Query 018160
Match_columns 360
No_of_seqs 177 out of 1096
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:53:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1php_A 3-phosphoglycerate kina 100.0 2E-110 6E-115 830.6 28.9 285 70-359 1-286 (394)
2 3q3v_A Phosphoglycerate kinase 100.0 9E-110 3E-114 826.7 31.4 284 75-359 7-293 (403)
3 1v6s_A Phosphoglycerate kinase 100.0 7E-110 3E-114 825.3 30.4 280 77-359 3-283 (390)
4 1vpe_A Phosphoglycerate kinase 100.0 9E-110 3E-114 826.5 30.0 281 77-359 4-286 (398)
5 16pk_A PGK, 3-phosphoglycerate 100.0 1E-108 3E-113 821.8 29.7 280 77-359 4-304 (415)
6 1qpg_A PGK, 3-phosphoglycerate 100.0 5E-108 2E-112 817.2 28.9 280 77-359 7-304 (415)
7 4fey_A Phosphoglycerate kinase 100.0 4E-108 2E-112 813.1 25.8 279 74-359 5-285 (395)
8 3oz7_A Phosphoglycerate kinase 100.0 2E-107 5E-112 814.2 27.4 284 70-359 5-308 (417)
9 2wzb_A Phosphoglycerate kinase 100.0 9E-108 3E-112 815.7 23.8 280 77-359 7-306 (416)
10 1zmr_A Phosphoglycerate kinase 100.0 2E-106 6E-111 799.8 25.1 274 70-359 1-277 (387)
11 2cun_A Phosphoglycerate kinase 100.0 9E-105 3E-109 792.9 26.8 273 76-358 2-290 (410)
12 1fw8_A PGK P72, phosphoglycera 100.0 4.5E-79 1.5E-83 609.2 21.7 217 141-359 2-234 (416)
13 1fw8_A PGK P72, phosphoglycera 99.9 6E-22 2.1E-26 198.1 8.3 64 75-139 350-414 (416)
14 3tqq_A Methionyl-tRNA formyltr 80.7 6.2 0.00021 37.8 9.0 82 113-195 14-96 (314)
15 3rfo_A Methionyl-tRNA formyltr 76.6 5.5 0.00019 38.2 7.2 82 113-195 16-98 (317)
16 3q0i_A Methionyl-tRNA formyltr 75.6 8.7 0.0003 36.8 8.3 83 112-195 18-101 (318)
17 1fmt_A Methionyl-tRNA FMet for 75.6 10 0.00035 36.2 8.8 82 113-195 15-97 (314)
18 2bln_A Protein YFBG; transfera 69.3 18 0.0006 34.4 8.7 79 113-195 12-91 (305)
19 2ekc_A AQ_1548, tryptophan syn 69.1 23 0.0008 32.5 9.3 180 109-328 77-258 (262)
20 1xpj_A Hypothetical protein; s 54.2 12 0.00042 30.1 4.0 25 111-137 27-51 (126)
21 3nav_A Tryptophan synthase alp 53.8 72 0.0025 29.8 9.8 163 108-300 79-246 (271)
22 3kwp_A Predicted methyltransfe 49.6 1.2E+02 0.0041 28.4 10.7 71 112-186 76-146 (296)
23 2zos_A MPGP, mannosyl-3-phosph 45.7 13 0.00043 32.9 3.1 33 102-136 11-43 (249)
24 2rbk_A Putative uncharacterize 44.9 18 0.00061 31.8 3.9 33 102-136 11-46 (261)
25 3cvo_A Methyltransferase-like 43.6 18 0.00062 32.5 3.8 62 133-194 95-160 (202)
26 3vnd_A TSA, tryptophan synthas 43.4 1.4E+02 0.0047 27.8 9.9 160 108-299 77-243 (267)
27 1xvi_A MPGP, YEDP, putative ma 40.7 17 0.00058 32.7 3.1 33 102-136 18-52 (275)
28 1z7e_A Protein aRNA; rossmann 40.7 68 0.0023 32.7 8.0 79 113-195 12-91 (660)
29 1apy_A Aspartylglucosaminidase 40.4 1.1E+02 0.0036 26.9 8.1 70 258-332 72-141 (162)
30 1vjr_A 4-nitrophenylphosphatas 39.8 19 0.00067 31.3 3.3 35 102-136 26-62 (271)
31 1jy2_P Fibrinogen gamma-B chai 39.0 11 0.00036 27.2 1.2 36 215-255 12-47 (48)
32 1rkq_A Hypothetical protein YI 38.5 26 0.00088 31.4 4.0 24 111-136 25-48 (282)
33 3dao_A Putative phosphatse; st 37.6 25 0.00086 31.4 3.7 33 102-136 30-65 (283)
34 1k1e_A Deoxy-D-mannose-octulos 36.8 1.8E+02 0.006 24.0 9.2 40 112-162 39-78 (180)
35 3r4c_A Hydrolase, haloacid deh 35.9 27 0.00094 30.4 3.6 34 102-137 21-57 (268)
36 2z08_A Universal stress protei 35.3 77 0.0026 24.6 5.9 45 117-163 92-136 (137)
37 3h35_A Uncharacterized protein 35.2 18 0.00062 32.4 2.3 67 186-267 11-78 (185)
38 1u02_A Trehalose-6-phosphate p 34.5 22 0.00076 31.3 2.8 25 109-136 23-48 (239)
39 3pdw_A Uncharacterized hydrola 34.4 44 0.0015 29.1 4.7 49 102-159 15-65 (266)
40 2obb_A Hypothetical protein; s 31.5 27 0.00093 29.6 2.7 25 110-136 26-50 (142)
41 1hg3_A Triosephosphate isomera 30.7 1.2E+02 0.004 27.7 7.0 64 116-189 80-146 (225)
42 1mjh_A Protein (ATP-binding do 30.5 1E+02 0.0035 24.5 6.1 47 117-165 113-159 (162)
43 3gve_A YFKN protein; alpha-bet 30.2 93 0.0032 29.6 6.6 51 111-162 194-246 (341)
44 1wr8_A Phosphoglycolate phosph 30.1 40 0.0014 29.1 3.7 33 102-136 12-46 (231)
45 4hv4_A UDP-N-acetylmuramate--L 29.6 1.9E+02 0.0067 28.6 9.1 13 108-120 360-372 (494)
46 2x7v_A Probable endonuclease 4 29.6 1.1E+02 0.0038 26.7 6.6 79 110-209 88-167 (287)
47 3ek6_A Uridylate kinase; UMPK 29.6 1E+02 0.0035 27.9 6.5 52 84-135 8-59 (243)
48 3l8h_A Putative haloacid dehal 28.7 65 0.0022 26.1 4.6 26 110-135 29-54 (179)
49 3hgm_A Universal stress protei 27.5 1.1E+02 0.0039 23.6 5.7 45 117-163 103-147 (147)
50 3hbm_A UDP-sugar hydrolase; PS 27.4 1.3E+02 0.0044 27.9 6.8 42 116-166 61-102 (282)
51 1wek_A Hypothetical protein TT 26.2 1E+02 0.0035 27.8 5.8 66 243-308 20-98 (217)
52 3jyf_A 2',3'-cyclic nucleotide 25.9 48 0.0016 31.7 3.7 26 112-137 189-215 (339)
53 3mpo_A Predicted hydrolase of 25.5 49 0.0017 28.9 3.4 33 102-136 14-48 (279)
54 3dnp_A Stress response protein 25.4 55 0.0019 28.8 3.8 24 111-136 26-49 (290)
55 3s3t_A Nucleotide-binding prot 25.2 1.1E+02 0.0039 23.6 5.3 43 119-163 103-145 (146)
56 3nwy_A Uridylate kinase; allos 25.2 1.2E+02 0.004 28.4 6.2 47 84-131 49-95 (281)
57 2pq0_A Hypothetical conserved 25.1 54 0.0019 28.4 3.6 33 102-136 12-46 (258)
58 2x4d_A HLHPP, phospholysine ph 25.1 42 0.0014 28.5 2.9 49 102-159 21-75 (271)
59 2bw0_A 10-FTHFDH, 10-formyltet 24.7 2.7E+02 0.0092 26.4 8.7 61 113-180 34-100 (329)
60 1yv9_A Hydrolase, haloacid deh 24.6 92 0.0032 26.9 5.0 52 102-160 14-66 (264)
61 2dum_A Hypothetical protein PH 24.4 1.3E+02 0.0046 24.1 5.7 48 117-166 110-157 (170)
62 1nrw_A Hypothetical protein, h 24.2 66 0.0023 28.6 4.1 33 102-136 13-47 (288)
63 4h1s_A 5'-nucleotidase; hydrol 24.2 51 0.0018 32.9 3.7 28 109-136 171-199 (530)
64 1to3_A Putative aldolase YIHT; 24.2 72 0.0025 30.1 4.5 38 258-295 220-258 (304)
65 3pgv_A Haloacid dehalogenase-l 24.1 85 0.0029 27.8 4.8 23 112-136 42-64 (285)
66 1zjj_A Hypothetical protein PH 24.0 68 0.0023 28.1 4.1 44 110-161 19-62 (263)
67 3s4y_A Thiamin pyrophosphokina 23.7 1.3E+02 0.0045 27.5 6.1 40 259-301 20-59 (247)
68 3epr_A Hydrolase, haloacid deh 23.3 41 0.0014 29.5 2.5 30 102-131 14-44 (264)
69 1nmo_A Hypothetical protein YB 22.8 44 0.0015 30.6 2.6 46 115-165 198-243 (247)
70 3zx4_A MPGP, mannosyl-3-phosph 22.7 50 0.0017 28.9 3.0 33 102-136 9-42 (259)
71 4a7w_A Uridylate kinase; trans 22.5 1.6E+02 0.0055 26.4 6.4 50 83-132 5-54 (240)
72 2b30_A Pvivax hypothetical pro 22.3 52 0.0018 30.0 3.0 45 102-153 36-85 (301)
73 4dw8_A Haloacid dehalogenase-l 21.6 82 0.0028 27.5 4.1 24 111-136 25-48 (279)
74 3vtf_A UDP-glucose 6-dehydroge 21.1 1E+02 0.0036 30.8 5.2 65 82-166 330-394 (444)
75 2fue_A PMM 1, PMMH-22, phospho 20.9 79 0.0027 27.9 3.9 32 102-136 22-55 (262)
76 3kc2_A Uncharacterized protein 20.8 1E+02 0.0034 29.5 4.9 47 108-161 29-75 (352)
77 1o6d_A Hypothetical UPF0247 pr 20.8 57 0.002 28.6 2.9 48 170-221 54-108 (163)
78 3qgm_A P-nitrophenyl phosphata 20.5 74 0.0025 27.5 3.6 51 102-160 17-68 (268)
79 2pr7_A Haloacid dehalogenase/e 20.4 1.4E+02 0.0048 22.4 4.8 33 102-134 11-44 (137)
80 1ybd_A Uridylate kinase; alpha 20.4 1.7E+02 0.0059 25.7 6.0 46 86-131 8-53 (239)
81 1ig0_A Thiamin pyrophosphokina 20.3 2.4E+02 0.0081 26.8 7.3 77 259-337 36-120 (319)
82 3mvn_A UDP-N-acetylmuramate:L- 20.1 1.5E+02 0.0052 24.7 5.4 36 258-293 62-101 (163)
No 1
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Probab=100.00 E-value=1.8e-110 Score=830.60 Aligned_cols=285 Identities=60% Similarity=0.959 Sum_probs=275.0
Q ss_pred cccccccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhh
Q 018160 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPL 148 (360)
Q Consensus 70 ~~~~~i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg-~~~~~SL~pv 148 (360)
|++++|.+ +|++|||||||||||||++ +|+|+||+||++++|||+||+++||||||+||||||+| +++++||+||
T Consensus 1 m~k~ti~d---~dl~gKrVlvRvD~NVPl~-~g~Itdd~RI~aalpTI~~ll~~gakvil~SHlGRPkg~~~~~~SL~pv 76 (394)
T 1php_A 1 MNKKTIRD---VDVRGKRVFCRVDFNVPME-QGAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAV 76 (394)
T ss_dssp CCBCBGGG---SCCTTCEEEEECCCCCCEE-TTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHH
T ss_pred CCCCcccc---cCcCCCEEEEEecCCCccc-CCccCChHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCCccCHHHH
Confidence 44455554 5899999999999999997 48999999999999999999999999999999999998 6899999999
Q ss_pred HHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcch
Q 018160 149 VPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHAST 228 (360)
Q Consensus 149 a~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~ 228 (360)
|++|+++||++|.|++||+|++++++|++|++|||+||||+|||+||++||++|+++||+|||+|||||||||||+||||
T Consensus 77 a~~L~~lLg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~ 156 (394)
T 1php_A 77 AKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHAST 156 (394)
T ss_dssp HHHHHHHHTSCCEECSCSSSHHHHHHHHTCCTTCEEECCCGGGSHHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTT
T ss_pred HHHHHHHHCCCceECCCcCCHHHHHHHhcCCCCeEEEEcccCCCcchhhCCHHHHHHHHhhCCEEEeccccccccccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCcccc
Q 018160 229 EGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGS 308 (360)
Q Consensus 229 ~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~ 308 (360)
+||++|+ |+|||+||||||++|++++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+|+|++||+
T Consensus 157 ~gi~~~l-p~~aG~Lm~kEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~ 235 (394)
T 1php_A 157 EGIAHYL-PAVAGFLMEKELEVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGK 235 (394)
T ss_dssp TGGGGTS-CEEECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTT
T ss_pred hhhhhhh-hhhhcHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeCcHHHHHHHHHcCCCCCc
Confidence 9999999 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018160 309 SLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY 359 (360)
Q Consensus 309 SlvE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~ 359 (360)
||+|+|.++.|++||++|+++|++|+||+|++|+++|+++++++++++++|
T Consensus 236 SL~E~d~~~~a~~ll~~a~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~i 286 (394)
T 1php_A 236 SLLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAI 286 (394)
T ss_dssp SCCCGGGHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTSCEEEEEGGGC
T ss_pred cccchhhHHHHHHHHHHHHhcCCEEECCcchhhhhccCCCCceEEeehhcC
Confidence 999999999999999999999999999999999999999999988877654
No 2
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0
Probab=100.00 E-value=9.4e-110 Score=826.73 Aligned_cols=284 Identities=49% Similarity=0.784 Sum_probs=273.6
Q ss_pred ccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHH
Q 018160 75 VGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSE 154 (360)
Q Consensus 75 i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~ 154 (360)
+.+|+|+|++|||||||||||||++++|+|+||+||++++|||+||+++|||||||||||||+|.++++||+|||++|++
T Consensus 7 ~~ti~d~dl~gKrVlvRvD~NVP~~~~g~Itdd~RI~aalpTI~~ll~~GakVil~SHlGRP~g~~~~~SL~pva~~L~~ 86 (403)
T 3q3v_A 7 IISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLAR 86 (403)
T ss_dssp BCBGGGSCCTTCEEEEECCCCCCBCTTCCBSCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHH
T ss_pred CCchhhhccCCCEEEEEeccCCCcCCCCcccChHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCCCcccCHHHHHHHHHH
Confidence 34445559999999999999999985489999999999999999999999999999999999987789999999999999
Q ss_pred HhCCceeecCCCCC-HHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcchhcccc
Q 018160 155 LLGIQVVKADDCIG-PEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233 (360)
Q Consensus 155 lLg~~V~fv~d~~G-~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi~~ 233 (360)
+||++|.|++||+| +++++ |++|++|||+||||+|||+||++||++|+++||+|||+|||||||||||+||||+||++
T Consensus 87 lLg~~V~f~~d~~G~~~~~~-v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~Gi~~ 165 (403)
T 3q3v_A 87 LLDKEIVMAKDVIGEDAKTK-AMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITK 165 (403)
T ss_dssp HHTSCCEECSSSSSHHHHHH-HHHCCTTCEEECSCGGGSTTGGGTCHHHHHHHHHTCSEEEECCGGGTTSCCTTTTGGGG
T ss_pred HHCCCeEecCCCCCcHHHHH-HhcCCCCcEEEEeecccccchhhcHHHHHHHHHhhCCEEEECcchhhhhcCcchhhHHH
Confidence 99999999999999 99999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcc--chhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccc
Q 018160 234 YLKPS--VAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLV 311 (360)
Q Consensus 234 ~l~ps--~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~Slv 311 (360)
|+|.+ |||+||||||++|++++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+|+|++||+|++
T Consensus 166 ~lp~~~~~aG~Lm~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~ 245 (403)
T 3q3v_A 166 FFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLL 245 (403)
T ss_dssp GSCTTSEEECHHHHHHHHHHHHHTTCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECSTTHHHHHHHTTCCCTTSCC
T ss_pred hCCcchhhccHHHHHHHHHHHHHHcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCcccc
Confidence 99547 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018160 312 EEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY 359 (360)
Q Consensus 312 E~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~ 359 (360)
|+|.++.|++||++|+++|++|+||+|++|+++|+++++++++++++|
T Consensus 246 e~d~~~~a~~ll~~a~~~g~~i~LPvD~vva~~f~~~a~~~~~~~~~i 293 (403)
T 3q3v_A 246 EEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEI 293 (403)
T ss_dssp CGGGHHHHHHHHHHHHHTTCEEECCSEEEEESSSSTTSCCEEEEGGGC
T ss_pred chhhHHHHHHHHHHHHHcCCEEECCceEEEeeccCCCCceEEEecccC
Confidence 999999999999999999999999999999999999999998877665
No 3
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Probab=100.00 E-value=7.4e-110 Score=825.29 Aligned_cols=280 Identities=50% Similarity=0.770 Sum_probs=273.0
Q ss_pred CccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHh
Q 018160 77 ELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELL 156 (360)
Q Consensus 77 ~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lL 156 (360)
+|+|+|++|||||||||||||++ +|+|+||+||++++|||+||+++||||||+||||||+|+++++||+|||++|+++|
T Consensus 3 ti~d~dl~gKrVlvRvD~NVPl~-~g~Itdd~RI~aalpTI~~ll~~gakvil~SHlGRPkg~~~~~SL~pva~~L~~lL 81 (390)
T 1v6s_A 3 TLLDLDPKGKRVLVRVDYNVPVQ-DGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRAHL 81 (390)
T ss_dssp BGGGSCCTTCEEEEECCCCCCEE-TTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHHHC
T ss_pred ChhhcCcCCCEEEEEecCCCccc-CCccCChHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCcCHHHHHHHHHHHh
Confidence 45556999999999999999997 48999999999999999999999999999999999999779999999999999999
Q ss_pred CCceeecCCCCC-HHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcchhcccccc
Q 018160 157 GIQVVKADDCIG-PEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYL 235 (360)
Q Consensus 157 g~~V~fv~d~~G-~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi~~~l 235 (360)
| +|+|++||+| ++++++|++|++|||+||||+|||+||++||++|+++||+|||+|||||||||||+||||+||++|+
T Consensus 82 g-~V~f~~d~~G~~~~~~~v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~gi~~~l 160 (390)
T 1v6s_A 82 P-EARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLL 160 (390)
T ss_dssp T-TEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGGTS
T ss_pred C-CceeccccCCcHHHHHHHhcCCCCeEEEEcccccccccccCCHHHHHHHHhhCCEEEEcCcccccccccchhhHhhhh
Confidence 9 9999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccccccc
Q 018160 236 KPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDK 315 (360)
Q Consensus 236 ~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~d~ 315 (360)
|+|||+||||||++|++++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+|+|++||+||+|+|.
T Consensus 161 -p~~aG~Lm~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~ 239 (390)
T 1v6s_A 161 -PAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDR 239 (390)
T ss_dssp -CEEECHHHHHHHHHHHTTTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGG
T ss_pred -HHhhhHHHHHHHHHHHHHhcCCCCCeEEEEcCCchhhHHHHHHHHHHHhccceeCcHHHHHHHHHcCCCCCccccchhh
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018160 316 LDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY 359 (360)
Q Consensus 316 i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~ 359 (360)
++.|++||++|+++|++|+||+|++|+++|+++++++++++++|
T Consensus 240 ~~~a~~ll~~a~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~i 283 (390)
T 1v6s_A 240 LDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAI 283 (390)
T ss_dssp HHHHHHHHHHHHHHTCEEECCSEEEEESSCCTTCCCEEEETTBC
T ss_pred HHHHHHHHHHHHHcCCEEECCcChhhhhccCCCCceEEeehhcC
Confidence 99999999999999999999999999999999999988887765
No 4
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1
Probab=100.00 E-value=8.8e-110 Score=826.46 Aligned_cols=281 Identities=57% Similarity=0.877 Sum_probs=273.2
Q ss_pred CccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhhHHHHHHH
Q 018160 77 ELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSEL 155 (360)
Q Consensus 77 ~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg-~~~~~SL~pva~~Ls~l 155 (360)
+|+|+|++|||||||||||||++ +|+|+||+||++++|||+||+++|||||||||||||+| +++++||+|||++|+++
T Consensus 4 ti~d~dl~gKrVlvRvD~NVPl~-~g~Itdd~RI~a~lpTI~~ll~~gakvil~SHlGRPkg~~~~~~SL~pva~~L~~l 82 (398)
T 1vpe_A 4 TIRDVDLKGKRVIMRVDFNVPVK-DGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLSEL 82 (398)
T ss_dssp BGGGSCCTTCEEEEECCCCCCEE-TTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHHHH
T ss_pred cccccCcCCCEEEEEecCCCccc-CCccCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCCCCcCCccCHHHHHHHHHHH
Confidence 44555999999999999999997 48999999999999999999999999999999999998 68999999999999999
Q ss_pred hCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcchhcccccc
Q 018160 156 LGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYL 235 (360)
Q Consensus 156 Lg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi~~~l 235 (360)
||++|.|++||+|++++++|++|++|||+||||+|||+||++||++|+++||+|||+|||||||||||+||||+||++|+
T Consensus 83 Lg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~gi~~~l 162 (398)
T 1vpe_A 83 LGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFI 162 (398)
T ss_dssp HTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSTHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGGGTS
T ss_pred HCCCceeCCCCCCHHHHHHHhcCCCCeEEEEcccCCCcchhcCCHHHHHHHHhhCCEEEeccccccccccCchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccccccc
Q 018160 236 KPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDK 315 (360)
Q Consensus 236 ~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~d~ 315 (360)
|+|||+||||||++|++++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+|+|++||+||+|+|.
T Consensus 163 -ps~aG~LmekEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d~ 241 (398)
T 1vpe_A 163 -PSVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDK 241 (398)
T ss_dssp -CEEECHHHHHHHHHHHHHHHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGG
T ss_pred -hhhccHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHHHHHHHHcCCCCCchhcChhh
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEee-CCCC
Q 018160 316 LDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCF-LNSY 359 (360)
Q Consensus 316 i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~-~~~~ 359 (360)
++.|++||++|+++|++|+||+|++|+++|++++++++++ +++|
T Consensus 242 ~~~a~~ll~ka~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~~i 286 (398)
T 1vpe_A 242 IDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGI 286 (398)
T ss_dssp HHHHHHHHHHHHHTTCEEECCSEEEEESSCSTTCCCEEEETTTCC
T ss_pred HHHHHHHHHHHHhcCCEEECCceeehhhcccCCCCeEEecccccC
Confidence 9999999999999999999999999999999999998888 6655
No 5
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Probab=100.00 E-value=1e-108 Score=821.79 Aligned_cols=280 Identities=46% Similarity=0.756 Sum_probs=271.2
Q ss_pred CccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCC-----------------
Q 018160 77 ELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV----------------- 139 (360)
Q Consensus 77 ~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~----------------- 139 (360)
+|+|+|++|||||||||||||++ +|+|+||+||++++|||+||+++|||||||||||||+|.
T Consensus 4 ti~d~dl~gKrVlvRvD~NVPl~-~g~Itdd~RI~aalpTI~~ll~~Gakvil~SHlGRPkg~~~~~~~~~~~~~~~~~~ 82 (415)
T 16pk_A 4 SINECDLKGKKVLIRVDFNVPVK-NGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVPGF 82 (415)
T ss_dssp BGGGSCCTTCEEEEEECCCCCEE-TTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCCBCGGGHHHHHHTTCCTTC
T ss_pred cccccCcCCCEEEEEeccCCccc-CCccCchHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCcccccccccccccccccC
Confidence 44555999999999999999997 489999999999999999999999999999999999984
Q ss_pred CCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCc----HHHHHHHhhcCCeeee
Q 018160 140 TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKND----PEFAKKLASLADLYVN 215 (360)
Q Consensus 140 ~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd----~~fa~~LA~l~DvyVN 215 (360)
++++||+|||++|+++||++|+|++||+|++++ |++|++|||+||||+|||+||++|| ++|+++||+|||+|||
T Consensus 83 ~~~~SL~pva~~Ls~lLg~~V~f~~d~~G~~~~--v~~l~~G~VlLLEN~RF~~~E~~nd~~e~~~fa~~LA~l~DvyVN 160 (415)
T 16pk_A 83 QQKATLKPVAKRLSELLLRPVTFAPDCLNAADV--VSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYIS 160 (415)
T ss_dssp CGGGCSHHHHHHHHHHHTSCCEEESCTTSCHHH--HHTCCTTCEEEECCGGGBGGGGCSSHHHHHHHHHHHHTTCSEEEE
T ss_pred CcccCHHHHHHHHHHHhCCCCeeCCccCChHHH--hhcCCCCcEEEeccccCCcccccCCccccHHHHHHHHhhCCEEEE
Confidence 789999999999999999999999999999998 9999999999999999999999999 9999999999999999
Q ss_pred cccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHH
Q 018160 216 DAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMI 295 (360)
Q Consensus 216 DAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma 295 (360)
||||||||+||||+||++|++++|||+||||||++|++++++|+|||+||+||+||||||++|+||++|||+|||||+||
T Consensus 161 DAFgtaHRahaS~~Gi~~~lp~~~aG~LmekEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma 240 (415)
T 16pk_A 161 DAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMA 240 (415)
T ss_dssp ECGGGTTSCCTTTTHHHHHHTCCEECHHHHHHHHHHHHHHSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHH
T ss_pred cccccccccccchhhhhhhcccccccHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHH
Confidence 99999999999999999999669999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccccccccccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018160 296 FTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY 359 (360)
Q Consensus 296 ~tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~ 359 (360)
||||+|||++||+||+|+|.++.|++||++|+++|++|+||+|++|+++|+++++++++++++|
T Consensus 241 ~tFl~A~G~~iG~Sl~E~d~~~~A~~ll~ka~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~i 304 (415)
T 16pk_A 241 YTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNI 304 (415)
T ss_dssp HHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEECCSSEEEESSSSCCSSCEECSSSCC
T ss_pred HHHHHHcCCCcCccccChhhHHHHHHHHHHHHhcCCEEECCceeehhhcccCCCceEEeehhcC
Confidence 9999999999999999999999999999999999999999999999999999999988877665
No 6
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Probab=100.00 E-value=5.3e-108 Score=817.18 Aligned_cols=280 Identities=49% Similarity=0.805 Sum_probs=271.2
Q ss_pred CccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCC-CCCCCChhhhHHHHHH
Q 018160 77 ELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG-VTPKFSLAPLVPRLSE 154 (360)
Q Consensus 77 ~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk-VIl~SHlGRPkg-~~~~~SL~pva~~Ls~ 154 (360)
+|+|+|++||||||||||||||+ +|+|+||+||++++|||+||+++||| ||||||||||+| +++++||+|||++|++
T Consensus 7 ti~d~dl~gKrVlvRvD~NVPl~-~g~Itdd~RI~aalpTIk~ll~~gak~Vil~SHlGRP~g~~~~~~SL~pva~~L~~ 85 (415)
T 1qpg_A 7 SVQDLDLKDKRVFIRVDFNVPLD-GKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVAKELQS 85 (415)
T ss_dssp BGGGCCCTTCEEEEECCCCCCBS-SSSBSCCHHHHHHHHHHHHHHTTCCSEEEEECCCSCCCSSCCGGGCSHHHHHHHHH
T ss_pred cccccCcCCCEEEEEecCCCccc-CCccCChHHHHHHHHHHHHHHHCCCCEEEEEecCCCCCCCCCCccCHHHHHHHHHH
Confidence 44555999999999999999998 48999999999999999999999999 999999999998 6899999999999999
Q ss_pred HhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccc----------cCcHH----HHHHHhhcCCeeeeccccc
Q 018160 155 LLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE----------KNDPE----FAKKLASLADLYVNDAFGT 220 (360)
Q Consensus 155 lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~----------~nd~~----fa~~LA~l~DvyVNDAFgt 220 (360)
+||++|+|++||+|++++++|++|++|||+||||+|||+||+ +||++ |+++||+|||+||||||||
T Consensus 86 lLg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~g~~~~~~~~~knd~~~~~~fa~~LA~l~DvyVNDAFgt 165 (415)
T 1qpg_A 86 LLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGT 165 (415)
T ss_dssp HHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSHHHHTEEEETTEEEECCHHHHHHHHHHHHHTCSEEEECCGGG
T ss_pred HHCCCceeCCCcCCHHHHHHHhcCCCCeEEEeccCccChhhccccccccchhccCHHHHHHHHHHHHhhCCEEEecchhh
Confidence 999999999999999999999999999999999999999999 89999 9999999999999999999
Q ss_pred ccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHH
Q 018160 221 AHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYK 300 (360)
Q Consensus 221 aHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~ 300 (360)
|||+||||+||++|+ | ||||||||||++|.+++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+
T Consensus 166 aHRahaS~~gi~~~l-p-~aG~Lm~kEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl~ 243 (415)
T 1qpg_A 166 AHRAHSSMVGFDLPQ-R-AAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKK 243 (415)
T ss_dssp TTSCCHHHHCCCCSC-E-EECHHHHHHHHHHHHHHSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHHHHH
T ss_pred chhhcCcccchhhcc-c-cccHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCEEEeChHHHHHHHH
Confidence 999999999999998 6 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCc-cccccccccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceE-eeCCCC
Q 018160 301 AQGIS-VGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV-CFLNSY 359 (360)
Q Consensus 301 A~G~~-IG~SlvE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~-~~~~~~ 359 (360)
|+|++ ||+||+|++.++.|++||++|+++|++|+||+|++|+++|++++++++ ++.++|
T Consensus 244 A~G~~~iG~Sl~E~d~~~~a~~ll~ka~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~~I 304 (415)
T 1qpg_A 244 VLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGI 304 (415)
T ss_dssp HHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSSSCCCCEEETTTCC
T ss_pred HcCCCcccchhcChhhHHHHHHHHHHHHHcCCEEECCcchhhhhccCCCCCeEEecchhcC
Confidence 99999 999999999999999999999999999999999999999999999888 766554
No 7
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Probab=100.00 E-value=4.4e-108 Score=813.07 Aligned_cols=279 Identities=47% Similarity=0.733 Sum_probs=267.9
Q ss_pred cccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCC-CC-CCCCCChhhhHHH
Q 018160 74 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KG-VTPKFSLAPLVPR 151 (360)
Q Consensus 74 ~i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRP-kg-~~~~~SL~pva~~ 151 (360)
++.+|+|+|++|||||||||||||++ +|+|+||+||++++|||+||+++||||||+|||||| +| +++++||+|||++
T Consensus 5 ~~~ti~d~dl~gKrVlvRvD~NVP~~-~g~Itdd~RI~a~lpTI~~ll~~gakVil~SHlGRP~kg~~~~~~SL~pva~~ 83 (395)
T 4fey_A 5 SFLTLKDVDLKDKKVLVRVDFNVPVK-DGKVTSKVRIEAAIPTIQYILDQGGAVILMSHLGRPTEGEYDSQFSLEPVAKA 83 (395)
T ss_dssp CSCBGGGSCCTTCEEEEECCCCCCEE-TTEESCCHHHHHTHHHHHHHHHHTCEEEEECCCSCCCTTSCCGGGCSHHHHHH
T ss_pred ccCchhhcCcCCCEEEEEeccCCCCc-CCcCCChHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCCCcCcccCHHHHHHH
Confidence 44555556999999999999999997 489999999999999999999999999999999999 67 6889999999999
Q ss_pred HHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcchhcc
Q 018160 152 LSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGV 231 (360)
Q Consensus 152 Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi 231 (360)
|+++||++|.|++||+|+ | +|++|||+||||+|||+||++||++|+++||+|||+|||||||||||+||||+||
T Consensus 84 L~~lLg~~V~f~~d~~~~-----v-~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~Gi 157 (395)
T 4fey_A 84 LSEIINKPVKFAKDWLDG-----V-DVKAGEIVMCENVRFNSGEKKSTDDLSKKIASLGDVFVMDAFATAHRAQASTYGV 157 (395)
T ss_dssp HHHHHCSCEEEESSTTTC-----C-CCCTTCEEEECCGGGSTTTTTTCHHHHHHHHHTCSEEEECCGGGTTSCCTTTTHH
T ss_pred HHHHHCCCcEECcccccc-----c-CCCCCcEEEEeecccCchhhhcHHHHHHHHHhhCCEEEECcchhhhhhcccchhh
Confidence 999999999999999984 5 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccc
Q 018160 232 TKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLV 311 (360)
Q Consensus 232 ~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~Slv 311 (360)
++|+|.+|||+||||||++|++++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+|+|++||+|++
T Consensus 158 ~~~lp~~~aG~Lm~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~ 237 (395)
T 4fey_A 158 AKYIPVACAGILLTNEIQALEKALKSPKKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLY 237 (395)
T ss_dssp HHHSSEEEECHHHHHHHHHHHHHHTSCCSSEEEEEEESCHHHHHHHHHHHTTTCSEEEEEEHHHHHHHHHTTCCCTTCCC
T ss_pred hccCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEEChHHHHHHHHHcCCccCcccc
Confidence 99995599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018160 312 EEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY 359 (360)
Q Consensus 312 E~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~ 359 (360)
|+|.++.|++||++|+++|++|+||+|++|+++|+++++++++++++|
T Consensus 238 E~d~~~~a~~il~~a~~~g~~i~LPvD~vva~~f~~~a~~~~~~~~~i 285 (395)
T 4fey_A 238 EQDLVAEATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDV 285 (395)
T ss_dssp CGGGHHHHHHHHHHHHHTTCBCCCCSEEEEESSSSTTCCCEEEEGGGC
T ss_pred chhhHHHHHHHHHHHHHcCCEEEccceEEEeccccCCCceEEEEcccC
Confidence 999999999999999999999999999999999999999998877665
No 8
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A
Probab=100.00 E-value=1.6e-107 Score=814.16 Aligned_cols=284 Identities=46% Similarity=0.766 Sum_probs=271.3
Q ss_pred cccccccCccCC-CCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCC-CCCCCChh
Q 018160 70 MAKKSVGELSGA-DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG-VTPKFSLA 146 (360)
Q Consensus 70 ~~~~~i~~l~d~-dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk-VIl~SHlGRPkg-~~~~~SL~ 146 (360)
|++++| +|+ |++|||||||||||||++ +|+|+||+||++++|||+||+++||| ||||||||||+| +++++||+
T Consensus 5 ~~~~ti---~d~~dl~gKrVlvRvD~NVP~~-~g~Itdd~RI~aalpTI~~ll~~gak~Vil~SHlGRP~g~~~~~~SL~ 80 (417)
T 3oz7_A 5 GNKLSI---SDLKDIKNKKVLVRVDFNVPIE-NGIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLRNEKYTLK 80 (417)
T ss_dssp TTCCBG---GGCSCCTTCEEEEECCCCCCEE-TTEESCCHHHHTTHHHHHHHHHHTCSEEEEECCCSCCTTSCCGGGCSH
T ss_pred ccCCch---hHhhccCCCEEEEEeccCCCcc-CCcCCChHHHHHHHHHHHHHHHCCCCEEEEEecCCCCCCCCCCccCHH
Confidence 444555 455 899999999999999997 48999999999999999999999999 999999999998 67899999
Q ss_pred hhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccc---------------cCcHHHHHHHhhcCC
Q 018160 147 PLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE---------------KNDPEFAKKLASLAD 211 (360)
Q Consensus 147 pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~---------------~nd~~fa~~LA~l~D 211 (360)
|||++|+++||++|+|++||+|++++++|++|++|||+||||+|||+||+ +|+++|+++||+|||
T Consensus 81 pva~~L~~lLg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~eE~~~~~~~~~~~~k~~~~n~~~fa~~LA~l~D 160 (417)
T 3oz7_A 81 PVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLAD 160 (417)
T ss_dssp HHHHHHHHHHTSCCEEESCSSSHHHHHHHHHSCTTEEEEECCGGGSHHHHSEEECTTSCEEECCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCcEECCCCCCHHHHHHHhcCCCCcEEEEccccccccccccccccccccccCChhhhHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999 457899999999999
Q ss_pred eeeecccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeec
Q 018160 212 LYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLG 291 (360)
Q Consensus 212 vyVNDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliG 291 (360)
+|||||||||||+||||+||+ ++|+||||||||||++|++++++|+|||+||+||+||||||++|+||++|||+||||
T Consensus 161 vyVNDAFgtaHRahaS~~Gi~--~~~~~aG~LmekEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiG 238 (417)
T 3oz7_A 161 VFINDAFGTAHRAHSSMVGVK--LNVKASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIG 238 (417)
T ss_dssp EEEECCGGGTTSCCHHHHCCC--CSCEEECHHHHHHHHHHHHHHTSCCSSEEEEEECSCSTTSHHHHHHHHTTCSEEEEE
T ss_pred EEEECcchhhhhccCcccccc--cccccccHHHHHHHHHHHHHHcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEec
Confidence 999999999999999999999 568999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH-cCCccccccccccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEe-eCCCC
Q 018160 292 GGMIFTFYKA-QGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVC-FLNSY 359 (360)
Q Consensus 292 G~ma~tFL~A-~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~-~~~~~ 359 (360)
|+||||||+| +|++||+|++|++.++.|++||++|+++|++|+||+|++|+++|+++++++++ +.++|
T Consensus 239 Ggma~tFl~A~~G~~iG~Sl~e~d~~~~a~~il~~a~~~g~~i~LPvD~vva~~f~~~a~~~~~~~~~~I 308 (417)
T 3oz7_A 239 GGMAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGI 308 (417)
T ss_dssp TTHHHHHHHHHHCCCBTTSCCCTTTHHHHHHHHHHHHHTTCEEECCSEEEEESSSSTTSCEEEEESSSCB
T ss_pred cHHHHHHHHHHcCCccCchhcCccChHHHHHHHHHHHHcCCEEECCceeEEeecccCCCCeEEecccccC
Confidence 9999999999 89999999999999999999999999999999999999999999999999888 56654
No 9
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ...
Probab=100.00 E-value=9.2e-108 Score=815.67 Aligned_cols=280 Identities=48% Similarity=0.810 Sum_probs=268.8
Q ss_pred CccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCC-CC-CCCChhhhHHHHH
Q 018160 77 ELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG-VT-PKFSLAPLVPRLS 153 (360)
Q Consensus 77 ~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk-VIl~SHlGRPkg-~~-~~~SL~pva~~Ls 153 (360)
+|+|+|++|||||||||||||++ +|+|+||+||++++|||+||+++||| ||||||||||+| .+ +++||+|||++|+
T Consensus 7 ti~d~dl~gKrVlvRvD~NVPl~-~g~Itdd~RI~aalpTIk~ll~~gak~Vil~SHlGRPkg~~~~~~~SL~pva~~L~ 85 (416)
T 2wzb_A 7 TLDKLDVKGKRVVMRVDFNVPMK-NNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELK 85 (416)
T ss_dssp BGGGCCCTTCEEEEECCCCCCEE-TTEESCCHHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCCHHHHCSHHHHHHHH
T ss_pred cccccCcCCCEEEEEecCCCccc-CCccCChHHHHHHHHHHHHHHHCCCCEEEEEecCCCCCCCCCccccCHHHHHHHHH
Confidence 44555999999999999999997 48999999999999999999999999 999999999998 56 7999999999999
Q ss_pred HHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccc-----------cCcHH----HHHHHhhcCCeeeeccc
Q 018160 154 ELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE-----------KNDPE----FAKKLASLADLYVNDAF 218 (360)
Q Consensus 154 ~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~-----------~nd~~----fa~~LA~l~DvyVNDAF 218 (360)
++||++|+|++||+|++++++|++|++|||+||||+|||+||+ +||++ |+++||+|||+||||||
T Consensus 86 ~lLg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~~~~~~~~~~~~knd~e~~~~fa~~LA~l~DvyVNDAF 165 (416)
T 2wzb_A 86 SLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAF 165 (416)
T ss_dssp HHHTSCCEECSCSSSHHHHHHHHSCCTTEEEECCCGGGSHHHHTCC----------CHHHHHHHHHHHHHTCSEEEECCG
T ss_pred HHHCCCCeeCCccCCHHHHHHHhcCCCCcEEEecccccchhhcccccccccccccCCHHHHHHHHHHHHhhCCEEEeccc
Confidence 9999999999999999999999999999999999999999999 89999 99999999999999999
Q ss_pred ccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHH
Q 018160 219 GTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTF 298 (360)
Q Consensus 219 gtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tF 298 (360)
|||||+||||+||++|+ | ||||||||||++|++++++|+|||+||+||+||||||++|+||++|||+|||||+|||||
T Consensus 166 gtaHRahaS~~gi~~~l-p-~aG~Lm~kEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TF 243 (416)
T 2wzb_A 166 GTAHRAHSSMVGVNLPQ-K-AGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTF 243 (416)
T ss_dssp GGTTCCCHHHHCCCCSC-E-EECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHGGGHHHHTTTCSEEEECGGGHHHH
T ss_pred ccchhhccchhhhhhcc-h-hhhHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeChHHHHHH
Confidence 99999999999999998 6 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCc-cccccccccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceE-eeCCCC
Q 018160 299 YKAQGIS-VGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV-CFLNSY 359 (360)
Q Consensus 299 L~A~G~~-IG~SlvE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~-~~~~~~ 359 (360)
|+|+|++ ||+||+|++.++.|++||++|+++|++|+||+|++|+++|++++++++ ++.++|
T Consensus 244 l~A~G~~~iG~Sl~E~d~~~~a~~ll~ka~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~~I 306 (416)
T 2wzb_A 244 LKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGI 306 (416)
T ss_dssp HHHHHCCCCTTSCCCHHHHTTHHHHHHHHHHTTCEEECCCEEEEESSSSTTCCEEEEETTTCC
T ss_pred HHHcCCCcccchhcChhhHHHHHHHHHHHHHcCCEEECCcchhhhhccCCCCCeEEecchhcC
Confidence 9999999 999999999999999999999999999999999999999999999888 766654
No 10
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.9e-106 Score=799.77 Aligned_cols=274 Identities=48% Similarity=0.735 Sum_probs=261.7
Q ss_pred cccccccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCC-CC-CCCCCChhh
Q 018160 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KG-VTPKFSLAP 147 (360)
Q Consensus 70 ~~~~~i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRP-kg-~~~~~SL~p 147 (360)
|++++|.+ +|++|||||||||||||++ +|+|+||+||++++|||+||+++||||||+|||||| || +++++||+|
T Consensus 1 m~k~ti~d---~dl~gKrVlvRvD~NVP~~-~g~Itdd~RI~aalpTI~~ll~~gakvil~SHlGRP~kG~~~~~~SL~p 76 (387)
T 1zmr_A 1 MSVIKMTD---LDLAGKRVFIRADLNVPVK-DGKVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLP 76 (387)
T ss_dssp -CCCBGGG---SCCTTCEEEEECCCCCCEE-TTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSSCBTTBCCGGGCSHH
T ss_pred CCCCcccc---cCcCCCEEEEEecCCCccc-CCccCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCCCCCcCCccCHHH
Confidence 44555555 5899999999999999997 489999999999999999999999999999999999 88 589999999
Q ss_pred hHHHHHHHhCCceeecCCCC-CHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCeeeecccccccccCc
Q 018160 148 LVPRLSELLGIQVVKADDCI-GPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHA 226 (360)
Q Consensus 148 va~~Ls~lLg~~V~fv~d~~-G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahA 226 (360)
||++|+++||++|+|++||+ | |+ |++|||+||||+|||+||++||++|+++||+|||+|||||||||||+||
T Consensus 77 va~~L~~lLg~~V~f~~d~~~G------v~-l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRaha 149 (387)
T 1zmr_A 77 VVNYLKDKLSNPVRLVKDYLDG------VD-VAEGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQA 149 (387)
T ss_dssp HHHHHHHHCSSCEEEESCCTTC------CC-CCTTCEEEECCGGGSTTTTTTCHHHHHHHHHTCSEEEECCGGGTTSCCC
T ss_pred HHHHHHHHhCCCCEECcccccC------cc-CCCCeEEEEcccCCCcchhcCCHHHHHHHHhhCCEEEeccccccccccC
Confidence 99999999999999999999 9 88 9999999999999999999999999999999999999999999999999
Q ss_pred chhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCcc
Q 018160 227 STEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISV 306 (360)
Q Consensus 227 S~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~I 306 (360)
||+||++|+|++|||+||||||++|++++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+|+|++|
T Consensus 150 S~~gi~~~lp~~~aG~Lm~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~i 229 (387)
T 1zmr_A 150 STHGIGKFADVACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDV 229 (387)
T ss_dssp CCCCHHHHSSEEEECHHHHHHHHHHHHHHSSCSSSEEEEEEESCTTTTHHHHHHHHTTCSEEEEEEHHHHHHHHHTTCCC
T ss_pred chhhhhhhCchhhccHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCEEEeCcHHHHHHHHHcCCCC
Confidence 99999999965999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCCC
Q 018160 307 GSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNSY 359 (360)
Q Consensus 307 G~SlvE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~~ 359 (360)
|+||+|+|.++.|++||++ ++|+||+|++|+++|+++++++++++++|
T Consensus 230 G~Sl~E~d~~~~a~~ll~~-----~~i~lPvD~vva~~f~~~~~~~~~~~~~i 277 (387)
T 1zmr_A 230 GKSLYEADLVDEAKRLLTT-----CNIPVPSDVRVATEFSETAPATLKSVNDV 277 (387)
T ss_dssp TTCSCCGGGHHHHHHHHTT-----SCCCCCSEEEEESSSSSSCCCEEEEGGGC
T ss_pred CccccchhhHHHHHHHHHh-----CCccCCccceeeeccCCCCceEEeehhhC
Confidence 9999999999999999976 88999999999999999999988887654
No 11
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.3e-105 Score=792.89 Aligned_cols=273 Identities=34% Similarity=0.519 Sum_probs=262.9
Q ss_pred cCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHH
Q 018160 76 GELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSEL 155 (360)
Q Consensus 76 ~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~l 155 (360)
.+|+|+|++||||||||||||||+ +|+|+||+||++++|||+||+++||||||+|||||| |.++++||+|||++|+++
T Consensus 2 ~ti~d~dl~gKrVlvRvD~NVPl~-~g~Itdd~RI~a~lpTI~~ll~~gakVvl~SHlGRP-G~~~~~SL~pva~~L~~l 79 (410)
T 2cun_A 2 FRLEDFNFHNKTVFLRVDLNSPMK-DGKIISDARFKAVLPTIRYLIESGAKVVIGTHQGKP-YSEDYTTTEEHARVLSEL 79 (410)
T ss_dssp CBGGGSCCTTCEEEEECCCCCCEE-TTEECCCHHHHHTHHHHHHHHHTTCEEEEECCCSCT-TCTTCCCSHHHHHHHHHH
T ss_pred CchhhcCCCCCEEEEEecCCCccc-CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCCCC-CCCCCcCHHHHHHHHHHH
Confidence 466677999999999999999997 489999999999999999999999999999999999 878999999999999999
Q ss_pred hCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcH-------HHHHHHhhcCCeeeecccccccccCcch
Q 018160 156 LGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDP-------EFAKKLASLADLYVNDAFGTAHRAHAST 228 (360)
Q Consensus 156 Lg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~-------~fa~~LA~l~DvyVNDAFgtaHRahAS~ 228 (360)
||++|+|++||+|++++++|++|++|||+||||+|||+||++||+ +|+++||+|||+|||||||||||+||||
T Consensus 80 Lg~~V~f~~d~~G~~a~~~i~~l~~G~VlLLEN~RF~~eE~~nd~~e~~a~~~fa~~LA~l~DvyVNDAFgtaHRahaS~ 159 (410)
T 2cun_A 80 LDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSL 159 (410)
T ss_dssp HTSCEEECSCSSSHHHHHHHHTCCTTCEEECSCGGGBTTTTSCCCHHHHTTSHHHHHHHTTCSEEEECCGGGTTCCCHHH
T ss_pred HCCCCeeCCCcCCHHHHHHHhcCCCCeEEEEcccccccccccCCchhhhhHHHHHHHHHhhCCEEEecccccccccCCce
Confidence 999999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred hccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHh--hCeeeechHHHHHHHHHcCCcc
Q 018160 229 EGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLET--CDILLLGGGMIFTFYKAQGISV 306 (360)
Q Consensus 229 ~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~k--vD~lliGG~ma~tFL~A~G~~I 306 (360)
+||++++ |+|||+||||||++|++++++|+|||+||+||+||||||++|+||++| ||+|||||+||||||+|+|++|
T Consensus 160 ~Gi~~~l-ps~aG~LmekEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~k~~vD~liiGGgma~tFl~A~G~~i 238 (410)
T 2cun_A 160 VGFARIK-PMIMGFLMEKEIEALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDL 238 (410)
T ss_dssp HTTTTTS-CEEECHHHHHHHHHHHHHHTCCCSCEEEEECSSCHHHHHHHHHHHHHTTSCSEEEECHHHHHHHHHHHTCCC
T ss_pred echhhhh-hhhhhHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHhcccCCCEEEEChHHHHHHHHHcCCCc
Confidence 9999998 789999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ccc---cccc----cchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceEeeCCC
Q 018160 307 GSS---LVEE----DKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVCFLNS 358 (360)
Q Consensus 307 G~S---lvE~----d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~~~~~~ 358 (360)
|+| ++|+ |.++.|++||++| |++|+||+|++|+++ ++++++++++
T Consensus 239 G~S~~~l~E~~g~~d~~~~a~~ll~ka---g~~i~lPvD~vva~~----a~~~~~~~~~ 290 (410)
T 2cun_A 239 GRKNVEFMKKKGLLDYVKHAEEILDEF---YPYIRTPVDFAVDYK----GERVEIDLLS 290 (410)
T ss_dssp CHHHHHHHHTTTGGGGHHHHHHHHHHH---GGGEECCSEEEEEET----TEEEEEESSS
T ss_pred CcchhhhhhcccchhhHHHHHHHHHhc---cCeEeCCceeEEecC----CCeEEEeccc
Confidence 999 9999 9999999999998 889999999999997 5566777664
No 12
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1
Probab=100.00 E-value=4.5e-79 Score=609.24 Aligned_cols=217 Identities=48% Similarity=0.790 Sum_probs=211.9
Q ss_pred CCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccCccccc----------cCcHH----HHHHH
Q 018160 141 PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE----------KNDPE----FAKKL 206 (360)
Q Consensus 141 ~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF~~eE~----------~nd~~----fa~~L 206 (360)
+++||+|||++|+++||++|+|++||+|++++++|++|++|||+||||+|||+||+ +||++ |+++|
T Consensus 2 ~~~SL~pva~~L~~lLg~~V~f~~d~vG~~~~~~v~~l~~G~VlLLEN~RF~~~E~g~~~~~~~~~knd~e~~~~fa~~L 81 (416)
T 1fw8_A 2 SKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHEL 81 (416)
T ss_dssp CTTCSHHHHHHHHHHHTSCEEECSCSSSHHHHHHHHTSCTTEEEECCCGGGSHHHHSEEEETTEEEECCHHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHHCCCCEeCCCCCCHHHHHHHHcCCCCeEEEEcccccccccccccccccchhccCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999 89999 99999
Q ss_pred hhcCCeeeecccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhhC
Q 018160 207 ASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCD 286 (360)
Q Consensus 207 A~l~DvyVNDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD 286 (360)
|+|||+|||||||||||+||||+||++|+ | ||||||||||++|.+++++|+|||+||+||+||||||++|+||++|||
T Consensus 82 A~l~DvyVNDAFgtAHRahaS~~Gi~~~l-p-~aG~LmekEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD 159 (416)
T 1fw8_A 82 SSLADVYINDAFGTAHRAHSSMVGFDLPQ-R-AAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVD 159 (416)
T ss_dssp HTTCSEEEECCGGGTTSCCHHHHCCCCSC-E-EECHHHHHHHHHHHHHHHSCCSSEEEEEECSCSTTTHHHHHHHHTTCS
T ss_pred HhhCCEEEeccccccchhcCchhhhhhhh-c-cccHHHHHHHHHHHHHHcCCCCCeEEEEcCcchhhHHHHHHHHHHhhC
Confidence 99999999999999999999999999998 6 999999999999999999999999999999999999999999999999
Q ss_pred eeeechHHHHHHHHHcCCc-cccccccccchHHHHHHHHHHHhCCCeEEccceEEEecCCCCCCCceE-eeCCCC
Q 018160 287 ILLLGGGMIFTFYKAQGIS-VGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV-CFLNSY 359 (360)
Q Consensus 287 ~lliGG~ma~tFL~A~G~~-IG~SlvE~d~i~~Ak~il~~a~~~g~~I~LPvD~vva~~f~~~a~~~~-~~~~~~ 359 (360)
+|||||+||||||+|+|++ ||+||+|++.++.|++||++|+++|++|+||+|++|+++|++++++++ ++.++|
T Consensus 160 ~liiGGgma~TFl~A~G~~~IG~SL~E~d~~~~a~~ll~kak~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~~I 234 (416)
T 1fw8_A 160 SIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGI 234 (416)
T ss_dssp EEEEEGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTCCEEEEETTTCC
T ss_pred eeEeChHHHHHHHHHcCCCccCccccChhhHHHHHHHHHHHHhcCCEEECCceEEEeeccCCCCCeEEecchhcC
Confidence 9999999999999999999 999999999999999999999999999999999999999999999888 766554
No 13
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1
Probab=99.85 E-value=6e-22 Score=198.14 Aligned_cols=64 Identities=50% Similarity=0.828 Sum_probs=59.5
Q ss_pred ccCccCCCCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCCC
Q 018160 75 VGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGV 139 (360)
Q Consensus 75 i~~l~d~dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAk-VIl~SHlGRPkg~ 139 (360)
..+|+|+|++|||||+||||||||+ +|+|+||+||++++|||+||+++||| |||+||||||+|+
T Consensus 350 k~TIdD~d~~gk~vl~RvD~NvP~~-~g~i~d~~Ri~~~~pti~~l~~~gak~vvl~sH~grp~g~ 414 (416)
T 1fw8_A 350 KLSVQDLDLKDKRVFIRVDFNVPLD-GKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGRPNGE 414 (416)
T ss_dssp SCBGGGSCCTTCEEEEECCCCCCBS-SSSBSCTHHHHHHHHHHHHHHHTCCSEEEEECCCSCCCSS
T ss_pred cccccccccccccceeccccccCcc-CCcccchHHHHHHhHHHHHHHHCCCceEEEeccCCCCCCC
Confidence 3677778999999999999999998 58999999999999999999999997 9999999999874
No 14
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=80.68 E-value=6.2 Score=37.76 Aligned_cols=82 Identities=15% Similarity=0.259 Sum_probs=52.6
Q ss_pred hhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccC
Q 018160 113 AVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (360)
Q Consensus 113 ~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF 191 (360)
++|+++.|+++|.. +.+++|-.||.|...+..-.|+ ..+.+..|.||.-.++.-.+++.+.++++++-=+++.-.-++
T Consensus 14 a~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v-~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~i 92 (314)
T 3tqq_A 14 AVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPV-KEIARQNEIPIIQPFSLRDEVEQEKLIAMNADVMVVVAYGLI 92 (314)
T ss_dssp GHHHHHHHHHSSSEEEEEECCCC----------CCHH-HHHHHHTTCCEECCSCSSSHHHHHHHHTTCCSEEEEESCCSC
T ss_pred HHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHH-HHHHHHcCCCEECcccCCCHHHHHHHHhcCCCEEEEcCcccc
Confidence 67999999999988 5678888999874333333454 445556799976555665677778888887766666666677
Q ss_pred cccc
Q 018160 192 YKEE 195 (360)
Q Consensus 192 ~~eE 195 (360)
.+.+
T Consensus 93 lp~~ 96 (314)
T 3tqq_A 93 LPKK 96 (314)
T ss_dssp CCHH
T ss_pred cCHH
Confidence 7766
No 15
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=76.57 E-value=5.5 Score=38.24 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=55.9
Q ss_pred hhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccC
Q 018160 113 AVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (360)
Q Consensus 113 ~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF 191 (360)
++|+++.|+++|.. +.+++|-.||.|...++.-.|+. .+.+..|.||.-.++.-+++..+.++++++-=+++.-.-|+
T Consensus 16 a~~~L~~L~~~~~~v~~Vvt~pd~~~gRg~~l~~~pv~-~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~~i 94 (317)
T 3rfo_A 16 SVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVK-VEAEKHGIPVLQPLRIREKDEYEKVLALEPDLIVTAAFGQI 94 (317)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCCCEETTTTEECCCHHH-HHHHHTTCCEECCSCTTSHHHHHHHHHHCCSEEEESSCCSC
T ss_pred HHHHHHHHHHCCCcEEEEEeCCCcccCCCcccCCCHHH-HHHHHcCCCEEccccCCCHHHHHHHHhcCCCEEEEcCchhh
Confidence 67999999999988 55788888887744444444654 44555789986555665666666677766654555555566
Q ss_pred cccc
Q 018160 192 YKEE 195 (360)
Q Consensus 192 ~~eE 195 (360)
.+++
T Consensus 95 lp~~ 98 (317)
T 3rfo_A 95 VPNE 98 (317)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 6655
No 16
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=75.63 E-value=8.7 Score=36.84 Aligned_cols=83 Identities=14% Similarity=0.223 Sum_probs=51.5
Q ss_pred hhhHHHHHHHHCCCeE-EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEeccc
Q 018160 112 AAVPTIKHLIQNGAKV-ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVR 190 (360)
Q Consensus 112 a~lpTI~~Lle~GAkV-Il~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlR 190 (360)
=+.|+++.|+++|..| .++++-.||.|...+..-.|+ ..+.+..|.||.-..+.-.+++.+.++++++-=+++.-.-|
T Consensus 18 fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v-~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~~ 96 (318)
T 3q0i_A 18 FAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPV-KTLALEHNVPVYQPENFKSDESKQQLAALNADLMVVVAYGL 96 (318)
T ss_dssp HHHHHHHHHHTSSSEEEEEECCCC---------CCCHH-HHHHHHTTCCEECCSCSCSHHHHHHHHTTCCSEEEESSCCS
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHH-HHHHHHcCCCEEccCcCCCHHHHHHHHhcCCCEEEEeCccc
Confidence 3679999999999994 577888899864333333355 44556679998555555566777778877765555555556
Q ss_pred Ccccc
Q 018160 191 FYKEE 195 (360)
Q Consensus 191 F~~eE 195 (360)
+.+++
T Consensus 97 ilp~~ 101 (318)
T 3q0i_A 97 LLPKV 101 (318)
T ss_dssp CCCHH
T ss_pred cCCHH
Confidence 66665
No 17
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=75.58 E-value=10 Score=36.17 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=53.7
Q ss_pred hhHHHHHHHHCCCeE-EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccC
Q 018160 113 AVPTIKHLIQNGAKV-ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (360)
Q Consensus 113 ~lpTI~~Lle~GAkV-Il~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF 191 (360)
+.|+++.|+++|..| .++++-.||.|...+..-.|+.+ +.+..|.||.-.+++-.++..+.++++++-=+++.-.-|+
T Consensus 15 a~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~-~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~~i 93 (314)
T 1fmt_A 15 AARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKV-LAEEKGLPVFQPVSLRPQENQQLVAELQADVMVVVAYGLI 93 (314)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHH-HHHHTTCCEECCSCSCSHHHHHHHHHTTCSEEEEESCCSC
T ss_pred HHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHH-HHHHcCCcEEecCCCCCHHHHHHHHhcCCCEEEEeecccc
Confidence 579999999999985 57788788877434444456644 4556799985555555677777788877755555555577
Q ss_pred cccc
Q 018160 192 YKEE 195 (360)
Q Consensus 192 ~~eE 195 (360)
.+++
T Consensus 94 lp~~ 97 (314)
T 1fmt_A 94 LPKA 97 (314)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 7665
No 18
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=69.26 E-value=18 Score=34.36 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=52.8
Q ss_pred hhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccC
Q 018160 113 AVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (360)
Q Consensus 113 ~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF 191 (360)
+.|+++.|+++|.. +.++|+-.+|.| +..-.|+.+ +.+..|.||...++.-.++..+.++++++-=+++.-.-|+
T Consensus 12 a~~~L~~L~~~~~~i~~Vvt~~d~~~g---~~~~~~v~~-~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~~i 87 (305)
T 2bln_A 12 GCLGIEALLAAGYEISAIFTHTDNPGE---KAFYGSVAR-LAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHL 87 (305)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCC---------CCCCHHH-HHHHHTCCEECCSCCCSHHHHHHHHHTCCSEEEEESCCSC
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCCCC---CcCccHHHH-HHHHcCCCEECCCcCCcHHHHHHHHhcCCCEEEEeccccc
Confidence 57899999999999 467788777766 233334433 4456799998887776677778888887755555556677
Q ss_pred cccc
Q 018160 192 YKEE 195 (360)
Q Consensus 192 ~~eE 195 (360)
.+++
T Consensus 88 lp~~ 91 (305)
T 2bln_A 88 IYDE 91 (305)
T ss_dssp CCHH
T ss_pred cCHH
Confidence 7766
No 19
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=69.14 E-value=23 Score=32.46 Aligned_cols=180 Identities=18% Similarity=0.148 Sum_probs=96.1
Q ss_pred hHhhhhHHHHHHHHC--CCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEE
Q 018160 109 RIRAAVPTIKHLIQN--GAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLL 186 (360)
Q Consensus 109 RI~a~lpTI~~Lle~--GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLL 186 (360)
+++..+..++.+.++ +..+++|+-+. | -..+.++..++.+.+ .|.+-..++|.-.++..+.++.++.-++
T Consensus 77 ~~~~~~~~v~~ir~~~~~~Pi~~m~y~n-~---v~~~g~~~f~~~~~~-aG~dgvii~dl~~ee~~~~~~~~~~~gl--- 148 (262)
T 2ekc_A 77 RFEDVLELSETLRKEFPDIPFLLMTYYN-P---IFRIGLEKFCRLSRE-KGIDGFIVPDLPPEEAEELKAVMKKYVL--- 148 (262)
T ss_dssp CHHHHHHHHHHHHHHCTTSCEEEECCHH-H---HHHHCHHHHHHHHHH-TTCCEEECTTCCHHHHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEecCc-H---HHHhhHHHHHHHHHH-cCCCEEEECCCCHHHHHHHHHHHHHcCC---
Confidence 445566778888776 66788874333 1 123345566666654 3777666678776666666655543221
Q ss_pred ecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEe
Q 018160 187 ENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIV 266 (360)
Q Consensus 187 ENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~vaIl 266 (360)
+.+.+... ..+++..+.++..++-|+ -|-+...++|...-. .+.-+...++.+.+.. +-| +++=
T Consensus 149 ~~i~l~~p--~t~~~rl~~ia~~a~gfi------y~vs~~g~TG~~~~~----~~~~~~~~v~~vr~~~---~~p-v~vG 212 (262)
T 2ekc_A 149 SFVPLGAP--TSTRKRIKLICEAADEMT------YFVSVTGTTGAREKL----PYERIKKKVEEYRELC---DKP-VVVG 212 (262)
T ss_dssp EECCEECT--TCCHHHHHHHHHHCSSCE------EEESSCC-------------CHHHHHHHHHHHHHC---CSC-EEEE
T ss_pred cEEEEeCC--CCCHHHHHHHHHhCCCCE------EEEecCCccCCCCCc----CcccHHHHHHHHHhhc---CCC-EEEe
Confidence 11222221 134567777777765432 122333344443211 1122334555555543 445 4554
Q ss_pred cCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccccccchHHHHHHHHHHHh
Q 018160 267 GGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKA 328 (360)
Q Consensus 267 GGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~ 328 (360)
|| |++.=.+-+ +..-+|.+++|.++...+- ++..+.++++++..++
T Consensus 213 ~G--I~t~e~~~~-~~~gADgvIVGSai~~~~~-------------~~~~~~~~~~~~~~~~ 258 (262)
T 2ekc_A 213 FG--VSKKEHARE-IGSFADGVVVGSALVKLAG-------------QKKIEDLGNLVKELKE 258 (262)
T ss_dssp SS--CCSHHHHHH-HHTTSSEEEECHHHHHHHH-------------TTCHHHHHHHHHHHHH
T ss_pred CC--CCCHHHHHH-HHcCCCEEEECHHHHhhhh-------------hhhHHHHHHHHHHHHH
Confidence 44 555555555 6667999999999886651 1235667777766554
No 20
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=54.20 E-value=12 Score=30.13 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.6
Q ss_pred hhhhHHHHHHHHCCCeEEEEecCCCCC
Q 018160 111 RAAVPTIKHLIQNGAKVILSSHLGRPK 137 (360)
Q Consensus 111 ~a~lpTI~~Lle~GAkVIl~SHlGRPk 137 (360)
.....+|+.|.++|.+++++| |||.
T Consensus 27 ~~~~~~l~~l~~~Gi~~~iaT--GR~~ 51 (126)
T 1xpj_A 27 LDVIEQLREYHQLGFEIVIST--ARNM 51 (126)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE--CTTT
T ss_pred HHHHHHHHHHHhCCCeEEEEe--CCCh
Confidence 456788999999999999999 8874
No 21
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=53.79 E-value=72 Score=29.80 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=93.4
Q ss_pred hhHhhhhHHHHHHHHC--CCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCC-C-c-
Q 018160 108 TRIRAAVPTIKHLIQN--GAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPE-G-G- 182 (360)
Q Consensus 108 ~RI~a~lpTI~~Lle~--GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~-G-e- 182 (360)
.+++..+..++.+.++ ...+|+|+.+.- -..+.++.+++.+.+. |.+-..++|.--++.++.++.++. | +
T Consensus 79 ~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~----v~~~g~~~f~~~~~~a-GvdGvIipDlp~ee~~~~~~~~~~~gl~~ 153 (271)
T 3nav_A 79 TTPDICFELIAQIRARNPETPIGLLMYANL----VYARGIDDFYQRCQKA-GVDSVLIADVPTNESQPFVAAAEKFGIQP 153 (271)
T ss_dssp CCHHHHHHHHHHHHHHCTTSCEEEEECHHH----HHHTCHHHHHHHHHHH-TCCEEEETTSCGGGCHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecCcH----HHHHhHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHHHHHcCCeE
Confidence 4455677888888875 456889865431 1234567777777664 788777888865555555544433 3 2
Q ss_pred EEEEecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCCCe
Q 018160 183 VLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPF 262 (360)
Q Consensus 183 VlLLENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~ 262 (360)
|.|. .- ..+++..+++++.++=||- --++..++|...-++ .-+...++.+.+. .+.|.
T Consensus 154 I~lv------ap--~t~~eri~~i~~~~~gfiY------~vs~~GvTG~~~~~~-----~~~~~~v~~vr~~---~~~Pv 211 (271)
T 3nav_A 154 IFIA------PP--TASDETLRAVAQLGKGYTY------LLSRAGVTGAETKAN-----MPVHALLERLQQF---DAPPA 211 (271)
T ss_dssp EEEE------CT--TCCHHHHHHHHHHCCSCEE------ECCCC--------CC-----HHHHHHHHHHHHT---TCCCE
T ss_pred EEEE------CC--CCCHHHHHHHHHHCCCeEE------EEeccCCCCcccCCc-----hhHHHHHHHHHHh---cCCCE
Confidence 3233 11 1235688888888876651 012333444433221 1133344444443 34564
Q ss_pred EEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHH
Q 018160 263 AAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYK 300 (360)
Q Consensus 263 vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~ 300 (360)
+ + |--|++.=.+-+.+...+|.+|+|.++...+-.
T Consensus 212 ~-v--GfGIst~e~~~~~~~~gADgvIVGSAiv~~i~~ 246 (271)
T 3nav_A 212 L-L--GFGISEPAQVKQAIEAGAAGAISGSAVVKIIET 246 (271)
T ss_dssp E-E--CSSCCSHHHHHHHHHTTCSEEEESHHHHHHHHH
T ss_pred E-E--ECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHh
Confidence 3 3 555777777766777789999999999877643
No 22
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=49.65 E-value=1.2e+02 Score=28.42 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEE
Q 018160 112 AAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLL 186 (360)
Q Consensus 112 a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLL 186 (360)
+..+.|-..+.+|-+|+++|--|-|.=+++ -..+++.+.+ -|.+|..+|-+-.-.+--+...+...++.+.
T Consensus 76 ~~~~~li~~l~~G~~Va~lsdaGdP~i~~~---g~~lv~~~~~-~gi~v~viPGiSA~~aA~a~~Glp~~~f~f~ 146 (296)
T 3kwp_A 76 ERIPQLIAKLKQGMQIAQVSDAGMPSISDP---GHELVNACID-AHIPVVPLPGANAGLTALIASGLAPQPFYFY 146 (296)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSBCTTSSHH---HHHHHHHHHH-TTCCEEECCCCCHHHHHHHHHSSCCSSEEEE
T ss_pred hHhHHHHHHHhcCceEEEeccCCCCCCCCC---chHHHHHHHH-cCCCeeeCCCcccchHHHHhccCCCCceeEE
Confidence 445666666788999999999998831211 1123333333 2788999888765555555566666665543
No 23
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A
Probab=45.67 E-value=13 Score=32.94 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=26.3
Q ss_pred CCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|+++++..+.+...+|+.|.++|.+++++| |||
T Consensus 11 GTLl~~~~~~~~~~~l~~l~~~g~~~~i~T--gr~ 43 (249)
T 2zos_A 11 KTLIPGYEPDPAKPIIEELKDMGFEIIFNS--SKT 43 (249)
T ss_dssp TTTCTTSCSGGGHHHHHHHHHTTEEEEEBC--SSC
T ss_pred CCccCCCCcHHHHHHHHHHHHCCCEEEEEe--CCC
Confidence 555544456667889999999999999998 887
No 24
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=44.89 E-value=18 Score=31.79 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=26.2
Q ss_pred CCcCcchh--H-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITDDTR--I-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~Dd~R--I-~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|.++|+.+ | .+....|+.|.++|.+++++| |||
T Consensus 11 GTLl~~~~~~i~~~~~~al~~l~~~G~~~~iaT--GR~ 46 (261)
T 2rbk_A 11 GTLVSFETHRIPSSTIEALEAAHAKGLKIFIAT--GRP 46 (261)
T ss_dssp TTTBCTTTSSCCHHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred CCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEEC--CCh
Confidence 67777655 3 567778999999999999876 887
No 25
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=43.65 E-value=18 Score=32.48 Aligned_cols=62 Identities=15% Similarity=-0.017 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCChhhhHHHHHHHh---CCceeecCCCCC-HHHHHHHhcCCCCcEEEEecccCccc
Q 018160 133 LGRPKGVTPKFSLAPLVPRLSELL---GIQVVKADDCIG-PEVEKLVASLPEGGVLLLENVRFYKE 194 (360)
Q Consensus 133 lGRPkg~~~~~SL~pva~~Ls~lL---g~~V~fv~d~~G-~~v~~~i~~l~~GeVlLLENlRF~~e 194 (360)
+|+|......-++...+..+-++- ..++.|+|--.+ ......+..|++|.+++++|+-+.+.
T Consensus 95 wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~DNv~~r~~ 160 (202)
T 3cvo_A 95 WGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLFDDYSQRRW 160 (202)
T ss_dssp GGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEETTGGGCSS
T ss_pred ccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEEeCCcCCcc
Confidence 466654333333433332221222 257888875433 45666789999999999999755543
No 26
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=43.36 E-value=1.4e+02 Score=27.80 Aligned_cols=160 Identities=12% Similarity=0.105 Sum_probs=90.5
Q ss_pred hhHhhhhHHHHHHHHC--CCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCC-C-c-
Q 018160 108 TRIRAAVPTIKHLIQN--GAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPE-G-G- 182 (360)
Q Consensus 108 ~RI~a~lpTI~~Lle~--GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~-G-e- 182 (360)
.+++..+..++.+.++ ...+++|+.+. | -..+.++.+++.+.+. |.+-..++|.--++..+.++.++. | +
T Consensus 77 ~~~~~~~~~v~~ir~~~~~~Pivlm~Y~n-p---v~~~g~e~f~~~~~~a-Gvdgvii~Dlp~ee~~~~~~~~~~~gl~~ 151 (267)
T 3vnd_A 77 TTSSDCFDIITKVRAQHPDMPIGLLLYAN-L---VFANGIDEFYTKAQAA-GVDSVLIADVPVEESAPFSKAAKAHGIAP 151 (267)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEECHH-H---HHHHCHHHHHHHHHHH-TCCEEEETTSCGGGCHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecCc-H---HHHhhHHHHHHHHHHc-CCCEEEeCCCCHhhHHHHHHHHHHcCCeE
Confidence 4556678889998875 45688885443 1 1234567777777765 888877788765555555544433 3 2
Q ss_pred EEEEecccCccccccCcHHHHHHHhhcCC--eeeecccccccccCcchhccccccCccchhhhHHHHHHHHHhhhcCCCC
Q 018160 183 VLLLENVRFYKEEEKNDPEFAKKLASLAD--LYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKR 260 (360)
Q Consensus 183 VlLLENlRF~~eE~~nd~~fa~~LA~l~D--vyVNDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~~~p~r 260 (360)
|.++ .-. .+++..+.+++.++ +|+..- .-++|...-+++ -+..-++.+.+. .+-
T Consensus 152 i~li------aP~--t~~eri~~i~~~~~gfvY~vS~--------~GvTG~~~~~~~-----~~~~~v~~vr~~---~~~ 207 (267)
T 3vnd_A 152 IFIA------PPN--ADADTLKMVSEQGEGYTYLLSR--------AGVTGTESKAGE-----PIENILTQLAEF---NAP 207 (267)
T ss_dssp ECEE------CTT--CCHHHHHHHHHHCCSCEEESCC--------CCCC-------------CHHHHHHHHHTT---TCC
T ss_pred EEEE------CCC--CCHHHHHHHHHhCCCcEEEEec--------CCCCCCccCCcH-----HHHHHHHHHHHh---cCC
Confidence 2222 111 13467788888887 555311 112222221111 133334444443 245
Q ss_pred CeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHH
Q 018160 261 PFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFY 299 (360)
Q Consensus 261 P~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL 299 (360)
|.+ + |.-|++.=.+-+.+..-+|.+++|.++...+-
T Consensus 208 pv~-v--GfGI~~~e~~~~~~~~gADgvVVGSaiv~~i~ 243 (267)
T 3vnd_A 208 PPL-L--GFGIAEPEQVRAAIKAGAAGAISGSAVVKIIE 243 (267)
T ss_dssp CEE-E--CSSCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred CEE-E--ECCcCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 643 3 44577777766567778999999998876654
No 27
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=40.73 E-value=17 Score=32.66 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=24.8
Q ss_pred CCcCcc-hhH-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITDD-TRI-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~Dd-~RI-~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|+++++ .++ ......|+.|.++|.+++++| |||
T Consensus 18 GTLl~~~~~~~~~~~~~l~~l~~~G~~~~iaT--GR~ 52 (275)
T 1xvi_A 18 GTLLDSHSYDWQPAAPWLTRLREANVPVILCS--SKT 52 (275)
T ss_dssp TTTSCSSCCSCCTTHHHHHHHHHTTCCEEEEC--SSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHCCCeEEEEc--CCC
Confidence 455542 222 556788999999999999998 887
No 28
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=40.73 E-value=68 Score=32.70 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=51.6
Q ss_pred hhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecccC
Q 018160 113 AVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (360)
Q Consensus 113 ~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENlRF 191 (360)
+.|+++.|+++|+. +.++|+-.+|.| +..-.|+ ..+.+..|.||...++.-.++..+.++.+++-=|++.---|+
T Consensus 12 ~~~~l~~l~~~~~~i~~v~t~~~~~~~---~~~~~~~-~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~d~iv~~~~~~i 87 (660)
T 1z7e_A 12 GCLGIEALLAAGYEISAIFTHTDNPGE---KAFYGSV-ARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHL 87 (660)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCC-----------CCH-HHHHHHHTCCEECCSCTTSHHHHHHHHHHCCSEEEEESCCSC
T ss_pred HHHHHHHHHhCCCCEEEEEeCCCCCcc---CcCccHH-HHHHHHcCCCEeccCCCCcHHHHHHHHhcCCCEEEEcCcccc
Confidence 47889999999999 567777777765 3333344 334456799998877766777778888887755555555677
Q ss_pred cccc
Q 018160 192 YKEE 195 (360)
Q Consensus 192 ~~eE 195 (360)
.+++
T Consensus 88 l~~~ 91 (660)
T 1z7e_A 88 IYDE 91 (660)
T ss_dssp CCHH
T ss_pred cCHH
Confidence 7766
No 29
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=40.43 E-value=1.1e+02 Score=26.88 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=54.4
Q ss_pred CCCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHcCCccccccccccchHHHHHHHHHHHhCCCe
Q 018160 258 PKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVN 332 (360)
Q Consensus 258 p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~IG~SlvE~d~i~~Ak~il~~a~~~g~~ 332 (360)
...-+-+|.|=..|..=|.+-+.++++-.++++.|-=|-.|-+.+|++. |.-..+.+++.+++.++..|+
T Consensus 72 ~t~~~GAVa~v~~vknPI~vAr~Vme~t~HvlLvG~GA~~fA~~~G~~~-----~~l~t~~~~~~~~~~~~~~~q 141 (162)
T 1apy_A 72 TTMDVGAVGDLRRIKNAIGVARKVLEHTTHTLLVGESATTFAQSMGFIN-----EDLSTSASQALHSDWLARNCQ 141 (162)
T ss_dssp TTCCEEEEEEECSCSCHHHHHHHHHHHBSCSEEEHHHHHHHHHHTTCCC-----CCCCCHHHHHHHHHHHHTTSC
T ss_pred CCCCeEEEEecCCCCCHHHHHHHHHhcCCCeEEEcHHHHHHHHHcCCCc-----cccCCHHHHHHHHHHHHhccC
Confidence 3444556666566888899999999999999999999999999999986 333456777777777776544
No 30
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=39.83 E-value=19 Score=31.33 Aligned_cols=35 Identities=6% Similarity=0.109 Sum_probs=26.0
Q ss_pred CCcCcchh-HhhhhHHHHHHHHCCCeEEEEecC-CCC
Q 018160 102 QNITDDTR-IRAAVPTIKHLIQNGAKVILSSHL-GRP 136 (360)
Q Consensus 102 g~I~Dd~R-I~a~lpTI~~Lle~GAkVIl~SHl-GRP 136 (360)
|.++|+.+ +..+..+|+.|.++|.+++++|-. |||
T Consensus 26 GTLl~~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~ 62 (271)
T 1vjr_A 26 GTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLG 62 (271)
T ss_dssp TTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSC
T ss_pred CcEEeCCEECcCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 55555544 345567899999999999999976 665
No 31
>1jy2_P Fibrinogen gamma-B chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_P 2a45_I*
Probab=39.04 E-value=11 Score=27.24 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=26.9
Q ss_pred ecccccccccCcchhccccccCccchhhhHHHHHHHHHhhh
Q 018160 215 NDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 255 (360)
Q Consensus 215 NDAFgtaHRahAS~~gi~~~l~ps~aG~LmekEl~~L~~~~ 255 (360)
||.||. --+.|.||+.||. .| -.-+.|+++.|..++
T Consensus 12 d~rFGs---YCPTTCGiadfL~-~Y-q~~vd~dL~~lE~~L 47 (48)
T 1jy2_P 12 DERFGS---YCPTTCGIADFLN-NY-QTSVDKDLRTLEGIL 47 (48)
T ss_dssp BTTTBC---EEECHHHHHHHHH-HH-HHHHHHHHHHHHHHH
T ss_pred cccccC---cCCccccHHHHhc-cc-ccchhhHHHHHHHHh
Confidence 788885 4688999999983 23 344778999988765
No 32
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=38.49 E-value=26 Score=31.42 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 111 RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 111 ~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
.+....|+.|.++|.+++++| |||
T Consensus 25 ~~~~~aL~~l~~~Gi~vviaT--GR~ 48 (282)
T 1rkq_A 25 PAVKNAIAAARARGVNVVLTT--GRP 48 (282)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred HHHHHHHHHHHHCCCEEEEEc--CCC
Confidence 345678999999999999998 887
No 33
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=37.62 E-value=25 Score=31.37 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=25.7
Q ss_pred CCcCcchh--H-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITDDTR--I-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~Dd~R--I-~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|.++|+.. | .+...+|+.|.++|.+++++| |||
T Consensus 30 GTLl~~~~~~i~~~~~~al~~l~~~G~~v~iaT--GR~ 65 (283)
T 3dao_A 30 GTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCS--GRQ 65 (283)
T ss_dssp TTTBSTTCSCCCHHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEc--CCC
Confidence 56665433 4 567789999999999999997 887
No 34
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=36.82 E-value=1.8e+02 Score=23.97 Aligned_cols=40 Identities=30% Similarity=0.369 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceee
Q 018160 112 AAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVK 162 (360)
Q Consensus 112 a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~f 162 (360)
....+|+.|.++|.+++++| |||. +.++.+-+.+|.+-.|
T Consensus 39 ~~~~~l~~L~~~G~~~~i~T--g~~~---------~~~~~~~~~lgl~~~~ 78 (180)
T 1k1e_A 39 RDGLGIKMLMDADIQVAVLS--GRDS---------PILRRRIADLGIKLFF 78 (180)
T ss_dssp HHHHHHHHHHHTTCEEEEEE--SCCC---------HHHHHHHHHHTCCEEE
T ss_pred chHHHHHHHHHCCCeEEEEe--CCCc---------HHHHHHHHHcCCceee
Confidence 34579999999999999999 5652 2344444556665444
No 35
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=35.91 E-value=27 Score=30.39 Aligned_cols=34 Identities=15% Similarity=0.552 Sum_probs=25.3
Q ss_pred CCcCc-c-hhH-hhhhHHHHHHHHCCCeEEEEecCCCCC
Q 018160 102 QNITD-D-TRI-RAAVPTIKHLIQNGAKVILSSHLGRPK 137 (360)
Q Consensus 102 g~I~D-d-~RI-~a~lpTI~~Lle~GAkVIl~SHlGRPk 137 (360)
|+++| + .+| .+...+|+.|.++|.++++.| |||.
T Consensus 21 GTLl~~~~~~i~~~~~~al~~l~~~G~~~~iaT--GR~~ 57 (268)
T 3r4c_A 21 GTLLSFETHKVSQSSIDALKKVHDSGIKIVIAT--GRAA 57 (268)
T ss_dssp TTTBCTTTCSCCHHHHHHHHHHHHTTCEEEEEC--SSCT
T ss_pred CCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEEc--CCCh
Confidence 56666 2 344 356679999999999999986 8884
No 36
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=35.28 E-value=77 Score=24.57 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=34.5
Q ss_pred HHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeec
Q 018160 117 IKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKA 163 (360)
Q Consensus 117 I~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv 163 (360)
+++.-+.++.+|+|.+.||.. -..+-+..+++++-...++||-.+
T Consensus 92 ~~~a~~~~~dliV~G~~~~~~--~~~~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 92 LQAARAEKADLIVMGTRGLGA--LGSLFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HHHHHHTTCSEEEEESSCTTC--CSCSSSCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHcCCCEEEECCCCCch--hhhhhhccHHHHHHhcCCCCEEEe
Confidence 567777899999998888752 233457788999988889998765
No 37
>3h35_A Uncharacterized protein ABO_0056; ubiquitous hydrocarbon degrading BA structural genomics, PSI-2, protein structure initiative; HET: MSE SRT; 2.15A {Alcanivorax borkumensis}
Probab=35.16 E-value=18 Score=32.38 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=33.8
Q ss_pred EecccCccccccCcHHHHHHHhhcCCeeeecccccccccCcchhcc-ccccCccchhhhHHHHHHHHHhhhcCCCCCeEE
Q 018160 186 LENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGV-TKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAA 264 (360)
Q Consensus 186 LENlRF~~eE~~nd~~fa~~LA~l~DvyVNDAFgtaHRahAS~~gi-~~~l~ps~aG~LmekEl~~L~~~~~~p~rP~va 264 (360)
||.+||+-||+.-..-|++-|++-.|.. .+.+|+|.+.+ -+-|.| .|-..|..+.....-|.+-
T Consensus 11 lE~~~y~~~~~~l~~m~a~LLa~s~d~~-------~~~~hp~f~~i~i~qLsp--------deA~iL~~l~~~~~~P~v~ 75 (185)
T 3h35_A 11 LEALHHPGELEGSPQNLHQLLGVSIEQS-------VPQAQTMLVERHLASLTG--------DEARLLAALSDGSAFALLT 75 (185)
T ss_dssp ----------------------CCCSSC-------CCCHHHHHHHHHTTTSCH--------HHHHHHHHHTTSCCEEEEE
T ss_pred HHHhcCcccchHHHHHHHHHHHHHhccC-------cccccHHHHHHHHHhcCh--------HHHHHHHHHhcCCCccEEE
Confidence 7999999888777788999999888863 35678888887 555544 5888888888888899999
Q ss_pred Eec
Q 018160 265 IVG 267 (360)
Q Consensus 265 IlG 267 (360)
+..
T Consensus 76 v~~ 78 (185)
T 3h35_A 76 LYS 78 (185)
T ss_dssp EES
T ss_pred EEe
Confidence 864
No 38
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=34.52 E-value=22 Score=31.26 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=21.0
Q ss_pred hH-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 109 RI-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 109 RI-~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
+| .+....|+.|.++| +|+++| |||
T Consensus 23 ~i~~~~~~al~~l~~~g-~v~iaT--GR~ 48 (239)
T 1u02_A 23 YADAGLLSLISDLKERF-DTYIVT--GRS 48 (239)
T ss_dssp CCCHHHHHHHHHHHHHS-EEEEEC--SSC
T ss_pred CCCHHHHHHHHHHhcCC-CEEEEe--CCC
Confidence 45 45678899999999 999998 887
No 39
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=34.38 E-value=44 Score=29.10 Aligned_cols=49 Identities=16% Similarity=0.292 Sum_probs=33.0
Q ss_pred CCcCcchh-HhhhhHHHHHHHHCCCeEEEEec-CCCCCCCCCCCChhhhHHHHHHHhCCc
Q 018160 102 QNITDDTR-IRAAVPTIKHLIQNGAKVILSSH-LGRPKGVTPKFSLAPLVPRLSELLGIQ 159 (360)
Q Consensus 102 g~I~Dd~R-I~a~lpTI~~Lle~GAkVIl~SH-lGRPkg~~~~~SL~pva~~Ls~lLg~~ 159 (360)
|.++|+.+ +..+...|+.|.++|.+|+++|= -||| ...+.++|.+ +|.+
T Consensus 15 GTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~--------~~~~~~~l~~-lg~~ 65 (266)
T 3pdw_A 15 GTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRT--------PKQVADKLVS-FDIP 65 (266)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSC--------HHHHHHHHHH-TTCC
T ss_pred CceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCC--------HHHHHHHHHH-cCCC
Confidence 66666544 46778899999999999999973 3343 3445555544 3544
No 40
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=31.48 E-value=27 Score=29.60 Aligned_cols=25 Identities=44% Similarity=0.385 Sum_probs=21.6
Q ss_pred HhhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 110 IRAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 110 I~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
+..+..+|+.|.++|.+|+|+| |||
T Consensus 26 ~~~~~~al~~l~~~G~~iii~T--gR~ 50 (142)
T 2obb_A 26 IPFAVETLKLLQQEKHRLILWS--VRE 50 (142)
T ss_dssp CTTHHHHHHHHHHTTCEEEECC--SCC
T ss_pred CHHHHHHHHHHHHCCCEEEEEe--CCC
Confidence 4577899999999999999987 676
No 41
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=30.75 E-value=1.2e+02 Score=27.68 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=38.8
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHH--HhCCceeecCCCCCHHHHHH-HhcCCCCcEEEEecc
Q 018160 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSE--LLGIQVVKADDCIGPEVEKL-VASLPEGGVLLLENV 189 (360)
Q Consensus 116 TI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~--lLg~~V~fv~d~~G~~v~~~-i~~l~~GeVlLLENl 189 (360)
++..|.+-||+-||+-|--|..... .+.+.+.. -+|..+-+ |+|+..+.. +..+. -+|+--||.
T Consensus 80 s~~~l~~~Ga~~VllghseRR~~~~------e~~~k~~~A~~~GL~~iv---cVge~~e~~~~~~~~-~~iIayep~ 146 (225)
T 1hg3_A 80 LPEAVKEAGAVGTLLNHSENRMILA------DLEAAIRRAEEVGLMTMV---CSNNPAVSAAVAALN-PDYVAVEPP 146 (225)
T ss_dssp CHHHHHHTTCCEEEESCGGGCCBHH------HHHHHHHHHHHHTCEEEE---EESSHHHHHHHHTTC-CSEEEECCT
T ss_pred cHHHHHHcCCCEEEECcchhcCCHH------HHHHHHHHHHHCCCEEEE---EeCCHHHHHHHhcCC-CCEEEEeCh
Confidence 5788999999999999998864321 23444333 34766665 566655443 23332 246666664
No 42
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=30.51 E-value=1e+02 Score=24.48 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCC
Q 018160 117 IKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADD 165 (360)
Q Consensus 117 I~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d 165 (360)
+++.-+.++.+|++.+.||.. -..+-+-.+++++-+...+||-.++.
T Consensus 113 ~~~a~~~~~dlIV~G~~g~~~--~~~~~~GSv~~~vl~~~~~pVlvv~~ 159 (162)
T 1mjh_A 113 VKIAEDEGVDIIIMGSHGKTN--LKEILLGSVTENVIKKSNKPVLVVKR 159 (162)
T ss_dssp HHHHHHTTCSEEEEESCCSSC--CTTCSSCHHHHHHHHHCCSCEEEECC
T ss_pred HHHHHHcCCCEEEEcCCCCCC--ccceEecchHHHHHHhCCCCEEEEeC
Confidence 467777899988888888752 23455778999999989999988753
No 43
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=30.15 E-value=93 Score=29.61 Aligned_cols=51 Identities=25% Similarity=0.279 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHh-CCceee
Q 018160 111 RAAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELL-GIQVVK 162 (360)
Q Consensus 111 ~a~lpTI~~Lle~GAk-VIl~SHlGRPkg~~~~~SL~pva~~Ls~lL-g~~V~f 162 (360)
.++-..++.|.++|+. ||+++|+|-...... ...+.-+..|.+.+ |.++-+
T Consensus 194 ~~~~~~v~~Lk~~g~D~II~l~H~G~~~d~~~-~~~e~~~~~lA~~v~giD~Ii 246 (341)
T 3gve_A 194 ESANETIPKMKAEGADVIIALAHTGIEKQAQS-SGAENAVFDLATKTKGIDAII 246 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCCCCSSCCC-TTCSSCHHHHHHHCSCCCEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCccccccc-cccchhHHHHHhcCCCCcEEE
Confidence 3334455667778998 889999998743211 12222233444333 565554
No 44
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=30.08 E-value=40 Score=29.14 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=24.4
Q ss_pred CCcCcc-hhH-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITDD-TRI-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~Dd-~RI-~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|.++|+ .+| .+...+|+.|.++|.+++++| |||
T Consensus 12 GTLl~~~~~i~~~~~~al~~l~~~G~~v~i~T--GR~ 46 (231)
T 1wr8_A 12 GTITYPNRMIHEKALEAIRRAESLGIPIMLVT--GNT 46 (231)
T ss_dssp TTTBCTTSCBCHHHHHHHHHHHHTTCCEEEEC--SSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEc--CCC
Confidence 555553 234 456778999999999999987 776
No 45
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=29.64 E-value=1.9e+02 Score=28.55 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=7.0
Q ss_pred hhHhhhhHHHHHH
Q 018160 108 TRIRAAVPTIKHL 120 (360)
Q Consensus 108 ~RI~a~lpTI~~L 120 (360)
+-+++.+.+++.+
T Consensus 360 ~~i~a~l~al~~~ 372 (494)
T 4hv4_A 360 TEVDATIKAARAG 372 (494)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3455655555543
No 46
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=29.61 E-value=1.1e+02 Score=26.73 Aligned_cols=79 Identities=23% Similarity=0.215 Sum_probs=43.1
Q ss_pred HhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCCHHHHHHHhcCCCCcEEEEecc
Q 018160 110 IRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENV 189 (360)
Q Consensus 110 I~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G~~v~~~i~~l~~GeVlLLENl 189 (360)
++.....|+...+=|++.|++ |.|.+.+....-.++.+++.|.++.. -..|=.+.+||.
T Consensus 88 ~~~~~~~i~~A~~lG~~~v~~-~~g~~~~~~~~~~~~~~~~~l~~l~~--------------------~~~gv~l~lEn~ 146 (287)
T 2x7v_A 88 VELLKKEVEICRKLGIRYLNI-HPGSHLGTGEEEGIDRIVRGLNEVLN--------------------NTEGVVILLENV 146 (287)
T ss_dssp HHHHHHHHHHHHHHTCCEEEE-CCEECTTSCHHHHHHHHHHHHHHHHT--------------------TCCSCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEE-ecCCCCCCCHHHHHHHHHHHHHHHHc--------------------ccCCCEEEEeCC
Confidence 444555677777779997654 77765332122234455555555531 125778999999
Q ss_pred cCccccccCcHH-HHHHHhhc
Q 018160 190 RFYKEEEKNDPE-FAKKLASL 209 (360)
Q Consensus 190 RF~~eE~~nd~~-fa~~LA~l 209 (360)
..+...-.+.++ +.+.+...
T Consensus 147 ~~~~~~~~~~~~~~~~l~~~~ 167 (287)
T 2x7v_A 147 SQKGGNIGYKLEQLKKIRDLV 167 (287)
T ss_dssp CCCTTEECSSHHHHHHHHHHC
T ss_pred CCCCCccCCCHHHHHHHHHhc
Confidence 654322234443 44444333
No 47
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=29.60 E-value=1e+02 Score=27.87 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=39.7
Q ss_pred CCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCC
Q 018160 84 KGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGR 135 (360)
Q Consensus 84 ~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGR 135 (360)
+-|||+|.+==++=.++++.-.|..+|++....|..|.+.|.+|||.+-=|.
T Consensus 8 ~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~ 59 (243)
T 3ek6_A 8 SYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGN 59 (243)
T ss_dssp SCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTT
T ss_pred cCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 4589999987766554333346889999999999999999999877653343
No 48
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=28.74 E-value=65 Score=26.11 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=21.7
Q ss_pred HhhhhHHHHHHHHCCCeEEEEecCCC
Q 018160 110 IRAAVPTIKHLIQNGAKVILSSHLGR 135 (360)
Q Consensus 110 I~a~lpTI~~Lle~GAkVIl~SHlGR 135 (360)
...+.++|++|.++|.++.|+|...+
T Consensus 29 ~~g~~~~l~~L~~~g~~~~i~Tn~~~ 54 (179)
T 3l8h_A 29 LPGSLQAIARLTQADWTVVLATNQSG 54 (179)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEEECTT
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCc
Confidence 34567899999999999999997654
No 49
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=27.46 E-value=1.1e+02 Score=23.56 Aligned_cols=45 Identities=9% Similarity=0.163 Sum_probs=33.9
Q ss_pred HHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeec
Q 018160 117 IKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKA 163 (360)
Q Consensus 117 I~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv 163 (360)
+++..+.++.+|++.+.||.. -..+-+..+++++-+..++||-.+
T Consensus 103 ~~~a~~~~~dliV~G~~~~~~--~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 103 VRFARKRECDLVVIGAQGTNG--DKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHTTCSEEEECSSCTTC--CSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred HHHHHHhCCCEEEEeCCCCcc--ccceeeccHHHHHHhhCCCCEEEC
Confidence 566777899999998888752 234556788999988888888653
No 50
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=27.36 E-value=1.3e+02 Score=27.94 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=26.3
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCC
Q 018160 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDC 166 (360)
Q Consensus 116 TI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~ 166 (360)
+++.+.+.++.+||+=|++-.. ...+.|++..+.++.++||.
T Consensus 61 ~~~~l~~~~~d~lIvD~Y~~~~---------~~~~~lk~~~~~~i~~iDD~ 102 (282)
T 3hbm_A 61 LINLIKEEKFELLIIDHYGISV---------DDEKLIKLETGVKILSFDDE 102 (282)
T ss_dssp HHHHHHHHTCSEEEEECTTCCH---------HHHHHHHHHHCCEEEEECSS
T ss_pred HHHHHHhCCCCEEEEECCCCCH---------HHHHHHHHhcCcEEEEEecC
Confidence 4555555577788888776431 23445555567777777775
No 51
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=26.16 E-value=1e+02 Score=27.80 Aligned_cols=66 Identities=23% Similarity=0.259 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhhhcCCCCCeEEEecCCcccc---HHHHH----HHHHHhhCeeeechHHH------HHHHHHcCCcccc
Q 018160 243 LLQKELDYLVGAVSSPKRPFAAIVGGSKVSS---KIGVI----ESLLETCDILLLGGGMI------FTFYKAQGISVGS 308 (360)
Q Consensus 243 LmekEl~~L~~~~~~p~rP~vaIlGGaKVsd---KI~vi----~~Ll~kvD~lliGG~ma------~tFL~A~G~~IG~ 308 (360)
-+..|+..--+.+..-.+|.|+|+||++.+. =.+.- +.|.+.=-.|+.||+.+ -..+.+-|..||=
T Consensus 20 ~i~~e~~~~~~~l~~~~~~~VaV~Gss~~~~~~~~~~~A~~lg~~La~~g~~lVsGGg~GiM~aa~~gAl~~gG~~iGV 98 (217)
T 1wek_A 20 RILAEFVEGFETLSELQVPLVSVFGSARFGEGHPAYEAGYRLGRALAEAGFGVVTGGGPGVMEAVNRGAYEAGGVSVGL 98 (217)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEECCSSCCTTSHHHHHHHHHHHHHHHHTCEEEECSCSHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEeCChhhHHHHHHHHHHHcCCCEEEE
Confidence 3455655545555433358999999999874 12222 33333445567776533 3455556666663
No 52
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=25.87 E-value=48 Score=31.71 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHCCCe-EEEEecCCCCC
Q 018160 112 AAVPTIKHLIQNGAK-VILSSHLGRPK 137 (360)
Q Consensus 112 a~lpTI~~Lle~GAk-VIl~SHlGRPk 137 (360)
++-..++.|.++|+. ||+++|+|-..
T Consensus 189 ~~~~~v~~lr~~g~D~II~l~H~G~~~ 215 (339)
T 3jyf_A 189 TARKYIPEMRAKGADVVVVVAHSGLSA 215 (339)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECCCCCC
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCccc
Confidence 333455666778998 88999999864
No 53
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=25.54 E-value=49 Score=28.95 Aligned_cols=33 Identities=24% Similarity=0.583 Sum_probs=20.1
Q ss_pred CCcCcch-hH-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITDDT-RI-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~Dd~-RI-~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|+++|+. +| .+...+|+.|.++|.+++++| |||
T Consensus 14 GTLl~~~~~i~~~~~~al~~l~~~G~~~~iaT--GR~ 48 (279)
T 3mpo_A 14 GTLLNEKNELAQATIDAVQAAKAQGIKVVLCT--GRP 48 (279)
T ss_dssp ----------CHHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEc--CCC
Confidence 4555432 22 345678999999999999997 887
No 54
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=25.37 E-value=55 Score=28.76 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 111 RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 111 ~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
.+...+|+.|.++|.+++++| |||
T Consensus 26 ~~~~~al~~l~~~G~~~~iaT--GR~ 49 (290)
T 3dnp_A 26 QATKDAIEYVKKKGIYVTLVT--NRH 49 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEBC--SSC
T ss_pred HHHHHHHHHHHHCCCEEEEEC--CCC
Confidence 356678999999999999987 887
No 55
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=25.24 E-value=1.1e+02 Score=23.62 Aligned_cols=43 Identities=7% Similarity=0.073 Sum_probs=32.3
Q ss_pred HHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeec
Q 018160 119 HLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKA 163 (360)
Q Consensus 119 ~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv 163 (360)
+..++++.+|++.+.||.. -..+-+..+++++-+..++||-.+
T Consensus 103 ~a~~~~~dliV~G~~~~~~--~~~~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 103 AKQHPEIDLIVLGATGTNS--PHRVAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp HHHSTTCCEEEEESCCSSC--TTTCSSCHHHHHHHHHCSSEEEEE
T ss_pred HHhhcCCCEEEECCCCCCC--cceEEEcchHHHHhccCCCCEEEe
Confidence 5556899988888888752 234456788999988889988765
No 56
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=25.19 E-value=1.2e+02 Score=28.45 Aligned_cols=47 Identities=9% Similarity=0.096 Sum_probs=38.0
Q ss_pred CCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEe
Q 018160 84 KGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131 (360)
Q Consensus 84 ~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~S 131 (360)
+-|||+|.+==++=-+++ .-.|..+|++....|+.+.++|.+|||++
T Consensus 49 ~~krIViKlGGs~L~~~~-~~ld~~~i~~la~~I~~l~~~G~~vviV~ 95 (281)
T 3nwy_A 49 GYSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVI 95 (281)
T ss_dssp CCSEEEEEECGGGGGTTS-SSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCcEEEEEEchhhccCCC-CCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 468999998776654433 33688899999999999999999988777
No 57
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=25.11 E-value=54 Score=28.41 Aligned_cols=33 Identities=21% Similarity=0.521 Sum_probs=24.0
Q ss_pred CCcCcch-hH-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITDDT-RI-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~Dd~-RI-~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|.++|+. .| .+...+|+.+.++|.+++++| |||
T Consensus 12 GTLl~~~~~i~~~~~~al~~l~~~G~~~~~aT--GR~ 46 (258)
T 2pq0_A 12 GTLLDEQKQLPLSTIEAVRRLKQSGVYVAIAT--GRA 46 (258)
T ss_dssp TTTBCTTSCCCHHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred CCCcCCCCccCHHHHHHHHHHHHCCCEEEEEC--CCC
Confidence 5666543 33 345668999999999998875 887
No 58
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}
Probab=25.10 E-value=42 Score=28.47 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=31.3
Q ss_pred CCcCcch-----hHhhhhHHHHHHHHCCCeEEEEecC-CCCCCCCCCCChhhhHHHHHHHhCCc
Q 018160 102 QNITDDT-----RIRAAVPTIKHLIQNGAKVILSSHL-GRPKGVTPKFSLAPLVPRLSELLGIQ 159 (360)
Q Consensus 102 g~I~Dd~-----RI~a~lpTI~~Lle~GAkVIl~SHl-GRPkg~~~~~SL~pva~~Ls~lLg~~ 159 (360)
|.++|+. -+.....+|+.+.++|.+++++++. ||| ...+.+++.+ +|.+
T Consensus 21 GTLl~s~~~~~~~~~~~~~a~~~l~~~G~~~~~~t~~~gr~--------~~~~~~~l~~-~g~~ 75 (271)
T 2x4d_A 21 GVLYDSGAGGGTAIAGSVEAVARLKRSRLKVRFCTNESAAS--------RAELVGQLQR-LGFD 75 (271)
T ss_dssp TTTEECCTTTCEECTTHHHHHHHHHHSSSEEEEECCCCSSC--------HHHHHHHHHH-TTCC
T ss_pred CeEEecCCCCCccCcCHHHHHHHHHHCCCcEEEEECCCCCC--------HHHHHHHHHH-CCCC
Confidence 5666632 3345566799999999999888865 443 3445556654 3543
No 59
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=24.66 E-value=2.7e+02 Score=26.41 Aligned_cols=61 Identities=21% Similarity=0.174 Sum_probs=38.3
Q ss_pred hhHHHHHHHHCCCeE-EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCCCC-----HHHHHHHhcCCC
Q 018160 113 AVPTIKHLIQNGAKV-ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIG-----PEVEKLVASLPE 180 (360)
Q Consensus 113 ~lpTI~~Lle~GAkV-Il~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~~G-----~~v~~~i~~l~~ 180 (360)
+.+.++.|+++|..| .++|+-.||.+. .|+. .+.+..|.||...+..-. +++.+.++++++
T Consensus 34 a~~~L~~L~~~~~~i~~Vvt~pd~~~~~------~~v~-~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (329)
T 2bw0_A 34 GQEVYCHLRKEGHEVVGVFTVPDKDGKA------DPLG-LEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGA 100 (329)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCCCSSCC------CHHH-HHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCeEEEEEeCCCcCCCC------CHHH-HHHHHcCCCEEecCcccccccccHHHHHHHHhcCC
Confidence 467899999999884 567776776321 2454 566777999887654321 344444444444
No 60
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14
Probab=24.58 E-value=92 Score=26.85 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=38.6
Q ss_pred CCcCcch-hHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCce
Q 018160 102 QNITDDT-RIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQV 160 (360)
Q Consensus 102 g~I~Dd~-RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V 160 (360)
|.+.|.. .|..+...|+.|.++|.++++++..+. .+....++.|.+.+|.++
T Consensus 14 GTL~~~~~~~~~~~~~l~~l~~~g~~~~~~t~~~~-------~~~~~~~~~l~~~~g~~~ 66 (264)
T 1yv9_A 14 GTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTT-------KSPETVAQRLANEFDIHV 66 (264)
T ss_dssp TTTEETTEECHHHHHHHHHHHHTTCCEEEEECCCS-------SCHHHHHHHHHHHSCCCC
T ss_pred CeEEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCC-------CCHHHHHHHHHHhcCCCC
Confidence 6666643 466677789999999999998886542 356778888888777764
No 61
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=24.36 E-value=1.3e+02 Score=24.06 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=36.3
Q ss_pred HHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCCC
Q 018160 117 IKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDC 166 (360)
Q Consensus 117 I~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d~ 166 (360)
+++..+.++.+|++.+.||.. -..+-+..+++++-+...+||-.++.-
T Consensus 110 ~~~a~~~~~DlIV~G~~g~~~--~~~~~~Gsv~~~vl~~~~~PVlvv~~~ 157 (170)
T 2dum_A 110 VKVAEEENVSLIILPSRGKLS--LSHEFLGSTVMRVLRKTKKPVLIIKEV 157 (170)
T ss_dssp HHHHHHTTCSEEEEESCCCCC----TTCCCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHHcCCCEEEECCCCCCc--cccceechHHHHHHHhCCCCEEEEccC
Confidence 567778899988888888752 233456789999999999999998643
No 62
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=24.24 E-value=66 Score=28.64 Aligned_cols=33 Identities=15% Similarity=0.412 Sum_probs=23.7
Q ss_pred CCcCcchh-H-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITDDTR-I-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~Dd~R-I-~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|.++|+.+ | .+....|+.|.++|.+++++| |||
T Consensus 13 GTLl~~~~~i~~~~~~al~~l~~~G~~~~iaT--GR~ 47 (288)
T 1nrw_A 13 GTLLNSKHQVSLENENALRQAQRDGIEVVVST--GRA 47 (288)
T ss_dssp CCCSCTTSCCCHHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred CCCCCCCCccCHHHHHHHHHHHHCCCEEEEEe--CCC
Confidence 56665433 2 345567899999999999887 887
No 63
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=24.22 E-value=51 Score=32.90 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=22.8
Q ss_pred hHhhhhHHHHHHHHCCCe-EEEEecCCCC
Q 018160 109 RIRAAVPTIKHLIQNGAK-VILSSHLGRP 136 (360)
Q Consensus 109 RI~a~lpTI~~Lle~GAk-VIl~SHlGRP 136 (360)
-+.++-..++.|.++|+. ||+++|+|-+
T Consensus 171 ~v~~~~~~v~~Lr~~g~D~II~LsH~G~~ 199 (530)
T 4h1s_A 171 EITALQPEVDKLKTLNVNKIIALGHSGFE 199 (530)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEESCHH
T ss_pred HHHHHHHHHhhhhhcCCCEEEEeccCCch
Confidence 466667778888889998 9999999954
No 64
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=24.21 E-value=72 Score=30.10 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=29.1
Q ss_pred CCCCeEEEecCCccccHHHHHHHHHH-hhCeeeechHHH
Q 018160 258 PKRPFAAIVGGSKVSSKIGVIESLLE-TCDILLLGGGMI 295 (360)
Q Consensus 258 p~rP~vaIlGGaKVsdKI~vi~~Ll~-kvD~lliGG~ma 295 (360)
...|+|++.||....+=+..++..++ -++.+++|..+-
T Consensus 220 ~~~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~vGRaI~ 258 (304)
T 1to3_A 220 INMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVW 258 (304)
T ss_dssp CCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcCCeEEEEehHHh
Confidence 56799999999976666666766666 588888887654
No 65
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=24.14 E-value=85 Score=27.79 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 112 AAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 112 a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
+...+|+.|.++|.+++++| |||
T Consensus 42 ~~~~al~~l~~~G~~v~iaT--GR~ 64 (285)
T 3pgv_A 42 YAKETLKLLTARGINFVFAT--GRH 64 (285)
T ss_dssp HHHHHHHHHHTTTCEEEEEC--SSC
T ss_pred HHHHHHHHHHHCCCEEEEEc--CCC
Confidence 45668999999999999986 887
No 66
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=23.97 E-value=68 Score=28.06 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=32.2
Q ss_pred HhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCcee
Q 018160 110 IRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVV 161 (360)
Q Consensus 110 I~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~ 161 (360)
+..+..+|+.|.++|.+++++| ||+ ..+...++++|+ .+|.++.
T Consensus 19 ~~~~~~~l~~l~~~g~~~~~~T--~r~-----~~~~~~~~~~l~-~lg~~~~ 62 (263)
T 1zjj_A 19 IPGVRELIEFLKERGIPFAFLT--NNS-----TKTPEMYREKLL-KMGIDVS 62 (263)
T ss_dssp CTTHHHHHHHHHHHTCCEEEEE--SCC-----SSCHHHHHHHHH-TTTCCCC
T ss_pred CccHHHHHHHHHHCCCeEEEEe--CCC-----CCCHHHHHHHHH-HCCCCCC
Confidence 4557789999999999999998 554 235667777776 4576543
No 67
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=23.71 E-value=1.3e+02 Score=27.53 Aligned_cols=40 Identities=8% Similarity=0.130 Sum_probs=30.7
Q ss_pred CCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHH
Q 018160 259 KRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (360)
Q Consensus 259 ~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (360)
..|++.|+.+..+.+ .++.+++.++.++-..|=|+..+..
T Consensus 20 ~~~~~lIv~ng~~~~---~~~~~~~~~~~~i~aDgGa~~l~~~ 59 (247)
T 3s4y_A 20 NLKYCLVILNQPLDN---YFRHLWNKALLRACADGGANRLYDI 59 (247)
T ss_dssp CCCEEEEECSSCCCT---THHHHHHHCSCEEEETTHHHHHHHH
T ss_pred CCCEEEEEECCcchH---HHHHHHhhCCEEEEEchHHHHHHHh
Confidence 356777777777775 7889999999988777777777774
No 68
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=23.28 E-value=41 Score=29.48 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=23.8
Q ss_pred CCcCc-chhHhhhhHHHHHHHHCCCeEEEEe
Q 018160 102 QNITD-DTRIRAAVPTIKHLIQNGAKVILSS 131 (360)
Q Consensus 102 g~I~D-d~RI~a~lpTI~~Lle~GAkVIl~S 131 (360)
|.++| +..|..+...|+.|.++|.+|+++|
T Consensus 14 GTLl~~~~~i~~~~eal~~l~~~G~~vvl~T 44 (264)
T 3epr_A 14 GTIYKGKSRIPAGERFIERLQEKGIPYMLVT 44 (264)
T ss_dssp TTTEETTEECHHHHHHHHHHHHHTCCEEEEE
T ss_pred CceEeCCEECcCHHHHHHHHHHCCCeEEEEe
Confidence 44443 4456788889999999999999998
No 69
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=22.83 E-value=44 Score=30.58 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=36.6
Q ss_pred HHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecCC
Q 018160 115 PTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADD 165 (360)
Q Consensus 115 pTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~fv~d 165 (360)
.|..+..++|-.+|.+.|.. .+.+-++.++++|++.++.+|.|++.
T Consensus 198 h~~~~a~e~gi~~i~~GH~~-----tE~~~~~~l~~~L~~~~~~~v~~~~~ 243 (247)
T 1nmo_A 198 QTIHSAREQGLHFYAAGHHA-----TERGGIRALSEWLNENTDLDVTFIDI 243 (247)
T ss_dssp HHHHHHHHTTCEEEECCHHH-----HTSHHHHHHHHHHHHHSSCEEEECCC
T ss_pred HHHHHHHHCCCeEEEcCCHH-----HHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 56667777888888888874 35567889999999999999999864
No 70
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Probab=22.68 E-value=50 Score=28.86 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=24.6
Q ss_pred CCcCcchhH-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITDDTRI-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~Dd~RI-~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|+++|+..| .+...+|+.|.++|.++++.| |||
T Consensus 9 GTLl~~~~i~~~~~~al~~l~~~Gi~v~iaT--GR~ 42 (259)
T 3zx4_A 9 GTLLDERGELGPAREALERLRALGVPVVPVT--AKT 42 (259)
T ss_dssp CCCSCSSSSCSTTHHHHHHHHHTTCCEEEBC--SSC
T ss_pred CCCcCCCcCCHHHHHHHHHHHHCCCeEEEEe--CCC
Confidence 666665443 244568999999999999985 887
No 71
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=22.48 E-value=1.6e+02 Score=26.41 Aligned_cols=50 Identities=26% Similarity=0.233 Sum_probs=37.1
Q ss_pred CCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEec
Q 018160 83 LKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSH 132 (360)
Q Consensus 83 l~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SH 132 (360)
.+-|||++.+==++=.++++.-.|..+|++....|..+.+.|.+|||.+-
T Consensus 5 ~~~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~g 54 (240)
T 4a7w_A 5 IKNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIG 54 (240)
T ss_dssp -CCCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 34588998887666443222236889999999999999999999776643
No 72
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=22.33 E-value=52 Score=30.05 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=30.1
Q ss_pred CCcCcc--hhHh-hhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhH--HHHH
Q 018160 102 QNITDD--TRIR-AAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLV--PRLS 153 (360)
Q Consensus 102 g~I~Dd--~RI~-a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva--~~Ls 153 (360)
|+++++ .+|. .....|+.|.++|.+++++| ||| ..++.++. +.|.
T Consensus 36 GTLl~~~~~~is~~~~~al~~l~~~Gi~v~iaT--GR~-----~~~~~~~~~~~~l~ 85 (301)
T 2b30_A 36 GTLFVDKDIKVPSENIDAIKEAIEKGYMVSICT--GRS-----KVGILSAFGEENLK 85 (301)
T ss_dssp TTTBCCTTTCSCHHHHHHHHHHHHHTCEEEEEC--SSC-----HHHHHHHHCHHHHH
T ss_pred CCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEc--CCC-----HHHHHHHhhHHhhc
Confidence 555554 3342 45678999999999999995 886 23455555 5553
No 73
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=21.64 E-value=82 Score=27.45 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 111 RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 111 ~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
.+...+|+.|.++|.+++++| |||
T Consensus 25 ~~~~~al~~l~~~G~~~~iaT--GR~ 48 (279)
T 4dw8_A 25 SRNRETLIRIQEQGIRLVLAS--GRP 48 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred HHHHHHHHHHHHCCCEEEEEc--CCC
Confidence 456778999999999999998 786
No 74
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=21.07 E-value=1e+02 Score=30.84 Aligned_cols=65 Identities=31% Similarity=0.475 Sum_probs=45.5
Q ss_pred CCCCCeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCcee
Q 018160 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVV 161 (360)
Q Consensus 82 dl~gKrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~ 161 (360)
+++||||+| +=.-.+++ +||.|=-.++.-|+.|.++|++|.+- ||.. .+...+.++..+.
T Consensus 330 ~l~g~~V~v---lGlafK~~---tdD~ReSpa~~ii~~L~~~Ga~V~~~---------DP~~-----~~~~~~~~~~~~~ 389 (444)
T 3vtf_A 330 GLRGRHVGV---LGLAFKPN---TDDVRESRGVEVARLLLERGARVYVH---------DPMA-----MEKARAVLGDSVT 389 (444)
T ss_dssp CCTTCEEEE---ECCSSSSS---CCCCTTCHHHHHHHHHHHTTCEEEEE---------CSST-----HHHHHHHHGGGSE
T ss_pred ccCCCEEEE---EeeecCCC---CCccccCcHHHHHHHHHHCCCEEEEE---------CCCC-----ChHHHHhcCCCce
Confidence 589999986 22333432 79999999999999999999998764 2221 1334455666777
Q ss_pred ecCCC
Q 018160 162 KADDC 166 (360)
Q Consensus 162 fv~d~ 166 (360)
+++|.
T Consensus 390 ~~~~~ 394 (444)
T 3vtf_A 390 YVEDP 394 (444)
T ss_dssp ECSCH
T ss_pred ecCCH
Confidence 77653
No 75
>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*
Probab=20.90 E-value=79 Score=27.88 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=22.8
Q ss_pred CCcCcc-hhH-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 018160 102 QNITDD-TRI-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (360)
Q Consensus 102 g~I~Dd-~RI-~a~lpTI~~Lle~GAkVIl~SHlGRP 136 (360)
|.++++ .+| ......|+.|.++ .+++++| |||
T Consensus 22 GTLl~~~~~is~~~~~al~~l~~~-i~v~iaT--GR~ 55 (262)
T 2fue_A 22 GTLTPARQKIDPEVAAFLQKLRSR-VQIGVVG--GSD 55 (262)
T ss_dssp TTTBSTTSCCCHHHHHHHHHHTTT-SEEEEEC--SSC
T ss_pred cCCCCCCCcCCHHHHHHHHHHHhC-CEEEEEc--CCC
Confidence 444433 334 4567788999888 8899999 996
No 76
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=20.81 E-value=1e+02 Score=29.54 Aligned_cols=47 Identities=28% Similarity=0.249 Sum_probs=37.8
Q ss_pred hhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCcee
Q 018160 108 TRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVV 161 (360)
Q Consensus 108 ~RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V~ 161 (360)
.-|..+...|++|.++|-+++++|-.+ ..|-+..+++|++.||.++.
T Consensus 29 ~~~p~a~~~l~~l~~~g~~~~~vTNn~-------~~~~~~~~~~l~~~lgi~~~ 75 (352)
T 3kc2_A 29 KPIAGASDALKLLNRNKIPYILLTNGG-------GFSERARTEFISSKLDVDVS 75 (352)
T ss_dssp EECTTHHHHHHHHHHTTCCEEEECSCC-------SSCHHHHHHHHHHHHTSCCC
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCC-------CCCchHHHHHHHHhcCCCCC
Confidence 345667779999999999999987543 34677899999988999865
No 77
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=20.79 E-value=57 Score=28.58 Aligned_cols=48 Identities=29% Similarity=0.558 Sum_probs=32.9
Q ss_pred HHHHHHhcCCCCc-EEEEecccCccccccCcHHHHHHHhhc----CC--eeeecccccc
Q 018160 170 EVEKLVASLPEGG-VLLLENVRFYKEEEKNDPEFAKKLASL----AD--LYVNDAFGTA 221 (360)
Q Consensus 170 ~v~~~i~~l~~Ge-VlLLENlRF~~eE~~nd~~fa~~LA~l----~D--vyVNDAFgta 221 (360)
+.+...+.+++++ +++|+= .|++-..++||+.|... .| ++|.-++|-+
T Consensus 54 E~~~il~~i~~~~~vI~LD~----~Gk~~sS~~fA~~l~~~~~~G~~i~FvIGGa~Gl~ 108 (163)
T 1o6d_A 54 ETEDLTNRILPGSFVMVMDK----RGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLN 108 (163)
T ss_dssp HHHHHHTTCCTTCEEEEEEE----EEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCC
T ss_pred HHHHHHHhcCCCCEEEEEcC----CCCcCCHHHHHHHHHHHHhcCCeEEEEEECCCCCC
Confidence 4455677888888 788872 34555678999999976 33 5566666654
No 78
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=20.47 E-value=74 Score=27.54 Aligned_cols=51 Identities=29% Similarity=0.378 Sum_probs=31.9
Q ss_pred CCcCcch-hHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCce
Q 018160 102 QNITDDT-RIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQV 160 (360)
Q Consensus 102 g~I~Dd~-RI~a~lpTI~~Lle~GAkVIl~SHlGRPkg~~~~~SL~pva~~Ls~lLg~~V 160 (360)
|.++|+. -+..+...|+.|.++|.+|+++| ||+ .-+...+.++|.+ +|.++
T Consensus 17 GTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~T--gr~-----~r~~~~~~~~l~~-lg~~~ 68 (268)
T 3qgm_A 17 GVIGKSVTPIPEGVEGVKKLKELGKKIIFVS--NNS-----TRSRRILLERLRS-FGLEV 68 (268)
T ss_dssp TTTEETTEECHHHHHHHHHHHHTTCEEEEEE--CCS-----SSCHHHHHHHHHH-TTCCC
T ss_pred CcEECCCEeCcCHHHHHHHHHHcCCeEEEEe--CcC-----CCCHHHHHHHHHH-CCCCC
Confidence 4444333 24567889999999999999997 443 1234455566643 45543
No 79
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=20.41 E-value=1.4e+02 Score=22.42 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=24.2
Q ss_pred CCcCcchhH-hhhhHHHHHHHHCCCeEEEEecCC
Q 018160 102 QNITDDTRI-RAAVPTIKHLIQNGAKVILSSHLG 134 (360)
Q Consensus 102 g~I~Dd~RI-~a~lpTI~~Lle~GAkVIl~SHlG 134 (360)
|.+.+..++ ....++|++|.++|.++.++|...
T Consensus 11 gtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~~~ 44 (137)
T 2pr7_A 11 GVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDP 44 (137)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred ceecCCCccCccHHHHHHHHHHCCCEEEEEeCCC
Confidence 455454443 456788999999999999999643
No 80
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=20.40 E-value=1.7e+02 Score=25.67 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=34.8
Q ss_pred CeEEEEeccCCCCCCCCCcCcchhHhhhhHHHHHHHHCCCeEEEEe
Q 018160 86 KKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131 (360)
Q Consensus 86 KrVlvRvD~NVPl~~~g~I~Dd~RI~a~lpTI~~Lle~GAkVIl~S 131 (360)
|+++|.+-=++=-++++.-.|..+++.....|..|.+.|.+|||.+
T Consensus 8 ~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~ 53 (239)
T 1ybd_A 8 KRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVV 53 (239)
T ss_dssp SEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7888888777644322223577899999999999999999977654
No 81
>1ig0_A Thiamin pyrophosphokinase; protein-substrate complex, compound active site, alpha-beta- alpha, beta sandwich, transferase; HET: VIB; 1.80A {Saccharomyces cerevisiae} SCOP: b.82.6.1 c.100.1.1
Probab=20.25 E-value=2.4e+02 Score=26.79 Aligned_cols=77 Identities=9% Similarity=0.131 Sum_probs=43.8
Q ss_pred CCCeEEEecCCccccHHHHHHHHHHhhCeeeechHHHHHHHHHc---CC---ccccccc--cccchHHHHHHHHHHHhCC
Q 018160 259 KRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQ---GI---SVGSSLV--EEDKLDLATTLLAKAKAKG 330 (360)
Q Consensus 259 ~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~---G~---~IG~Slv--E~d~i~~Ak~il~~a~~~g 330 (360)
..+.+.|+.|..+.+....+..+++.++.++-.-|=|+..+... |. .+-..++ +-|.+ -.+.++..+++|
T Consensus 36 ~~~~~lIvlng~~~~~~~~~~~~~~~a~~~I~aDGGa~~l~~~~~~~g~~~~~~~Pd~IvGDfDSi--~~e~~~~y~~~g 113 (319)
T 1ig0_A 36 DENSTLLILNQKIDIPRPLFYKIWKLHDLKVCADGAANRLYDYLDDDETLRIKYLPNYIIGDLDSL--SEKVYKYYRKNK 113 (319)
T ss_dssp TSEEEEEECSSCCCSCHHHHHHHHHHCSEEEEETTHHHHHHHHSCSCHHHHTTSCCSEEEECCTTS--CHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCcccHHHHHHHHhcCCEEEEEccHHHHHHHhhhcccccccccccCEEEcCCcCC--CHHHHHHHHhcC
Confidence 34556666555665333677888888988777777777777762 30 0111222 12222 133444556678
Q ss_pred CeEEccc
Q 018160 331 VNLLLPS 337 (360)
Q Consensus 331 ~~I~LPv 337 (360)
+.++.|.
T Consensus 114 ~~i~~~~ 120 (319)
T 1ig0_A 114 VTIIKQT 120 (319)
T ss_dssp CEEEECC
T ss_pred ceEEeCC
Confidence 8777664
No 82
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=20.11 E-value=1.5e+02 Score=24.66 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=23.1
Q ss_pred CCCCeEEEecCCc----cccHHHHHHHHHHhhCeeeechH
Q 018160 258 PKRPFAAIVGGSK----VSSKIGVIESLLETCDILLLGGG 293 (360)
Q Consensus 258 p~rP~vaIlGGaK----VsdKI~vi~~Ll~kvD~lliGG~ 293 (360)
|.++.++|+|.-- -.+....+...++.+|.+++.|.
T Consensus 62 ~~~riivvf~~g~~s~r~k~~~~~~~~~~~~aD~vi~~~~ 101 (163)
T 3mvn_A 62 GQQRILAVLEPRSNTMKMGVHKHELATSLQDADSVFIYQP 101 (163)
T ss_dssp TTSCEEEEECCC---------CHHHHHHHTTCSEEEEECC
T ss_pred CCCcEEEEECCCCcchhhHHHHHHHHHHHhcCCEEEEECC
Confidence 5678888886432 22334666666778999999873
Done!