhhc-CCEEEEEecCcccC
Confidence 344456777788888877 66 99999999753
No 91
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=29.30 E-value=2e+02 Score=29.03 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=47.5
Q ss_pred CCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCe--EEEEecCCCCCC-----CCCCCChhhhHHHHHH
Q 018160 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK--VILSSHLGRPKG-----VTPKFSLAPLVPRLSE 154 (360)
Q Consensus 82 dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk--VIl~SHlGRPkg-----~~~~~SL~pva~~Ls~ 154 (360)
+++||.|++-.++.-|.++ .|-+-+=.+..|.+.||| .+++|.+|-=.. ..+-.|.+-+|+-|+.
T Consensus 53 ~vrg~dV~ivqs~~~p~nd--------~l~eLll~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~~ 124 (332)
T PRK00553 53 SVRNKDVVIFQSTCSPVND--------SLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTK 124 (332)
T ss_pred CCCCCEEEEEcCCCCCCch--------HHHHHHHHHHHHHHcCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHHh
Confidence 5899999999888777542 577888899999999997 588898764321 1234577777777765
No 92
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=29.26 E-value=5.8e+02 Score=25.35 Aligned_cols=180 Identities=18% Similarity=0.213 Sum_probs=95.8
Q ss_pred HHHHHCCCeEEEEec------CCCCCCCCCCCChhhhHHHHHHH---hCCceee-cCCCCCH--HHHHHHhcCCCCc--E
Q 018160 118 KHLIQNGAKVILSSH------LGRPKGVTPKFSLAPLVPRLSEL---LGIQVVK-ADDCIGP--EVEKLVASLPEGG--V 183 (360)
Q Consensus 118 ~~Lle~GAkVIl~SH------lGRPkg~~~~~SL~pva~~Ls~l---Lg~~V~f-v~d~~G~--~v~~~i~~l~~Ge--V 183 (360)
+.+.+.|.+.|-+|- +|.|.+ ..+++..+....+++ ...||.- .++-+|. .+.+.|+.+..-. -
T Consensus 29 ri~e~aGf~ai~~ss~~va~slG~pD~--g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvag 106 (290)
T TIGR02321 29 KLAEQAGFGGIWGSGFELSASYAVPDA--NILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASA 106 (290)
T ss_pred HHHHHcCCCEEEECHHHHHHHCCCCCc--ccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeE
Confidence 445556888666554 688853 346666666555544 4667655 3556665 4555566665332 2
Q ss_pred EEEecccCccc-----cc-c---CcHHHHHHHhh------cCCeeee---cccccccccCcchhccccccCccc-----h
Q 018160 184 LLLENVRFYKE-----EE-K---NDPEFAKKLAS------LADLYVN---DAFGTAHRAHASTEGVTKYLKPSV-----A 240 (360)
Q Consensus 184 lLLENlRF~~e-----E~-~---nd~~fa~~LA~------l~DvyVN---DAFgtaHRahAS~~gi~~~l~ps~-----a 240 (360)
+-||--.|-+. +. + .-++|++++.. --|++|| |||...|-..-.+.....|....+ -
T Consensus 107 i~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~ 186 (290)
T TIGR02321 107 IVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIH 186 (290)
T ss_pred EEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 66777544332 11 1 22467777763 3478886 999544422333332222221111 1
Q ss_pred h-hhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHc
Q 018160 241 G-FLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQ 302 (360)
Q Consensus 241 G-~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~ 302 (360)
| ..=..|+..+.+.+..| -|.+++-|....- ...-+.. +..+..++.|..+...-+++.
T Consensus 187 ~~~~~~~ei~~~~~~~~~p-~pv~~~~~~~p~~-~~~~l~~-lg~~~~v~~g~~~~~aa~~a~ 246 (290)
T TIGR02321 187 SRQKTPDEILAFVKSWPGK-VPLVLVPTAYPQL-TEADIAA-LSKVGIVIYGNHAIRAAVGAV 246 (290)
T ss_pred CCCCCHHHHHHHHHhcCCC-CCeEEecCCCCCC-CHHHHHH-hcCCcEEEEChHHHHHHHHHH
Confidence 1 12256888888876543 4766544322211 1112222 223667888888877777664
No 93
>PRK08227 autoinducer 2 aldolase; Validated
Probab=29.11 E-value=64 Score=31.71 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=32.9
Q ss_pred HHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccccc
Q 018160 249 DYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEE 313 (360)
Q Consensus 249 ~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~ 313 (360)
+.|.++++....|.+ |.||.|.+| -..|+.+ ...+-+| |.|..+|+...+.
T Consensus 182 ~~f~~vv~a~~vPVv-iaGG~k~~~-~~~L~~v----~~ai~aG--------a~Gv~~GRNIfQ~ 232 (264)
T PRK08227 182 EGFERITAGCPVPIV-IAGGKKLPE-RDALEMC----YQAIDEG--------ASGVDMGRNIFQS 232 (264)
T ss_pred HHHHHHHHcCCCcEE-EeCCCCCCH-HHHHHHH----HHHHHcC--------Cceeeechhhhcc
Confidence 567778887778865 999999966 3333333 2222244 3677888876654
No 94
>PLN02762 pyruvate kinase complex alpha subunit
Probab=29.02 E-value=61 Score=34.84 Aligned_cols=100 Identities=22% Similarity=0.196 Sum_probs=65.5
Q ss_pred hHHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHH------HhcCCCCcEEE
Q 018160 114 VPTIKHLIQNGAKVI--LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL------VASLPEGGVLL 185 (360)
Q Consensus 114 lpTI~~Lle~GAkVI--l~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~------i~~l~~GeVlL 185 (360)
..+|+.|++.|..|. =+||-.. ++....-...+.+++.+|++|...-|.-||+++-- --.|++||.+.
T Consensus 40 ~e~l~~li~aGm~v~RlNfSHg~~----e~h~~~i~~iR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~~~~i~l~~G~~v~ 115 (509)
T PLN02762 40 FEQLEALAMGGMNVARLNMCHGTR----EWHRDVIRRVRRLNEEKGFAVAVMMDTEGSEIHMGDLGGASSAKAEDGEEWT 115 (509)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCH----HHHHHHHHHHHHHHHHcCCceEEEecCCCCceEEEecCCCccEEecCCCEEE
Confidence 358999999998853 4677432 23334445556777888999999989888876521 01367788777
Q ss_pred EecccCcccc---c---cCcHHHHHHHhhcCCeeeeccc
Q 018160 186 LENVRFYKEE---E---KNDPEFAKKLASLADLYVNDAF 218 (360)
Q Consensus 186 LENlRF~~eE---~---~nd~~fa~~LA~l~DvyVNDAF 218 (360)
|-.-.+ .++ + -+-++|.+.+..--.||++|..
T Consensus 116 lt~~~~-~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~ 153 (509)
T PLN02762 116 FTVRKF-DGSRPEFTIQVNYDGFAEDVKVGDELVVDGGM 153 (509)
T ss_pred EeCCcc-CCCCCCcEEeechHHHHHhcCCCCEEEEeCCE
Confidence 743211 121 1 1346788888888888888864
No 95
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=28.85 E-value=3e+02 Score=24.56 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=43.1
Q ss_pred cHHHHHHHhhcCCeeeecccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcC--CCCCeEEEecCCccccHHH
Q 018160 199 DPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSS--PKRPFAAIVGGSKVSSKIG 276 (360)
Q Consensus 199 d~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~--p~rP~vaIlGGaKVsdKI~ 276 (360)
..+..+.++..+|.+. |++.+ +.+.|- . +.+ ...+.++.+.+.+.+ |.-| +++.||-+..
T Consensus 116 ~~e~~~~~~~~~d~i~---~~~~~---~g~tg~-~-~~~-----~~~~~i~~i~~~~~~~~~~~~-i~v~GGI~~e---- 177 (210)
T TIGR01163 116 PLEFLEYVLPDVDLVL---LMSVN---PGFGGQ-K-FIP-----DTLEKIREVRKMIDENGLSIL-IEVDGGVNDD---- 177 (210)
T ss_pred CHHHHHHHHhhCCEEE---EEEEc---CCCCcc-c-ccH-----HHHHHHHHHHHHHHhcCCCce-EEEECCcCHH----
Confidence 3556677777788754 33322 233441 2 111 112344444444442 2234 6788898753
Q ss_pred HHHHHHHh-hCeeeechHHH
Q 018160 277 VIESLLET-CDILLLGGGMI 295 (360)
Q Consensus 277 vi~~Ll~k-vD~lliGG~ma 295 (360)
-++.+++. +|.+++|+++.
T Consensus 178 nv~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 178 NARELAEAGADILVAGSAIF 197 (210)
T ss_pred HHHHHHHcCCCEEEEChHHh
Confidence 36666664 89999987663
No 96
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=28.40 E-value=72 Score=29.93 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=25.2
Q ss_pred CCcCcchh-H-hhhhHHHHHHHHCCCeEEEEecCCCCC
Q 018160 102 QNITDDTR-I-RAAVPTIKHLIQNGAKVILSSHLGRPK 137 (360)
Q Consensus 102 g~I~Dd~R-I-~a~lpTI~~Lle~GAkVIl~SHlGRPk 137 (360)
|+++++.+ | .+....|+.|.++|.+++++| |||.
T Consensus 11 GTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaT--GR~~ 46 (272)
T PRK15126 11 GTLLMPDHHLGEKTLSTLARLRERDITLTFAT--GRHV 46 (272)
T ss_pred CcCcCCCCcCCHHHHHHHHHHHHCCCEEEEEC--CCCH
Confidence 56655432 4 456678999999999999996 8873
No 97
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=28.06 E-value=23 Score=33.50 Aligned_cols=55 Identities=29% Similarity=0.591 Sum_probs=42.5
Q ss_pred EEEecccCccccccCcHHHHHHHhhc--CCeee-eccccc-ccccCcch----hccccccCccchhhhH
Q 018160 184 LLLENVRFYKEEEKNDPEFAKKLASL--ADLYV-NDAFGT-AHRAHAST----EGVTKYLKPSVAGFLL 244 (360)
Q Consensus 184 lLLENlRF~~eE~~nd~~fa~~LA~l--~DvyV-NDAFgt-aHRahAS~----~gi~~~l~ps~aG~Lm 244 (360)
-+.|..||.+ |+|+.+.-++ +||-| .+-||| +.|.||-. +||.-.+-+|+|--..
T Consensus 41 ~~f~~~r~~~------PdF~~n~~~yq~g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy 103 (191)
T COG0066 41 HLFEDWRYLD------PDFVLNVPPYQGGDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFY 103 (191)
T ss_pred cccccccccC------cchhhcCCccCCccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHh
Confidence 3577778776 8899999887 99888 899998 56999876 5777766677765444
No 98
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=28.05 E-value=1.3e+02 Score=28.14 Aligned_cols=52 Identities=25% Similarity=0.227 Sum_probs=30.2
Q ss_pred hHhhhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceee
Q 018160 109 RIRAAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVK 162 (360)
Q Consensus 109 RI~a~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~f 162 (360)
-+.+....|++|.+ ++. ||+++|+|......+.-....+|+.|-+ -|.++.+
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~-~G~DvIi 210 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEPTDEQRELAHALID-AGADVVI 210 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCCCHHHHHHHHHHHH-cCCCEEE
Confidence 35666667777776 476 8899999976322222222345555433 3555544
No 99
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=28.03 E-value=5.6e+02 Score=26.70 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=22.5
Q ss_pred chhHhhhhHHHHHHHHCCCeEEEEecCC
Q 018160 107 DTRIRAAVPTIKHLIQNGAKVILSSHLG 134 (360)
Q Consensus 107 d~RI~a~lpTI~~Lle~GAkVIl~SHlG 134 (360)
.........+|++|+++|.+|+++||..
T Consensus 256 ~~Y~~~la~~i~~Li~~g~~Vv~lp~~~ 283 (426)
T PRK10017 256 QAYEKAFAGVVNRIIDEGYQVIALSTCT 283 (426)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 3344666788999999999999999973
No 100
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=27.94 E-value=1.5e+02 Score=28.34 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=42.7
Q ss_pred CCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccccccchHHHHHHHHHHHhCCCeEEc
Q 018160 257 SPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLL 335 (360)
Q Consensus 257 ~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~L 335 (360)
.+-||-|...|=.--...+.-+.+.++++|.+|+ ||.|+. +.-|.++...++.+|.++++
T Consensus 151 g~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lv---------------iGTSl~----V~pa~~l~~~~~~~g~~~i~ 210 (244)
T PRK14138 151 GLIRPNIVFFGEALPQDALREAIRLSSKASLMIV---------------MGSSLV----VYPAAELPLITVRSGGKLVI 210 (244)
T ss_pred CeECCCEEECCCcCCHHHHHHHHHHHhcCCEEEE---------------eCcCCe----eecHhHHHHHHHHcCCeEEE
Confidence 3568988888776444456667788889999998 566652 23377777778888877643
No 101
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=27.77 E-value=62 Score=31.36 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=19.1
Q ss_pred HhhhhHHHHHHHHCCCe-EEEEecCCC
Q 018160 110 IRAAVPTIKHLIQNGAK-VILSSHLGR 135 (360)
Q Consensus 110 I~a~lpTI~~Lle~GAk-VIl~SHlGR 135 (360)
++++-..++.|.++|+. ||+++|+|-
T Consensus 159 ~~~~~~~v~~lk~~~~D~VI~lsH~G~ 185 (285)
T cd07405 159 IHEAKEVVPELKQEKPDIVIAATHMGH 185 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecccc
Confidence 34444556677777888 999999996
No 102
>PLN02645 phosphoglycolate phosphatase
Probab=27.75 E-value=3.9e+02 Score=26.14 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=53.9
Q ss_pred HHHHHHhhcCCeeeecccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHH
Q 018160 201 EFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIES 280 (360)
Q Consensus 201 ~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~ 280 (360)
++.+ |..-.|.|+-|..||.|+..-- + |. -.+.|.++.+ -..|++.+-+.+. ...-.+++.
T Consensus 20 ~~~~-~~~~~~~~~~D~DGtl~~~~~~-------~-~g--------a~e~l~~lr~-~g~~~~~~TN~~~-~~~~~~~~~ 80 (311)
T PLN02645 20 NADE-LIDSVETFIFDCDGVIWKGDKL-------I-EG--------VPETLDMLRS-MGKKLVFVTNNST-KSRAQYGKK 80 (311)
T ss_pred HHHH-HHHhCCEEEEeCcCCeEeCCcc-------C-cC--------HHHHHHHHHH-CCCEEEEEeCCCC-CCHHHHHHH
Confidence 3444 4445899999999999986421 2 21 2334444333 4678888877662 223333444
Q ss_pred HHH-----hhCeeeechHHHHHHHHHcCCc
Q 018160 281 LLE-----TCDILLLGGGMIFTFYKAQGIS 305 (360)
Q Consensus 281 Ll~-----kvD~lliGG~ma~tFL~A~G~~ 305 (360)
|-+ ..|.|+..|.....+|+..++.
T Consensus 81 l~~lGi~~~~~~I~ts~~~~~~~l~~~~~~ 110 (311)
T PLN02645 81 FESLGLNVTEEEIFSSSFAAAAYLKSINFP 110 (311)
T ss_pred HHHCCCCCChhhEeehHHHHHHHHHhhccC
Confidence 422 4788888888888899877653
No 103
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=27.69 E-value=78 Score=29.42 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=26.7
Q ss_pred CCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEe
Q 018160 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131 (360)
Q Consensus 82 dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~S 131 (360)
+++||+|+|= +.|.+ +.-.++.|++.||+|.+++
T Consensus 6 ~l~gk~vlVv--------GgG~v--------a~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 6 NLEGRAVLVV--------GGGDV--------ALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred EcCCCeEEEE--------CcCHH--------HHHHHHHHHHCCCEEEEEc
Confidence 6899999862 44654 4667899999999988886
No 104
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=27.52 E-value=87 Score=29.26 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=34.4
Q ss_pred ccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeee
Q 018160 223 RAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILL 289 (360)
Q Consensus 223 RahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~ll 289 (360)
+.|=.++|... .+ -+..+.+.+.+ ++|++.|+||-|+.. .+++.||..+
T Consensus 79 vvhLtmyga~~--~~---------~~~~ir~~~~~-~~p~LIvvGg~gvp~------evye~aDynl 127 (176)
T PRK03958 79 VVHLTMYGENI--QD---------VEPEIREAHRK-GEPLLIVVGAEKVPR------EVYELADWNV 127 (176)
T ss_pred EEEEEEecCCc--cc---------hHHHHHHhhcc-CCcEEEEEcCCCCCH------HHHhhCCEEe
Confidence 45666676653 22 22334445556 899999999999885 5688999988
No 105
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=27.39 E-value=1.4e+02 Score=26.12 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCC-ceeecCCC--CCHH--HHHHHhcCC--CCcEE
Q 018160 112 AAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGI-QVVKADDC--IGPE--VEKLVASLP--EGGVL 184 (360)
Q Consensus 112 a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~-~V~fv~d~--~G~~--v~~~i~~l~--~GeVl 184 (360)
.+..+|++|.++|.++.|+| |.. ...+..+.+.+|. +..+..++ .-+. +.+.++.|+ ++.++
T Consensus 131 ~~~~~l~~L~~~Gi~~~i~T--GD~---------~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~ 199 (215)
T PF00702_consen 131 GAKEALQELKEAGIKVAILT--GDN---------ESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVA 199 (215)
T ss_dssp THHHHHHHHHHTTEEEEEEE--SSE---------HHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEE
T ss_pred hhhhhhhhhhccCcceeeee--ccc---------cccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEE
Confidence 36789999999999999998 532 2456667777776 32222222 2122 256666665 45566
Q ss_pred EE
Q 018160 185 LL 186 (360)
Q Consensus 185 LL 186 (360)
+.
T Consensus 200 ~v 201 (215)
T PF00702_consen 200 MV 201 (215)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 106
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=27.24 E-value=1.8e+02 Score=29.37 Aligned_cols=75 Identities=17% Similarity=0.305 Sum_probs=48.8
Q ss_pred HHHHHHHhhhcCCCCCeEEEecCCccccHHHH--HHHHHHhhCeeeec-hHHHHHHHHHcCCccccccccccchHHHHHH
Q 018160 246 KELDYLVGAVSSPKRPFAAIVGGSKVSSKIGV--IESLLETCDILLLG-GGMIFTFYKAQGISVGSSLVEEDKLDLATTL 322 (360)
Q Consensus 246 kEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~v--i~~Ll~kvD~lliG-G~ma~tFL~A~G~~IG~SlvE~d~i~~Ak~i 322 (360)
+++..+.+.+..-. +-+-|+ |||.++-++ |+.+++.+|.|++. |-++. ++| -++....=|+|
T Consensus 202 ~dV~~lr~~l~~~~-~~~~ii--aKIE~~~~v~nl~eI~~~sDgimiaRGDLg~--------e~~----~e~v~~~Qk~i 266 (348)
T PF00224_consen 202 EDVKELRKILGEKG-KDIKII--AKIETKEAVENLDEILEASDGIMIARGDLGV--------EIP----FEKVPIIQKRI 266 (348)
T ss_dssp HHHHHHHHHHTCTT-TTSEEE--EEE-SHHHHHTHHHHHHHSSEEEEEHHHHHH--------HST----GGGHHHHHHHH
T ss_pred HHHHHHHHHhhhcC-ccccee--eccccHHHHhhHHHHhhhcCeEEEecCCcce--------eee----HHHHHHHHHHH
Confidence 46777777776533 222333 788888665 56778899999998 77663 333 13445566788
Q ss_pred HHHHHhCCCeEEc
Q 018160 323 LAKAKAKGVNLLL 335 (360)
Q Consensus 323 l~~a~~~g~~I~L 335 (360)
+.+|++.|..+++
T Consensus 267 i~~~~~~~kpvi~ 279 (348)
T PF00224_consen 267 IKKCNAAGKPVIV 279 (348)
T ss_dssp HHHHHHHT-EEEE
T ss_pred HHHHHHhCCCeee
Confidence 9999998876544
No 107
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=27.21 E-value=70 Score=34.27 Aligned_cols=128 Identities=22% Similarity=0.360 Sum_probs=71.6
Q ss_pred CcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCC-CCCh--hhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCC
Q 018160 105 TDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTP-KFSL--APLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEG 181 (360)
Q Consensus 105 ~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~-~~SL--~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~G 181 (360)
.+++|+-.+=.+.+.|.+.|.+|++=+.-|-.-+..| .|.- ..+++. .+++..+|-+- +.+...+.++.|++|
T Consensus 11 ~~E~RValtP~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~-~~v~~~diilk---V~~P~~~e~~~l~~g 86 (509)
T PRK09424 11 PGETRVAATPKTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDG-AAVWQSDIILK---VNAPSDDEIALLREG 86 (509)
T ss_pred CCCeEeccCHHHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecC-cccccCCEEEE---eCCCCHHHHHhcCCC
Confidence 3566766666689999999999999999886656433 2220 111111 12334444431 122233457889999
Q ss_pred cEEEEecccCccccccCcHHHHHHHhh-cCCeeeecccccccccCcchhccccccCccchhhhHH
Q 018160 182 GVLLLENVRFYKEEEKNDPEFAKKLAS-LADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQ 245 (360)
Q Consensus 182 eVlLLENlRF~~eE~~nd~~fa~~LA~-l~DvyVNDAFgtaHRahAS~~gi~~~l~ps~aG~Lme 245 (360)
.+|+= .+|+ ..++++.+.|+. -.-+|-.|..--.-|++ |+-.+... ...||+.--
T Consensus 87 ~~li~---~l~p---~~~~~l~~~l~~~~it~ia~e~vpr~sraq-~~d~lssm--a~IAGy~Av 142 (509)
T PRK09424 87 ATLVS---FIWP---AQNPELLEKLAARGVTVLAMDAVPRISRAQ-SLDALSSM--ANIAGYRAV 142 (509)
T ss_pred CEEEE---EeCc---ccCHHHHHHHHHcCCEEEEeecccccccCC-Ccccccch--hhhhHHHHH
Confidence 98742 1333 234666666555 46677677765444544 33333331 246665533
No 108
>PLN02765 pyruvate kinase
Probab=27.13 E-value=72 Score=34.45 Aligned_cols=100 Identities=18% Similarity=0.124 Sum_probs=65.6
Q ss_pred hHHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHH-----HhcCCCCcEEEE
Q 018160 114 VPTIKHLIQNGAKVI--LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-----VASLPEGGVLLL 186 (360)
Q Consensus 114 lpTI~~Lle~GAkVI--l~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~-----i~~l~~GeVlLL 186 (360)
..+|+.|++.|..|. =+||-.. +.....-...+.+++.+|++|...-|.-||+++-- --.|+.|+.+.|
T Consensus 43 ~e~l~~li~aGm~v~RlNfSHg~~----e~h~~~i~~vR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~~~i~l~~G~~~~l 118 (526)
T PLN02765 43 VEVIEACLKAGMSVARFDFSWGDA----EYHQETLENLKIAVKNTKKLCAVMLDTVGPELQVINKTEKPISLKAGNTVTL 118 (526)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCH----HHHHHHHHHHHHHHHHhCCCeEEEecCCCCceeeeecCCCcEecCCCCEEEE
Confidence 369999999999864 3688553 22333444556677778999999999999887621 123566777666
Q ss_pred ecccCccccc----cCcHHHHHHHhhcCCeeeecc
Q 018160 187 ENVRFYKEEE----KNDPEFAKKLASLADLYVNDA 217 (360)
Q Consensus 187 ENlRF~~eE~----~nd~~fa~~LA~l~DvyVNDA 217 (360)
-.=.-..+++ -+-++|.+.+...--+|++|.
T Consensus 119 ~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG 153 (526)
T PLN02765 119 TPDQSKEASSEVLPINFPGLAKAVKPGDTIFVGQY 153 (526)
T ss_pred ecccccCCCCCEEeechHHHHhhcCCCCEEEECCc
Confidence 3211001111 134689999988888999884
No 109
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=26.97 E-value=1.3e+02 Score=29.16 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=43.6
Q ss_pred CCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccccccchHHHHHHHHHHHhCCCeEE
Q 018160 257 SPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLL 334 (360)
Q Consensus 257 ~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~ 334 (360)
.+-||-|+..|=.--.+.+.-....+.+||.+|+ ||.|+. +..|..+...++++|..++
T Consensus 177 g~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllv---------------iGTSl~----V~pa~~l~~~a~~~g~~vi 235 (260)
T cd01409 177 GVLKPDVVFFGENVPRDRVVTAAARLAEADALLV---------------LGSSLM----VYSGYRFVLAAAEAGLPIA 235 (260)
T ss_pred CEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEE---------------eCcCce----ecchhhHHHHHHHCCCcEE
Confidence 4568888888876555567778888889999998 567753 3456777778888887764
No 110
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=26.96 E-value=6e+02 Score=25.42 Aligned_cols=157 Identities=23% Similarity=0.308 Sum_probs=87.9
Q ss_pred cchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEE
Q 018160 106 DDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLL 185 (360)
Q Consensus 106 Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlL 185 (360)
++.-=++.++-|..++++|.+|-++|--|-|.=.||-+.|-.-|.. .|.+|.-++-.-.--..-..+.|.....+
T Consensus 59 h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~----~gi~V~~lPG~sA~~tAL~~SGl~~~~F~- 133 (275)
T COG0313 59 HEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAARE----AGIRVVPLPGPSALITALSASGLPSQRFL- 133 (275)
T ss_pred cCCcHHHHHHHHHHHHhcCCeEEEEecCCCCcccCccHHHHHHHHH----cCCcEEecCCccHHHHHHHHcCCCCCCee-
Confidence 3444566778888899999999999999999546777766544433 57888887654322222223455443333
Q ss_pred EecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcchhccccccCc---cchhhhHHH--------HHHHHHhh
Q 018160 186 LENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKP---SVAGFLLQK--------ELDYLVGA 254 (360)
Q Consensus 186 LENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi~~~l~p---s~aG~Lmek--------El~~L~~~ 254 (360)
.+= |.+-..+.-...-++|+.-..-.| -|-+.||-..+..-+...+.+ -+.++=|-| -+..+..-
T Consensus 134 F~G--FLP~k~~~R~~~l~~l~~~~~t~I--fyEsphRl~~tL~d~~~~~g~~r~v~vaRELTK~~Ee~~~g~~~e~~~~ 209 (275)
T COG0313 134 FEG--FLPRKSKERRKRLEALANEPRTLI--FYESPHRLLATLEDIVEVLGSDREVVVARELTKLFEEIYRGTLSELIEW 209 (275)
T ss_pred Eec--cCCCCccHHHHHHHHHHhcCCeEE--EEecchhHHHHHHHHHHHcCCCceEEEEeecccchhheecccHHHHHHH
Confidence 321 334333333333333333222222 367888888888777665531 122221100 11122223
Q ss_pred hc-C-CCCCeEEEecCCcc
Q 018160 255 VS-S-PKRPFAAIVGGSKV 271 (360)
Q Consensus 255 ~~-~-p~rP~vaIlGGaKV 271 (360)
+. + ++.++|.|+.|..-
T Consensus 210 ~~~~~~KGE~vlvv~~~~~ 228 (275)
T COG0313 210 LEEDTLKGEFVLVVEGKNK 228 (275)
T ss_pred hhhcCCcccEEEEEeCCcc
Confidence 33 3 89999999999443
No 111
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=26.77 E-value=1.1e+02 Score=27.36 Aligned_cols=24 Identities=17% Similarity=0.457 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHCCCeEEEEecCC
Q 018160 111 RAAVPTIKHLIQNGAKVILSSHLG 134 (360)
Q Consensus 111 ~a~lpTI~~Lle~GAkVIl~SHlG 134 (360)
....++|++|.++|.+++++|.++
T Consensus 32 pgv~e~L~~L~~~g~~l~IvSN~~ 55 (161)
T TIGR01261 32 KGVIPALLKLKKAGYKFVMVTNQD 55 (161)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCc
Confidence 457789999999999999999984
No 112
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=26.51 E-value=2e+02 Score=27.33 Aligned_cols=59 Identities=17% Similarity=0.369 Sum_probs=37.8
Q ss_pred CCCCCCCCcCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhh---hHHHHHHHhCCceee
Q 018160 96 VPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAP---LVPRLSELLGIQVVK 162 (360)
Q Consensus 96 VPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~p---va~~Ls~lLg~~V~f 162 (360)
.|++++|+| |...+++. |++|+++|.+ ++++.+.|. -..+|.+. +.+...+..+-++..
T Consensus 7 TPf~~dg~i-D~~~~~~~---i~~l~~~Gv~gi~~~GstGE----~~~ls~~Er~~l~~~~~~~~~~~~~v 69 (281)
T cd00408 7 TPFTADGEV-DLDALRRL---VEFLIEAGVDGLVVLGTTGE----APTLTDEERKEVIEAVVEAVAGRVPV 69 (281)
T ss_pred CCcCCCCCc-CHHHHHHH---HHHHHHcCCCEEEECCCCcc----cccCCHHHHHHHHHHHHHHhCCCCeE
Confidence 578777774 77777765 6899999998 777888773 24455543 444444444433433
No 113
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=26.38 E-value=57 Score=29.41 Aligned_cols=68 Identities=19% Similarity=0.325 Sum_probs=46.2
Q ss_pred cCcchhHhhhhHHHHHHHHCCCeEEEEec-CCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHH
Q 018160 104 ITDDTRIRAAVPTIKHLIQNGAKVILSSH-LGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLV 175 (360)
Q Consensus 104 I~Dd~RI~a~lpTI~~Lle~GAkVIl~SH-lGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i 175 (360)
+.|.++++..+-=...|++.|-.+|++-. ...- ....+..-.+.|++.||.||..+.-..|+.+++..
T Consensus 85 VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a----~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 85 VVDATNLERNLYLTLQLLELGIPVVVVLNKMDEA----ERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp EEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHH----HHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHH----HHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 67888888888888888888877555433 2111 12223445799999999999998888777666543
No 114
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.15 E-value=3.1e+02 Score=28.05 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=24.8
Q ss_pred CCCCeEEEecCCccccHH-HHHHHHHHhhCeeeechHHHHHHHHH
Q 018160 258 PKRPFAAIVGGSKVSSKI-GVIESLLETCDILLLGGGMIFTFYKA 301 (360)
Q Consensus 258 p~rP~vaIlGGaKVsdKI-~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (360)
+.++.++|+||..-..-. .+.+.+.+..-.+++-|.....+..+
T Consensus 297 ~~~~ii~IlGG~~k~~~~~~l~~~~~~~~~~v~~~G~~~~~~~~~ 341 (401)
T PRK03815 297 KDKKIHLILGGDDKGVDLTPLFEFMKNLNIELYAIGSNTEKIQAL 341 (401)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHhhCcEEEEECCCHHHHHHH
Confidence 446889999995423333 44444433332376777765555443
No 115
>PRK14031 glutamate dehydrogenase; Provisional
Probab=25.91 E-value=99 Score=32.67 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=38.0
Q ss_pred EEEecCCccccHHHHHHHHHHh-----hCeeeechHHHHHHHH-HcCCccccccccccchHHHHHHHHHH
Q 018160 263 AAIVGGSKVSSKIGVIESLLET-----CDILLLGGGMIFTFYK-AQGISVGSSLVEEDKLDLATTLLAKA 326 (360)
Q Consensus 263 vaIlGGaKVsdKI~vi~~Ll~k-----vD~lliGG~ma~tFL~-A~G~~IG~SlvE~d~i~~Ak~il~~a 326 (360)
.+|++|+.-..--...+-|.++ =|.+.=.||+....+. .|+ .-+-+.-+++..+.-+++|..+
T Consensus 337 ~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn-~~~~~W~~eeV~~~L~~~m~~~ 405 (444)
T PRK14031 337 IAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQN-SIKLSWSSEEVDEKLKSIMKNI 405 (444)
T ss_pred eEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhcc-ccccCCCHHHHHHHHHHHHHHH
Confidence 5899999988888888888775 3666666766654443 232 2223334555545545444443
No 116
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=25.83 E-value=2.3e+02 Score=27.10 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred CCCcCcchh-HhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCC--CHHHHHHHhc
Q 018160 101 NQNITDDTR-IRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCI--GPEVEKLVAS 177 (360)
Q Consensus 101 ~g~I~Dd~R-I~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~--G~~v~~~i~~ 177 (360)
+|.+.+..+ |..+..+|++|.++|-+++++| .+...+.....++|.+ +|.++. .++++ +..+...++.
T Consensus 10 DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~T-------nns~~~~~~~~~~l~~-~G~~~~-~~~i~ts~~~~~~~l~~ 80 (279)
T TIGR01452 10 DGVLWLGERVVPGAPELLDRLARAGKAALFVT-------NNSTKSRAEYALKFAR-LGFNGL-AEQLFSSALCAARLLRQ 80 (279)
T ss_pred CCceEcCCeeCcCHHHHHHHHHHCCCeEEEEe-------CCCCCCHHHHHHHHHH-cCCCCC-hhhEecHHHHHHHHHHh
Q ss_pred --CCCCcEEEE
Q 018160 178 --LPEGGVLLL 186 (360)
Q Consensus 178 --l~~GeVlLL 186 (360)
.+.+.|+++
T Consensus 81 ~~~~~~~v~~i 91 (279)
T TIGR01452 81 PPDAPKAVYVI 91 (279)
T ss_pred hCcCCCEEEEE
No 117
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=25.64 E-value=81 Score=32.41 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhcCC---CCCeEEEecCCccccHHHHHHHHHHhhCee---eechHHHHHHHHHcCCcccccccccc---c
Q 018160 245 QKELDYLVGAVSSP---KRPFAAIVGGSKVSSKIGVIESLLETCDIL---LLGGGMIFTFYKAQGISVGSSLVEED---K 315 (360)
Q Consensus 245 ekEl~~L~~~~~~p---~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~l---liGG~ma~tFL~A~G~~IG~SlvE~d---~ 315 (360)
+.-.+.+..++... +.| |.|.||.|.++ -.++ +.+... +=+| +.|.-+|+..++.. .
T Consensus 264 ~~~~~~~~~~V~ac~ag~vp-VviAGG~k~~~-~e~L----~~v~~a~~~i~aG--------a~Gv~iGRNIfQ~~~~ea 329 (348)
T PRK09250 264 DHPIDLVRYQVANCYMGRRG-LINSGGASKGE-DDLL----DAVRTAVINKRAG--------GMGLIIGRKAFQRPMAEG 329 (348)
T ss_pred cchHHHHHHHHHhhccCCce-EEEeCCCCCCH-HHHH----HHHHHHHHhhhcC--------CcchhhchhhhcCCcHHH
Confidence 33334455556654 455 78999999854 3333 333333 3355 36778888877654 4
Q ss_pred hHHHHHHHHHHHhC
Q 018160 316 LDLATTLLAKAKAK 329 (360)
Q Consensus 316 i~~Ak~il~~a~~~ 329 (360)
++..+.|..-..+.
T Consensus 330 ~~~~~~i~~i~~~~ 343 (348)
T PRK09250 330 VKLLNAIQDVYLDK 343 (348)
T ss_pred HHHHHHHHHHhcCC
Confidence 66667776655444
No 118
>PF13606 Ank_3: Ankyrin repeat
Probab=25.51 E-value=44 Score=21.72 Aligned_cols=15 Identities=33% Similarity=0.631 Sum_probs=12.6
Q ss_pred hhHHHHHHHHCCCeE
Q 018160 113 AVPTIKHLIQNGAKV 127 (360)
Q Consensus 113 ~lpTI~~Lle~GAkV 127 (360)
....+++|+++|+.|
T Consensus 14 ~~e~v~~Ll~~gadv 28 (30)
T PF13606_consen 14 NIEIVKYLLEHGADV 28 (30)
T ss_pred CHHHHHHHHHcCCCC
Confidence 567899999999864
No 119
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=25.05 E-value=46 Score=27.23 Aligned_cols=35 Identities=40% Similarity=0.561 Sum_probs=23.3
Q ss_pred CCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEe
Q 018160 81 ADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131 (360)
Q Consensus 81 ~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~S 131 (360)
++++||+|||= +.|.+ +.--++.|++.||+|.++|
T Consensus 3 l~l~~~~vlVv--------GgG~v--------a~~k~~~Ll~~gA~v~vis 37 (103)
T PF13241_consen 3 LDLKGKRVLVV--------GGGPV--------AARKARLLLEAGAKVTVIS 37 (103)
T ss_dssp E--TT-EEEEE--------EESHH--------HHHHHHHHCCCTBEEEEEE
T ss_pred EEcCCCEEEEE--------CCCHH--------HHHHHHHHHhCCCEEEEEC
Confidence 37899999974 23432 4457889999999987766
No 120
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.03 E-value=2.9e+02 Score=27.99 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=27.0
Q ss_pred CCeEEEecCC-ccccHHHHHHHHHHhhCeeeechHHHHHHHH
Q 018160 260 RPFAAIVGGS-KVSSKIGVIESLLETCDILLLGGGMIFTFYK 300 (360)
Q Consensus 260 rP~vaIlGGa-KVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~ 300 (360)
+|.++|+||- +=.|--.+++.+.+.+|.+++.|.-+..+..
T Consensus 347 ~~~i~v~g~~~~~k~~~~~~~~l~~~~~~vi~~g~~~~~l~~ 388 (450)
T PRK14106 347 TPIVLIAGGYDKGSDFDEFAKAFKEKVKKLILLGETAQEIAE 388 (450)
T ss_pred CCeEEEeCCcCCCCCHHHHHHHHHhhCCEEEEEcCCHHHHHH
Confidence 4688888763 3223336777777778999888875555443
No 121
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=24.97 E-value=79 Score=30.01 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=20.5
Q ss_pred HhhhhHHHHHHHHCCCe-EEEEecCCCC
Q 018160 110 IRAAVPTIKHLIQNGAK-VILSSHLGRP 136 (360)
Q Consensus 110 I~a~lpTI~~Lle~GAk-VIl~SHlGRP 136 (360)
+++.-..++.+.++|+. ||+++|+|.+
T Consensus 157 ~~~~~~~v~~~~~~~~D~iVvl~H~g~~ 184 (257)
T cd07406 157 VETARELVDELREQGADLIIALTHMRLP 184 (257)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeccCch
Confidence 44444556677788988 9999999975
No 122
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.89 E-value=2.8e+02 Score=28.79 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=29.1
Q ss_pred CCCeEEEecC-CccccHHHHHHHHHHh-hCeeeechHHHH
Q 018160 259 KRPFAAIVGG-SKVSSKIGVIESLLET-CDILLLGGGMIF 296 (360)
Q Consensus 259 ~rP~vaIlGG-aKVsdKI~vi~~Ll~k-vD~lliGG~ma~ 296 (360)
.+|.++|+|| .|=.|--.+++.|.++ ++.+++.|--..
T Consensus 346 ~~~i~~i~Gg~~k~kd~~~l~~~l~~~~~~~v~~~g~~~~ 385 (468)
T PRK04690 346 GRRVALLVGGHDRGLDWTDFAAHMAQRAPLEIVTMGANGP 385 (468)
T ss_pred CCcEEEEEcCCCCCCCHHHHHHHHHhccCeEEEEeCCCHH
Confidence 5789999998 4666888888888888 488888665433
No 123
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=24.63 E-value=1.7e+02 Score=27.07 Aligned_cols=74 Identities=30% Similarity=0.381 Sum_probs=39.5
Q ss_pred CCCCeEEEEeccC-CCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCC---CCC--CCCCCChhhhHHHHHHHh
Q 018160 83 LKGKKVFVRADLN-VPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGR---PKG--VTPKFSLAPLVPRLSELL 156 (360)
Q Consensus 83 l~gKrVlvRvD~N-VPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGR---Pkg--~~~~~SL~pva~~Ls~lL 156 (360)
++||||||-.=-. .|||+=--|++..-=+--.---+++..+||.|+++.-... |.+ .-...|.+...+.+.+.+
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~ 80 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELL 80 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHG
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhcccc
Confidence 5899999876443 2565322355555555555567899999999887764332 333 123345555556555554
No 124
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=24.61 E-value=3e+02 Score=27.32 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=47.2
Q ss_pred CCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCe--EEEEecCCCCCC-----CCCCCChhhhHHHHHH
Q 018160 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK--VILSSHLGRPKG-----VTPKFSLAPLVPRLSE 154 (360)
Q Consensus 82 dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk--VIl~SHlGRPkg-----~~~~~SL~pva~~Ls~ 154 (360)
+++||.|++-..+.-|.+ ..+-+-+=++..|.+.||| .+++|.+|-=.. ..+-+|.+-+|+.|+.
T Consensus 35 ~v~g~~V~iv~s~~~p~n--------d~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsRQDr~~~~~e~isak~va~lL~~ 106 (302)
T PLN02369 35 SVRGCDVFLVQPTCPPAN--------ENLMELLIMIDACRRASAKRITAVIPYFGYARADRKTQGRESIAAKLVANLITE 106 (302)
T ss_pred CCCCCeEEEEecCCCCcc--------hHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCchHHHHHHHHHh
Confidence 689999999888765643 2577888899999999998 688888663321 1234677777777765
Q ss_pred H
Q 018160 155 L 155 (360)
Q Consensus 155 l 155 (360)
.
T Consensus 107 ~ 107 (302)
T PLN02369 107 A 107 (302)
T ss_pred c
Confidence 3
No 125
>PRK06354 pyruvate kinase; Provisional
Probab=24.58 E-value=90 Score=34.10 Aligned_cols=203 Identities=19% Similarity=0.261 Sum_probs=112.2
Q ss_pred hHHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHH-----HhcCCCCcEEEE
Q 018160 114 VPTIKHLIQNGAKVI--LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-----VASLPEGGVLLL 186 (360)
Q Consensus 114 lpTI~~Lle~GAkVI--l~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~-----i~~l~~GeVlLL 186 (360)
..+|+.|++.|..+. =+||-. + +....+-...+.+++.+|++|...-|.-||+++-- --.|+.|+.+.|
T Consensus 23 ~e~l~~li~aG~~v~RlN~sHg~-~---e~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~~i~l~~G~~~~l 98 (590)
T PRK06354 23 PEKLRQLIEAGATTARLNFSHGD-H---EEHGARIKNIREASKKLGKTVGILQDLQGPKIRLGRFEDGPIELKTGDEFIL 98 (590)
T ss_pred HHHHHHHHHcCCCEEEEECCCCC-H---HHHHHHHHHHHHHHHHhCCCEEEEeeCCCCceeccccCCCcEEecCCCEEEE
Confidence 469999999998854 456643 1 22233334456677788999998889888876521 113667777666
Q ss_pred ecccCccccc----cCcHHHHHHHhhcCCeeeecccccccc--cC-------c---------chhccccccCcc--chhh
Q 018160 187 ENVRFYKEEE----KNDPEFAKKLASLADLYVNDAFGTAHR--AH-------A---------STEGVTKYLKPS--VAGF 242 (360)
Q Consensus 187 ENlRF~~eE~----~nd~~fa~~LA~l~DvyVNDAFgtaHR--ah-------A---------S~~gi~~~l~ps--~aG~ 242 (360)
-.-.. .+++ -+.++|.+.+...-.+|++|.-=...= .. + |--|+. +|.. -.-.
T Consensus 99 ~~~~~-~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~Kgvn--~p~~~~~~p~ 175 (590)
T PRK06354 99 TSREV-LGTQEKFSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKKGVN--FPGVSLSLPA 175 (590)
T ss_pred Eeccc-CCCCCEEeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcCCCEEEEEEEeCeEECCCCccc--ccCCccCCCC
Confidence 32111 1111 135689999988888999996222210 00 0 000111 1000 0112
Q ss_pred hHHHHHHHHHhhhcCCCCCeEEEe------------------cC------CccccHHHH--HHHHHHhhCeeeechHHHH
Q 018160 243 LLQKELDYLVGAVSSPKRPFAAIV------------------GG------SKVSSKIGV--IESLLETCDILLLGGGMIF 296 (360)
Q Consensus 243 LmekEl~~L~~~~~~p~rP~vaIl------------------GG------aKVsdKI~v--i~~Ll~kvD~lliGG~ma~ 296 (360)
|=||+.+.|.-.+++. =-|+++- +| +||.++-++ |+.+++.+|.|++|=|
T Consensus 176 ltekD~~di~f~~~~~-vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~DgImVaRG--- 251 (590)
T PRK06354 176 ITEKDREDLIFGLEQG-VDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELCDGLMVARG--- 251 (590)
T ss_pred CCHHHHHHHHHHHHcC-CCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEEccc---
Confidence 3344444443322111 1111110 11 466655433 5566778999999643
Q ss_pred HHHHHcCCccccccccccchHHHHHHHHHHHhCCCeEEc
Q 018160 297 TFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLL 335 (360)
Q Consensus 297 tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~L 335 (360)
..|.++| -++.-..-++|+++|++.|+.++.
T Consensus 252 ----DLgve~g----~e~v~~~qk~ii~~~~~~gkpvI~ 282 (590)
T PRK06354 252 ----DLGVEIP----AEEVPLLQKRLIKKANRLGKPVIT 282 (590)
T ss_pred ----hhhcccC----cHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3456666 455566788999999999886654
No 126
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=24.53 E-value=82 Score=24.78 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=27.0
Q ss_pred CCCCeEEEecC--C---ccccHHHHHHHHHHh-hCeeeech
Q 018160 258 PKRPFAAIVGG--S---KVSSKIGVIESLLET-CDILLLGG 292 (360)
Q Consensus 258 p~rP~vaIlGG--a---KVsdKI~vi~~Ll~k-vD~lliGG 292 (360)
|.++.++|+|. . |-.+....+..++.. +|.+++.|
T Consensus 39 ~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~ 79 (91)
T PF02875_consen 39 PKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTG 79 (91)
T ss_dssp TTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEET
T ss_pred cCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcC
Confidence 58999999995 3 555666788888886 88888755
No 127
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.50 E-value=54 Score=35.48 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=52.7
Q ss_pred EecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCC--CHHHHHHHh--cCCCCcEEEEecc-cCccccccCc-----
Q 018160 130 SSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCI--GPEVEKLVA--SLPEGGVLLLENV-RFYKEEEKND----- 199 (360)
Q Consensus 130 ~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~--G~~v~~~i~--~l~~GeVlLLENl-RF~~eE~~nd----- 199 (360)
.||+|--. ...|..-+-++|+.++|.+|.|+-++. .+.+-+..+ .|.. .-+.|+++ |+|.+|-..|
T Consensus 68 ~SHmGHAr---sYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e-~~~~l~~~F~~~e~eF~~DM~~Ln 143 (586)
T KOG2007|consen 68 SSHMGHAR---SYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGE-KPLSLSERFCYYEEEFLQDMAALN 143 (586)
T ss_pred hhhhhhhh---hhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhcc-chhhHHHHHHHHHHHHHHHHHHhC
Confidence 58999753 457999999999999999999987653 222222111 1111 22778888 7676663322
Q ss_pred --------------H---HHHHHHhhcCCeeee
Q 018160 200 --------------P---EFAKKLASLADLYVN 215 (360)
Q Consensus 200 --------------~---~fa~~LA~l~DvyVN 215 (360)
| .|.+++-..+-.|+-
T Consensus 144 vLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~ 176 (586)
T KOG2007|consen 144 VLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAV 176 (586)
T ss_pred CCCCcccchhhhchHHHHHHHHHHHhCCceeee
Confidence 2 488887766555554
No 128
>PRK10444 UMP phosphatase; Provisional
Probab=24.28 E-value=2.3e+02 Score=26.94 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=31.6
Q ss_pred hhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCcee
Q 018160 108 TRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVV 161 (360)
Q Consensus 108 ~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~ 161 (360)
+-+..+..+|+.|.++|-+++++|--++ .+.++++++|.+ +|.++.
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~-------~~~~~~~~~l~~-~G~~~~ 62 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPS-------QTGQDLANRFAT-AGVDVP 62 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCC-------CCHHHHHHHHHH-cCCCCC
Confidence 4466788899999999999999985443 244455566643 455443
No 129
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=24.10 E-value=93 Score=34.54 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=54.2
Q ss_pred CcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCH---HHHHHHhcCC
Q 018160 103 NITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGP---EVEKLVASLP 179 (360)
Q Consensus 103 ~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~---~v~~~i~~l~ 179 (360)
.|.|.+.+++.|.=--.|+|-|.++|+.=-+=. .-.+.-.+--.++|++.||.||....-.-|+ +..+++-.+.
T Consensus 87 nVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D---~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~ 163 (653)
T COG0370 87 NVVDATNLERNLYLTLQLLELGIPMILALNMID---EAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELA 163 (653)
T ss_pred EEcccchHHHHHHHHHHHHHcCCCeEEEeccHh---hHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 488999999999966678899999776543221 1123344556799999999999997766654 4444455555
Q ss_pred CCcEE
Q 018160 180 EGGVL 184 (360)
Q Consensus 180 ~GeVl 184 (360)
+++..
T Consensus 164 ~~~~~ 168 (653)
T COG0370 164 ESKTT 168 (653)
T ss_pred ccccc
Confidence 55554
No 130
>PLN02417 dihydrodipicolinate synthase
Probab=24.02 E-value=3.9e+02 Score=25.82 Aligned_cols=117 Identities=13% Similarity=0.147 Sum_probs=62.5
Q ss_pred CCCCCCCCCcCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHH---hCCceeecCCCCCHH
Q 018160 95 NVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSEL---LGIQVVKADDCIGPE 170 (360)
Q Consensus 95 NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~l---Lg~~V~fv~d~~G~~ 170 (360)
-.|++++|. +|...+++. |++++++|.+ +++..+.| .-..+|.+.-.+.++.. .+..|..+-.+-...
T Consensus 10 ~TPf~~~g~-iD~~~~~~~---i~~l~~~Gv~Gi~~~GstG----E~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~ 81 (280)
T PLN02417 10 KTPYLPDGR-FDLEAYDSL---VNMQIENGAEGLIVGGTTG----EGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNS 81 (280)
T ss_pred eCCcCCCCC-cCHHHHHHH---HHHHHHcCCCEEEECccCc----chhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCcc
Confidence 358876777 487777775 6899999998 78888877 23456666555544433 333333332232223
Q ss_pred HHHHH----hcCCCC-cEEEEecccCccccccCcHHHHHHHhhcCCeeeecccc
Q 018160 171 VEKLV----ASLPEG-GVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFG 219 (360)
Q Consensus 171 v~~~i----~~l~~G-eVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFg 219 (360)
.++++ .+-+-| |.+++-.=.|++--+..=-+|-+.++....+|+-+.-+
T Consensus 82 t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~pi~lYn~P~ 135 (280)
T PLN02417 82 TREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMGPTIIYNVPG 135 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhCCEEEEEChh
Confidence 33333 223445 66666666565421111112333333323666655544
No 131
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=23.96 E-value=1e+02 Score=32.54 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=62.5
Q ss_pred HHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHH-----HhcCCCCcEEEEe
Q 018160 115 PTIKHLIQNGAKVI--LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-----VASLPEGGVLLLE 187 (360)
Q Consensus 115 pTI~~Lle~GAkVI--l~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~-----i~~l~~GeVlLLE 187 (360)
.+|+.|++.|..+. =+||-. .++...+-...+.+++.+|+++...-|.-||+++-- --.++.||.+.|-
T Consensus 17 e~l~~l~~~G~~~~R~N~shg~----~~~~~~~i~~ir~~~~~~~~~~~i~~Dl~GpkiR~g~~~~~~~~l~~g~~v~l~ 92 (473)
T TIGR01064 17 EMLKKLLDAGMNVARLNFSHGS----HEEHGKRIENVREAAEKLGRPVAILLDTKGPEIRTGEIKGGPVKLKKGDKVIIT 92 (473)
T ss_pred HHHHHHHHcCCCEEEEECCCCC----HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeccccCCCceecCCCCEEEEe
Confidence 58888888888753 456643 223344555566777778888888888888776521 1236677776663
Q ss_pred cccCc-cccc----cCcHHHHHHHhhcCCeeeecccc
Q 018160 188 NVRFY-KEEE----KNDPEFAKKLASLADLYVNDAFG 219 (360)
Q Consensus 188 NlRF~-~eE~----~nd~~fa~~LA~l~DvyVNDAFg 219 (360)
.-..+ .+++ -+.++|.+.+...--||++|..=
T Consensus 93 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~iddG~i 129 (473)
T TIGR01064 93 TDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVDDGKI 129 (473)
T ss_pred cccccCCCCCCEEEechHHHHHhcCCCCEEEEeCCeE
Confidence 21110 0111 13467888888888888888643
No 132
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=23.92 E-value=2.1e+02 Score=25.99 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=48.7
Q ss_pred cCCCCCeEEEecCCccccHHHHHHHHHH-hhCeeeechHHHHHHHHHcCCccccccccccchHHHHHHHHHHHhCCCeEE
Q 018160 256 SSPKRPFAAIVGGSKVSSKIGVIESLLE-TCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLL 334 (360)
Q Consensus 256 ~~p~rP~vaIlGGaKVsdKI~vi~~Ll~-kvD~lliGG~ma~tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~ 334 (360)
...+.|+++-++|....+=....+.+.+ -+|.|=|-++--.+... .-..|.++.. ..+...++++..++. +-
T Consensus 51 ~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~--~~~~G~~l~~--~~~~~~eii~~v~~~---~~ 123 (231)
T cd02801 51 NPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVT--KGGAGAALLK--DPELVAEIVRAVREA---VP 123 (231)
T ss_pred CccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHh--CCCeeehhcC--CHHHHHHHHHHHHHh---cC
Confidence 5678999999999998888888888877 68988765443333222 2234444433 235555555555442 11
Q ss_pred ccceEEEe
Q 018160 335 LPSDVVIA 342 (360)
Q Consensus 335 LPvD~vva 342 (360)
+|+.+-+.
T Consensus 124 ~~v~vk~r 131 (231)
T cd02801 124 IPVTVKIR 131 (231)
T ss_pred CCEEEEEe
Confidence 45555443
No 133
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=23.86 E-value=1.8e+02 Score=28.52 Aligned_cols=59 Identities=27% Similarity=0.385 Sum_probs=40.4
Q ss_pred CCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccccccchHHHHHHHHHHHhCCCeEE
Q 018160 257 SPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLL 334 (360)
Q Consensus 257 ~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~ 334 (360)
.+-||-|...|-.--.+-+.-....+++||.+|+ ||+|+. +.-|..+...++++|.+++
T Consensus 172 g~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllv---------------iGTSl~----V~pa~~l~~~a~~~g~~vi 230 (271)
T PTZ00409 172 GIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLV---------------VGTSSS----VSTATNLCYRAHRKKKKIV 230 (271)
T ss_pred CcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEE---------------ECCCCc----ccCHHHHHHHHHHcCCCEE
Confidence 4578888877665333446677788899999998 566653 3345667777777777653
No 134
>PTZ00114 Heat shock protein 60; Provisional
Probab=23.74 E-value=9.3e+02 Score=25.88 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=29.8
Q ss_pred CCeEEEecCCc----------cccHHHHHHHHHHhhCeeeechHHHHHHHHH
Q 018160 260 RPFAAIVGGSK----------VSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (360)
Q Consensus 260 rP~vaIlGGaK----------VsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (360)
+-.+.++||+- +.|-+.++++.++ +.++-|||.+..-+..
T Consensus 387 ~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~--~gvVpGGGa~e~~~s~ 436 (555)
T PTZ00114 387 GVAVIKVGGASEVEVNEKKDRIEDALNATRAAVE--EGIVPGGGVALLRASK 436 (555)
T ss_pred CeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHh--cCcccCCcHHHHHHHH
Confidence 34456678854 6677888888877 7899999998776653
No 135
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.63 E-value=3.7e+02 Score=26.88 Aligned_cols=66 Identities=14% Similarity=0.262 Sum_probs=47.4
Q ss_pred CCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCe--EEEEecCCCCCC-----CCCCCChhhhHHHHHH
Q 018160 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK--VILSSHLGRPKG-----VTPKFSLAPLVPRLSE 154 (360)
Q Consensus 82 dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk--VIl~SHlGRPkg-----~~~~~SL~pva~~Ls~ 154 (360)
+++||.|++--.+.-|.++ .|-+-+=.+..|.+.||+ .+++|.+|-=.. ..+-+|.+-+|+-|+.
T Consensus 49 ~vrg~dV~iv~s~~~~~nd--------~lmelll~~~alr~~~a~~i~~V~PYl~YaRQDr~~~~~e~isak~~a~ll~~ 120 (320)
T PRK02269 49 SIRGHHVFILQSTSSPVND--------NLMEILIMVDALKRASAESINVVMPYYGYARQDRKARSREPITSKLVANMLEV 120 (320)
T ss_pred CCCCCEEEEEecCCCCccc--------hHHHHHHHHHHHHHhCCCeEEEEEeccccchhhcccCCCCCchHHHHHHHHhh
Confidence 5799999998887666532 477788888888899998 688888664321 1245677777777766
Q ss_pred H
Q 018160 155 L 155 (360)
Q Consensus 155 l 155 (360)
.
T Consensus 121 ~ 121 (320)
T PRK02269 121 A 121 (320)
T ss_pred c
Confidence 4
No 136
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=23.47 E-value=3.3e+02 Score=27.35 Aligned_cols=195 Identities=19% Similarity=0.280 Sum_probs=103.6
Q ss_pred ccccCccCCCCCCCeEEEEeccCCCC-----CCCC-CcCcchh--HhhhhHHHHHHHHCCCeEEEEecCCCCC--C---C
Q 018160 73 KSVGELSGADLKGKKVFVRADLNVPL-----DDNQ-NITDDTR--IRAAVPTIKHLIQNGAKVILSSHLGRPK--G---V 139 (360)
Q Consensus 73 ~~i~~l~d~dl~gKrVlvRvD~NVPl-----~~~g-~I~Dd~R--I~a~lpTI~~Lle~GAkVIl~SHlGRPk--g---~ 139 (360)
+.+.++++++ .|.+|++|.==-.|= ...| +|.|.|. ++..--.++.+.++|..|||.-+-+-|. | +
T Consensus 55 ~~v~~~~~v~-~~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi~g~ 133 (298)
T PRK01045 55 IFVEELDEVP-DGAIVIFSAHGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSREGYEIILIGHKGHPEVEGTMGQ 133 (298)
T ss_pred EEecCcccCC-CCCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccC
Confidence 3445544332 388999997554442 1123 6778774 5556668999999999999999999996 3 2
Q ss_pred C-CCCChhhhHHHHHHH---hCCceeecCCCC--CHHHHHHHhcCCCCcEEEEecccC--ccc---cccCcHHHHHHHhh
Q 018160 140 T-PKFSLAPLVPRLSEL---LGIQVVKADDCI--GPEVEKLVASLPEGGVLLLENVRF--YKE---EEKNDPEFAKKLAS 208 (360)
Q Consensus 140 ~-~~~SL~pva~~Ls~l---Lg~~V~fv~d~~--G~~v~~~i~~l~~GeVlLLENlRF--~~e---E~~nd~~fa~~LA~ 208 (360)
. +...+-.-.+.++++ ...++.++.-.. -++.++.++.|+.- ..|+++ +.. -+.+-.+=+++||.
T Consensus 134 ~~~~~~vv~~~~e~~~l~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~----~~~~~v~~~nTIC~aT~~RQ~a~~~La~ 209 (298)
T PRK01045 134 APGGVYLVESPEDVAKLEVKDPDKLALVTQTTLSVDDTAEIIAALKER----FPEIQGPPKDDICYATQNRQEAVKELAP 209 (298)
T ss_pred cCCCEEEEcCHHHHhhcccCCCCcEEEEEcCCCcHHHHHHHHHHHHHh----CcCcccCCCCCcchhhHHHHHHHHHHHh
Confidence 2 122122223344454 345677765432 34455555555431 244554 211 12334567888999
Q ss_pred cCCeeeecccccccccCcchhc-cccccCcc-chhhhHH--HHHHHHHhhhcCCCCCeEEEecCCccccHH--HHHHHH
Q 018160 209 LADLYVNDAFGTAHRAHASTEG-VTKYLKPS-VAGFLLQ--KELDYLVGAVSSPKRPFAAIVGGSKVSSKI--GVIESL 281 (360)
Q Consensus 209 l~DvyVNDAFgtaHRahAS~~g-i~~~l~ps-~aG~Lme--kEl~~L~~~~~~p~rP~vaIlGGaKVsdKI--~vi~~L 281 (360)
-+|+.+- -| -.|+|.+. +.+..... .--+++| .||+ ...+.+. -.|.|.+|+--+|.| .|++.|
T Consensus 210 ~vD~miV--VG---g~~SsNT~kL~~i~~~~~~~t~~Ie~~~el~--~~~l~~~--~~VGitaGASTP~~li~eV~~~l 279 (298)
T PRK01045 210 QADLVIV--VG---SKNSSNSNRLREVAEEAGAPAYLIDDASEID--PEWFKGV--KTVGVTAGASAPEWLVQEVIARL 279 (298)
T ss_pred hCCEEEE--EC---CCCCccHHHHHHHHHHHCCCEEEECChHHCc--HHHhcCC--CEEEEEecCCCCHHHHHHHHHHH
Confidence 9996542 11 23333321 11111000 0122332 2332 1223332 358999999888876 455444
No 137
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.34 E-value=1.3e+02 Score=28.76 Aligned_cols=50 Identities=36% Similarity=0.442 Sum_probs=35.4
Q ss_pred CCCCCCeEEEEeccCCCCCC-C---C----C-----cCcchhHhhhhHHHHHHHHCCCeEEEEe
Q 018160 81 ADLKGKKVFVRADLNVPLDD-N---Q----N-----ITDDTRIRAAVPTIKHLIQNGAKVILSS 131 (360)
Q Consensus 81 ~dl~gKrVlvRvD~NVPl~~-~---g----~-----I~Dd~RI~a~lpTI~~Lle~GAkVIl~S 131 (360)
+.+.| +=|+--|+|-|+|- + + . .+...-+..+-.||++|...+-|||+++
T Consensus 110 Fe~yg-~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCt 172 (217)
T KOG3350|consen 110 FELYG-TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCT 172 (217)
T ss_pred HHhcc-ceeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEec
Confidence 45778 67889999999972 1 1 1 1234456677788888887777888876
No 138
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=23.32 E-value=1.1e+02 Score=28.43 Aligned_cols=33 Identities=30% Similarity=0.612 Sum_probs=24.0
Q ss_pred CCcCcchh-H-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITDDTR-I-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~Dd~R-I-~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|.++++.. | ......|+++.++|.+++|+| |||
T Consensus 12 GTLl~~~~~i~~~~~~al~~~~~~g~~v~iaT--GR~ 46 (264)
T COG0561 12 GTLLDSNKTISPETKEALARLREKGVKVVLAT--GRP 46 (264)
T ss_pred CCccCCCCccCHHHHHHHHHHHHCCCEEEEEC--CCC
Confidence 55555444 3 344567888999999999997 887
No 139
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=23.30 E-value=1.1e+02 Score=28.40 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=26.6
Q ss_pred CCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEe
Q 018160 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131 (360)
Q Consensus 82 dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~S 131 (360)
+++||+|+|= +.|++ +.-.+++|++.|++|++++
T Consensus 7 ~l~~k~vLVI--------GgG~v--------a~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 7 DLSNKRVVIV--------GGGKV--------AGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred EcCCCEEEEE--------CCCHH--------HHHHHHHHHHCCCeEEEEc
Confidence 6899999873 44654 4457889999999999987
No 140
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=23.28 E-value=3e+02 Score=28.39 Aligned_cols=95 Identities=18% Similarity=0.135 Sum_probs=66.0
Q ss_pred CeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHH-CCCeEEEE-ecCCCCCC----CCCCCChhhhHHHHHHHhCCc
Q 018160 86 KKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQ-NGAKVILS-SHLGRPKG----VTPKFSLAPLVPRLSELLGIQ 159 (360)
Q Consensus 86 KrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle-~GAkVIl~-SHlGRPkg----~~~~~SL~pva~~Ls~lLg~~ 159 (360)
..||++||+-- +- .|.-. .-|..-++|++.+.. +|..++=+ +|++-=++ ++...+|-.+++.|++..|.+
T Consensus 119 h~VlLmVd~~D-lr-eG~~~--~~~~~l~~~V~eI~~lkGi~~vGlgTnF~Cfg~v~PTp~n~~~ll~~~~~lE~~~Gi~ 194 (353)
T COG3457 119 HDVLLMVDYGD-LR-EGQWG--FLIEDLEETVEEIQQLKGIHLVGLGTNFPCFGDVLPTPENLESLLQGKKKLEASSGIQ 194 (353)
T ss_pred eeEEEEEEccc-cc-Ccchh--hHHHHHHHHHHHHhcCCCceEEeeecccccccCcCCCcccHHHHHHHHHHHHHhcCce
Confidence 47999999966 43 35543 677788888888775 47886655 88876544 234569999999999999999
Q ss_pred eeecCC--C-------CCHHHHHHHhcCCCCcEEEE
Q 018160 160 VVKADD--C-------IGPEVEKLVASLPEGGVLLL 186 (360)
Q Consensus 160 V~fv~d--~-------~G~~v~~~i~~l~~GeVlLL 186 (360)
++-+.- + .|..-. |+.|++|+.+..
T Consensus 195 l~~vsagnats~~~L~~~~~~~--inhlriG~al~~ 228 (353)
T COG3457 195 LKQVSAGNATSLTLLPMGSLPG--INHLRIGEALTG 228 (353)
T ss_pred eEEecCCCccchhhhhcccccc--cccccccceeec
Confidence 998753 2 122221 667777776643
No 141
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=23.20 E-value=4.5e+02 Score=26.85 Aligned_cols=151 Identities=16% Similarity=0.181 Sum_probs=76.8
Q ss_pred EEEEecCCCCCCCC-CC-CChhhhHHHHHHHhCCceeecCCCC---CHHHHHHHhcCC--CCc-EEEEecccCcccccc-
Q 018160 127 VILSSHLGRPKGVT-PK-FSLAPLVPRLSELLGIQVVKADDCI---GPEVEKLVASLP--EGG-VLLLENVRFYKEEEK- 197 (360)
Q Consensus 127 VIl~SHlGRPkg~~-~~-~SL~pva~~Ls~lLg~~V~fv~d~~---G~~v~~~i~~l~--~Ge-VlLLENlRF~~eE~~- 197 (360)
++|+||-|.|...+ +. .-+-.+...|=+.++.+....++-. .+.+.++++.+. ... .+|++-=-|-+.+.+
T Consensus 83 l~~i~~RG~~g~~depqh~~~G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~~~~~~~~ 162 (361)
T TIGR03297 83 LLIVGWRGEPGVHDEPQHVKQGRITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTFASYKLKG 162 (361)
T ss_pred eEEEecCCCCCCCCCchhhHHhHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEcccccccccccc
Confidence 68999999995332 32 2345677777788899988885422 233444444332 222 344444333221111
Q ss_pred ----------CcHHHHHHHhhc---CCeeeecccccccccCcchh-----cc-ccccCccchhhhHHHHHHHHHhhhcCC
Q 018160 198 ----------NDPEFAKKLASL---ADLYVNDAFGTAHRAHASTE-----GV-TKYLKPSVAGFLLQKELDYLVGAVSSP 258 (360)
Q Consensus 198 ----------nd~~fa~~LA~l---~DvyVNDAFgtaHRahAS~~-----gi-~~~l~ps~aG~LmekEl~~L~~~~~~p 258 (360)
+..+..+.+.+. -|++|.|+ |..-|..-... |- ..|+.....|+-+- .+++-.+..|
T Consensus 163 ~~~~~~~~~~~r~~ai~~i~~~l~~~~iVV~~~-G~~s~el~~~~~~~~~~~~~~f~~~GsMG~a~p---~AlG~ala~p 238 (361)
T TIGR03297 163 EPANPLPTLMTREEAIAAILDHLPDNTVIVSTT-GKTSRELYELRDRIGQGHARDFLTVGSMGHASQ---IALGLALARP 238 (361)
T ss_pred CCCCCCcCCCCHHHHHHHHHHhCCCCCEEEECC-CCCcHHHHHhhcccccCCCCceEeechhhhHHH---HHHHHHHHCC
Confidence 122344444443 36899886 44322211110 00 12221234454443 2455567789
Q ss_pred CCCeEEEecCCccccHHHHHHHH
Q 018160 259 KRPFAAIVGGSKVSSKIGVIESL 281 (360)
Q Consensus 259 ~rP~vaIlGGaKVsdKI~vi~~L 281 (360)
+||.++|.|=.-.-=-++-|...
T Consensus 239 ~r~Vv~i~GDGsflm~~~eL~t~ 261 (361)
T TIGR03297 239 DQRVVCLDGDGAALMHMGGLATI 261 (361)
T ss_pred CCCEEEEEChHHHHHHHHHHHHH
Confidence 99999999854432223334333
No 142
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=23.19 E-value=66 Score=29.20 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccccccchHHHHHHHHHHHhCCCeEEccceEEEecC
Q 018160 273 SKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADK 344 (360)
Q Consensus 273 dKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~ 344 (360)
+...-|...++.+|.+++--+... +...+..+++++.|++.|++.++|.++....+
T Consensus 53 ~~~~~l~~al~g~d~v~~~~~~~~----------------~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~ 108 (233)
T PF05368_consen 53 DDPESLVAALKGVDAVFSVTPPSH----------------PSELEQQKNLIDAAKAAGVKHFVPSSFGADYD 108 (233)
T ss_dssp T-HHHHHHHHTTCSEEEEESSCSC----------------CCHHHHHHHHHHHHHHHT-SEEEESEESSGTT
T ss_pred CCHHHHHHHHcCCceEEeecCcch----------------hhhhhhhhhHHHhhhccccceEEEEEeccccc
Confidence 355777788888888887322111 55688899999999999999999999876664
No 143
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=23.16 E-value=3.5e+02 Score=27.65 Aligned_cols=92 Identities=16% Similarity=0.118 Sum_probs=59.0
Q ss_pred cccCccccccCcHH-HHHHHhhcCCeeeecccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEe
Q 018160 188 NVRFYKEEEKNDPE-FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIV 266 (360)
Q Consensus 188 NlRF~~eE~~nd~~-fa~~LA~l~DvyVNDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIl 266 (360)
|-||++|-.+--|+ +.+.|+. =-++..||.. ...-+|++=.+.|.+++..|+.--++++
T Consensus 4 ~~~f~~gp~~~~~~~~~~~~~~-------~~~~~~HRs~-------------~F~~i~~e~~~~L~~l~~~~~~~~v~~l 63 (374)
T TIGR01365 4 NPCFSSGPCAKRPGWSIEELKN-------APLGRSHRSK-------------LGKEKLAEAIKKTREMLGVPADYLIGIV 63 (374)
T ss_pred CCCcCCCccCCCchhhHHHHhh-------hhcccCcCCH-------------HHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 56888887776666 4444433 2234556642 2233455556778888887766667777
Q ss_pred cCCccccHHHHHHHHHH-hhCeeeechHHHHHHH
Q 018160 267 GGSKVSSKIGVIESLLE-TCDILLLGGGMIFTFY 299 (360)
Q Consensus 267 GGaKVsdKI~vi~~Ll~-kvD~lliGG~ma~tFL 299 (360)
-|+=-.-==.++-||++ .-|++++.|..+.-|.
T Consensus 64 ~GsGT~a~Eaa~~nl~~~~g~~vLv~g~FG~r~~ 97 (374)
T TIGR01365 64 PASDTGAVEMALWSMLGCRGVDVLAWESFGKGWV 97 (374)
T ss_pred CCchHHHHHHHHHHcCCCCCCeEEEECHHHHHHH
Confidence 77654444456778884 4567778888888877
No 144
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=23.01 E-value=1.2e+02 Score=27.06 Aligned_cols=35 Identities=29% Similarity=0.269 Sum_probs=26.8
Q ss_pred CCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEe
Q 018160 81 ADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131 (360)
Q Consensus 81 ~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~S 131 (360)
+|++||+|+|= +.|++ +.--++.|++.|++|.+++
T Consensus 9 l~l~~~~vlVv--------GGG~v--------a~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 9 FNLHNKVVVII--------GGGKI--------AYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EEcCCCEEEEE--------CCCHH--------HHHHHHHHHhCCCEEEEEc
Confidence 37999999873 44654 4456788999999998885
No 145
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=22.91 E-value=3.7e+02 Score=25.13 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEeccc
Q 018160 111 RAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVR 190 (360)
Q Consensus 111 ~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlR 190 (360)
+....+|+...+=||+.|.+ |-|+-......-..+..++.|.++. + .+.|-.+.|||+=
T Consensus 84 ~~l~~~i~~A~~lGa~~vv~-h~g~~~~~~~e~~~~~~~~~l~~l~-------------------~-~~~gv~l~lEn~~ 142 (273)
T smart00518 84 ERLIDEIKRCEELGIKALVF-HPGSYLKQSKEEALNRIIESLNEVI-------------------D-ETKGVVILLETTA 142 (273)
T ss_pred HHHHHHHHHHHHcCCCEEEE-ccccccCCCHHHHHHHHHHHHHHHH-------------------h-ccCCcEEEEeccC
Confidence 34455666666669996554 8775311111223344444444442 1 1567679999984
No 146
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=22.88 E-value=1.8e+02 Score=29.89 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=37.3
Q ss_pred CeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEec
Q 018160 86 KKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSH 132 (360)
Q Consensus 86 KrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SH 132 (360)
||+++.+=-++=-+.+|. .|..+|......|..|.++|-+|||++-
T Consensus 6 kriVIKiGgs~L~~~~~~-l~~~~i~~la~~I~~l~~~G~~vvlVsS 51 (368)
T PRK13402 6 KRIVVKVGSSLLTPHHQG-CSSHYLLGLVQQIVYLKDQGHQVVLVSS 51 (368)
T ss_pred cEEEEEEchhhccCCCCC-cCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 688888777665543343 6889999999999999999999888877
No 147
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=22.58 E-value=1.1e+02 Score=31.37 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=23.7
Q ss_pred eeeechHHHHHHHHHcCCccccccccccchHHHHHHHHHHHhCCCeEEccceEEEecC
Q 018160 287 ILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADK 344 (360)
Q Consensus 287 ~lliGG~ma~tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~ 344 (360)
.++.||..+|.+|+.+ +-+.++++|.++++|---.|+|+
T Consensus 267 lvv~GGVAaN~~LR~~-------------------l~~~~~~~~~~~~~p~~~~ctDN 305 (345)
T PTZ00340 267 VLIVGGVGCNLRLQEM-------------------MQQMAKERGGKLFAMDERYCIDN 305 (345)
T ss_pred EEEcCCHHHHHHHHHH-------------------HHHHHHHcCCEEEeCChHhhhhh
Confidence 4666777788888732 22234556777777765555543
No 148
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=22.55 E-value=1.3e+02 Score=24.13 Aligned_cols=77 Identities=21% Similarity=0.237 Sum_probs=48.2
Q ss_pred EEEEecCCCCCCCCCCCChhhhHHHHHHHh-CCcee--ecCCCCCHHHHHHHhcCCC---CcEEEEecccCccccccCc-
Q 018160 127 VILSSHLGRPKGVTPKFSLAPLVPRLSELL-GIQVV--KADDCIGPEVEKLVASLPE---GGVLLLENVRFYKEEEKND- 199 (360)
Q Consensus 127 VIl~SHlGRPkg~~~~~SL~pva~~Ls~lL-g~~V~--fv~d~~G~~v~~~i~~l~~---GeVlLLENlRF~~eE~~nd- 199 (360)
+||++|=.|=. ...-.+..++++|++.. +.+|. |.+- --+.+++++..+.. ..|+++.-.-|.-....+|
T Consensus 2 ivlv~hGS~~~--~~~~~~~~l~~~l~~~~~~~~v~~afle~-~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~di 78 (101)
T cd03416 2 LLLVGHGSRDP--RAAEALEALAERLRERLPGDEVELAFLEL-AEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKEDI 78 (101)
T ss_pred EEEEEcCCCCH--HHHHHHHHHHHHHHhhCCCCcEEEEEEEc-CCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccccccH
Confidence 68889954421 12347899999999988 45554 3332 13456666666554 5788888887776666655
Q ss_pred HHHHHHH
Q 018160 200 PEFAKKL 206 (360)
Q Consensus 200 ~~fa~~L 206 (360)
+...+.+
T Consensus 79 p~~~~~~ 85 (101)
T cd03416 79 PAALAAA 85 (101)
T ss_pred HHHHHHH
Confidence 4444443
No 149
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=22.43 E-value=98 Score=29.24 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=20.8
Q ss_pred HhhhhHH-HHHHHHCCCe-EEEEecCCCCC
Q 018160 110 IRAAVPT-IKHLIQNGAK-VILSSHLGRPK 137 (360)
Q Consensus 110 I~a~lpT-I~~Lle~GAk-VIl~SHlGRPk 137 (360)
+.+.-.. ++.+.++|+. ||+++|+|...
T Consensus 156 ~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~ 185 (257)
T cd07408 156 IEEAKKVIVAALKAKGADVIVALGHLGVDR 185 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCcCcCC
Confidence 3444444 6777788999 99999999864
No 150
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=22.06 E-value=1.7e+02 Score=32.05 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=31.6
Q ss_pred HhhhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceee
Q 018160 110 IRAAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVK 162 (360)
Q Consensus 110 I~a~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~f 162 (360)
++++-..+..|.++|+. ||+++|.|-....... ..+-.+..|++.=|.++-+
T Consensus 181 veaa~~~v~~Lr~~gaDvII~LsH~G~~~d~~~~-~~en~~~~l~~v~gID~Il 233 (626)
T TIGR01390 181 VDTARKYVPEMKAKGADIIVALAHSGISADPYQP-GAENSAYYLTKVPGIDAVL 233 (626)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCcCCCcccc-ccchHHHHHhcCCCCCEEE
Confidence 34444566677788999 8999999976421111 2344455566554655544
No 151
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=22.04 E-value=1e+02 Score=27.56 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=26.5
Q ss_pred CCCcCcchh-H-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 101 NQNITDDTR-I-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 101 ~g~I~Dd~R-I-~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
+|.++|+.+ | .+....|+.|.++|-+++++| |||
T Consensus 6 DGTLl~~~~~i~~~~~~al~~l~~~Gi~~~~aT--GR~ 41 (225)
T TIGR01482 6 DGTLTDPNRAINESALEAIRKAESVGIPVVLVT--GNS 41 (225)
T ss_pred cCccCCCCcccCHHHHHHHHHHHHCCCEEEEEc--CCc
Confidence 367777643 6 455778999999999999996 787
No 152
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=21.89 E-value=2.3e+02 Score=25.59 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=26.8
Q ss_pred CCCCCeEEEecCCccccHHHHHHHHHHhh---CeeeechHH
Q 018160 257 SPKRPFAAIVGGSKVSSKIGVIESLLETC---DILLLGGGM 294 (360)
Q Consensus 257 ~p~rP~vaIlGGaKVsdKI~vi~~Ll~kv---D~lliGG~m 294 (360)
.-++|.+.|+||.-=|-|=.+++.+++.. +.++|-+-.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~ 51 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADE 51 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHH
Confidence 34799999999999999999999998864 666664443
No 153
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=21.66 E-value=1.1e+02 Score=29.74 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=21.1
Q ss_pred HhhhhHHHHHHHHCCCe-EEEEecCCCCC
Q 018160 110 IRAAVPTIKHLIQNGAK-VILSSHLGRPK 137 (360)
Q Consensus 110 I~a~lpTI~~Lle~GAk-VIl~SHlGRPk 137 (360)
+++.-..++.|.++|+. ||+++|+|.+.
T Consensus 177 ~e~~~~~v~~lr~~~~D~IIvL~H~G~~~ 205 (288)
T cd07412 177 VEAINAVAPELKAGGVDAIVVLAHEGGST 205 (288)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCCCC
Confidence 34555567777778888 77799999874
No 154
>CHL00093 groEL chaperonin GroEL
Probab=21.56 E-value=6.6e+02 Score=26.78 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCeE-EEecCC----------ccccHHHHHHHHHHhhCeeeechHHHHHHHHH
Q 018160 260 RPFA-AIVGGS----------KVSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (360)
Q Consensus 260 rP~v-aIlGGa----------KVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (360)
.+.. .++||+ .+.|-+.+++++++. .++-|||.+..-+..
T Consensus 373 g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~--gvVpGGGa~e~~~s~ 423 (529)
T CHL00093 373 GGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEE--GIVPGGGATLVHLSE 423 (529)
T ss_pred CCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc--CcccCCcHHHHHHHH
Confidence 3455 558883 478888889888884 799999998766653
No 155
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=21.54 E-value=1.1e+02 Score=32.62 Aligned_cols=202 Identities=21% Similarity=0.291 Sum_probs=113.1
Q ss_pred hhHHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEec--
Q 018160 113 AVPTIKHLIQNGAKVI--LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN-- 188 (360)
Q Consensus 113 ~lpTI~~Lle~GAkVI--l~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLEN-- 188 (360)
+-+.|+.|++.|..|+ =+||-. .++--..-...+..++.+|++|...-|.-||+.+ +..+++|.+-+-..
T Consensus 19 s~e~l~~li~aG~nV~RlNfSHG~----~e~h~~~i~~vR~~~~~~~~~vaIl~DlkGPkIR--~g~~~~~~~~l~~G~~ 92 (477)
T COG0469 19 SEEMLEKLIEAGMNVVRLNFSHGD----HEEHKKRIDNVREAAEKLGRPVAILLDLKGPKIR--TGKFKGGAVELEKGEK 92 (477)
T ss_pred CHHHHHHHHHccCcEEEEecCCCC----hHHHHHHHHHHHHHHHHhCCceEEEEcCCCCcce--eEecCCCcEEeecCCE
Confidence 5689999999999975 457733 2333444556677888899999999999999876 34444433322111
Q ss_pred ccCccccc----------cCcHHHHHHHhhcCCeeeecccccc----------c-c-----cCcchhccccccCcc--ch
Q 018160 189 VRFYKEEE----------KNDPEFAKKLASLADLYVNDAFGTA----------H-R-----AHASTEGVTKYLKPS--VA 240 (360)
Q Consensus 189 lRF~~eE~----------~nd~~fa~~LA~l~DvyVNDAFgta----------H-R-----ahAS~~gi~~~l~ps--~a 240 (360)
++|...+. .+.+.|.+.+..---+++.|..=.. + + .-.|--|+. +|.. -.
T Consensus 93 ~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v~~~~v~~~v~n~G~l~~~KgvN--~pg~~l~~ 170 (477)
T COG0469 93 FTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVEVDGDAVITRVLNGGVLSSNKGVN--LPGVDLSL 170 (477)
T ss_pred EEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEeCCeeEEEEEEeeCCEEEEEEEeCCCccCCCcee--cCCCCCCC
Confidence 22222222 1345788888888889999864211 0 0 011222332 1111 22
Q ss_pred hhhHHHHHHHHHhhhcCCCCCeEEE------------------ecCC--ccccHH------HHHHHHHHhhCeeeechHH
Q 018160 241 GFLLQKELDYLVGAVSSPKRPFAAI------------------VGGS--KVSSKI------GVIESLLETCDILLLGGGM 294 (360)
Q Consensus 241 G~LmekEl~~L~~~~~~p~rP~vaI------------------lGGa--KVsdKI------~vi~~Ll~kvD~lliGG~m 294 (360)
+.|=||....|.-.++. .=.|+|+ .||. +|=.|| .=|+.+++-.|.|.+-=|
T Consensus 171 palteKD~~dl~f~~~~-gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~~SDGIMVARG- 248 (477)
T COG0469 171 PALTEKDKEDLKFGLEQ-GVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEASDGIMVARG- 248 (477)
T ss_pred CCCCccCHHHHHHHHhc-CCCEEEEecCCCHHHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHHHhcCceEEEec-
Confidence 34445554444443332 3333332 1442 343443 335666778899888211
Q ss_pred HHHHHHHcCCccccccccccchHHHHHHHHHHHhCCCeEE
Q 018160 295 IFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLL 334 (360)
Q Consensus 295 a~tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~ 334 (360)
-.|++||- ++..-.=|+|+++|++.|.-++
T Consensus 249 ------DLGVEip~----e~Vp~~QK~iI~~~~~~gkpVI 278 (477)
T COG0469 249 ------DLGVEIPL----EEVPIIQKRIIRKARRAGKPVI 278 (477)
T ss_pred ------ccccccCH----HHhhHHHHHHHHHHHHcCCceE
Confidence 13566663 3334445788899998886543
No 156
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.41 E-value=3.4e+02 Score=27.78 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=32.3
Q ss_pred CCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHH
Q 018160 260 RPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (360)
Q Consensus 260 rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (360)
++.+.|+||-...+=+..|..++++++.+++.|.=+..+...
T Consensus 354 ~~i~~I~G~~d~~~~~~~L~~~~~~v~~v~~~g~~~~~l~~~ 395 (460)
T PRK01390 354 DRIYWIAGGKPKEGGIESLAPFFPRIAKAYLIGEAAEAFAAT 395 (460)
T ss_pred CCeEEEecCccCCCCHHHHHHHHHhhCEEEEECCCHHHHHHH
Confidence 478899999777777888888888999988887655555443
No 157
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=21.30 E-value=3.4e+02 Score=26.89 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=47.2
Q ss_pred CCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCe--EEEEecCCCCC-----CCCCCCChhhhHHHHHH
Q 018160 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK--VILSSHLGRPK-----GVTPKFSLAPLVPRLSE 154 (360)
Q Consensus 82 dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk--VIl~SHlGRPk-----g~~~~~SL~pva~~Ls~ 154 (360)
+++||.|++--.++.| + ..|-+-+=.+..|.+.||+ .+++|.+|-=. ..-+-+|.+-+|+-|+.
T Consensus 46 ~v~g~~V~ivqs~~~~-n--------~~l~elll~~~alr~~~a~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~ 116 (301)
T PRK07199 46 PVAGRTVVLVCSLDRP-D--------EKLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSG 116 (301)
T ss_pred CCCCCEEEEECCCCCC-c--------HHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCccHHHHHHHHHh
Confidence 5789999998877655 3 2577888899999999997 46888865332 12346788888888875
No 158
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=21.29 E-value=91 Score=33.31 Aligned_cols=27 Identities=41% Similarity=0.429 Sum_probs=21.8
Q ss_pred HhhhhHHHHHHHHCCCe-EEEEecCCCC
Q 018160 110 IRAAVPTIKHLIQNGAK-VILSSHLGRP 136 (360)
Q Consensus 110 I~a~lpTI~~Lle~GAk-VIl~SHlGRP 136 (360)
++++-.+++.|.++|+. ||+++|+|..
T Consensus 168 ~~~~~~~v~~Lk~~g~D~II~lsH~g~~ 195 (550)
T TIGR01530 168 IAAAQIAANALKQQGINKIILLSHAGFE 195 (550)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecCCcH
Confidence 45566677888888998 9999999975
No 159
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=21.26 E-value=98 Score=32.47 Aligned_cols=30 Identities=37% Similarity=0.413 Sum_probs=25.3
Q ss_pred hhHhhhhHHHHHHHHCCCe-EEEEecCCCCC
Q 018160 108 TRIRAAVPTIKHLIQNGAK-VILSSHLGRPK 137 (360)
Q Consensus 108 ~RI~a~lpTI~~Lle~GAk-VIl~SHlGRPk 137 (360)
.-+.+.-..|..|.++|+. ||++||+|.+.
T Consensus 187 d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~ 217 (517)
T COG0737 187 DPIEAAKKYIPELKGEGVDVIIALSHLGIED 217 (517)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeccCcCc
Confidence 4567777789999998877 99999999985
No 160
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=21.20 E-value=2e+02 Score=28.30 Aligned_cols=81 Identities=27% Similarity=0.413 Sum_probs=58.9
Q ss_pred cchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeec---CCCCCHHHHHHHhcCCCCc
Q 018160 106 DDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKA---DDCIGPEVEKLVASLPEGG 182 (360)
Q Consensus 106 Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv---~d~~G~~v~~~i~~l~~Ge 182 (360)
++.+.++.+..-+.+.+.||-.|++.+. | .++++++.+.+..|+-=+ ++| +|+
T Consensus 156 t~~~a~~~i~ra~a~~eAGA~~i~lE~v--~---------~~~~~~i~~~l~iP~igiGaG~~~-------------dgq 211 (264)
T PRK00311 156 DEEAAEKLLEDAKALEEAGAFALVLECV--P---------AELAKEITEALSIPTIGIGAGPDC-------------DGQ 211 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEcCC--C---------HHHHHHHHHhCCCCEEEeccCCCC-------------Cce
Confidence 4567899999999999999999999877 4 158899999988775433 344 677
Q ss_pred EEEEecccCccccccCcHHHHHHHhhcCCe
Q 018160 183 VLLLENVRFYKEEEKNDPEFAKKLASLADL 212 (360)
Q Consensus 183 VlLLENlRF~~eE~~nd~~fa~~LA~l~Dv 212 (360)
||+..-+-=+. ....|.|+|+++.+.+.
T Consensus 212 vlv~~D~lG~~--~~~~pkf~k~~~~~~~~ 239 (264)
T PRK00311 212 VLVWHDMLGLF--SGFKPKFVKRYADLAGS 239 (264)
T ss_pred eeeHHhhcCCC--CCCCCCchHhHhhhHHH
Confidence 88776665221 12367888887776653
No 161
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=21.20 E-value=2.3e+02 Score=27.94 Aligned_cols=81 Identities=20% Similarity=0.366 Sum_probs=58.5
Q ss_pred cchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeec---CCCCCHHHHHHHhcCCCCc
Q 018160 106 DDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKA---DDCIGPEVEKLVASLPEGG 182 (360)
Q Consensus 106 Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv---~d~~G~~v~~~i~~l~~Ge 182 (360)
++.+.++.+.--+.+.+.||..|++.+.- ..+++++.+.+..|+-=+ ++| +|+
T Consensus 155 t~~~a~~~i~~A~a~e~AGA~~ivlE~vp-----------~~~a~~It~~l~iP~iGIGaG~~~-------------dGQ 210 (263)
T TIGR00222 155 DEEAAKKLLEDALALEEAGAQLLVLECVP-----------VELAAKITEALAIPVIGIGAGNVC-------------DGQ 210 (263)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEcCCc-----------HHHHHHHHHhCCCCEEeeccCCCC-------------Cce
Confidence 45577899999999999999999987653 378999999999886543 344 678
Q ss_pred EEEEecccCccccccCcHHHHHHHhhcCCe
Q 018160 183 VLLLENVRFYKEEEKNDPEFAKKLASLADL 212 (360)
Q Consensus 183 VlLLENlRF~~eE~~nd~~fa~~LA~l~Dv 212 (360)
||+..-+-=+.+ ...|.|+|+++.+.+.
T Consensus 211 vlV~~D~lG~~~--~~~pkf~k~y~~~~~~ 238 (263)
T TIGR00222 211 ILVMHDALGITV--GHIPKFAKNYLAETET 238 (263)
T ss_pred eeeHHhhcCCCC--CCCCCchHHHhhHHHH
Confidence 887766552221 1357788887776553
No 162
>PRK14558 pyrH uridylate kinase; Provisional
Probab=21.08 E-value=2.1e+02 Score=26.75 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=32.7
Q ss_pred CeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEe
Q 018160 86 KKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131 (360)
Q Consensus 86 KrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~S 131 (360)
||++|.+==++=-++++.-.|..+|+.....|+.+.++|-+|||++
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~ 46 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVI 46 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3555555444333333345788899999999999999999988875
No 163
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=20.93 E-value=61 Score=29.33 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=30.8
Q ss_pred hhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHH
Q 018160 253 GAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTF 298 (360)
Q Consensus 253 ~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tF 298 (360)
+...+..+-.++|+||+ -++=+++.+++|..+.=|-|.|+=
T Consensus 91 ~~~~~g~~~i~F~IGGa-----~G~~~~v~~~a~~~lSLS~mTfpH 131 (157)
T PRK00103 91 RWRDDGRSDVAFVIGGA-----DGLSPAVKKRADQSLSLSKLTLPH 131 (157)
T ss_pred HHHhcCCccEEEEEcCc-----cccCHHHHHhcCceEEeccCCCcH
Confidence 34556667899999998 344467788999999888876653
No 164
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=20.87 E-value=3.3e+02 Score=25.95 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=17.1
Q ss_pred chhHhhhhHHHHHHHHC-CCeEEEEecC
Q 018160 107 DTRIRAAVPTIKHLIQN-GAKVILSSHL 133 (360)
Q Consensus 107 d~RI~a~lpTI~~Lle~-GAkVIl~SHl 133 (360)
+..++.....|+++.++ |.+|+++||+
T Consensus 187 ~~~~~~l~~~l~~l~~~~g~~v~~i~~~ 214 (298)
T TIGR03609 187 VSRLLRLLRALDRLQRDTGAFVLFLPFQ 214 (298)
T ss_pred HHHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 44555556666666665 6677777765
No 165
>PF03192 DUF257: Pyrococcus protein of unknown function, DUF257; InterPro: IPR005489 This family of proteins is of unknown function.; PDB: 2EKD_C.
Probab=20.85 E-value=81 Score=29.86 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=26.6
Q ss_pred HHHhcCCCCcEEEEecccCccccccCcHHHHHHH-hhcCCeeeeccccccc
Q 018160 173 KLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKL-ASLADLYVNDAFGTAH 222 (360)
Q Consensus 173 ~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~L-A~l~DvyVNDAFgtaH 222 (360)
+-++.+++||.+|.|+--....|-.= -.+.+.+ .+-..+.|-|-|+|.|
T Consensus 3 e~l~~~k~GE~VLVEy~S~~~~el~~-~~li~~~~~~~~~vlI~DilDtl~ 52 (210)
T PF03192_consen 3 EFLDSIKPGETVLVEYSSSSPPELLF-YELIKWAREKGYPVLIDDILDTLH 52 (210)
T ss_dssp HHHTTS-TT-EEEEEE-TTS-THHHH-HHHHH---T-SS-BEEEEETTHHH
T ss_pred hHhccCCCCCEEEEEeCCCCcHHHHH-HHHHHHhhhcCCCEEEEEcCCCHH
Confidence 45678999999999986643322100 0122222 2346789999999988
No 166
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=20.85 E-value=1e+02 Score=32.63 Aligned_cols=49 Identities=24% Similarity=0.460 Sum_probs=41.3
Q ss_pred HHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHH
Q 018160 247 ELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMI 295 (360)
Q Consensus 247 El~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma 295 (360)
.|+.|-..++.|.+-.+.|-.|.-|..-|.-|.-+|++=|.||=||---
T Consensus 57 sieefV~~Le~PRkI~lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~ 105 (473)
T COG0362 57 SIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSH 105 (473)
T ss_pred cHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcC
Confidence 4556677788899999999999888999999999999999999988543
No 167
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=20.64 E-value=99 Score=24.89 Aligned_cols=54 Identities=33% Similarity=0.421 Sum_probs=35.8
Q ss_pred HHHHHH--hhCeeeechHHHHHH---HHH--cCCcccccccccc---chHHHHHHHHHHHhCCCeEE
Q 018160 278 IESLLE--TCDILLLGGGMIFTF---YKA--QGISVGSSLVEED---KLDLATTLLAKAKAKGVNLL 334 (360)
Q Consensus 278 i~~Ll~--kvD~lliGG~ma~tF---L~A--~G~~IG~SlvE~d---~i~~Ak~il~~a~~~g~~I~ 334 (360)
++.|++ .+|.++|..--..-+ ..+ .|+. -++|.- ..+.+++|++.++++|+.+.
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~---v~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKH---VLVEKPLALTLEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSE---EEEESSSSSSHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCE---EEEEcCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 566666 688888875433222 222 3432 267764 48999999999999988764
No 168
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=20.60 E-value=1.3e+02 Score=31.62 Aligned_cols=66 Identities=26% Similarity=0.480 Sum_probs=33.2
Q ss_pred CCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCC--CCCCChhhhHHHH---HHHhCCceeecCCCCCHH
Q 018160 96 VPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV--TPKFSLAPLVPRL---SELLGIQVVKADDCIGPE 170 (360)
Q Consensus 96 VPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~--~~~~SL~pva~~L---s~lLg~~V~fv~d~~G~~ 170 (360)
||+.++|.+ |-..|++ -+....|+|++ .|-.|+ .+.+|++.+.+.. ++.-..-+.|+|+|.||=
T Consensus 134 v~L~~dg~~-D~~~i~~-------~~~~~tk~v~I---QRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEF 202 (403)
T PF06838_consen 134 VPLTEDGTI-DWEAIKK-------ALKPNTKMVLI---QRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEF 202 (403)
T ss_dssp --B-TTSSB--HHHHHH-------HHHTTEEEEEE---E-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTT
T ss_pred EeecCCCCc-CHHHHHH-------hhccCceEEEE---ecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCccee
Confidence 577656765 5555444 44467787765 566674 3557766665444 444444588999999975
Q ss_pred HH
Q 018160 171 VE 172 (360)
Q Consensus 171 v~ 172 (360)
++
T Consensus 203 vE 204 (403)
T PF06838_consen 203 VE 204 (403)
T ss_dssp TS
T ss_pred cc
Confidence 54
No 169
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=20.46 E-value=76 Score=30.41 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=44.1
Q ss_pred HHHHHHh--CCceeecCCCC---CHHHHHHHhcCCCCcEEEEecccCccc---c-ccCcHHHHHHHhhcCCeeeec
Q 018160 150 PRLSELL--GIQVVKADDCI---GPEVEKLVASLPEGGVLLLENVRFYKE---E-EKNDPEFAKKLASLADLYVND 216 (360)
Q Consensus 150 ~~Ls~lL--g~~V~fv~d~~---G~~v~~~i~~l~~GeVlLLENlRF~~e---E-~~nd~~fa~~LA~l~DvyVND 216 (360)
+.|++.+ ..++.|+|--- -+..+....-|++|.+++.+|+.|... + -++-...++.+..+.|...+|
T Consensus 123 ~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLED 198 (219)
T ss_pred HHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhC
Confidence 4455432 35788886543 345677788899999999999999851 1 233345666666666665554
No 170
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.44 E-value=1.1e+02 Score=30.89 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=26.4
Q ss_pred CCcCc--chhHhhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITD--DTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~D--d~RI~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|.++| ++....+.++|+.|.++|..||++| ||+
T Consensus 10 GTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaT--GRt 44 (302)
T PRK12702 10 GSLLDLEFNSYGAARQALAALERRSIPLVLYS--LRT 44 (302)
T ss_pred CCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEc--CCC
Confidence 66776 3355678999999999999999998 554
No 171
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=20.41 E-value=2.2e+02 Score=26.99 Aligned_cols=98 Identities=22% Similarity=0.314 Sum_probs=64.0
Q ss_pred chhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEE
Q 018160 107 DTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLL 186 (360)
Q Consensus 107 d~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLL 186 (360)
+-+|.-.+.-.+.|.+.|+.||=+---.||. + .+|+.+.+++.+.. +.+--||- .+++.+++.+-|==++=
T Consensus 47 ~V~ITPT~~ev~~l~~aGadIIAlDaT~R~R---p-~~l~~li~~i~~~~---~l~MADis--t~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 47 DVYITPTLKEVDALAEAGADIIALDATDRPR---P-ETLEELIREIKEKY---QLVMADIS--TLEEAINAAELGFDIIG 117 (192)
T ss_dssp S--BS-SHHHHHHHHHCT-SEEEEE-SSSS----S-S-HHHHHHHHHHCT---SEEEEE-S--SHHHHHHHHHTT-SEEE
T ss_pred CeEECCCHHHHHHHHHcCCCEEEEecCCCCC---C-cCHHHHHHHHHHhC---cEEeeecC--CHHHHHHHHHcCCCEEE
Confidence 4578888888889999999999998888873 3 89999999998877 44555773 45666666666622334
Q ss_pred ecccCccccccC---cHHHHHHHhhcCCeee
Q 018160 187 ENVRFYKEEEKN---DPEFAKKLASLADLYV 214 (360)
Q Consensus 187 ENlRF~~eE~~n---d~~fa~~LA~l~DvyV 214 (360)
--|.=|-++..+ |-+|.++|+.. ++.|
T Consensus 118 TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pv 147 (192)
T PF04131_consen 118 TTLSGYTPYTKGDGPDFELVRELVQA-DVPV 147 (192)
T ss_dssp -TTTTSSTTSTTSSHHHHHHHHHHHT-TSEE
T ss_pred cccccCCCCCCCCCCCHHHHHHHHhC-CCcE
Confidence 446667666654 34688999875 6665
No 172
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=20.39 E-value=4.6e+02 Score=26.80 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=21.3
Q ss_pred CCCCeEEEecCC-ccccH--HHHHHHHHHhhCeeeec
Q 018160 258 PKRPFAAIVGGS-KVSSK--IGVIESLLETCDILLLG 291 (360)
Q Consensus 258 p~rP~vaIlGGa-KVsdK--I~vi~~Ll~kvD~lliG 291 (360)
++++.++|+||- --.|| ..-+..++.++|.+++.
T Consensus 343 ~~~~ii~i~g~~~~~r~k~~~~~~~~~l~~~d~v~l~ 379 (448)
T TIGR01082 343 PDKRIVVVFQPHRYSRTRDLFDDFAKVLSDADELILL 379 (448)
T ss_pred CCCeEEEEECCCCCccHHHHHHHHHHHHHhCCEEEEe
Confidence 456788999862 22322 23444555579999986
No 173
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=20.21 E-value=6.2e+02 Score=25.04 Aligned_cols=102 Identities=22% Similarity=0.152 Sum_probs=55.3
Q ss_pred hhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEeccc
Q 018160 111 RAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVR 190 (360)
Q Consensus 111 ~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlR 190 (360)
.+..-.+..++..|-+||+-.. . ..+.....+.+.+..|.++.+++-.--+.+++++.. +-.++++||.-
T Consensus 66 ~Ai~~~l~~l~~~gd~Vl~~~~-~-------y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~--~~~~v~~e~~~ 135 (369)
T cd00614 66 AAISTVLLALLKAGDHVVASDD-L-------YGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKP--ETKLVYVESPT 135 (369)
T ss_pred HHHHHHHHHHcCCCCEEEECCC-C-------cchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCC--CCeEEEEECCC
Confidence 3444456666777777655431 1 122222333344567889998864323445555532 44689999887
Q ss_pred CccccccCcHHHHHHHhhc-CCeeeeccccccc
Q 018160 191 FYKEEEKNDPEFAKKLASL-ADLYVNDAFGTAH 222 (360)
Q Consensus 191 F~~eE~~nd~~fa~~LA~l-~DvyVNDAFgtaH 222 (360)
.-.++..+-+++++...++ +=+.|.++|++.+
T Consensus 136 np~g~~~dl~~i~~la~~~g~~livD~t~~~~~ 168 (369)
T cd00614 136 NPTLKVVDIEAIAELAHEHGALLVVDNTFATPY 168 (369)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCCcchh
Confidence 5555544434444333332 3355677776644
No 174
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=20.18 E-value=2.3e+02 Score=28.24 Aligned_cols=192 Identities=17% Similarity=0.272 Sum_probs=102.2
Q ss_pred cCccCCCCCCCeEEEEeccCCCC-----CCC-CCcCcchh--HhhhhHHHHHHHHCCCeEEEEecCCCCC--C---CC-C
Q 018160 76 GELSGADLKGKKVFVRADLNVPL-----DDN-QNITDDTR--IRAAVPTIKHLIQNGAKVILSSHLGRPK--G---VT-P 141 (360)
Q Consensus 76 ~~l~d~dl~gKrVlvRvD~NVPl-----~~~-g~I~Dd~R--I~a~lpTI~~Lle~GAkVIl~SHlGRPk--g---~~-~ 141 (360)
.+++++. .|.+|++|.==-.|= ... -+|.|.|. +...--.++.+.++|.+|||+.|-+-|+ | +. +
T Consensus 61 ~~~~~v~-~~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~ 139 (281)
T PRK12360 61 SEIDSLK-EGDVVIIRSHGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNKGYSIIIVGDKNHPEVIGINGWCDN 139 (281)
T ss_pred CchhhCC-CCCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEcCCCCceeeEeccCcCC
Confidence 4444332 377999997554442 112 36777774 4555568899999999999999999996 3 21 1
Q ss_pred CCChhhhHHHHHHH-hCCceeecCCCC--CHHHHHHHhcCCCCcEEEEecccCccc---cccCcHHHHHHHhhcCCeeee
Q 018160 142 KFSLAPLVPRLSEL-LGIQVVKADDCI--GPEVEKLVASLPEGGVLLLENVRFYKE---EEKNDPEFAKKLASLADLYVN 215 (360)
Q Consensus 142 ~~SL~pva~~Ls~l-Lg~~V~fv~d~~--G~~v~~~i~~l~~GeVlLLENlRF~~e---E~~nd~~fa~~LA~l~DvyVN 215 (360)
...+=.-.+.++++ +..++.++.... -++..+.++.|+. -.+|++++.. -+.+-.+=+++||.-+|+.+-
T Consensus 140 ~~~vv~~~~d~~~l~~~~kv~~vsQTT~~~~~~~~iv~~l~~----~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miV 215 (281)
T PRK12360 140 SAYIVNSIEEVENIPFLDKACVVAQTTIIPELWEDILNVIKL----KSKELVFFNTICSATKKRQESAKELSKEVDVMIV 215 (281)
T ss_pred CeEEECCHHHHhhCccccCEEEEECCCCcHHHHHHHHHHHHH----hCcccccCCCcchhhhhHHHHHHHHHHhCCEEEE
Confidence 22111122233333 235666664432 4455555665543 1255555421 123445678999999997653
Q ss_pred cccccccccCcchhc-cccccCccc-hhhhHH--HHHHHHHhhhcCCCCCeEEEecCCccccHH--HHHHHH
Q 018160 216 DAFGTAHRAHASTEG-VTKYLKPSV-AGFLLQ--KELDYLVGAVSSPKRPFAAIVGGSKVSSKI--GVIESL 281 (360)
Q Consensus 216 DAFgtaHRahAS~~g-i~~~l~ps~-aG~Lme--kEl~~L~~~~~~p~rP~vaIlGGaKVsdKI--~vi~~L 281 (360)
-| -.|+|.+. +.+.....+ --+++| .||+ ...+.+ .-.|.|.+|+--.|.+ .+++.|
T Consensus 216 --VG---g~~SsNT~rL~eia~~~~~~t~~Ie~~~el~--~~~~~~--~~~VGitaGASTP~~li~eV~~~l 278 (281)
T PRK12360 216 --IG---GKHSSNTQKLVKICEKNCPNTFHIETADELD--LEMLKD--YKIIGITAGASTPDWIIEEVIKKI 278 (281)
T ss_pred --ec---CCCCccHHHHHHHHHHHCCCEEEECChHHCC--HHHhCC--CCEEEEEccCCCCHHHHHHHHHHH
Confidence 12 23334331 111110000 123332 2322 122322 3469999999888876 444443
Done!