Query 018164
Match_columns 360
No_of_seqs 219 out of 2937
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 1.4E-60 3.1E-65 429.8 31.0 351 2-360 138-493 (493)
2 TIGR01130 ER_PDI_fam protein d 100.0 1.3E-43 2.7E-48 336.1 35.9 331 2-341 115-458 (462)
3 PTZ00102 disulphide isomerase; 100.0 5.6E-42 1.2E-46 325.7 35.1 319 2-341 144-469 (477)
4 KOG0191 Thioredoxin/protein di 99.9 1.6E-24 3.5E-29 199.0 18.5 218 106-340 33-255 (383)
5 PF13848 Thioredoxin_6: Thiore 99.9 4.7E-24 1E-28 176.8 19.0 178 24-209 1-184 (184)
6 KOG0191 Thioredoxin/protein di 99.9 1.7E-20 3.7E-25 172.4 19.3 292 11-314 42-356 (383)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 4E-21 8.7E-26 143.7 11.2 101 229-333 8-113 (113)
8 TIGR02187 GlrX_arch Glutaredox 99.8 2.3E-19 5.1E-24 151.6 15.6 185 122-335 22-214 (215)
9 KOG0910 Thioredoxin-like prote 99.8 2.7E-20 5.8E-25 141.4 8.2 104 231-338 44-149 (150)
10 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 8.8E-20 1.9E-24 136.4 10.6 103 231-333 1-104 (104)
11 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.1E-19 2.3E-24 135.8 8.5 100 231-333 2-104 (104)
12 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.8E-19 4E-24 133.7 9.4 97 231-332 2-100 (101)
13 PF01216 Calsequestrin: Calseq 99.8 1E-17 2.2E-22 142.9 21.1 210 3-217 151-374 (383)
14 PF00085 Thioredoxin: Thioredo 99.8 3E-19 6.6E-24 133.2 10.5 101 232-336 1-103 (103)
15 cd02996 PDI_a_ERp44 PDIa famil 99.8 3.4E-19 7.5E-24 133.9 9.0 101 231-333 2-108 (108)
16 TIGR01130 ER_PDI_fam protein d 99.8 1E-16 2.3E-21 152.0 28.1 306 4-342 6-332 (462)
17 cd03065 PDI_b_Calsequestrin_N 99.8 5E-19 1.1E-23 133.1 9.2 106 229-337 8-119 (120)
18 cd03002 PDI_a_MPD1_like PDI fa 99.8 9.9E-19 2.1E-23 131.8 9.2 101 232-334 2-109 (109)
19 KOG0190 Protein disulfide isom 99.8 1.6E-16 3.4E-21 144.8 23.8 305 5-342 31-351 (493)
20 cd03007 PDI_a_ERp29_N PDIa fam 99.8 2E-18 4.4E-23 128.1 7.7 99 231-336 2-115 (116)
21 cd02994 PDI_a_TMX PDIa family, 99.8 6.7E-18 1.5E-22 125.3 10.0 98 231-335 2-101 (101)
22 PTZ00102 disulphide isomerase; 99.7 2.4E-15 5.3E-20 143.2 29.2 287 5-341 38-342 (477)
23 cd02993 PDI_a_APS_reductase PD 99.7 8E-18 1.7E-22 126.5 9.6 101 231-333 2-109 (109)
24 cd03001 PDI_a_P5 PDIa family, 99.7 9.1E-18 2E-22 125.2 9.1 99 232-333 2-102 (103)
25 PRK09381 trxA thioredoxin; Pro 99.7 3.6E-17 7.8E-22 123.2 11.1 104 230-337 3-108 (109)
26 cd03005 PDI_a_ERp46 PDIa famil 99.7 2E-17 4.4E-22 123.0 9.4 98 232-333 2-102 (102)
27 COG3118 Thioredoxin domain-con 99.7 2.1E-17 4.5E-22 139.3 9.1 106 230-339 23-132 (304)
28 PTZ00443 Thioredoxin domain-co 99.7 2.6E-17 5.6E-22 137.7 9.3 108 229-340 29-142 (224)
29 cd02998 PDI_a_ERp38 PDIa famil 99.7 4.8E-17 1E-21 121.7 9.9 101 232-333 2-105 (105)
30 cd02956 ybbN ybbN protein fami 99.7 3.3E-17 7.2E-22 120.4 8.8 92 239-334 2-96 (96)
31 cd02963 TRX_DnaJ TRX domain, D 99.7 2.3E-17 5.1E-22 124.2 8.1 98 235-335 9-110 (111)
32 TIGR01126 pdi_dom protein disu 99.7 3.6E-17 7.8E-22 121.7 8.8 100 235-337 1-102 (102)
33 cd02999 PDI_a_ERp44_like PDIa 99.7 7.2E-17 1.6E-21 118.9 8.4 82 246-333 16-100 (100)
34 PHA02278 thioredoxin-like prot 99.7 9.7E-17 2.1E-21 118.0 7.5 90 238-332 5-100 (103)
35 cd02954 DIM1 Dim1 family; Dim1 99.7 1E-16 2.2E-21 118.7 6.1 81 238-322 3-86 (114)
36 cd02992 PDI_a_QSOX PDIa family 99.7 4.6E-16 9.9E-21 117.5 9.8 102 231-332 2-111 (114)
37 cd02997 PDI_a_PDIR PDIa family 99.7 3.9E-16 8.5E-21 116.5 9.4 99 232-333 2-104 (104)
38 PRK10996 thioredoxin 2; Provis 99.7 5.5E-16 1.2E-20 121.4 9.8 103 230-337 35-139 (139)
39 PLN02309 5'-adenylylsulfate re 99.7 4.2E-16 9.1E-21 143.1 10.4 106 229-336 344-456 (457)
40 TIGR00424 APS_reduc 5'-adenyly 99.7 5.7E-16 1.2E-20 142.2 11.2 105 229-335 350-461 (463)
41 cd02948 TRX_NDPK TRX domain, T 99.6 1.1E-15 2.4E-20 113.3 8.5 95 236-335 6-101 (102)
42 TIGR01068 thioredoxin thioredo 99.6 1.2E-15 2.6E-20 113.2 8.6 98 236-337 2-101 (101)
43 cd02985 TRX_CDSP32 TRX family, 99.6 1.2E-15 2.6E-20 113.3 8.0 92 238-335 4-101 (103)
44 KOG0912 Thiol-disulfide isomer 99.6 1.7E-14 3.6E-19 120.9 15.4 211 3-222 113-330 (375)
45 cd02962 TMX2 TMX2 family; comp 99.6 1.8E-15 4E-20 119.0 8.9 99 220-322 19-126 (152)
46 cd03000 PDI_a_TMX3 PDIa family 99.6 4.1E-15 9E-20 110.8 9.8 94 238-336 7-103 (104)
47 cd02957 Phd_like Phosducin (Ph 99.6 2.5E-15 5.5E-20 113.6 8.5 88 230-322 4-94 (113)
48 cd03066 PDI_b_Calsequestrin_mi 99.6 1.2E-14 2.6E-19 107.5 11.2 95 2-100 4-101 (102)
49 cd02981 PDI_b_family Protein D 99.6 1.2E-14 2.5E-19 107.0 11.0 94 2-99 3-97 (97)
50 cd02965 HyaE HyaE family; HyaE 99.6 5.9E-15 1.3E-19 108.4 9.1 94 232-330 12-109 (111)
51 PF01216 Calsequestrin: Calseq 99.6 2.5E-12 5.4E-17 110.3 26.1 305 5-342 40-373 (383)
52 KOG4277 Uncharacterized conser 99.6 1E-15 2.2E-20 127.8 5.4 92 246-340 41-135 (468)
53 cd02961 PDI_a_family Protein D 99.6 4.4E-15 9.6E-20 109.9 7.7 98 234-333 2-101 (101)
54 cd03069 PDI_b_ERp57 PDIb famil 99.6 1.7E-14 3.6E-19 107.0 10.7 94 2-100 4-104 (104)
55 cd02989 Phd_like_TxnDC9 Phosdu 99.6 9.6E-15 2.1E-19 110.0 8.7 98 230-333 4-112 (113)
56 cd02949 TRX_NTR TRX domain, no 99.5 2.1E-14 4.6E-19 105.5 8.1 89 242-334 7-97 (97)
57 cd03072 PDI_b'_ERp44 PDIb' fam 99.5 5E-14 1.1E-18 105.3 9.4 107 104-214 1-111 (111)
58 PLN00410 U5 snRNP protein, DIM 99.5 4.2E-14 9.1E-19 108.9 8.9 101 237-340 11-123 (142)
59 cd02953 DsbDgamma DsbD gamma f 99.5 2.1E-14 4.5E-19 107.1 7.0 91 239-334 3-104 (104)
60 cd02950 TxlA TRX-like protein 99.5 7.8E-14 1.7E-18 109.5 10.5 97 239-340 12-113 (142)
61 cd02987 Phd_like_Phd Phosducin 99.5 7.1E-14 1.5E-18 113.4 9.9 105 229-336 61-174 (175)
62 cd02975 PfPDO_like_N Pyrococcu 99.5 8.6E-14 1.9E-18 104.9 9.5 91 246-339 20-112 (113)
63 cd03003 PDI_a_ERdj5_N PDIa fam 99.5 1.2E-13 2.5E-18 102.4 9.8 100 102-207 1-101 (101)
64 cd02984 TRX_PICOT TRX domain, 99.5 6.9E-14 1.5E-18 102.9 7.9 91 238-333 3-96 (97)
65 KOG0907 Thioredoxin [Posttrans 99.5 7.7E-14 1.7E-18 102.6 7.7 84 246-335 19-104 (106)
66 KOG0912 Thiol-disulfide isomer 99.5 3.5E-12 7.7E-17 107.2 18.4 289 5-337 2-319 (375)
67 cd03068 PDI_b_ERp72 PDIb famil 99.5 2.4E-13 5.3E-18 100.9 10.1 94 2-99 4-107 (107)
68 cd02988 Phd_like_VIAF Phosduci 99.5 9.4E-14 2E-18 114.1 8.5 102 228-335 80-190 (192)
69 cd03006 PDI_a_EFP1_N PDIa fami 99.5 2.2E-13 4.7E-18 102.0 9.7 101 101-207 8-113 (113)
70 TIGR02187 GlrX_arch Glutaredox 99.5 4.3E-12 9.3E-17 107.3 17.9 190 7-209 7-214 (215)
71 cd02986 DLP Dim1 family, Dim1- 99.4 2.7E-13 5.8E-18 99.5 6.5 93 239-334 4-108 (114)
72 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 6.3E-13 1.4E-17 99.1 8.7 101 102-207 1-104 (104)
73 PTZ00051 thioredoxin; Provisio 99.4 4.5E-13 9.6E-18 98.7 7.7 91 232-329 2-95 (98)
74 PF00085 Thioredoxin: Thioredo 99.4 1E-12 2.2E-17 97.8 9.1 100 104-209 1-102 (103)
75 TIGR01295 PedC_BrcD bacterioci 99.4 1E-12 2.2E-17 100.2 9.2 96 232-334 8-121 (122)
76 cd02947 TRX_family TRX family; 99.4 1.2E-12 2.6E-17 95.0 8.8 90 239-334 2-93 (93)
77 PF13848 Thioredoxin_6: Thiore 99.4 2.1E-11 4.5E-16 100.8 16.6 172 135-335 7-184 (184)
78 cd02996 PDI_a_ERp44 PDIa famil 99.4 2.2E-12 4.8E-17 96.8 9.1 100 103-207 2-108 (108)
79 cd02982 PDI_b'_family Protein 99.4 2.7E-12 5.9E-17 95.4 8.3 84 248-336 12-102 (103)
80 KOG0908 Thioredoxin-like prote 99.4 4.5E-12 9.8E-17 103.7 9.3 104 232-341 3-110 (288)
81 cd02951 SoxW SoxW family; SoxW 99.4 4.2E-12 9E-17 98.0 8.8 90 246-338 11-120 (125)
82 cd02982 PDI_b'_family Protein 99.3 6.6E-12 1.4E-16 93.3 9.2 96 111-211 4-103 (103)
83 cd03007 PDI_a_ERp29_N PDIa fam 99.3 7.6E-12 1.6E-16 93.0 8.8 104 104-209 3-114 (116)
84 cd03001 PDI_a_P5 PDIa family, 99.3 1.2E-11 2.5E-16 92.0 9.2 99 104-207 2-102 (103)
85 cd03002 PDI_a_MPD1_like PDI fa 99.3 1.2E-11 2.6E-16 93.0 9.3 102 104-207 2-108 (109)
86 PTZ00062 glutaredoxin; Provisi 99.3 1.9E-11 4E-16 100.8 9.4 92 238-341 7-98 (204)
87 TIGR00411 redox_disulf_1 small 99.3 2.4E-11 5.1E-16 86.3 8.7 78 251-336 2-81 (82)
88 cd03065 PDI_b_Calsequestrin_N 99.3 2.1E-11 4.6E-16 91.9 8.3 102 103-211 10-119 (120)
89 KOG0910 Thioredoxin-like prote 99.3 2.3E-11 5.1E-16 92.8 8.3 106 101-212 42-149 (150)
90 cd02993 PDI_a_APS_reductase PD 99.3 3.2E-11 6.9E-16 90.5 8.6 100 104-207 3-109 (109)
91 cd02952 TRP14_like Human TRX-r 99.3 2E-11 4.4E-16 91.6 7.4 91 238-333 10-118 (119)
92 TIGR01126 pdi_dom protein disu 99.2 3.6E-11 7.9E-16 89.1 8.6 98 107-210 1-101 (102)
93 cd03073 PDI_b'_ERp72_ERp57 PDI 99.2 4.3E-11 9.3E-16 89.3 8.7 102 104-211 1-111 (111)
94 cd02994 PDI_a_TMX PDIa family, 99.2 5.5E-11 1.2E-15 88.0 9.2 98 103-209 2-101 (101)
95 KOG4277 Uncharacterized conser 99.2 1.8E-10 3.8E-15 96.9 12.9 182 119-336 43-230 (468)
96 cd03005 PDI_a_ERp46 PDIa famil 99.2 3.7E-11 8E-16 89.1 8.0 97 104-207 2-102 (102)
97 cd02995 PDI_a_PDI_a'_C PDIa fa 99.2 7.7E-11 1.7E-15 87.7 9.0 99 104-207 2-104 (104)
98 cd02959 ERp19 Endoplasmic reti 99.2 3.1E-11 6.8E-16 91.3 6.7 94 245-338 16-114 (117)
99 cd02998 PDI_a_ERp38 PDIa famil 99.2 1.4E-10 3E-15 86.4 9.4 99 104-207 2-105 (105)
100 PTZ00443 Thioredoxin domain-co 99.2 9.8E-11 2.1E-15 98.2 9.2 105 102-212 30-140 (224)
101 PTZ00062 glutaredoxin; Provisi 99.2 2.2E-10 4.8E-15 94.4 10.9 158 111-313 8-177 (204)
102 KOG1731 FAD-dependent sulfhydr 99.2 2.2E-11 4.7E-16 111.3 5.1 110 228-337 37-153 (606)
103 PRK09381 trxA thioredoxin; Pro 99.2 2.7E-10 5.9E-15 85.5 10.1 104 102-211 3-108 (109)
104 cd02983 P5_C P5 family, C-term 99.2 7E-10 1.5E-14 85.4 12.4 110 102-217 2-121 (130)
105 COG3118 Thioredoxin domain-con 99.2 2E-10 4.3E-15 97.5 9.6 107 101-213 22-132 (304)
106 cd02997 PDI_a_PDIR PDIa family 99.1 2.7E-10 5.9E-15 84.7 8.2 100 104-207 2-104 (104)
107 PRK10996 thioredoxin 2; Provis 99.1 4.2E-10 9.2E-15 88.1 9.1 101 104-210 37-138 (139)
108 cd02956 ybbN ybbN protein fami 99.1 4.5E-10 9.7E-15 82.3 8.6 92 111-208 2-96 (96)
109 TIGR00412 redox_disulf_2 small 99.1 2.4E-10 5.2E-15 79.4 6.1 73 252-333 2-75 (76)
110 cd02961 PDI_a_family Protein D 99.1 5.2E-10 1.1E-14 82.5 8.0 97 106-207 2-101 (101)
111 cd02999 PDI_a_ERp44_like PDIa 99.1 5.3E-10 1.2E-14 82.2 7.7 82 118-207 17-100 (100)
112 cd02963 TRX_DnaJ TRX domain, D 99.1 4.9E-10 1.1E-14 84.3 7.6 86 118-209 23-110 (111)
113 TIGR01068 thioredoxin thioredo 99.0 1.8E-09 3.9E-14 79.7 8.6 97 108-210 2-100 (101)
114 TIGR00424 APS_reduc 5'-adenyly 99.0 1.9E-09 4.2E-14 99.6 10.5 107 100-210 349-462 (463)
115 PRK00293 dipZ thiol:disulfide 99.0 1.9E-09 4.1E-14 103.8 10.2 97 238-337 461-570 (571)
116 cd03000 PDI_a_TMX3 PDIa family 99.0 3.5E-09 7.6E-14 78.7 9.2 93 110-210 7-103 (104)
117 cd02965 HyaE HyaE family; HyaE 99.0 2.7E-09 5.8E-14 78.6 8.3 94 104-203 12-108 (111)
118 PLN02309 5'-adenylylsulfate re 98.9 4.1E-09 8.8E-14 97.4 10.0 105 101-210 344-456 (457)
119 PHA02125 thioredoxin-like prot 98.9 2.2E-09 4.7E-14 74.5 6.2 67 252-331 2-71 (75)
120 cd02950 TxlA TRX-like protein 98.9 1.1E-08 2.5E-13 80.2 10.7 104 111-217 12-116 (142)
121 TIGR02738 TrbB type-F conjugat 98.9 6.8E-09 1.5E-13 82.1 9.4 87 248-336 50-152 (153)
122 PF13098 Thioredoxin_2: Thiore 98.9 9.2E-10 2E-14 83.1 4.2 84 246-333 3-112 (112)
123 TIGR02740 TraF-like TraF-like 98.9 4.7E-09 1E-13 91.3 8.7 89 247-338 165-265 (271)
124 cd02955 SSP411 TRX domain, SSP 98.9 7.9E-09 1.7E-13 78.6 8.4 90 245-336 12-118 (124)
125 KOG0913 Thiol-disulfide isomer 98.9 7E-10 1.5E-14 90.3 2.6 99 231-336 25-125 (248)
126 PHA02278 thioredoxin-like prot 98.9 5.9E-09 1.3E-13 76.7 7.3 94 110-206 5-100 (103)
127 KOG1731 FAD-dependent sulfhydr 98.9 4.5E-09 9.8E-14 96.4 7.9 221 102-338 39-270 (606)
128 cd02954 DIM1 Dim1 family; Dim1 98.9 1.5E-08 3.2E-13 75.2 9.3 73 111-187 4-79 (114)
129 cd02948 TRX_NDPK TRX domain, T 98.9 1E-08 2.2E-13 75.8 8.4 95 107-209 5-101 (102)
130 cd02989 Phd_like_TxnDC9 Phosdu 98.9 1.8E-08 3.9E-13 75.8 9.7 99 104-207 6-112 (113)
131 PRK14018 trifunctional thiored 98.9 2.6E-08 5.6E-13 93.4 12.6 90 244-336 52-172 (521)
132 PRK11509 hydrogenase-1 operon 98.8 2.4E-08 5.1E-13 75.9 9.3 104 234-341 21-128 (132)
133 cd02953 DsbDgamma DsbD gamma f 98.8 1.8E-08 3.8E-13 74.9 8.2 95 111-207 3-103 (104)
134 cd02985 TRX_CDSP32 TRX family, 98.8 1.8E-08 4E-13 74.6 7.7 95 110-209 4-101 (103)
135 cd02992 PDI_a_QSOX PDIa family 98.8 3.6E-08 7.8E-13 74.4 9.4 82 103-186 2-88 (114)
136 TIGR03143 AhpF_homolog putativ 98.8 1.5E-07 3.3E-12 91.1 15.8 183 120-333 366-554 (555)
137 PRK03147 thiol-disulfide oxido 98.8 5.4E-08 1.2E-12 79.5 10.6 102 232-336 46-171 (173)
138 cd02962 TMX2 TMX2 family; comp 98.8 2.2E-08 4.8E-13 78.9 7.9 81 103-187 29-119 (152)
139 PLN00410 U5 snRNP protein, DIM 98.8 5.2E-08 1.1E-12 75.3 9.2 102 110-215 12-124 (142)
140 cd02957 Phd_like Phosducin (Ph 98.8 3.7E-08 8.1E-13 74.3 8.3 100 102-207 4-112 (113)
141 cd02984 TRX_PICOT TRX domain, 98.8 2.9E-08 6.3E-13 72.7 7.2 91 110-207 3-96 (97)
142 cd02975 PfPDO_like_N Pyrococcu 98.8 5E-08 1.1E-12 73.5 8.4 91 117-212 20-111 (113)
143 PRK15412 thiol:disulfide inter 98.7 8E-08 1.7E-12 79.2 9.7 86 247-338 67-177 (185)
144 cd02973 TRX_GRX_like Thioredox 98.7 2.9E-08 6.2E-13 67.3 5.8 55 251-308 2-58 (67)
145 cd02949 TRX_NTR TRX domain, no 98.7 7.9E-08 1.7E-12 70.4 8.1 87 116-208 10-97 (97)
146 TIGR00385 dsbE periplasmic pro 98.7 1.3E-07 2.8E-12 77.2 9.9 85 247-338 62-172 (173)
147 cd02964 TryX_like_family Trypa 98.7 6.8E-08 1.5E-12 75.1 7.7 68 247-314 16-111 (132)
148 PTZ00051 thioredoxin; Provisio 98.7 8E-08 1.7E-12 70.5 7.0 74 107-185 6-80 (98)
149 cd03009 TryX_like_TryX_NRX Try 98.7 8.6E-08 1.9E-12 74.4 7.5 68 247-314 17-111 (131)
150 cd02958 UAS UAS family; UAS is 98.7 1.7E-07 3.7E-12 70.8 8.8 90 245-338 14-112 (114)
151 cd02960 AGR Anterior Gradient 98.7 1.9E-07 4.2E-12 70.9 8.8 68 245-314 20-91 (130)
152 PF13905 Thioredoxin_8: Thiore 98.6 1E-07 2.2E-12 69.5 7.1 67 248-314 1-94 (95)
153 cd03011 TlpA_like_ScsD_MtbDsbE 98.6 1.5E-07 3.3E-12 72.2 8.3 90 235-331 8-120 (123)
154 cd02947 TRX_family TRX family; 98.6 1.6E-07 3.5E-12 67.7 8.0 90 111-207 2-92 (93)
155 cd03010 TlpA_like_DsbE TlpA-li 98.6 2.1E-07 4.5E-12 71.9 8.4 78 247-329 24-126 (127)
156 cd02987 Phd_like_Phd Phosducin 98.6 2.6E-07 5.7E-12 75.1 9.1 103 101-209 61-173 (175)
157 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 1.8E-07 3.9E-12 66.9 6.9 72 250-330 14-87 (89)
158 cd02966 TlpA_like_family TlpA- 98.6 2.9E-07 6.3E-12 69.3 8.2 66 248-314 19-109 (116)
159 cd03008 TryX_like_RdCVF Trypar 98.6 1.7E-07 3.7E-12 73.2 6.6 68 247-314 24-124 (146)
160 KOG0907 Thioredoxin [Posttrans 98.5 4.4E-07 9.5E-12 66.9 7.7 83 119-209 21-104 (106)
161 PF13899 Thioredoxin_7: Thiore 98.5 5.2E-08 1.1E-12 68.9 2.6 64 245-310 14-81 (82)
162 PRK13728 conjugal transfer pro 98.5 1.1E-06 2.3E-11 70.9 10.3 84 252-339 73-173 (181)
163 COG4232 Thiol:disulfide interc 98.5 1.9E-07 4.1E-12 86.9 6.7 97 239-337 464-568 (569)
164 PLN02919 haloacid dehalogenase 98.5 4.8E-07 1E-11 93.3 9.4 89 247-338 419-537 (1057)
165 cd03070 PDI_b_ERp44 PDIb famil 98.5 9.6E-07 2.1E-11 62.4 7.6 81 2-88 3-85 (91)
166 cd02986 DLP Dim1 family, Dim1- 98.5 2.5E-06 5.4E-11 63.0 10.0 90 118-212 13-112 (114)
167 KOG0914 Thioredoxin-like prote 98.5 2.3E-07 4.9E-12 74.8 4.8 86 229-315 123-218 (265)
168 cd02967 mauD Methylamine utili 98.4 5.9E-07 1.3E-11 67.8 6.7 40 247-288 20-59 (114)
169 smart00594 UAS UAS domain. 98.4 1.9E-06 4E-11 65.9 9.3 93 239-333 15-121 (122)
170 TIGR00411 redox_disulf_1 small 98.4 2.6E-06 5.6E-11 60.1 9.0 78 123-210 3-81 (82)
171 cd02988 Phd_like_VIAF Phosduci 98.4 2.3E-06 5.1E-11 70.5 9.2 103 99-209 79-190 (192)
172 cd02951 SoxW SoxW family; SoxW 98.4 1.9E-06 4.1E-11 66.3 8.2 97 115-213 9-121 (125)
173 PF07912 ERp29_N: ERp29, N-ter 98.4 6.6E-06 1.4E-10 60.6 10.0 104 231-338 5-120 (126)
174 TIGR01295 PedC_BrcD bacterioci 98.3 1.9E-06 4.1E-11 65.7 6.8 101 103-208 7-121 (122)
175 PF02114 Phosducin: Phosducin; 98.3 6.8E-06 1.5E-10 71.0 9.7 110 229-341 124-242 (265)
176 TIGR03143 AhpF_homolog putativ 98.3 5.5E-05 1.2E-09 73.4 17.0 186 7-207 355-554 (555)
177 PRK11509 hydrogenase-1 operon 98.2 1E-05 2.2E-10 61.6 9.1 105 99-213 17-126 (132)
178 PLN02399 phospholipid hydroper 98.2 1.3E-05 2.8E-10 68.0 10.4 90 247-338 98-235 (236)
179 cd03012 TlpA_like_DipZ_like Tl 98.2 4.5E-06 9.8E-11 64.2 7.0 43 247-290 22-64 (126)
180 cd02983 P5_C P5 family, C-term 98.2 1.7E-05 3.7E-10 61.0 9.4 101 1-102 5-117 (130)
181 TIGR02661 MauD methylamine deh 98.1 1.6E-05 3.4E-10 65.8 9.3 85 247-336 73-178 (189)
182 PTZ00056 glutathione peroxidas 98.1 8.4E-06 1.8E-10 67.9 7.6 93 247-341 38-182 (199)
183 cd02952 TRP14_like Human TRX-r 98.1 1.2E-05 2.6E-10 60.5 6.9 64 119-183 21-97 (119)
184 KOG0908 Thioredoxin-like prote 98.1 1.8E-05 3.9E-10 65.6 8.3 102 104-213 4-108 (288)
185 PLN02412 probable glutathione 98.1 4.3E-05 9.3E-10 61.9 10.4 89 248-338 29-165 (167)
186 PRK15317 alkyl hydroperoxide r 98.1 0.00013 2.8E-09 70.3 15.3 177 120-338 19-199 (517)
187 cd01659 TRX_superfamily Thiore 98.1 1.6E-05 3.4E-10 52.6 6.5 58 252-312 1-63 (69)
188 PF08534 Redoxin: Redoxin; In 98.1 1.8E-05 3.8E-10 62.6 7.5 77 247-325 27-136 (146)
189 cd02969 PRX_like1 Peroxiredoxi 98.0 4.3E-05 9.3E-10 62.2 9.6 90 247-340 24-155 (171)
190 TIGR02196 GlrX_YruB Glutaredox 98.0 1.6E-05 3.4E-10 54.6 5.8 67 252-334 2-74 (74)
191 TIGR02200 GlrX_actino Glutared 98.0 1.9E-05 4.1E-10 54.8 6.1 68 252-334 2-76 (77)
192 PF13192 Thioredoxin_3: Thiore 98.0 2.7E-05 5.8E-10 54.0 6.6 72 253-334 3-76 (76)
193 cd03067 PDI_b_PDIR_N PDIb fami 98.0 3.9E-05 8.5E-10 54.1 7.1 99 110-209 10-110 (112)
194 COG0526 TrxA Thiol-disulfide i 98.0 2.7E-05 5.8E-10 58.6 7.1 66 248-315 32-102 (127)
195 PF13728 TraF: F plasmid trans 97.9 4E-05 8.6E-10 64.4 7.8 82 248-332 120-213 (215)
196 PTZ00256 glutathione peroxidas 97.9 0.00019 4.1E-09 59.0 11.0 42 248-290 40-82 (183)
197 TIGR02540 gpx7 putative glutat 97.9 0.00022 4.8E-09 56.8 11.0 87 248-336 22-152 (153)
198 TIGR03140 AhpF alkyl hydropero 97.9 0.00068 1.5E-08 65.3 16.0 178 120-338 19-200 (515)
199 cd03072 PDI_b'_ERp44 PDIb' fam 97.8 0.00011 2.4E-09 54.9 7.6 101 232-338 1-109 (111)
200 PF07912 ERp29_N: ERp29, N-ter 97.8 0.00043 9.3E-09 51.2 10.1 93 8-101 13-120 (126)
201 COG2143 Thioredoxin-related pr 97.8 0.00032 7E-09 53.9 9.7 91 245-338 39-150 (182)
202 TIGR02739 TraF type-F conjugat 97.8 0.00036 7.8E-09 59.8 10.8 88 248-338 150-249 (256)
203 PF13098 Thioredoxin_2: Thiore 97.7 8.7E-05 1.9E-09 55.7 5.7 88 118-207 4-112 (112)
204 KOG2603 Oligosaccharyltransfer 97.7 0.00023 5E-09 61.2 8.7 114 229-342 39-171 (331)
205 PRK13703 conjugal pilus assemb 97.7 0.00047 1E-08 58.7 10.4 88 248-338 143-242 (248)
206 cd02981 PDI_b_family Protein D 97.7 0.00012 2.6E-09 53.3 6.1 83 245-336 14-97 (97)
207 PRK14018 trifunctional thiored 97.7 0.00041 8.9E-09 65.6 11.0 104 101-209 38-171 (521)
208 TIGR01626 ytfJ_HI0045 conserve 97.6 0.00025 5.3E-09 57.7 7.9 85 248-333 59-176 (184)
209 TIGR02740 TraF-like TraF-like 97.6 0.00043 9.3E-09 60.5 9.6 93 119-212 166-265 (271)
210 PRK11200 grxA glutaredoxin 1; 97.6 0.00037 7.9E-09 49.4 7.5 75 251-338 2-84 (85)
211 KOG0911 Glutaredoxin-related p 97.6 0.00031 6.7E-09 57.7 7.6 170 118-314 16-204 (227)
212 cd00340 GSH_Peroxidase Glutath 97.6 0.00017 3.7E-09 57.4 5.8 41 248-290 22-62 (152)
213 cd02991 UAS_ETEA UAS family, E 97.6 0.00034 7.4E-09 52.6 7.0 91 245-338 14-114 (116)
214 PRK03147 thiol-disulfide oxido 97.5 0.001 2.2E-08 54.1 10.3 91 118-210 60-171 (173)
215 cd03067 PDI_b_PDIR_N PDIb fami 97.5 0.00066 1.4E-08 48.1 7.6 97 2-98 5-110 (112)
216 cd02973 TRX_GRX_like Thioredox 97.5 0.00041 8.8E-09 46.6 6.6 54 123-181 3-57 (67)
217 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00013 2.8E-09 51.5 4.2 55 252-312 1-62 (84)
218 TIGR02738 TrbB type-F conjugat 97.5 0.0016 3.5E-08 51.6 10.5 90 119-210 50-152 (153)
219 cd03074 PDI_b'_Calsequestrin_C 97.5 0.0016 3.5E-08 46.6 9.2 106 102-211 1-120 (120)
220 PRK15317 alkyl hydroperoxide r 97.5 0.0069 1.5E-07 58.5 16.7 181 6-209 7-196 (517)
221 cd03073 PDI_b'_ERp72_ERp57 PDI 97.4 0.00065 1.4E-08 50.7 7.3 95 235-336 4-110 (111)
222 PF06110 DUF953: Eukaryotic pr 97.4 0.0004 8.6E-09 52.1 6.1 65 246-312 17-99 (119)
223 cd02959 ERp19 Endoplasmic reti 97.4 0.00027 5.8E-09 53.5 4.8 68 115-185 15-84 (117)
224 cd02958 UAS UAS family; UAS is 97.4 0.0022 4.8E-08 48.2 9.9 93 117-212 15-112 (114)
225 KOG3170 Conserved phosducin-li 97.4 0.0012 2.6E-08 52.9 8.5 106 228-337 89-201 (240)
226 TIGR00412 redox_disulf_2 small 97.4 0.0012 2.5E-08 45.7 7.6 71 124-207 3-75 (76)
227 PF14595 Thioredoxin_9: Thiore 97.3 0.00018 3.9E-09 55.2 3.1 63 247-312 40-107 (129)
228 PRK00293 dipZ thiol:disulfide 97.3 0.0016 3.5E-08 63.2 10.3 91 118-211 473-570 (571)
229 TIGR03140 AhpF alkyl hydropero 97.3 0.017 3.6E-07 55.8 17.0 183 6-210 7-198 (515)
230 cd03017 PRX_BCP Peroxiredoxin 97.2 0.00087 1.9E-08 52.4 6.3 82 248-331 23-137 (140)
231 cd02966 TlpA_like_family TlpA- 97.2 0.0029 6.2E-08 47.1 8.4 67 119-187 19-107 (116)
232 smart00594 UAS UAS domain. 97.1 0.0049 1.1E-07 47.0 9.3 89 117-207 25-121 (122)
233 PF13905 Thioredoxin_8: Thiore 97.1 0.0033 7.2E-08 45.4 8.0 43 119-161 1-46 (95)
234 cd02955 SSP411 TRX domain, SSP 97.1 0.0024 5.1E-08 48.7 7.3 97 109-210 5-118 (124)
235 KOG1672 ATP binding protein [P 97.1 0.0013 2.8E-08 52.6 5.9 101 230-334 66-175 (211)
236 PHA02125 thioredoxin-like prot 97.1 0.0014 2.9E-08 45.2 5.3 49 123-181 2-51 (75)
237 cd03015 PRX_Typ2cys Peroxiredo 97.1 0.0047 1E-07 50.3 9.4 87 248-336 29-156 (173)
238 TIGR00385 dsbE periplasmic pro 97.1 0.0038 8.3E-08 50.8 8.7 90 118-212 62-172 (173)
239 PF02114 Phosducin: Phosducin; 97.0 0.0025 5.4E-08 55.2 7.6 104 101-210 124-237 (265)
240 KOG0914 Thioredoxin-like prote 97.0 0.00088 1.9E-08 54.5 4.2 67 119-188 144-217 (265)
241 PF03190 Thioredox_DsbH: Prote 97.0 0.0015 3.3E-08 51.7 5.5 68 245-314 34-114 (163)
242 PF00578 AhpC-TSA: AhpC/TSA fa 97.0 0.0025 5.3E-08 48.6 6.7 46 247-293 24-70 (124)
243 cd03010 TlpA_like_DsbE TlpA-li 97.0 0.0039 8.4E-08 47.8 7.8 81 119-203 25-126 (127)
244 KOG3425 Uncharacterized conser 97.0 0.0059 1.3E-07 44.9 7.8 62 249-312 26-105 (128)
245 cd02968 SCO SCO (an acronym fo 97.0 0.0017 3.7E-08 50.8 5.7 46 247-292 21-69 (142)
246 cd02976 NrdH NrdH-redoxin (Nrd 97.0 0.0022 4.7E-08 43.5 5.3 65 252-332 2-72 (73)
247 cd03011 TlpA_like_ScsD_MtbDsbE 96.9 0.0065 1.4E-07 46.2 8.5 83 118-205 19-120 (123)
248 cd03026 AhpF_NTD_C TRX-GRX-lik 96.9 0.0071 1.5E-07 43.1 7.8 54 123-181 16-70 (89)
249 KOG2501 Thioredoxin, nucleored 96.9 0.002 4.3E-08 50.3 5.1 68 247-314 32-127 (157)
250 PF11009 DUF2847: Protein of u 96.8 0.0032 6.9E-08 45.9 5.5 89 2-92 3-104 (105)
251 cd02970 PRX_like2 Peroxiredoxi 96.8 0.0034 7.3E-08 49.5 5.8 45 248-293 23-68 (149)
252 PF00462 Glutaredoxin: Glutare 96.7 0.002 4.4E-08 42.1 3.5 49 252-308 1-55 (60)
253 KOG0911 Glutaredoxin-related p 96.7 0.001 2.2E-08 54.7 2.4 76 246-326 15-92 (227)
254 PRK10606 btuE putative glutath 96.7 0.0033 7.1E-08 51.4 5.3 43 248-292 25-67 (183)
255 cd03018 PRX_AhpE_like Peroxire 96.6 0.0038 8.3E-08 49.3 5.3 42 249-291 29-71 (149)
256 cd03071 PDI_b'_NRX PDIb' famil 96.6 0.012 2.5E-07 42.3 6.9 89 120-212 15-116 (116)
257 TIGR02183 GRXA Glutaredoxin, G 96.6 0.0056 1.2E-07 43.4 5.4 75 252-339 2-84 (86)
258 PRK15412 thiol:disulfide inter 96.6 0.019 4.1E-07 47.3 9.2 91 118-213 67-178 (185)
259 cd02967 mauD Methylamine utili 96.6 0.0079 1.7E-07 45.0 6.5 61 119-180 21-82 (114)
260 cd03009 TryX_like_TryX_NRX Try 96.5 0.013 2.7E-07 45.2 7.4 65 118-183 17-106 (131)
261 TIGR02190 GlrX-dom Glutaredoxi 96.5 0.0042 9E-08 43.2 4.0 55 248-312 6-65 (79)
262 PRK10329 glutaredoxin-like pro 96.5 0.019 4.1E-07 40.1 7.3 71 252-338 3-78 (81)
263 cd03419 GRX_GRXh_1_2_like Glut 96.4 0.005 1.1E-07 43.0 4.1 53 252-312 2-61 (82)
264 PRK13728 conjugal transfer pro 96.4 0.035 7.6E-07 45.0 9.1 88 123-212 73-172 (181)
265 cd02066 GRX_family Glutaredoxi 96.3 0.0065 1.4E-07 40.9 4.3 48 252-307 2-55 (72)
266 PLN02919 haloacid dehalogenase 96.3 0.022 4.8E-07 59.5 9.6 92 118-211 419-536 (1057)
267 cd03014 PRX_Atyp2cys Peroxired 96.3 0.01 2.2E-07 46.5 5.6 41 248-291 26-67 (143)
268 cd02964 TryX_like_family Trypa 96.3 0.024 5.3E-07 43.7 7.6 65 118-183 16-106 (132)
269 cd03069 PDI_b_ERp57 PDIb famil 96.2 0.034 7.3E-07 41.0 7.9 88 111-209 10-102 (104)
270 PF13728 TraF: F plasmid trans 96.2 0.031 6.8E-07 47.0 8.5 82 122-205 123-212 (215)
271 PRK09437 bcp thioredoxin-depen 96.2 0.023 5E-07 45.2 7.4 44 247-291 29-73 (154)
272 cd02971 PRX_family Peroxiredox 96.2 0.01 2.2E-07 46.2 5.3 44 247-291 21-65 (140)
273 KOG1672 ATP binding protein [P 96.2 0.015 3.4E-07 46.7 6.1 112 92-209 57-176 (211)
274 TIGR03137 AhpC peroxiredoxin. 96.2 0.0095 2.1E-07 49.1 5.2 86 248-334 31-153 (187)
275 PRK10877 protein disulfide iso 96.1 0.011 2.4E-07 50.4 5.5 78 247-336 106-230 (232)
276 KOG3414 Component of the U4/U6 96.1 0.036 7.8E-07 41.2 7.1 95 240-337 14-120 (142)
277 PRK00522 tpx lipid hydroperoxi 96.1 0.014 3.1E-07 47.1 5.7 41 248-291 44-85 (167)
278 cd03066 PDI_b_Calsequestrin_mi 96.0 0.078 1.7E-06 38.8 8.9 91 108-209 7-99 (102)
279 TIGR02189 GlrX-like_plant Glut 96.0 0.011 2.3E-07 43.1 4.2 55 250-314 8-71 (99)
280 PHA03050 glutaredoxin; Provisi 96.0 0.014 3.1E-07 43.2 4.8 53 251-308 14-75 (108)
281 cd03027 GRX_DEP Glutaredoxin ( 96.0 0.011 2.5E-07 40.3 4.0 48 252-307 3-56 (73)
282 cd03029 GRX_hybridPRX5 Glutare 95.9 0.014 3.1E-07 39.6 4.4 64 252-333 3-71 (72)
283 TIGR00365 monothiol glutaredox 95.9 0.013 2.9E-07 42.5 4.4 52 248-307 11-72 (97)
284 PF05768 DUF836: Glutaredoxin- 95.9 0.013 2.8E-07 41.0 4.0 78 252-334 2-81 (81)
285 KOG0913 Thiol-disulfide isomer 95.9 0.0042 9.2E-08 51.4 1.7 100 103-211 25-126 (248)
286 TIGR02181 GRX_bact Glutaredoxi 95.9 0.0086 1.9E-07 41.6 3.1 48 252-307 1-54 (79)
287 TIGR02194 GlrX_NrdH Glutaredox 95.9 0.014 3.1E-07 39.7 4.0 48 253-308 2-54 (72)
288 KOG2603 Oligosaccharyltransfer 95.8 0.18 3.8E-06 44.0 11.2 119 90-212 28-167 (331)
289 cd03028 GRX_PICOT_like Glutare 95.8 0.016 3.5E-07 41.4 4.3 56 248-313 7-72 (90)
290 TIGR02739 TraF type-F conjugat 95.8 0.086 1.9E-06 45.4 9.2 88 123-212 154-249 (256)
291 cd03418 GRX_GRXb_1_3_like Glut 95.8 0.016 3.5E-07 39.6 4.1 52 252-313 2-60 (75)
292 cd02991 UAS_ETEA UAS family, E 95.7 0.19 4.1E-06 37.7 10.0 94 117-212 15-114 (116)
293 cd02969 PRX_like1 Peroxiredoxi 95.7 0.19 4.1E-06 40.7 10.9 98 118-217 24-158 (171)
294 cd03008 TryX_like_RdCVF Trypar 95.6 0.072 1.6E-06 41.8 7.7 43 118-160 24-75 (146)
295 PTZ00056 glutathione peroxidas 95.5 0.12 2.6E-06 43.0 9.1 41 119-159 39-81 (199)
296 PRK13703 conjugal pilus assemb 95.4 0.13 2.9E-06 44.0 9.2 89 123-213 147-243 (248)
297 PRK13190 putative peroxiredoxi 95.4 0.11 2.3E-06 43.4 8.6 89 248-337 27-154 (202)
298 PRK10824 glutaredoxin-4; Provi 95.4 0.02 4.2E-07 42.8 3.5 57 248-314 14-80 (115)
299 PF07449 HyaE: Hydrogenase-1 e 95.4 0.015 3.2E-07 42.7 2.8 89 231-324 10-102 (107)
300 cd03012 TlpA_like_DipZ_like Tl 95.3 0.12 2.6E-06 39.5 8.0 41 118-158 22-64 (126)
301 KOG3171 Conserved phosducin-li 95.2 0.095 2.1E-06 42.8 7.0 106 230-338 138-252 (273)
302 TIGR02661 MauD methylamine deh 95.1 0.23 4.9E-06 41.0 9.5 92 118-213 73-181 (189)
303 PLN02399 phospholipid hydroper 95.0 0.28 6E-06 41.9 9.9 42 118-159 98-141 (236)
304 COG0695 GrxC Glutaredoxin and 94.9 0.053 1.2E-06 37.7 4.4 49 252-308 3-59 (80)
305 PRK10638 glutaredoxin 3; Provi 94.9 0.04 8.7E-07 38.6 3.8 49 252-308 4-58 (83)
306 PRK10382 alkyl hydroperoxide r 94.8 0.066 1.4E-06 44.0 5.5 88 248-336 31-155 (187)
307 PF13192 Thioredoxin_3: Thiore 94.7 0.21 4.6E-06 34.3 7.1 69 127-208 6-76 (76)
308 cd03023 DsbA_Com1_like DsbA fa 94.4 0.11 2.4E-06 40.9 5.8 41 247-290 4-44 (154)
309 cd03068 PDI_b_ERp72 PDIb famil 94.2 0.33 7.2E-06 35.9 7.5 92 108-209 7-106 (107)
310 cd01659 TRX_superfamily Thiore 94.2 0.24 5.2E-06 31.6 6.3 57 124-186 2-62 (69)
311 PF13899 Thioredoxin_7: Thiore 94.0 0.13 2.8E-06 35.9 4.8 47 116-162 14-64 (82)
312 PF11009 DUF2847: Protein of u 93.9 0.11 2.3E-06 38.0 4.2 89 238-329 8-104 (105)
313 PRK15000 peroxidase; Provision 93.9 0.13 2.9E-06 42.8 5.4 88 247-335 33-160 (200)
314 PRK11657 dsbG disulfide isomer 93.8 0.27 5.8E-06 42.6 7.3 35 298-334 215-249 (251)
315 cd02960 AGR Anterior Gradient 93.8 0.33 7.2E-06 37.1 6.9 68 115-188 19-90 (130)
316 COG0526 TrxA Thiol-disulfide i 93.7 0.52 1.1E-05 34.5 8.1 64 119-186 32-99 (127)
317 PF13462 Thioredoxin_4: Thiore 93.6 0.29 6.4E-06 38.9 6.9 45 247-291 11-55 (162)
318 PF02966 DIM1: Mitosis protein 93.5 0.62 1.3E-05 35.3 7.7 93 239-335 10-115 (133)
319 PLN02412 probable glutathione 93.4 0.68 1.5E-05 37.3 8.6 41 119-159 29-71 (167)
320 TIGR02540 gpx7 putative glutat 93.3 1 2.2E-05 35.6 9.5 40 119-158 22-63 (153)
321 PF08534 Redoxin: Redoxin; In 93.3 0.47 1E-05 37.1 7.5 44 118-161 27-73 (146)
322 COG4232 Thiol:disulfide interc 93.1 0.4 8.7E-06 45.7 7.6 96 112-210 465-567 (569)
323 KOG1752 Glutaredoxin and relat 93.0 0.18 3.9E-06 36.9 4.3 57 250-314 14-77 (104)
324 COG2143 Thioredoxin-related pr 93.0 1.9 4.1E-05 33.7 9.8 93 119-213 42-151 (182)
325 cd03016 PRX_1cys Peroxiredoxin 92.8 0.19 4.1E-06 42.0 4.8 42 250-292 28-69 (203)
326 cd03019 DsbA_DsbA DsbA family, 92.7 0.22 4.8E-06 40.4 5.0 44 247-292 14-57 (178)
327 cd03074 PDI_b'_Calsequestrin_C 92.6 2.7 5.9E-05 30.5 9.5 103 233-336 4-119 (120)
328 cd02974 AhpF_NTD_N Alkyl hydro 92.6 2.5 5.4E-05 30.3 9.6 75 248-336 18-93 (94)
329 PTZ00137 2-Cys peroxiredoxin; 92.5 0.29 6.2E-06 42.4 5.5 88 248-336 98-224 (261)
330 PTZ00253 tryparedoxin peroxida 92.2 0.31 6.7E-06 40.6 5.3 88 248-336 36-163 (199)
331 PRK13599 putative peroxiredoxi 92.1 0.27 5.9E-06 41.4 4.9 88 248-336 28-155 (215)
332 TIGR02196 GlrX_YruB Glutaredox 92.1 0.78 1.7E-05 30.6 6.5 71 123-208 2-74 (74)
333 cd02972 DsbA_family DsbA famil 91.9 0.35 7.7E-06 34.3 4.7 40 252-293 1-40 (98)
334 KOG3414 Component of the U4/U6 91.8 2.5 5.5E-05 31.7 8.8 91 120-215 23-124 (142)
335 PRK12759 bifunctional gluaredo 91.7 0.27 5.9E-06 45.9 4.8 49 252-308 4-66 (410)
336 PRK13191 putative peroxiredoxi 91.7 0.36 7.9E-06 40.7 5.1 88 248-336 33-160 (215)
337 KOG3170 Conserved phosducin-li 91.3 2.6 5.6E-05 34.4 9.1 106 96-209 85-199 (240)
338 PRK13189 peroxiredoxin; Provis 90.8 0.5 1.1E-05 40.1 5.1 88 248-336 35-162 (222)
339 KOG3171 Conserved phosducin-li 89.6 1.2 2.7E-05 36.6 6.1 103 102-210 138-250 (273)
340 TIGR02180 GRX_euk Glutaredoxin 89.2 1.1 2.3E-05 31.1 5.1 54 124-180 2-58 (84)
341 cd03014 PRX_Atyp2cys Peroxired 89.0 1.4 3E-05 34.2 6.1 54 119-173 26-81 (143)
342 KOG2640 Thioredoxin [Function 88.9 0.18 3.8E-06 44.0 1.0 87 246-338 74-163 (319)
343 PF00578 AhpC-TSA: AhpC/TSA fa 88.7 1.6 3.4E-05 32.8 6.1 55 118-172 24-81 (124)
344 PTZ00256 glutathione peroxidas 88.5 4.8 0.0001 32.9 9.2 41 119-159 40-83 (183)
345 PF07449 HyaE: Hydrogenase-1 e 88.3 0.72 1.6E-05 33.9 3.6 78 104-187 11-92 (107)
346 cd03020 DsbA_DsbC_DsbG DsbA fa 88.2 0.95 2.1E-05 37.6 4.9 26 247-272 76-101 (197)
347 PRK10954 periplasmic protein d 88.2 0.7 1.5E-05 38.7 4.1 41 248-290 37-80 (207)
348 cd03017 PRX_BCP Peroxiredoxin 88.1 3.4 7.3E-05 31.8 7.8 41 119-159 23-66 (140)
349 TIGR01626 ytfJ_HI0045 conserve 87.8 4 8.7E-05 33.4 8.1 88 119-207 59-176 (184)
350 PRK00522 tpx lipid hydroperoxi 87.6 1.8 4E-05 34.8 6.1 55 119-174 44-100 (167)
351 KOG2501 Thioredoxin, nucleored 86.5 3.3 7.2E-05 32.6 6.6 41 119-159 33-77 (157)
352 PF02966 DIM1: Mitosis protein 86.1 13 0.00029 28.3 9.8 87 122-213 23-119 (133)
353 cd03015 PRX_Typ2cys Peroxiredo 85.7 8.3 0.00018 31.1 9.1 41 119-159 29-72 (173)
354 cd02977 ArsC_family Arsenate R 85.6 1 2.3E-05 33.0 3.4 78 253-338 2-88 (105)
355 cd00340 GSH_Peroxidase Glutath 85.4 2.3 4.9E-05 33.6 5.5 40 119-159 22-63 (152)
356 PF03190 Thioredox_DsbH: Prote 85.2 2.3 5E-05 33.9 5.2 93 90-187 6-112 (163)
357 PF05768 DUF836: Glutaredoxin- 83.1 3.7 8E-05 28.4 5.1 77 124-208 2-81 (81)
358 cd03031 GRX_GRX_like Glutaredo 82.4 2.6 5.6E-05 33.1 4.5 49 252-308 2-66 (147)
359 KOG3425 Uncharacterized conser 81.7 7.3 0.00016 29.1 6.2 65 119-183 25-102 (128)
360 COG0278 Glutaredoxin-related p 81.3 3.7 8E-05 29.5 4.4 58 248-314 14-81 (105)
361 cd03035 ArsC_Yffb Arsenate Red 81.2 2.2 4.9E-05 31.3 3.6 35 253-295 2-36 (105)
362 TIGR02200 GlrX_actino Glutared 81.1 3.8 8.2E-05 27.6 4.6 48 123-180 2-55 (77)
363 PRK01655 spxA transcriptional 81.0 2.2 4.9E-05 32.7 3.6 34 252-293 2-35 (131)
364 PRK10382 alkyl hydroperoxide r 80.5 20 0.00043 29.5 9.3 93 119-212 31-157 (187)
365 cd02970 PRX_like2 Peroxiredoxi 80.2 5.4 0.00012 30.9 5.8 42 120-161 24-68 (149)
366 cd03036 ArsC_like Arsenate Red 80.1 2.5 5.5E-05 31.3 3.6 78 253-338 2-89 (111)
367 cd03018 PRX_AhpE_like Peroxire 79.6 5.1 0.00011 31.2 5.5 54 120-173 29-85 (149)
368 PRK11200 grxA glutaredoxin 1; 79.5 6.2 0.00014 27.4 5.3 77 123-211 3-83 (85)
369 cd02968 SCO SCO (an acronym fo 79.2 4.4 9.5E-05 31.2 4.9 42 118-159 21-68 (142)
370 PF00837 T4_deiodinase: Iodoth 79.0 9.8 0.00021 32.3 7.0 87 198-287 53-141 (237)
371 PHA03075 glutaredoxin-like pro 78.9 4.6 9.9E-05 29.8 4.3 29 249-277 2-30 (123)
372 PRK12559 transcriptional regul 78.5 3.5 7.5E-05 31.7 4.0 35 252-294 2-36 (131)
373 PF13743 Thioredoxin_5: Thiore 77.2 5.2 0.00011 32.5 4.9 37 254-292 2-38 (176)
374 cd03040 GST_N_mPGES2 GST_N fam 77.1 9.1 0.0002 25.8 5.5 73 252-338 2-77 (77)
375 TIGR01617 arsC_related transcr 75.8 4.2 9.1E-05 30.5 3.7 78 253-338 2-89 (117)
376 cd03032 ArsC_Spx Arsenate Redu 75.5 4.9 0.00011 30.0 4.0 79 252-338 2-88 (115)
377 PRK15000 peroxidase; Provision 71.9 38 0.00082 28.1 8.9 41 119-159 34-77 (200)
378 PRK10606 btuE putative glutath 71.5 55 0.0012 26.8 12.7 40 119-159 25-66 (183)
379 PRK13344 spxA transcriptional 71.3 7.6 0.00016 29.9 4.2 36 252-295 2-37 (132)
380 PF14595 Thioredoxin_9: Thiore 71.3 8.1 0.00018 29.6 4.4 59 122-186 44-106 (129)
381 cd03041 GST_N_2GST_N GST_N fam 70.2 13 0.00028 25.2 4.9 69 252-336 2-76 (77)
382 cd02971 PRX_family Peroxiredox 70.1 13 0.00027 28.5 5.4 44 118-161 21-67 (140)
383 PF06110 DUF953: Eukaryotic pr 69.9 19 0.00042 27.1 6.0 65 118-183 18-96 (119)
384 PRK09437 bcp thioredoxin-depen 69.2 13 0.00028 29.2 5.3 56 118-173 29-87 (154)
385 cd02974 AhpF_NTD_N Alkyl hydro 68.6 41 0.00088 24.1 8.3 81 6-97 7-91 (94)
386 cd03060 GST_N_Omega_like GST_N 64.2 15 0.00032 24.4 4.1 49 253-307 2-53 (71)
387 COG1331 Highly conserved prote 62.5 19 0.00042 35.5 5.8 74 238-314 34-121 (667)
388 COG1393 ArsC Arsenate reductas 61.8 11 0.00024 28.2 3.4 35 251-293 2-36 (117)
389 cd00570 GST_N_family Glutathio 60.9 28 0.0006 22.1 5.1 50 253-308 2-55 (71)
390 PTZ00137 2-Cys peroxiredoxin; 60.1 1.2E+02 0.0025 26.5 9.8 91 120-211 99-225 (261)
391 cd02990 UAS_FAF1 UAS family, F 58.5 84 0.0018 24.3 9.5 88 247-337 20-133 (136)
392 TIGR03137 AhpC peroxiredoxin. 58.3 21 0.00045 29.3 4.8 42 119-160 31-75 (187)
393 PRK13189 peroxiredoxin; Provis 56.1 1.1E+02 0.0025 25.8 9.0 83 128-211 45-163 (222)
394 cd02066 GRX_family Glutaredoxi 55.6 34 0.00073 22.0 4.8 33 123-161 2-35 (72)
395 cd03033 ArsC_15kD Arsenate Red 54.5 17 0.00036 27.1 3.3 35 252-294 2-36 (113)
396 TIGR02183 GRXA Glutaredoxin, G 53.8 39 0.00083 23.5 4.9 77 123-211 2-82 (86)
397 PF13778 DUF4174: Domain of un 53.4 93 0.002 23.3 8.3 87 123-210 12-111 (118)
398 PRK11657 dsbG disulfide isomer 52.8 1.4E+02 0.003 25.8 9.2 38 167-207 211-248 (251)
399 cd03034 ArsC_ArsC Arsenate Red 52.2 23 0.00049 26.3 3.7 78 253-338 2-87 (112)
400 cd03419 GRX_GRXh_1_2_like Glut 52.2 41 0.00088 22.7 4.9 53 123-180 2-57 (82)
401 COG4545 Glutaredoxin-related p 52.0 16 0.00034 24.8 2.4 21 253-273 5-25 (85)
402 PF13417 GST_N_3: Glutathione 52.0 69 0.0015 21.3 6.9 70 254-339 1-73 (75)
403 cd03013 PRX5_like Peroxiredoxi 51.8 31 0.00068 27.2 4.7 42 250-292 32-75 (155)
404 TIGR02654 circ_KaiB circadian 51.6 57 0.0012 23.0 5.3 57 125-185 8-66 (87)
405 TIGR02190 GlrX-dom Glutaredoxi 50.1 60 0.0013 22.0 5.4 52 122-180 9-61 (79)
406 PF13462 Thioredoxin_4: Thiore 50.0 52 0.0011 25.7 5.8 39 122-160 15-56 (162)
407 PRK13190 putative peroxiredoxi 49.3 77 0.0017 26.3 6.9 97 15-112 59-167 (202)
408 TIGR00014 arsC arsenate reduct 49.1 27 0.00058 26.0 3.7 35 253-295 2-36 (114)
409 cd03059 GST_N_SspA GST_N famil 49.0 42 0.00091 22.0 4.4 67 253-335 2-71 (73)
410 PRK13191 putative peroxiredoxi 49.0 1.4E+02 0.0031 25.1 8.4 83 128-211 43-161 (215)
411 cd02978 KaiB_like KaiB-like fa 48.7 83 0.0018 21.3 5.5 49 131-183 13-62 (72)
412 PF06053 DUF929: Domain of unk 48.0 1E+02 0.0022 26.6 7.3 34 245-278 55-88 (249)
413 PF02630 SCO1-SenC: SCO1/SenC; 47.3 57 0.0012 26.3 5.6 50 247-296 51-103 (174)
414 COG3634 AhpF Alkyl hydroperoxi 47.2 2.3E+02 0.005 26.0 11.3 75 252-335 120-196 (520)
415 PF04592 SelP_N: Selenoprotein 46.2 40 0.00087 28.6 4.5 45 247-291 25-71 (238)
416 cd03019 DsbA_DsbA DsbA family, 44.7 43 0.00094 26.7 4.6 41 119-159 15-56 (178)
417 cd03023 DsbA_Com1_like DsbA fa 44.4 49 0.0011 25.4 4.8 37 121-158 7-44 (154)
418 TIGR02742 TrbC_Ftype type-F co 43.8 69 0.0015 24.6 5.2 52 287-338 56-116 (130)
419 PF01323 DSBA: DSBA-like thior 42.4 39 0.00084 27.4 4.1 38 251-289 1-38 (193)
420 PRK09301 circadian clock prote 40.9 1.4E+02 0.0031 21.8 6.5 67 125-198 11-79 (103)
421 COG1651 DsbG Protein-disulfide 40.9 1.2E+02 0.0026 25.8 7.0 44 249-293 85-128 (244)
422 cd03020 DsbA_DsbC_DsbG DsbA fa 40.1 25 0.00055 29.0 2.6 31 297-333 167-197 (197)
423 PRK10853 putative reductase; P 39.8 32 0.0007 25.8 2.8 35 252-294 2-36 (118)
424 PRK10329 glutaredoxin-like pro 39.6 1.2E+02 0.0027 20.7 6.8 74 124-212 4-78 (81)
425 cd03025 DsbA_FrnE_like DsbA fa 39.3 41 0.00089 27.3 3.7 27 252-278 3-29 (193)
426 COG2761 FrnE Predicted dithiol 38.6 65 0.0014 27.3 4.7 39 297-341 179-217 (225)
427 cd03051 GST_N_GTT2_like GST_N 38.5 31 0.00067 22.6 2.4 50 253-308 2-57 (74)
428 PF09673 TrbC_Ftype: Type-F co 38.1 77 0.0017 23.5 4.6 44 266-311 37-80 (113)
429 TIGR01616 nitro_assoc nitrogen 35.4 53 0.0012 25.0 3.4 35 251-293 2-36 (126)
430 KOG2507 Ubiquitin regulatory p 34.3 2.3E+02 0.0051 26.4 7.7 88 246-336 16-110 (506)
431 COG3411 Ferredoxin [Energy pro 34.1 85 0.0018 20.6 3.6 30 303-338 17-46 (64)
432 PRK10026 arsenate reductase; P 33.2 60 0.0013 25.3 3.5 22 252-273 4-25 (141)
433 KOG2983 Uncharacterized conser 33.0 1E+02 0.0022 26.7 4.9 65 199-278 206-270 (334)
434 TIGR02742 TrbC_Ftype type-F co 32.9 1.4E+02 0.0031 22.8 5.4 27 47-76 55-81 (130)
435 cd03037 GST_N_GRX2 GST_N famil 32.5 39 0.00084 22.2 2.1 20 254-273 3-22 (71)
436 PF03960 ArsC: ArsC family; I 32.0 79 0.0017 23.2 3.9 76 255-338 1-85 (110)
437 COG1999 Uncharacterized protei 32.0 1.3E+02 0.0027 25.2 5.5 44 247-290 66-114 (207)
438 cd02972 DsbA_family DsbA famil 30.8 76 0.0017 21.7 3.6 36 124-159 2-38 (98)
439 COG1225 Bcp Peroxiredoxin [Pos 30.3 1.2E+02 0.0027 24.0 4.8 33 248-280 30-63 (157)
440 PF01323 DSBA: DSBA-like thior 29.5 1E+02 0.0022 24.9 4.6 32 297-334 162-193 (193)
441 cd03045 GST_N_Delta_Epsilon GS 29.2 41 0.0009 22.1 1.8 49 253-307 2-56 (74)
442 PRK10877 protein disulfide iso 29.1 75 0.0016 27.1 3.7 39 165-210 192-230 (232)
443 COG1225 Bcp Peroxiredoxin [Pos 29.0 1.5E+02 0.0033 23.5 5.1 55 120-174 31-88 (157)
444 PF07700 HNOB: Heme NO binding 28.2 1.3E+02 0.0029 24.1 4.9 44 247-291 126-169 (171)
445 COG3634 AhpF Alkyl hydroperoxi 27.8 4.9E+02 0.011 24.0 13.5 179 7-209 8-196 (520)
446 cd03016 PRX_1cys Peroxiredoxin 27.0 1.1E+02 0.0023 25.5 4.2 35 126-160 33-69 (203)
447 PF03665 UPF0172: Uncharacteri 26.5 3.7E+02 0.0081 22.2 7.5 96 7-108 65-179 (196)
448 COG3019 Predicted metal-bindin 26.1 77 0.0017 24.5 2.8 73 250-337 26-104 (149)
449 KOG2868 Decapping enzyme compl 25.9 2.9E+02 0.0062 24.8 6.6 79 68-149 56-135 (335)
450 PTZ00253 tryparedoxin peroxida 25.8 1.6E+02 0.0035 24.2 5.1 43 119-161 36-81 (199)
451 PF08806 Sep15_SelM: Sep15/Sel 25.6 90 0.002 21.4 2.9 33 67-99 42-75 (78)
452 PF00255 GSHPx: Glutathione pe 23.5 2.8E+02 0.006 20.4 5.3 45 247-293 20-64 (108)
453 PF09776 Mitoc_L55: Mitochondr 23.4 60 0.0013 24.2 1.8 24 299-323 41-64 (116)
454 PRK00366 ispG 4-hydroxy-3-meth 22.8 3.2E+02 0.0069 25.0 6.5 76 258-335 272-355 (360)
455 COG3531 Predicted protein-disu 22.4 1.3E+02 0.0028 24.9 3.6 42 297-340 169-212 (212)
456 PHA02151 hypothetical protein 21.1 59 0.0013 25.5 1.4 17 245-261 200-216 (217)
457 COG2761 FrnE Predicted dithiol 20.5 2.4E+02 0.0052 23.9 5.0 45 166-217 175-219 (225)
458 PF07689 KaiB: KaiB domain; I 20.5 74 0.0016 22.1 1.7 47 131-181 9-56 (82)
459 PF04551 GcpE: GcpE protein; 20.1 1.2E+02 0.0027 27.5 3.4 75 260-336 271-358 (359)
460 PF13743 Thioredoxin_5: Thiore 20.0 1.7E+02 0.0038 23.6 4.1 36 125-160 2-38 (176)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-60 Score=429.78 Aligned_cols=351 Identities=38% Similarity=0.632 Sum_probs=315.7
Q ss_pred ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCc
Q 018164 2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRY 80 (360)
Q Consensus 2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~ 80 (360)
.+.++++++.|+.+++++|||||.+..+.. ..|..+| ++++++.|+++.++++++++++..+. .+.+++++++++..
T Consensus 138 ~l~~~~~a~~~l~~~~~~vig~F~d~~~~~-~~~~~~a~~l~~d~~F~~ts~~~~~~~~~~~~~~-~~~i~l~kk~d~~~ 215 (493)
T KOG0190|consen 138 TLKTVDEAEEFLSKKDVVVIGFFKDLESLA-ESFFDAASKLRDDYKFAHTSDSDVAKKLELNTEG-TFPIVLFKKFDELL 215 (493)
T ss_pred ecccHHHHHhhccCCceEEEEEecccccch-HHHHHHHHhccccceeeccCcHhHHhhccCCCCC-cceEEeccccccch
Confidence 588999999999999999999999988877 7777777 99999999999999999999986332 45599999999988
Q ss_pred cccCCCCChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEEEec--cchHHHHHHHHHHHHhhcCceEEEEEeC
Q 018164 81 TGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDI 158 (360)
Q Consensus 81 ~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~~i~f~~vd~ 158 (360)
..|+|+++.+.|.+||+.+++|+|.++|..+...+++...+..++||... ...+.+.+.+.++|++|+++++|+.+|.
T Consensus 216 ~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~ 295 (493)
T KOG0190|consen 216 VKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDP 295 (493)
T ss_pred hhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhcccceEEEEECh
Confidence 89999999999999999999999999999999999988777777777765 5889999999999999999999999988
Q ss_pred CCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCC-CCHHHHHHHHHHHhcCccCCccccCCCCCCCC-CceEEEc
Q 018164 159 ADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTN-ANVQIVV 236 (360)
Q Consensus 159 ~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~-~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~-~~v~~l~ 236 (360)
..+. +.++.||+....+++.++.....+.+|.++.. .+.++|..|+.+++.|+++|+++|+|+|++++ ++|+.++
T Consensus 296 e~~~---~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvV 372 (493)
T KOG0190|consen 296 ESFA---RVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVV 372 (493)
T ss_pred HHhh---HHHHhcCcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEe
Confidence 8775 68999999955465556777777889998665 88899999999999999999999999999997 8899999
Q ss_pred CccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEEEEEeCCCccC
Q 018164 237 GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKAN 316 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti~~~~~g~~~~ 316 (360)
++||++++.+.+++|||.||||||+||+++.|+|++||+.+++.+++.+++||++.|+++...+++||||++|++|.+.+
T Consensus 373 gknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI~~~pag~k~~ 452 (493)
T KOG0190|consen 373 GKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTILFFPAGHKSN 452 (493)
T ss_pred ecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCccccccccceEEEecCCCCCC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999988
Q ss_pred ceEecCCCCHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCCCCC
Q 018164 317 PIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQAPKDEL 360 (360)
Q Consensus 317 ~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~e~~~~~~~~~~de~ 360 (360)
|+.|+|.|+.+++..||.++.+..+...+++...+ ..||||
T Consensus 453 pv~y~g~R~le~~~~fi~~~a~~~~~~~~ee~~~~---~~~dEL 493 (493)
T KOG0190|consen 453 PVIYNGDRTLEDLKKFIKKSATESATPKKEEKKDE---SVKDEL 493 (493)
T ss_pred CcccCCCcchHHHHhhhccCCCccccccchhcccc---cccccC
Confidence 99999999999999999999885444333333333 889997
No 2
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=1.3e-43 Score=336.13 Aligned_cols=331 Identities=29% Similarity=0.520 Sum_probs=285.8
Q ss_pred ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCce-EEEeccHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 018164 2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQ-FVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDR 79 (360)
Q Consensus 2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~-F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~ 79 (360)
++++.++++.|+..+++.+|+|+.+.++...+.|.++| ...+.+. |+.+.+..+++.++.. .+.+.+|++.+..
T Consensus 115 ~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 190 (462)
T TIGR01130 115 EIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFFFAHSSDVAAFAKLGAF----PDSVVLFKPKDED 190 (462)
T ss_pred eecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccceEEecCCHHHHhhcCCC----CCcEEEecccccc
Confidence 57889999999999999999999888889999999999 6666666 6667788888888864 5778888876544
Q ss_pred c--cccCCCC--ChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEEEec---cchHHHHHHHHHHHHhhcC-ce
Q 018164 80 Y--TGYEETF--IMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKA---DDLKSLLEPLEDIARNFKG-KI 151 (360)
Q Consensus 80 ~--~~y~g~~--~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~---~~~~~~~~~~~~la~~~~~-~i 151 (360)
. ..|.|+. +.++|..||..+..|++.+++..++..++..+ +.+++|+... ..++++...|+++|+++++ .+
T Consensus 191 ~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i 269 (462)
T TIGR01130 191 EKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFV 269 (462)
T ss_pred cccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeE
Confidence 4 3677765 56899999999999999999999999888776 6555555433 3468999999999999997 89
Q ss_pred EEEEEeCCCcccchhHHhhcCCCCC-CCceEEEEeCCCcccccCCC-CCCHHHHHHHHHHHhcCccCCccccCCCCCCCC
Q 018164 152 MFTAVDIADEDLAKPFLTLFGLEES-KNTVVTAFDNKAISKFLLES-DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTN 229 (360)
Q Consensus 152 ~f~~vd~~~~~~~~~l~~~~gi~~~-~p~~~~~~~~~~~~~y~~~~-~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~ 229 (360)
.|+++|+..+. .+++.+|+... .|.+ ++.+..+..+|.+.+ .++.++|.+|++++++|+++|.++|+++|+...
T Consensus 270 ~f~~~d~~~~~---~~~~~~~~~~~~~P~~-vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~ 345 (462)
T TIGR01130 270 NFAVADEEDFG---RELEYFGLKAEKFPAV-AIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDE 345 (462)
T ss_pred EEEEecHHHhH---HHHHHcCCCccCCceE-EEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCC
Confidence 99999999775 89999999943 2666 566655446788866 799999999999999999999999999999888
Q ss_pred CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcC-CCCEEEEEEeCCCCCCCCCCCCCCcEEEE
Q 018164 230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG-LDNLVIAKIDASANEHPKLQVEEYPTLLF 308 (360)
Q Consensus 230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~~~~~~~~i~~~Pti~~ 308 (360)
+.|..+++++|++.+.+++++++|.||++||++|+.+.|.++++++.+++ .+++.|+++|++.|+++.+++.++||+++
T Consensus 346 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~~~i~~~Pt~~~ 425 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPFEVEGFPTIKF 425 (462)
T ss_pred CccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCCCCccccCEEEE
Confidence 89999999999999988899999999999999999999999999999987 33799999999999877799999999999
Q ss_pred EeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164 309 YPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD 341 (360)
Q Consensus 309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 341 (360)
|++|.+..+..|.|.++.+.|.+||.++++.+-
T Consensus 426 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 426 VPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred EeCCCCcCceEecCcCCHHHHHHHHHhcCCCCC
Confidence 999988668899999999999999999987654
No 3
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=5.6e-42 Score=325.66 Aligned_cols=319 Identities=22% Similarity=0.414 Sum_probs=271.9
Q ss_pred ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCc
Q 018164 2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRY 80 (360)
Q Consensus 2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~ 80 (360)
+|++.++++.+.+...++++|++.+.+++..+.|.++| ..++++.|+.+.+. +.+.+.+||+.+...
T Consensus 144 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~~~~~~------------~~~~~~~~~~~~~~~ 211 (477)
T PTZ00102 144 EVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKFFVKKHE------------GKNKIYVLHKDEEGV 211 (477)
T ss_pred eecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceEEEEcCC------------CCCcEEEEecCCCCc
Confidence 47788888888888889999999988889999999999 77788999887543 246789999765444
Q ss_pred cccCCCCChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCC
Q 018164 81 TGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIAD 160 (360)
Q Consensus 81 ~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~ 160 (360)
..|.| .+.++|..||..+..|++..++.+++..++..+.+. ++|+...++.+++.+.|+++|+++++++.|+++|+..
T Consensus 212 ~~~~~-~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~ 289 (477)
T PTZ00102 212 ELFMG-KTKEELEEFVSTESFPLFAEINAENYRRYISSGKDL-VWFCGTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQ 289 (477)
T ss_pred ccCCC-CCHHHHHHHHHHcCCCceeecCccchHHHhcCCccE-EEEecCHHHHHHHHHHHHHHHHhccCceEEEEEechh
Confidence 44444 588999999999999999999999999988877654 3333333667789999999999999999999999998
Q ss_pred cccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCC----CCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEc
Q 018164 161 EDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD----LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVV 236 (360)
Q Consensus 161 ~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~----~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~ 236 (360)
+. ..+++.+|+..+ |.+ ++.... .+|.+.+. .+.++|.+|++++++|++.++++|+++|+...+.|+.++
T Consensus 290 ~~--~~~~~~~gi~~~-P~~-~i~~~~--~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~ 363 (477)
T PTZ00102 290 FG--SHAKEHLLIEEF-PGL-AYQSPA--GRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVV 363 (477)
T ss_pred cc--hhHHHhcCcccC-ceE-EEEcCC--cccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEec
Confidence 75 237899999987 776 455432 35655443 789999999999999999999999999998888999999
Q ss_pred CccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--CCCCCCCCcEEEEEeCCCc
Q 018164 237 GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVEEYPTLLFYPAGDK 314 (360)
Q Consensus 237 ~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~Pti~~~~~g~~ 314 (360)
+++|++.+.+++++++|.||||||++|+.+.|.|+++|+.+++.+.+.++.+|++.++. ..+++.++||+++|++|++
T Consensus 364 ~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~ 443 (477)
T PTZ00102 364 GNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGER 443 (477)
T ss_pred ccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCc
Confidence 99999998888999999999999999999999999999999865579999999999954 3689999999999999977
Q ss_pred cCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164 315 ANPIKVSARSSSKNIAAFIKEQLKEKD 341 (360)
Q Consensus 315 ~~~~~~~g~~~~~~l~~~i~~~~~~~~ 341 (360)
. +++|.|.++.+.|.+||++++..+.
T Consensus 444 ~-~~~~~G~~~~~~l~~~i~~~~~~~~ 469 (477)
T PTZ00102 444 T-PIPYEGERTVEGFKEFVNKHATNPF 469 (477)
T ss_pred c-eeEecCcCCHHHHHHHHHHcCCCCc
Confidence 5 7789999999999999999997643
No 4
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-24 Score=198.98 Aligned_cols=218 Identities=25% Similarity=0.401 Sum_probs=183.6
Q ss_pred ecCccccc-ccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEE
Q 018164 106 KLTDINSA-SVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTA 183 (360)
Q Consensus 106 ~l~~~~~~-~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~ 183 (360)
.++..++. .......++++.||++| ++|+++.+.|++++..+++++.++.|||+.+. .+|+.++|.++ |++. +
T Consensus 33 ~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~---~~~~~y~i~gf-Ptl~-~ 107 (383)
T KOG0191|consen 33 ELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHK---DLCEKYGIQGF-PTLK-V 107 (383)
T ss_pred hhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhH---HHHHhcCCccC-cEEE-E
Confidence 33333443 35566778999999999 99999999999999999999999999999886 99999999999 9995 5
Q ss_pred EeCCCcccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCC-ceEEEcCccccccccccCccEEEEEeCCCChh
Q 018164 184 FDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNA-NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVT 262 (360)
Q Consensus 184 ~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~-~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~ 262 (360)
+..+ ...+.+.|..+.+.+..|+...+....... .. .|..++..+|...+.+.+.+++|.||+|||+|
T Consensus 108 f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ 176 (383)
T KOG0191|consen 108 FRPG-KKPIDYSGPRNAESLAEFLIKELEPSVKKL----------VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGH 176 (383)
T ss_pred EcCC-CceeeccCcccHHHHHHHHHHhhccccccc----------cCCceEEccccchhhhhhccCcceEEEEeccccHH
Confidence 5544 456667888999999999998775433221 12 48889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164 263 CETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 340 (360)
Q Consensus 263 c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 340 (360)
|+.+.|.|++++..+.....+.++.+||+.+ .+ ..+++.+|||+.+|+.|.. ...-|.|.|+.+.+.+|+.+..+..
T Consensus 177 ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~-~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 177 CKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE-DIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred hhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc-ccccccccccHHHHHHHHHhhcCCC
Confidence 9999999999999997545899999999865 34 3679999999999999988 3456789999999999999988764
No 5
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.93 E-value=4.7e-24 Score=176.81 Aligned_cols=178 Identities=30% Similarity=0.450 Sum_probs=151.9
Q ss_pred ecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCccccCCC-CChHHHHHHHhhccC
Q 018164 24 FKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTGYEET-FIMDKILQFLNYNKF 101 (360)
Q Consensus 24 f~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~y~g~-~~~~~l~~fi~~~~~ 101 (360)
|++.++.+.+.|.++| .+.+++.|+++.+++++++++++ .|+|++||++++.+..|+|+ ++.++|.+||..++.
T Consensus 1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~----~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 1 FPDKDSELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIK----EPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp ESTTTSHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCS----SSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred CCCcccHHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCC----CCcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 6777889999999999 77889999999999999999997 49999999988888999998 899999999999999
Q ss_pred CceeecCcccccccccCCCceEEEEEEe-c-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCC-C
Q 018164 102 PLVTKLTDINSASVHSSPIKLQVYVFAK-A-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK-N 178 (360)
Q Consensus 102 p~v~~l~~~~~~~~~~~~~~~~v~f~~~-~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~-p 178 (360)
|+|.++|.+|+..+++.+.+.+++++.. . ...+.+...++++|+++++++.|+++|+...+ ++++.+|+++.. |
T Consensus 77 P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~---~~~~~~~i~~~~~P 153 (184)
T PF13848_consen 77 PLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFP---RLLKYFGIDEDDLP 153 (184)
T ss_dssp TSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTH---HHHHHTTTTTSSSS
T ss_pred ccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhH---HHHHHcCCCCccCC
Confidence 9999999999999999988755555554 3 67888999999999999999999999999665 899999999543 5
Q ss_pred ceEEEEeCCCcc-cccCCCCCCHHHHHHHHHH
Q 018164 179 TVVTAFDNKAIS-KFLLESDLTPSNIEEFCSR 209 (360)
Q Consensus 179 ~~~~~~~~~~~~-~y~~~~~~~~~~i~~fi~~ 209 (360)
.+ ++.+..... .|.+.+.++.++|.+|+++
T Consensus 154 ~~-vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 154 AL-VIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EE-EEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EE-EEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 55 566644433 3445788999999999975
No 6
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.7e-20 Score=172.38 Aligned_cols=292 Identities=18% Similarity=0.229 Sum_probs=217.5
Q ss_pred HHhhhCCeEEEEEecCCCC---ccHHHHHHHH-hcCCCceEEEe---ccHHHHHHcCCCCCCCCCEEEEEecCCCCcccc
Q 018164 11 EFLKKYQTFVLGMFKKFEG---SDYEEFVKTA-AADNEIQFVET---SNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTGY 83 (360)
Q Consensus 11 ~~~~~~~~~vv~ff~~~~~---~~~~~f~~~a-~~~~~~~F~~~---~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~y 83 (360)
.++..+..++|-|+.++|+ +....|.++| .+++.+.++.+ .+.++|.++++. ++|++.+|+++ .....|
T Consensus 42 ~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~---gfPtl~~f~~~-~~~~~~ 117 (383)
T KOG0191|consen 42 FLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQ---GFPTLKVFRPG-KKPIDY 117 (383)
T ss_pred HhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCc---cCcEEEEEcCC-Cceeec
Confidence 4455678889999998886 6788999998 67777888774 467899999998 89999999987 667899
Q ss_pred CCCCChHHHHHHHhhccCC-------c-eeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhc--Cce
Q 018164 84 EETFIMDKILQFLNYNKFP-------L-VTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKI 151 (360)
Q Consensus 84 ~g~~~~~~l~~fi~~~~~p-------~-v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~--~~i 151 (360)
+|..+.+.+..|+.....+ . +..++..++.... .....+++.||+|| .+|+.+.+.|.++|..+. +.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v 197 (383)
T KOG0191|consen 118 SGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENV 197 (383)
T ss_pred cCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcce
Confidence 9999999999999875543 3 5566666666533 34567899999999 999999999999999996 579
Q ss_pred EEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCCc-cccCCCCCCCCC
Q 018164 152 MFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPY-LKSQPIPDNTNA 230 (360)
Q Consensus 152 ~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~-~~se~~p~~~~~ 230 (360)
.++.+||+... .++..+++..+ |++. ++..+....+.+.+.++.+.|..|+++.......+. ..+-.-+.. .
T Consensus 198 ~~~~~d~~~~~---~~~~~~~v~~~-Pt~~-~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~--~ 270 (383)
T KOG0191|consen 198 ELGKIDATVHK---SLASRLEVRGY-PTLK-LFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDT--F 270 (383)
T ss_pred EEEeeccchHH---HHhhhhcccCC-ceEE-EecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccc--c
Confidence 99999998553 88999999999 9994 555443323445788999999999999876432111 111111100 0
Q ss_pred ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHH-hcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE
Q 018164 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH-FKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL 307 (360)
Q Consensus 231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~-~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~ 307 (360)
....++.++|... .......++.|+++||++|..+.|.+...+.. ......+.+.+++|... .++ ...++.+|++.
T Consensus 271 ~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 349 (383)
T KOG0191|consen 271 SPTFLDTAEFLDS-LEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRGYPTIK 349 (383)
T ss_pred ccchhhhhhhhhh-hHHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeeccccccccchhhHhhhhcCceeE
Confidence 0011111222221 23455789999999999999999999999988 22333789999999887 433 45788999999
Q ss_pred EEeCCCc
Q 018164 308 FYPAGDK 314 (360)
Q Consensus 308 ~~~~g~~ 314 (360)
++..|..
T Consensus 350 ~~~~~~~ 356 (383)
T KOG0191|consen 350 LYNYGKN 356 (383)
T ss_pred eeccccc
Confidence 9987765
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.86 E-value=4e-21 Score=143.68 Aligned_cols=101 Identities=14% Similarity=0.266 Sum_probs=90.5
Q ss_pred CCceEEEcCcccccc--ccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC--CCCCCCC
Q 018164 229 NANVQIVVGKTFDDL--VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP--KLQVEEY 303 (360)
Q Consensus 229 ~~~v~~l~~~~~~~~--~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~--~~~i~~~ 303 (360)
.+.|..++..+|++. +.++++.++|.||||||++|+.+.|.|+++|+.+++ .+.|++|||+.+ ++. +++|.++
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCccc
Confidence 456899999999987 357889999999999999999999999999999986 699999999988 453 6899999
Q ss_pred cEEEEEeCCCccCceEecCCCCHHHHHHHH
Q 018164 304 PTLLFYPAGDKANPIKVSARSSSKNIAAFI 333 (360)
Q Consensus 304 Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i 333 (360)
||+++|++|.. +.+|.|.++.+.|..|+
T Consensus 86 PTl~lf~~g~~--~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSRG--PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCcc--ceEEeCCCCHHHHHhhC
Confidence 99999998876 67999999999999874
No 8
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.83 E-value=2.3e-19 Score=151.56 Aligned_cols=185 Identities=14% Similarity=0.127 Sum_probs=135.4
Q ss_pred eEEEEEE---ec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCC
Q 018164 122 LQVYVFA---KA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES 196 (360)
Q Consensus 122 ~~v~f~~---~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~ 196 (360)
.+++|++ +| ++|+.+.+.++++++++.+ ++.++.+|.+... .+++.|||.+. |+++ ++.++......+.|
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~---~l~~~~~V~~~-Pt~~-~f~~g~~~~~~~~G 96 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK---EEAEKYGVERV-PTTI-ILEEGKDGGIRYTG 96 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH---HHHHHcCCCcc-CEEE-EEeCCeeeEEEEee
Confidence 3566778 88 9999999999999999953 2445556655654 99999999999 9995 54444332234578
Q ss_pred CCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCcc-EEEEEeCCCChhhHHHHHHHHHHHH
Q 018164 197 DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKD-VLLEVYTPWCVTCETTSKQIEKLAK 275 (360)
Q Consensus 197 ~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~la~ 275 (360)
..+.+.+..|++.+++- ... ...++..+.+.+ ...+++ .++.||++||++|+.+.+.+++++.
T Consensus 97 ~~~~~~l~~~i~~~~~~--~~~-------------~~~L~~~~~~~l-~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~ 160 (215)
T TIGR02187 97 IPAGYEFAALIEDIVRV--SQG-------------EPGLSEKTVELL-QSLDEPVRIEVFVTPTCPYCPYAVLMAHKFAL 160 (215)
T ss_pred cCCHHHHHHHHHHHHHh--cCC-------------CCCCCHHHHHHH-HhcCCCcEEEEEECCCCCCcHHHHHHHHHHHH
Confidence 88889999999988631 100 012222333332 233445 4555999999999999999999988
Q ss_pred HhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 018164 276 HFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 335 (360)
Q Consensus 276 ~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~ 335 (360)
.. + ++.+..+|.+.+ ++ .+++|.++||++++.+|. .+.|..+.+.|.+||.+
T Consensus 161 ~~-~--~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~-----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 161 AN-D--KILGEMIEANENPDLAEKYGVMSVPKIVINKGVE-----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred hc-C--ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE-----EEECCCCHHHHHHHHHh
Confidence 74 3 789999999888 44 478999999999986552 38899999999999875
No 9
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.7e-20 Score=141.38 Aligned_cols=104 Identities=25% Similarity=0.531 Sum_probs=95.6
Q ss_pred ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEE
Q 018164 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF 308 (360)
Q Consensus 231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~ 308 (360)
.+..++..+|++.|.+++.||+|.|||+||++|+.+.|.+++++..+.+ .++++++|.+.+ ++. +|+|.++||+++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEE
Confidence 4566778899999999999999999999999999999999999999988 899999999998 775 799999999999
Q ss_pred EeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164 309 YPAGDKANPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
|++|.+.. ++.|..+.+.|.+||++.+.
T Consensus 122 fknGe~~d--~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVD--RFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCEEee--eecccCCHHHHHHHHHHHhc
Confidence 99998864 88999999999999998764
No 10
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.82 E-value=8.8e-20 Score=136.38 Aligned_cols=103 Identities=50% Similarity=0.941 Sum_probs=92.6
Q ss_pred ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC-CCCCCCCcEEEEE
Q 018164 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP-KLQVEEYPTLLFY 309 (360)
Q Consensus 231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~-~~~i~~~Pti~~~ 309 (360)
+|..|++++|++.+.+.+++++|+||++||++|+.+.|.|+++++.+++..++.++.+|++.+++. .+++.++|++++|
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFF 80 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEE
Confidence 478999999999987778999999999999999999999999999998755799999999998665 5688999999999
Q ss_pred eCCCccCceEecCCCCHHHHHHHH
Q 018164 310 PAGDKANPIKVSARSSSKNIAAFI 333 (360)
Q Consensus 310 ~~g~~~~~~~~~g~~~~~~l~~~i 333 (360)
++|.+..+.+|.|.++.+.|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 999844577899999999999986
No 11
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.81 E-value=1.1e-19 Score=135.81 Aligned_cols=100 Identities=25% Similarity=0.541 Sum_probs=88.9
Q ss_pred ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEE
Q 018164 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF 308 (360)
Q Consensus 231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~ 308 (360)
.|..++.++|++.+.+++++++|.||++||++|+.+.|.|+++++.+.+ .+.|+++||+.+ ++. +++|.++||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 4678889999999888888999999999999999999999999999976 799999999998 554 689999999999
Q ss_pred EeCCCccCceEecCCCC-HHHHHHHH
Q 018164 309 YPAGDKANPIKVSARSS-SKNIAAFI 333 (360)
Q Consensus 309 ~~~g~~~~~~~~~g~~~-~~~l~~~i 333 (360)
|++|+.. ..+|.|..+ .++|.+||
T Consensus 80 ~~~g~~~-~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASK-YHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCCC-ceEccCCCCCHHHHHhhC
Confidence 9998443 678999887 99999885
No 12
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.80 E-value=1.8e-19 Score=133.72 Aligned_cols=97 Identities=24% Similarity=0.468 Sum_probs=86.7
Q ss_pred ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEE
Q 018164 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 308 (360)
Q Consensus 231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~ 308 (360)
.|..++.++|++.+ ..+++++|+||++||++|+.+.|.|+++|+.+++ .+.|+++||+.+ .+ .+++|.++||+++
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 36788999999988 5568999999999999999999999999999987 699999999998 54 4789999999999
Q ss_pred EeCCCccCceEecCCCCHHHHHHH
Q 018164 309 YPAGDKANPIKVSARSSSKNIAAF 332 (360)
Q Consensus 309 ~~~g~~~~~~~~~g~~~~~~l~~~ 332 (360)
|++|.. ..+|.|.++.+.|.+|
T Consensus 79 ~~~g~~--~~~~~G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGMN--PEKYYGDRSKESLVKF 100 (101)
T ss_pred EcCCCC--cccCCCCCCHHHHHhh
Confidence 999876 4589999999999887
No 13
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.80 E-value=1e-17 Score=142.93 Aligned_cols=210 Identities=20% Similarity=0.290 Sum_probs=150.1
Q ss_pred cCCHHHHHHHhh-hCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCc
Q 018164 3 TNTVNEAEEFLK-KYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRY 80 (360)
Q Consensus 3 i~s~~~~~~~~~-~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~ 80 (360)
|++..+++.|-+ ...+-|||||++.+++.+++|.++| ..++.++|+.|.++.+|+++++. ...|-+|+|+.+.+
T Consensus 151 In~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFfAtfd~~vAk~L~lK----~nev~fyepF~~~p 226 (383)
T PF01216_consen 151 INNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFFATFDKKVAKKLGLK----LNEVDFYEPFMDEP 226 (383)
T ss_dssp E-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEEEE-SHHHHHHHT-S----TT-EEEE-TTSSSE
T ss_pred hcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHHhhcCceeEEEEecchhhhhcCcc----ccceeeeccccCCC
Confidence 788899999988 4589999999999999999999999 77799999999999999999984 78899999998888
Q ss_pred cccCC-CCChHHHHHHHhhccCCceeecCcccccccccCC-CceEEEEEEec--cchHHHHHHHHHHHHhhcC--ceEEE
Q 018164 81 TGYEE-TFIMDKILQFLNYNKFPLVTKLTDINSASVHSSP-IKLQVYVFAKA--DDLKSLLEPLEDIARNFKG--KIMFT 154 (360)
Q Consensus 81 ~~y~g-~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~-~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~--~i~f~ 154 (360)
+...| +.+.++|..||..|..|..+.++++++-...... ....+..|+.. ++..++...++++|+.... .+.++
T Consensus 227 i~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~Lsiv 306 (383)
T PF01216_consen 227 ITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIV 306 (383)
T ss_dssp EEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EE
T ss_pred ccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEE
Confidence 88875 4688999999999999999999999965544332 23456666666 6778899999999998874 59999
Q ss_pred EEeCCCcccchhH-HhhcCCCCCCCceEEEEeCCCcccccC--CC---CCCHHHHHHHHHHHhcCccCC
Q 018164 155 AVDIADEDLAKPF-LTLFGLEESKNTVVTAFDNKAISKFLL--ES---DLTPSNIEEFCSRLLHGTLTP 217 (360)
Q Consensus 155 ~vd~~~~~~~~~l-~~~~gi~~~~p~~~~~~~~~~~~~y~~--~~---~~~~~~i~~fi~~~~~g~~~~ 217 (360)
+||.+.++.-... -+-|||.-..|++ .+.+........| .+ ..|.+.+..||.++++|++.+
T Consensus 307 wIDPD~fPllv~yWE~tF~Idl~~PqI-GvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 307 WIDPDDFPLLVPYWEKTFGIDLSRPQI-GVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp EE-GGG-HHHHHHHHHHHTT-TTS-EE-EEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred EECCCCCchhHHHHHhhcCccccCCce-eEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence 9999988511111 1678999775777 7777766554444 32 258999999999999998865
No 14
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.80 E-value=3e-19 Score=133.20 Aligned_cols=101 Identities=30% Similarity=0.639 Sum_probs=93.0
Q ss_pred eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEE
Q 018164 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY 309 (360)
Q Consensus 232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~ 309 (360)
|..++.++|++.+.+++++++|+||++||++|+.+.|.|.++++.+.+ ++.|+.+|++.+ .+ .++++.++||+++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 567899999999977789999999999999999999999999999987 899999999988 44 47899999999999
Q ss_pred eCCCccCceEecCCCCHHHHHHHHHHh
Q 018164 310 PAGDKANPIKVSARSSSKNIAAFIKEQ 336 (360)
Q Consensus 310 ~~g~~~~~~~~~g~~~~~~l~~~i~~~ 336 (360)
++|... .+|.|.++.+.|.+||++|
T Consensus 79 ~~g~~~--~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEV--KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEE--EEEESSSSHHHHHHHHHHH
T ss_pred ECCcEE--EEEECCCCHHHHHHHHHcC
Confidence 999885 3899999999999999976
No 15
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.79 E-value=3.4e-19 Score=133.92 Aligned_cols=101 Identities=22% Similarity=0.433 Sum_probs=87.9
Q ss_pred ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC----CCEEEEEEeCCCC-CC-CCCCCCCCc
Q 018164 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL----DNLVIAKIDASAN-EH-PKLQVEEYP 304 (360)
Q Consensus 231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~----~~~~~~~id~~~~-~~-~~~~i~~~P 304 (360)
.|..+++++|++.+ ..+++++|.||||||++|+.+.|.|+++++.+++. .++.++.+||+.+ ++ .+++|+++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 47788999999976 67789999999999999999999999999987532 2599999999998 54 478999999
Q ss_pred EEEEEeCCCccCceEecCCCCHHHHHHHH
Q 018164 305 TLLFYPAGDKANPIKVSARSSSKNIAAFI 333 (360)
Q Consensus 305 ti~~~~~g~~~~~~~~~g~~~~~~l~~~i 333 (360)
|+++|++|... ...|.|.++.++|.+||
T Consensus 81 tl~~~~~g~~~-~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMM-KREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCc-ceecCCCCCHHHHHhhC
Confidence 99999999753 46899999999999986
No 16
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.79 E-value=1e-16 Score=152.05 Aligned_cols=306 Identities=16% Similarity=0.198 Sum_probs=217.5
Q ss_pred CCHHHHHHHhhhCCeEEEEEecCCCC---ccHHHHHHHH-hcC---CCceEEEe---ccHHHHHHcCCCCCCCCCEEEEE
Q 018164 4 NTVNEAEEFLKKYQTFVLGMFKKFEG---SDYEEFVKTA-AAD---NEIQFVET---SNFEVAKVLYPDIKSTDHFLGIV 73 (360)
Q Consensus 4 ~s~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~a-~~~---~~~~F~~~---~~~~~~~~~~~~~~~~~p~i~~~ 73 (360)
-+.+.++++++++++++|.|+.++|. .....|.++| .+. +.+.|+.+ .+.++|+++++. +.|++++|
T Consensus 6 l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~---~~Pt~~~~ 82 (462)
T TIGR01130 6 LTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVS---GYPTLKIF 82 (462)
T ss_pred CCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCc---cccEEEEE
Confidence 36678888999999999999999986 4557888888 433 34788764 467899999998 89999999
Q ss_pred ecCCCCccccCCCCChHHHHHHHhhccCCceeecC-cccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceE
Q 018164 74 KSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLT-DINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIM 152 (360)
Q Consensus 74 ~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~-~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~ 152 (360)
+.+......|.|..+.+.|.+|+.....|.+.+++ .+.+..+.......+|+|+.... ......|.++|..+.....
T Consensus 83 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~--~~~~~~~~~~a~~~~~~~~ 160 (462)
T TIGR01130 83 RNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLD--SELNDTFLSVAEKLRDVYF 160 (462)
T ss_pred eCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCC--cHHHHHHHHHHHHhhhccc
Confidence 96543246889999999999999999999888886 56677777666566666665432 3556688999999988655
Q ss_pred EEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcc-cccCCCCC--CHHHHHHHHHHHhcCccCCccccCCCCCCCC
Q 018164 153 FTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAIS-KFLLESDL--TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTN 229 (360)
Q Consensus 153 f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~-~y~~~~~~--~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~ 229 (360)
+.... . .. .+...++... ++++++....... .+.+.|.. +.+.|..|+....-
T Consensus 161 ~~~~~-~-~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~----------------- 216 (462)
T TIGR01130 161 FFAHS-S-DV---AAFAKLGAFP--DSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESL----------------- 216 (462)
T ss_pred eEEec-C-CH---HHHhhcCCCC--CcEEEecccccccccccccCcccCCHHHHHHHHHHcCC-----------------
Confidence 43222 2 11 5567777653 4443333322222 13445554 66899999988542
Q ss_pred CceEEEcCccccccccccCccEEEEEe--CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCC--CC
Q 018164 230 ANVQIVVGKTFDDLVLNSHKDVLLEVY--TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVE--EY 303 (360)
Q Consensus 230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~--~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~--~~ 303 (360)
..+..++..++....... +.+++|+ ......|..+...+.++|+.+++ ..+.|+.+|+... .+ ..+++. .+
T Consensus 217 p~v~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~i~f~~~d~~~~~~~~~~~~~~~~~~ 293 (462)
T TIGR01130 217 PLVGEFTQETAAKYFESG--PLVVLYYNVDESLDPFEELRNRFLEAAKKFRG-KFVNFAVADEEDFGRELEYFGLKAEKF 293 (462)
T ss_pred CceEeeCCcchhhHhCCC--CceeEEEEecCCchHHHHHHHHHHHHHHHCCC-CeEEEEEecHHHhHHHHHHcCCCccCC
Confidence 247788888888776333 4444443 44555689999999999999985 4799999999876 33 345665 69
Q ss_pred cEEEEEeCCCccCceEecC-CCCHHHHHHHHHHhcCCCCC
Q 018164 304 PTLLFYPAGDKANPIKVSA-RSSSKNIAAFIKEQLKEKDQ 342 (360)
Q Consensus 304 Pti~~~~~g~~~~~~~~~g-~~~~~~l~~~i~~~~~~~~~ 342 (360)
|+++++..... ....+.+ ..+.+.|.+||++.++...+
T Consensus 294 P~~vi~~~~~~-~~y~~~~~~~~~~~i~~fi~~~~~g~~~ 332 (462)
T TIGR01130 294 PAVAIQDLEGN-KKYPMDQEEFSSENLEAFVKDFLDGKLK 332 (462)
T ss_pred ceEEEEeCCcc-cccCCCcCCCCHHHHHHHHHHHhcCCCC
Confidence 99999976542 2345555 79999999999998875544
No 17
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.79 E-value=5e-19 Score=133.14 Aligned_cols=106 Identities=10% Similarity=0.130 Sum_probs=92.5
Q ss_pred CCceEEEcCccccccccccCccEEEEEeCCCChh--hH--HHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCC
Q 018164 229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVT--CE--TTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEE 302 (360)
Q Consensus 229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~--c~--~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~ 302 (360)
...|..++.+||++.+.+++.++++.|+++||++ |+ .+.|.+.++|..+-...++.|+++|++.+ ++. +++|.+
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 4578899999999999999999999999999976 99 78899999998872222799999999999 664 799999
Q ss_pred CcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164 303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337 (360)
Q Consensus 303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~ 337 (360)
+||+++|++|+.+ .|.|.++.+.|.+||.+..
T Consensus 88 iPTl~lfk~G~~v---~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 EDSIYVFKDDEVI---EYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccEEEEEECCEEE---EeeCCCCHHHHHHHHHHHh
Confidence 9999999999753 5999999999999999764
No 18
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.78 E-value=9.9e-19 Score=131.84 Aligned_cols=101 Identities=30% Similarity=0.506 Sum_probs=89.4
Q ss_pred eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--C-CCC-CCCCCCCcEEE
Q 018164 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--N-EHP-KLQVEEYPTLL 307 (360)
Q Consensus 232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--~-~~~-~~~i~~~Pti~ 307 (360)
|..++.++|.+.+.+++++++|.||++||++|+.+.|.|+++++.+.+ .+.++.+||+. + ++. .+++.++||++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 678899999999988888999999999999999999999999999976 78999999998 4 343 68999999999
Q ss_pred EEeCCCc---cCceEecCCCCHHHHHHHHH
Q 018164 308 FYPAGDK---ANPIKVSARSSSKNIAAFIK 334 (360)
Q Consensus 308 ~~~~g~~---~~~~~~~g~~~~~~l~~~i~ 334 (360)
+|++|+. ..+..|.|.++.+.|.+||.
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHhC
Confidence 9999872 23578999999999999983
No 19
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.6e-16 Score=144.83 Aligned_cols=305 Identities=17% Similarity=0.176 Sum_probs=218.8
Q ss_pred CHHHHHHHhhhCCeEEEEEecCCCC---ccHHHHHHHH-hcCC---CceEE---EeccHHHHHHcCCCCCCCCCEEEEEe
Q 018164 5 TVNEAEEFLKKYQTFVLGMFKKFEG---SDYEEFVKTA-AADN---EIQFV---ETSNFEVAKVLYPDIKSTDHFLGIVK 74 (360)
Q Consensus 5 s~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~a-~~~~---~~~F~---~~~~~~~~~~~~~~~~~~~p~i~~~~ 74 (360)
+.+.++.+|..++.++|-||.++|+ .+...|.++| .+.. .+..+ .+.+.++|.+|+++ ++|++.+||
T Consensus 31 t~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~---gyPTlkiFr 107 (493)
T KOG0190|consen 31 TKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVR---GYPTLKIFR 107 (493)
T ss_pred ecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCC---CCCeEEEEe
Confidence 4567889999999999999999996 6788999999 5553 44444 46778899999998 999999999
Q ss_pred cCCCCccccCCCCChHHHHHHHhhccCCceeecCccc-ccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEE
Q 018164 75 SEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDIN-SASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMF 153 (360)
Q Consensus 75 ~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~-~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f 153 (360)
++.. ...|+|+.+.+.|..|++..+-|.+..+.... ...+.......++-||.+..... ..+...|....+.+.|
T Consensus 108 nG~~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~---~~~~~~a~~l~~d~~F 183 (493)
T KOG0190|consen 108 NGRS-AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLA---ESFFDAASKLRDDYKF 183 (493)
T ss_pred cCCc-ceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccch---HHHHHHHHhcccccee
Confidence 8654 67999999999999999999999998887544 45565554444555554442222 4566678888888999
Q ss_pred EEEeCCCcccchhHHhhcCCCCC-CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCce
Q 018164 154 TAVDIADEDLAKPFLTLFGLEES-KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANV 232 (360)
Q Consensus 154 ~~vd~~~~~~~~~l~~~~gi~~~-~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v 232 (360)
+.- ... ++...+++... .+++ +++.......+.|.|.++.+.|.+||+.... ..|
T Consensus 184 ~~t---s~~---~~~~~~~~~~~~~~~i-~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~-----------------plv 239 (493)
T KOG0190|consen 184 AHT---SDS---DVAKKLELNTEGTFPI-VLFKKFDELLVKYDGSFTPELLKKFIQENSL-----------------PLV 239 (493)
T ss_pred ecc---CcH---hHHhhccCCCCCcceE-EeccccccchhhcccccCHHHHHHHHHHhcc-----------------ccc
Confidence 832 222 67788887632 1444 4555444555566889999999999998653 235
Q ss_pred EEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C-CCCCCCC--CCcEEEE
Q 018164 233 QIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-HPKLQVE--EYPTLLF 308 (360)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~-~~~~~i~--~~Pti~~ 308 (360)
...+..++.......-..-+++|-..-|..-...++.+.++|+.+++ .+.|+.+|...+ . +..+++. +.|..++
T Consensus 240 ~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~--~l~Fi~~d~e~~~~~~~~~Gl~~~~~~~~~v 317 (493)
T KOG0190|consen 240 TEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKG--KLRFILIDPESFARVLEFFGLEEEQLPIRAV 317 (493)
T ss_pred ceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhccc--ceEEEEEChHHhhHHHHhcCcccccCCeeEE
Confidence 66666666665533334445555556677778889999999999998 899999977666 2 2345554 5673444
Q ss_pred EeCCCccCceEecCCCCHHHHHHHHHHhcCCCCC
Q 018164 309 YPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ 342 (360)
Q Consensus 309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~ 342 (360)
..++...+...=.+..+.++|..|+.+.+....+
T Consensus 318 ~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~ 351 (493)
T KOG0190|consen 318 ILNEDGSKYPLEEEELDQENIESFVKDFLDGKVK 351 (493)
T ss_pred eeccccccccCccccccHHHHHHHHHHHhcCccc
Confidence 4455444333333568888999999999886654
No 20
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.76 E-value=2e-18 Score=128.07 Aligned_cols=99 Identities=19% Similarity=0.359 Sum_probs=82.5
Q ss_pred ceEEEcCccccccccccCccEEEEEeC--CCCh---hhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-----CC-CCC-CC
Q 018164 231 NVQIVVGKTFDDLVLNSHKDVLLEVYT--PWCV---TCETTSKQIEKLAKHFKGLDNLVIAKIDAS-----AN-EHP-KL 298 (360)
Q Consensus 231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~--~~c~---~c~~~~~~~~~la~~~~~~~~~~~~~id~~-----~~-~~~-~~ 298 (360)
.+..|+..||++.| ..++.+||.||| |||+ +|+.+.|.+...+. .+.+|.|||+ .+ +++ ++
T Consensus 2 g~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 2 GCVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CeeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHh
Confidence 36789999999987 677889999999 9999 77777777666542 4899999994 44 554 78
Q ss_pred CCC--CCcEEEEEeCCCccCceEecCC-CCHHHHHHHHHHh
Q 018164 299 QVE--EYPTLLFYPAGDKANPIKVSAR-SSSKNIAAFIKEQ 336 (360)
Q Consensus 299 ~i~--~~Pti~~~~~g~~~~~~~~~g~-~~~~~l~~~i~~~ 336 (360)
+|+ +||||++|++|....|+.|.|. |+.++|.+||+++
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 9999999999864447899996 9999999999986
No 21
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.75 E-value=6.7e-18 Score=125.35 Aligned_cols=98 Identities=20% Similarity=0.427 Sum_probs=84.6
Q ss_pred ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEE
Q 018164 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 308 (360)
Q Consensus 231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~ 308 (360)
.|..+++++|++.+ . +.++|.|||+||++|+.+.|.|++++..++. .++.++.+|++.+ .+ .+++|.++||+++
T Consensus 2 ~v~~l~~~~f~~~~-~--~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVL-E--GEWMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHh-C--CCEEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 47889999999876 2 3389999999999999999999999998764 2699999999988 45 3689999999999
Q ss_pred EeCCCccCceEecCCCCHHHHHHHHHH
Q 018164 309 YPAGDKANPIKVSARSSSKNIAAFIKE 335 (360)
Q Consensus 309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~ 335 (360)
|++|.. .+|.|.++.++|.+||++
T Consensus 78 ~~~g~~---~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGVF---RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCCCE---EEecCCCCHHHHHHHHhC
Confidence 988853 589999999999999974
No 22
>PTZ00102 disulphide isomerase; Provisional
Probab=99.75 E-value=2.4e-15 Score=143.18 Aligned_cols=287 Identities=15% Similarity=0.197 Sum_probs=203.2
Q ss_pred CHHHHHHHhhhCCeEEEEEecCCCC---ccHHHHHHHH-hc---CCCceEEE---eccHHHHHHcCCCCCCCCCEEEEEe
Q 018164 5 TVNEAEEFLKKYQTFVLGMFKKFEG---SDYEEFVKTA-AA---DNEIQFVE---TSNFEVAKVLYPDIKSTDHFLGIVK 74 (360)
Q Consensus 5 s~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~a-~~---~~~~~F~~---~~~~~~~~~~~~~~~~~~p~i~~~~ 74 (360)
+.+.+++++++++.++|.|+.++|. .....|.++| .+ ..++.|+. +.+.++|+++++. +.|++.+|+
T Consensus 38 ~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~---~~Pt~~~~~ 114 (477)
T PTZ00102 38 TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVR---GYPTIKFFN 114 (477)
T ss_pred chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCC---cccEEEEEE
Confidence 4567888899899999999999986 4566788888 43 25688885 4578999999998 899999999
Q ss_pred cCCCCccccCCCCChHHHHHHHhhccCCceeecCcccccccccCCCce-EEEEEEeccchHHHHHHHHHHHHhhcCceEE
Q 018164 75 SEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKL-QVYVFAKADDLKSLLEPLEDIARNFKGKIMF 153 (360)
Q Consensus 75 ~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~-~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f 153 (360)
.+. ...|.|..+.+.|.+|+.....|.+.+++...-.......... ++..+... .......+.++|..+++...|
T Consensus 115 ~g~--~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~~a~~~~~~~~F 190 (477)
T PTZ00102 115 KGN--PVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSK--DSELYKKFEEVADKHREHAKF 190 (477)
T ss_pred CCc--eEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccC--CcHHHHHHHHHHHhccccceE
Confidence 754 3389999999999999999999999998876543333233332 23333322 245667889999999887777
Q ss_pred EEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceE
Q 018164 154 TAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQ 233 (360)
Q Consensus 154 ~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~ 233 (360)
+.+.... . +.+.++.... ....+.+..+.++|.+||+...- ..+.
T Consensus 191 ~~~~~~~---------------~-~~~~~~~~~~--~~~~~~~~~~~~~l~~fI~~~~~-----------------P~~~ 235 (477)
T PTZ00102 191 FVKKHEG---------------K-NKIYVLHKDE--EGVELFMGKTKEELEEFVSTESF-----------------PLFA 235 (477)
T ss_pred EEEcCCC---------------C-CcEEEEecCC--CCcccCCCCCHHHHHHHHHHcCC-----------------Ccee
Confidence 6543211 1 3443443322 22222244688999999987421 2477
Q ss_pred EEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--C-CCCCCCCCcEEEEEe
Q 018164 234 IVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--H-PKLQVEEYPTLLFYP 310 (360)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~-~~~~i~~~Pti~~~~ 310 (360)
.++..++.... .++.++++++. -|..+..+.+.++++|+.+++ ++.|+.+|++... + ..+++..+|++++..
T Consensus 236 ~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~--~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~ 310 (477)
T PTZ00102 236 EINAENYRRYI-SSGKDLVWFCG--TTEDYDKYKSVVRKVARKLRE--KYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQS 310 (477)
T ss_pred ecCccchHHHh-cCCccEEEEec--CHHHHHHHHHHHHHHHHhccC--ceEEEEEechhcchhHHHhcCcccCceEEEEc
Confidence 88888887765 44555443332 355666788999999999988 7999999999873 2 367899999998876
Q ss_pred CCCccCceEecC----CCCHHHHHHHHHHhcCCCC
Q 018164 311 AGDKANPIKVSA----RSSSKNIAAFIKEQLKEKD 341 (360)
Q Consensus 311 ~g~~~~~~~~~g----~~~~~~l~~~i~~~~~~~~ 341 (360)
.+.+ ..+.+ .++.+.|.+|+++..+...
T Consensus 311 ~~~~---y~~~~~~~~~~~~~~l~~Fv~~~~~gk~ 342 (477)
T PTZ00102 311 PAGR---YLLPPAKESFDSVEALIEFFKDVEAGKV 342 (477)
T ss_pred CCcc---cCCCccccccCCHHHHHHHHHHHhCCCC
Confidence 4332 22333 3789999999999887543
No 23
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.75 E-value=8e-18 Score=126.51 Aligned_cols=101 Identities=28% Similarity=0.642 Sum_probs=86.8
Q ss_pred ceEEEcCcccccccc--ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CCC--CCCCCCCc
Q 018164 231 NVQIVVGKTFDDLVL--NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHP--KLQVEEYP 304 (360)
Q Consensus 231 ~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~~--~~~i~~~P 304 (360)
.|..++.++|+.++. +++++++|.||++||++|+.+.|.|.++++.+++ .++.++.+|++.+ .+. .+++.++|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 367888899999884 4578999999999999999999999999999985 2699999999983 443 47999999
Q ss_pred EEEEEeCCCccCceEecCC-CCHHHHHHHH
Q 018164 305 TLLFYPAGDKANPIKVSAR-SSSKNIAAFI 333 (360)
Q Consensus 305 ti~~~~~g~~~~~~~~~g~-~~~~~l~~~i 333 (360)
|+++|++|.. .+..|.|. ++.++|++||
T Consensus 81 ti~~f~~~~~-~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSR-QPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCC-CceeccCCCCCHHHHHhhC
Confidence 9999988865 37899994 8999999986
No 24
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.74 E-value=9.1e-18 Score=125.20 Aligned_cols=99 Identities=29% Similarity=0.530 Sum_probs=88.7
Q ss_pred eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEE
Q 018164 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY 309 (360)
Q Consensus 232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~ 309 (360)
|..+++.+|.+.+.+..++++|+||++||++|+.+.|.|.++++.+.+ .+.++.+|++.+ .+ ..+++.++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 567888999998877777899999999999999999999999999986 799999999988 45 47899999999999
Q ss_pred eCCCccCceEecCCCCHHHHHHHH
Q 018164 310 PAGDKANPIKVSARSSSKNIAAFI 333 (360)
Q Consensus 310 ~~g~~~~~~~~~g~~~~~~l~~~i 333 (360)
++|.. .+..|.|.++.++|.+|+
T Consensus 80 ~~~~~-~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKN-SPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCc-ceeecCCCCCHHHHHHHh
Confidence 98844 478999999999999997
No 25
>PRK09381 trxA thioredoxin; Provisional
Probab=99.73 E-value=3.6e-17 Score=123.20 Aligned_cols=104 Identities=24% Similarity=0.560 Sum_probs=92.3
Q ss_pred CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164 230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL 307 (360)
Q Consensus 230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~ 307 (360)
..|..+++.+|.+.+.+.+++++|.||++||++|+.+.|.|+++++.+.+ ++.++.+|++.+ .+ .++++.++||++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 45788999999988777889999999999999999999999999999986 799999999988 44 468999999999
Q ss_pred EEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164 308 FYPAGDKANPIKVSARSSSKNIAAFIKEQL 337 (360)
Q Consensus 308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~ 337 (360)
+|++|... .++.|..+.+.|..||.+++
T Consensus 81 ~~~~G~~~--~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVA--ATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCeEE--EEecCCCCHHHHHHHHHHhc
Confidence 99988664 47889999999999999875
No 26
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.73 E-value=2e-17 Score=123.05 Aligned_cols=98 Identities=29% Similarity=0.577 Sum_probs=85.2
Q ss_pred eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcC-CCCEEEEEEeCCCC-CC-CCCCCCCCcEEEE
Q 018164 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG-LDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 308 (360)
Q Consensus 232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~ 308 (360)
|..+++++|++.+.+ ++++|.||++||++|+.+.|.|.++++.+++ ...+.++.+||+.+ .+ ..+++.++||+++
T Consensus 2 ~~~l~~~~f~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE--GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 567889999998843 3599999999999999999999999999976 34799999999988 44 4789999999999
Q ss_pred EeCCCccCceEecCCCCHHHHHHHH
Q 018164 309 YPAGDKANPIKVSARSSSKNIAAFI 333 (360)
Q Consensus 309 ~~~g~~~~~~~~~g~~~~~~l~~~i 333 (360)
|++|.. ..+|.|.++.+.|.+||
T Consensus 80 ~~~g~~--~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEK--VDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCe--eeEeeCCCCHHHHHhhC
Confidence 998875 45899999999999885
No 27
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.1e-17 Score=139.27 Aligned_cols=106 Identities=24% Similarity=0.537 Sum_probs=96.8
Q ss_pred CceEEEcCcccccccccc--CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcE
Q 018164 230 ANVQIVVGKTFDDLVLNS--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPT 305 (360)
Q Consensus 230 ~~v~~l~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pt 305 (360)
..|..+|..||.+.|... ..||+|+||+|||++|+.+.|.+++++..++| .+.+++|||+.+ ++. .|+|.++||
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCe
Confidence 348999999999999544 45999999999999999999999999999999 899999999999 775 789999999
Q ss_pred EEEEeCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164 306 LLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339 (360)
Q Consensus 306 i~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~ 339 (360)
++.|.+|..+. .|.|....+.+.+||.+++..
T Consensus 101 V~af~dGqpVd--gF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 101 VYAFKDGQPVD--GFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEEeeCCcCcc--ccCCCCcHHHHHHHHHHhcCh
Confidence 99999998864 789999999999999999886
No 28
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.72 E-value=2.6e-17 Score=137.68 Aligned_cols=108 Identities=27% Similarity=0.539 Sum_probs=92.7
Q ss_pred CCceEEEcCcccccccccc----CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCC
Q 018164 229 NANVQIVVGKTFDDLVLNS----HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEE 302 (360)
Q Consensus 229 ~~~v~~l~~~~~~~~~~~~----~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~ 302 (360)
...|..++.++|++.+..+ .++++|.||+|||++|+.+.|.|+++++.+++ .+.++.+|++.+ ++ .+++|.+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCc
Confidence 3568999999999987543 57999999999999999999999999999987 799999999998 55 4789999
Q ss_pred CcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164 303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 340 (360)
Q Consensus 303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 340 (360)
+||+++|++|... ..+.|.++.++|.+|+.+.....
T Consensus 107 ~PTl~~f~~G~~v--~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 107 YPTLLLFDKGKMY--QYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred CCEEEEEECCEEE--EeeCCCCCHHHHHHHHHHHHHhh
Confidence 9999999988653 23458899999999999887544
No 29
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.72 E-value=4.8e-17 Score=121.71 Aligned_cols=101 Identities=38% Similarity=0.719 Sum_probs=88.3
Q ss_pred eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-C-CCC-CCCCCCCcEEEE
Q 018164 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-N-EHP-KLQVEEYPTLLF 308 (360)
Q Consensus 232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-~-~~~-~~~i~~~Pti~~ 308 (360)
|..+++++|++.+.++.++++|+||++||++|+.+.|.|.++++.++...++.++.+|++. + .+. ++++.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 5678889999988667779999999999999999999999999999744479999999999 6 454 689999999999
Q ss_pred EeCCCccCceEecCCCCHHHHHHHH
Q 018164 309 YPAGDKANPIKVSARSSSKNIAAFI 333 (360)
Q Consensus 309 ~~~g~~~~~~~~~g~~~~~~l~~~i 333 (360)
|..|... ...|.|.++.+.|.+||
T Consensus 82 ~~~~~~~-~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTE-PVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCC-ccccCCccCHHHHHhhC
Confidence 9888543 67899999999999986
No 30
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.72 E-value=3.3e-17 Score=120.40 Aligned_cols=92 Identities=18% Similarity=0.445 Sum_probs=80.6
Q ss_pred ccccccccc-CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCcc
Q 018164 239 TFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKA 315 (360)
Q Consensus 239 ~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~ 315 (360)
+|++.+.++ +++++|.||++||++|+.+.|.+++++..+.+ .+.++.+|++.+ .+ .++++.++|++++|++|+..
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 677777555 67999999999999999999999999999976 699999999998 55 47899999999999988664
Q ss_pred CceEecCCCCHHHHHHHHH
Q 018164 316 NPIKVSARSSSKNIAAFIK 334 (360)
Q Consensus 316 ~~~~~~g~~~~~~l~~~i~ 334 (360)
.++.|..+.+.|..||+
T Consensus 80 --~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 80 --DGFQGAQPEEQLRQMLD 96 (96)
T ss_pred --eeecCCCCHHHHHHHhC
Confidence 47999999999999874
No 31
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.71 E-value=2.3e-17 Score=124.20 Aligned_cols=98 Identities=14% Similarity=0.352 Sum_probs=83.1
Q ss_pred EcCccccccccc--cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEe
Q 018164 235 VVGKTFDDLVLN--SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYP 310 (360)
Q Consensus 235 l~~~~~~~~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~ 310 (360)
++.++|.+.+.. .+++++|.||+|||++|+.+.|.|+++++.+.+. ++.++++|++.+ .+ ..++|.++||+++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 9 LTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 455677765543 5789999999999999999999999999999753 689999999987 44 468999999999999
Q ss_pred CCCccCceEecCCCCHHHHHHHHHH
Q 018164 311 AGDKANPIKVSARSSSKNIAAFIKE 335 (360)
Q Consensus 311 ~g~~~~~~~~~g~~~~~~l~~~i~~ 335 (360)
+|+. ..++.|..+.+.|.+||.+
T Consensus 88 ~g~~--~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 88 NGQV--TFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CCEE--EEEecCCCCHHHHHHHHhc
Confidence 8865 3567899999999999975
No 32
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.71 E-value=3.6e-17 Score=121.70 Aligned_cols=100 Identities=40% Similarity=0.803 Sum_probs=88.4
Q ss_pred EcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCC
Q 018164 235 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAG 312 (360)
Q Consensus 235 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g 312 (360)
|++++|++.+. ++++++|+||++||+.|+.+.+.|++++..+++..++.++.+|++.+ .+ .++++.++|++++|+.|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 45678888875 78899999999999999999999999999998755699999999988 55 47899999999999998
Q ss_pred CccCceEecCCCCHHHHHHHHHHhc
Q 018164 313 DKANPIKVSARSSSKNIAAFIKEQL 337 (360)
Q Consensus 313 ~~~~~~~~~g~~~~~~l~~~i~~~~ 337 (360)
+. +..|.|..+.+.|..||.+++
T Consensus 80 ~~--~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KK--PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred Cc--ceeecCCCCHHHHHHHHHhcC
Confidence 76 578999999999999998763
No 33
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.70 E-value=7.2e-17 Score=118.89 Aligned_cols=82 Identities=18% Similarity=0.387 Sum_probs=72.3
Q ss_pred ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-CC-CC-CCCCCCCCcEEEEEeCCCccCceEecC
Q 018164 246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSA 322 (360)
Q Consensus 246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g 322 (360)
..+++++|.|||+||++|+.+.|.|+++++.+++ +.++.+|++ .+ ++ ..++|.++||+++|++| . ..+|.|
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~--~~~~~G 89 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-P--RVRYNG 89 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-c--eeEecC
Confidence 4578999999999999999999999999999964 788999998 55 44 47899999999999988 4 568999
Q ss_pred CCCHHHHHHHH
Q 018164 323 RSSSKNIAAFI 333 (360)
Q Consensus 323 ~~~~~~l~~~i 333 (360)
.++.+.|.+||
T Consensus 90 ~~~~~~l~~f~ 100 (100)
T cd02999 90 TRTLDSLAAFY 100 (100)
T ss_pred CCCHHHHHhhC
Confidence 99999999986
No 34
>PHA02278 thioredoxin-like protein
Probab=99.68 E-value=9.7e-17 Score=118.04 Aligned_cols=90 Identities=16% Similarity=0.257 Sum_probs=75.5
Q ss_pred ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-----C-CCCCCCCCcEEEEEeC
Q 018164 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----H-PKLQVEEYPTLLFYPA 311 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----~-~~~~i~~~Pti~~~~~ 311 (360)
++|.+.+ .++++++|.|||+||++|+.+.|.++++++.+.. ++.|+.+|++.+. + ..++|.++||+++|++
T Consensus 5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 4567766 5789999999999999999999999999988654 5678999998752 2 3689999999999999
Q ss_pred CCccCceEecCCCCHHHHHHH
Q 018164 312 GDKANPIKVSARSSSKNIAAF 332 (360)
Q Consensus 312 g~~~~~~~~~g~~~~~~l~~~ 332 (360)
|+.+ -++.|..+.+.|.++
T Consensus 82 G~~v--~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLV--KKYEDQVTPMQLQEL 100 (103)
T ss_pred CEEE--EEEeCCCCHHHHHhh
Confidence 9775 378898888888765
No 35
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.67 E-value=1e-16 Score=118.65 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=69.0
Q ss_pred cccccccc-ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCc
Q 018164 238 KTFDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDK 314 (360)
Q Consensus 238 ~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~ 314 (360)
++|++.+. +.+++++|.|||+||++|+.|.|.+++++..+.+ .+.|+++|++.+ ++. .++|.+.||+++|++|+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence 45666664 3577999999999999999999999999999976 689999999999 564 789999999999999988
Q ss_pred cCceEecC
Q 018164 315 ANPIKVSA 322 (360)
Q Consensus 315 ~~~~~~~g 322 (360)
+. +..|
T Consensus 81 v~--~~~G 86 (114)
T cd02954 81 MK--IDLG 86 (114)
T ss_pred EE--EEcC
Confidence 64 4444
No 36
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.67 E-value=4.6e-16 Score=117.54 Aligned_cols=102 Identities=23% Similarity=0.453 Sum_probs=84.1
Q ss_pred ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCC-CEEEEEEeCCCC---CC-CCCCCCCCcE
Q 018164 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN---EH-PKLQVEEYPT 305 (360)
Q Consensus 231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~-~~~~~~id~~~~---~~-~~~~i~~~Pt 305 (360)
++..+++++|++.+.++.++++|.||++||++|+.+.|.|++++..+++.. .+.++.+||+.. ++ .++++.++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 578899999999998878899999999999999999999999999986532 599999998753 33 3689999999
Q ss_pred EEEEeCCCccCc--eEecCC-CCHHHHHHH
Q 018164 306 LLFYPAGDKANP--IKVSAR-SSSKNIAAF 332 (360)
Q Consensus 306 i~~~~~g~~~~~--~~~~g~-~~~~~l~~~ 332 (360)
+++|+.|.+..+ ..|.|. +..+++..-
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELREA 111 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHHHH
Confidence 999999876433 567775 777776543
No 37
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.67 E-value=3.9e-16 Score=116.52 Aligned_cols=99 Identities=23% Similarity=0.498 Sum_probs=85.1
Q ss_pred eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--C-CC-CCCCCCCCcEEE
Q 018164 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--N-EH-PKLQVEEYPTLL 307 (360)
Q Consensus 232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--~-~~-~~~~i~~~Pti~ 307 (360)
|..++..+|++.+ .++++++|.||++||++|+.+.|.+.++++.+.+...+.++.+|++. + .+ ..+++.++||++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 5678888999887 55669999999999999999999999999999743479999999998 4 33 367999999999
Q ss_pred EEeCCCccCceEecCCCCHHHHHHHH
Q 018164 308 FYPAGDKANPIKVSARSSSKNIAAFI 333 (360)
Q Consensus 308 ~~~~g~~~~~~~~~g~~~~~~l~~~i 333 (360)
+|++|+. ..+|.|..+.+.+.+||
T Consensus 81 ~~~~g~~--~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKF--VEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCe--eEEeCCCCCHHHHHhhC
Confidence 9998875 45899999999999885
No 38
>PRK10996 thioredoxin 2; Provisional
Probab=99.66 E-value=5.5e-16 Score=121.42 Aligned_cols=103 Identities=20% Similarity=0.499 Sum_probs=89.6
Q ss_pred CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164 230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL 307 (360)
Q Consensus 230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~ 307 (360)
+.+..++..+|++.+ +.+++++|.||++||++|+.+.|.+.++++.+.+ ++.++.+|++.+ ++ .+++|.++|+++
T Consensus 35 ~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptli 111 (139)
T PRK10996 35 GEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTIM 111 (139)
T ss_pred CCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence 446667888999876 5689999999999999999999999999999876 799999999988 55 478999999999
Q ss_pred EEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164 308 FYPAGDKANPIKVSARSSSKNIAAFIKEQL 337 (360)
Q Consensus 308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~ 337 (360)
+|++|+.. .++.|..+.+.|.+||++.+
T Consensus 112 i~~~G~~v--~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 112 IFKNGQVV--DMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEECCEEE--EEEcCCCCHHHHHHHHHHhC
Confidence 99988764 47889999999999999763
No 39
>PLN02309 5'-adenylylsulfate reductase
Probab=99.66 E-value=4.2e-16 Score=143.10 Aligned_cols=106 Identities=26% Similarity=0.583 Sum_probs=92.4
Q ss_pred CCceEEEcCcccccccc--ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-CC-CCC--CCCCCC
Q 018164 229 NANVQIVVGKTFDDLVL--NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EHP--KLQVEE 302 (360)
Q Consensus 229 ~~~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~-~~~--~~~i~~ 302 (360)
...|..++.++|++.+. +.+++++|.||+|||++|+.|.|.|+++++.+.+. ++.|+.+|++ .+ ++. .++|.+
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCce
Confidence 45788999999999873 57889999999999999999999999999999763 6999999999 54 444 489999
Q ss_pred CcEEEEEeCCCccCceEecC-CCCHHHHHHHHHHh
Q 018164 303 YPTLLFYPAGDKANPIKVSA-RSSSKNIAAFIKEQ 336 (360)
Q Consensus 303 ~Pti~~~~~g~~~~~~~~~g-~~~~~~l~~~i~~~ 336 (360)
+||+++|++|.. .++.|.| .++.++|+.||+..
T Consensus 423 ~PTil~f~~g~~-~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSS-RPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCC-CeeecCCCCcCHHHHHHHHHHh
Confidence 999999999976 4889985 79999999999864
No 40
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.66 E-value=5.7e-16 Score=142.24 Aligned_cols=105 Identities=25% Similarity=0.559 Sum_probs=91.3
Q ss_pred CCceEEEcCcccccccc--ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--C--CCCCCCC
Q 018164 229 NANVQIVVGKTFDDLVL--NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--H--PKLQVEE 302 (360)
Q Consensus 229 ~~~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~--~~~~i~~ 302 (360)
...|..|+.+||++.+. +.+++++|.||+|||++|+.+.|.|+++|+.+++. .+.|+.+|++.+. + ..++|.+
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence 45788999999999884 56889999999999999999999999999999763 4899999998763 3 3689999
Q ss_pred CcEEEEEeCCCccCceEec-CCCCHHHHHHHHHH
Q 018164 303 YPTLLFYPAGDKANPIKVS-ARSSSKNIAAFIKE 335 (360)
Q Consensus 303 ~Pti~~~~~g~~~~~~~~~-g~~~~~~l~~~i~~ 335 (360)
+||+++|++|.. .++.|. |.++.++|..||+-
T Consensus 429 ~PTii~Fk~g~~-~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 429 FPTILFFPKHSS-RPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred cceEEEEECCCC-CceeCCCCCCCHHHHHHHHHh
Confidence 999999999965 478897 58999999999984
No 41
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.63 E-value=1.1e-15 Score=113.31 Aligned_cols=95 Identities=20% Similarity=0.435 Sum_probs=79.0
Q ss_pred cCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcEEEEEeCCCc
Q 018164 236 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYPAGDK 314 (360)
Q Consensus 236 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pti~~~~~g~~ 314 (360)
+.++|++.+ +++++++|+|||+||++|+.+.|.+.+++..+.+ ..+.|+.+|++..++ ..++|+++||+++|++|+.
T Consensus 6 ~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 6 NQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred CHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEE
Confidence 457788876 5788999999999999999999999999999874 258899999984444 4789999999999999876
Q ss_pred cCceEecCCCCHHHHHHHHHH
Q 018164 315 ANPIKVSARSSSKNIAAFIKE 335 (360)
Q Consensus 315 ~~~~~~~g~~~~~~l~~~i~~ 335 (360)
. .+..| .+.+.+.++|.+
T Consensus 84 ~--~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 84 V--AVIRG-ANAPLLNKTITE 101 (102)
T ss_pred E--EEEec-CChHHHHHHHhh
Confidence 5 35556 488999998875
No 42
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.63 E-value=1.2e-15 Score=113.17 Aligned_cols=98 Identities=26% Similarity=0.583 Sum_probs=84.6
Q ss_pred cCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCC
Q 018164 236 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGD 313 (360)
Q Consensus 236 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~ 313 (360)
+.++|.+.+.+..++++|+||++||++|..+.+.+.++++.+.+ ++.|+.+|++.+ .+ .++++.++|++++|++|.
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 45677787766677999999999999999999999999999876 799999999988 33 478999999999999887
Q ss_pred ccCceEecCCCCHHHHHHHHHHhc
Q 018164 314 KANPIKVSARSSSKNIAAFIKEQL 337 (360)
Q Consensus 314 ~~~~~~~~g~~~~~~l~~~i~~~~ 337 (360)
.. ..+.|..+.+.|.+||++++
T Consensus 80 ~~--~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EV--DRSVGALPKAALKQLINKNL 101 (101)
T ss_pred Ee--eeecCCCCHHHHHHHHHhhC
Confidence 64 46789999999999998763
No 43
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.63 E-value=1.2e-15 Score=113.28 Aligned_cols=92 Identities=16% Similarity=0.263 Sum_probs=74.7
Q ss_pred cccccccccc-CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC----C-CCCCCCCCcEEEEEeC
Q 018164 238 KTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE----H-PKLQVEEYPTLLFYPA 311 (360)
Q Consensus 238 ~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----~-~~~~i~~~Pti~~~~~ 311 (360)
++|++.+.+. +++++|.|||+||++|+.+.|.++++++.+ . ++.|+.+|++.+. + .+++|.++||+++|++
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 4677776543 789999999999999999999999999999 3 6899999998873 2 3679999999999998
Q ss_pred CCccCceEecCCCCHHHHHHHHHH
Q 018164 312 GDKANPIKVSARSSSKNIAAFIKE 335 (360)
Q Consensus 312 g~~~~~~~~~g~~~~~~l~~~i~~ 335 (360)
|+.+ .++.| ...+.|.+-|..
T Consensus 81 G~~v--~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 81 GEKI--HEEEG-IGPDELIGDVLY 101 (103)
T ss_pred CeEE--EEEeC-CCHHHHHHHHHh
Confidence 8764 57888 455666666543
No 44
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.62 E-value=1.7e-14 Score=120.94 Aligned_cols=211 Identities=14% Similarity=0.185 Sum_probs=154.9
Q ss_pred cCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCc-
Q 018164 3 TNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRY- 80 (360)
Q Consensus 3 i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~- 80 (360)
..|.++++......+-.|||||...++..++.|.++| -+++++.|.+...... .....+ +.+ +.+|++.....
T Consensus 113 f~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V~~gD~~-~~~~~~---~~~-~~~f~pd~~~~~ 187 (375)
T KOG0912|consen 113 FESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLVGFGDLL-KPHEPP---GKN-ILVFDPDHSEPN 187 (375)
T ss_pred HHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEeeccccc-cCCCCC---CCc-eEEeCCCcCCcC
Confidence 4566777777666778999999999999999999999 7789999988775432 222222 333 66777643222
Q ss_pred cccCCCC-ChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEEEec--cchHHHHHHHH-HHHHhhcCceEEEEE
Q 018164 81 TGYEETF-IMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKA--DDLKSLLEPLE-DIARNFKGKIMFTAV 156 (360)
Q Consensus 81 ~~y~g~~-~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~--~~~~~~~~~~~-~la~~~~~~i~f~~v 156 (360)
..|.|.+ +.+.|..||+....|+|+++|-+|.+.+...+.|.+++|..+. ..-+.+..+.+ ++-.+- ..|+|...
T Consensus 188 ~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~-~~in~l~A 266 (375)
T KOG0912|consen 188 HEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILFRKKDDKESEKIFKNAIARELDDET-LAINFLTA 266 (375)
T ss_pred cccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEEecCCcccHHHHHHHHHHHHhhhhh-hccceeec
Confidence 3799987 5889999999999999999999999999999999999998876 33344444332 222222 23999999
Q ss_pred eCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccC-CCCCCHHHHHHHHHHHhcCccCCccccC
Q 018164 157 DIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL-ESDLTPSNIEEFCSRLLHGTLTPYLKSQ 222 (360)
Q Consensus 157 d~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~-~~~~~~~~i~~fi~~~~~g~~~~~~~se 222 (360)
||..+. ..+..+|=+....|+++|-.......++- +.-..+..|.+|+.+..+|++...++-.
T Consensus 267 DG~~f~---hpL~HlgKs~~DLPviaIDsF~Hmylfp~f~di~~pGkLkqFv~DL~sgklHrefH~~ 330 (375)
T KOG0912|consen 267 DGKVFK---HPLRHLGKSPDDLPVIAIDSFRHMYLFPDFNDINIPGKLKQFVADLHSGKLHREFHEG 330 (375)
T ss_pred Ccceec---chHHHhCCCcccCcEEEeeccceeeecCchhhhcCccHHHHHHHHHhCchhhHHhhcC
Confidence 999875 77888998866677766655544333321 2235678999999999999987665543
No 45
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.62 E-value=1.8e-15 Score=118.97 Aligned_cols=99 Identities=20% Similarity=0.394 Sum_probs=79.8
Q ss_pred ccCCCCCCCCCceEEEcCccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-
Q 018164 220 KSQPIPDNTNANVQIVVGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP- 296 (360)
Q Consensus 220 ~se~~p~~~~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~- 296 (360)
.+++.|+. ...|..++.++|++.+.. .+++++|.||++||++|+.+.|.|+++++.+.+. ++.|+++|++.+ ++.
T Consensus 19 ~~~~~~~~-~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~~la~ 96 (152)
T cd02962 19 APQPLYMG-PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFPNVAE 96 (152)
T ss_pred hCCCccCC-CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCHHHHH
Confidence 34444433 467888999999998743 4578999999999999999999999999998642 699999999998 554
Q ss_pred CCCCCC------CcEEEEEeCCCccCceEecC
Q 018164 297 KLQVEE------YPTLLFYPAGDKANPIKVSA 322 (360)
Q Consensus 297 ~~~i~~------~Pti~~~~~g~~~~~~~~~g 322 (360)
.++|.+ +||+++|++|+.+. ++.|
T Consensus 97 ~~~V~~~~~v~~~PT~ilf~~Gk~v~--r~~G 126 (152)
T cd02962 97 KFRVSTSPLSKQLPTIILFQGGKEVA--RRPY 126 (152)
T ss_pred HcCceecCCcCCCCEEEEEECCEEEE--EEec
Confidence 578777 99999999998763 5554
No 46
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.61 E-value=4.1e-15 Score=110.81 Aligned_cols=94 Identities=20% Similarity=0.451 Sum_probs=79.5
Q ss_pred ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCc
Q 018164 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDK 314 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~ 314 (360)
++|++. .+++.++|.||++||++|+.+.|.|+++++.+++. .++.++.+|++.+ .+ ..++|.++||+++|++| .
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~ 83 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-L 83 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-C
Confidence 677774 35779999999999999999999999999998642 2599999999887 55 46899999999999765 3
Q ss_pred cCceEecCCCCHHHHHHHHHHh
Q 018164 315 ANPIKVSARSSSKNIAAFIKEQ 336 (360)
Q Consensus 315 ~~~~~~~g~~~~~~l~~~i~~~ 336 (360)
..+|.|.++.+.|.+|+++.
T Consensus 84 --~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 --AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred --ceeecCCCCHHHHHHHHHhh
Confidence 35799999999999999864
No 47
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.61 E-value=2.5e-15 Score=113.61 Aligned_cols=88 Identities=24% Similarity=0.414 Sum_probs=75.6
Q ss_pred CceEEEcCccccccccccC--ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcEE
Q 018164 230 ANVQIVVGKTFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTL 306 (360)
Q Consensus 230 ~~v~~l~~~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pti 306 (360)
+.|..++.++|.+.+.+.+ ++++|.||+|||++|+.+.|.++++|..+. ++.|+++|++.+.+ .+++|.++||+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~~l~~~~~i~~~Pt~ 80 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKAFLVNYLDIKVLPTL 80 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhhHHHHhcCCCcCCEE
Confidence 5678898999999886653 899999999999999999999999999985 48899999998744 36899999999
Q ss_pred EEEeCCCccCceEecC
Q 018164 307 LFYPAGDKANPIKVSA 322 (360)
Q Consensus 307 ~~~~~g~~~~~~~~~g 322 (360)
++|++|+.+. ++.|
T Consensus 81 ~~f~~G~~v~--~~~G 94 (113)
T cd02957 81 LVYKNGELID--NIVG 94 (113)
T ss_pred EEEECCEEEE--EEec
Confidence 9999997753 5555
No 48
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=99.60 E-value=1.2e-14 Score=107.52 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=86.4
Q ss_pred ccCCHHHHHHHhh-hCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 018164 2 RTNTVNEAEEFLK-KYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDR 79 (360)
Q Consensus 2 ~i~s~~~~~~~~~-~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~ 79 (360)
+|+|.+++++|++ +++++|||||.+.+++.++.|.++| .+++++.|+++.++++++.+++. .|++++|+++++.
T Consensus 4 ~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~e~ 79 (102)
T cd03066 4 IINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGLK----MNEVDFYEPFMEE 79 (102)
T ss_pred EcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCCC----CCcEEEeCCCCCC
Confidence 5889999999999 9999999999998999999999999 77799999999999999998875 6999999987777
Q ss_pred cccc-CCCCChHHHHHHHhhcc
Q 018164 80 YTGY-EETFIMDKILQFLNYNK 100 (360)
Q Consensus 80 ~~~y-~g~~~~~~l~~fi~~~~ 100 (360)
...| .|..+.+.|.+||+.+.
T Consensus 80 ~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 80 PVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CcccCCCCCCHHHHHHHHHHhc
Confidence 7789 78889999999998764
No 49
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=99.60 E-value=1.2e-14 Score=106.98 Aligned_cols=94 Identities=29% Similarity=0.422 Sum_probs=86.0
Q ss_pred ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCc
Q 018164 2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRY 80 (360)
Q Consensus 2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~ 80 (360)
+|+|.+++++|++.++++|||||.+.+++.++.|.++| .+++++.|+++++++++++++++ .|++++||+.++..
T Consensus 3 ~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~ 78 (97)
T cd02981 3 ELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVK----PGSVVLFKPFEEEP 78 (97)
T ss_pred ecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCC----CCceEEeCCcccCC
Confidence 58899999999999999999999998999999999999 77789999999999999998775 68999999987778
Q ss_pred cccCCCCChHHHHHHHhhc
Q 018164 81 TGYEETFIMDKILQFLNYN 99 (360)
Q Consensus 81 ~~y~g~~~~~~l~~fi~~~ 99 (360)
..|+|..+.++|.+||..+
T Consensus 79 ~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 79 VEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred ccCCCCCCHHHHHHHHHhC
Confidence 8899999999999999854
No 50
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.60 E-value=5.9e-15 Score=108.41 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=82.1
Q ss_pred eEEEcCccccccccccCccEEEEEeCCC--ChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE
Q 018164 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPW--CVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL 307 (360)
Q Consensus 232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~--c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~ 307 (360)
...++..||++.+ ..+++++|.||++| |+.|..+.|.++++++.+.+ .+.|+++|++.+ .+. .++|.++||++
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 4468889999887 77899999999997 99999999999999999987 789999999999 554 78999999999
Q ss_pred EEeCCCccCceEecCCCCHHHHH
Q 018164 308 FYPAGDKANPIKVSARSSSKNIA 330 (360)
Q Consensus 308 ~~~~g~~~~~~~~~g~~~~~~l~ 330 (360)
+|++|+.. -++.|..+.+.+.
T Consensus 89 ~fkdGk~v--~~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRYV--GVLAGIRDWDEYV 109 (111)
T ss_pred EEECCEEE--EEEeCccCHHHHh
Confidence 99999775 3678888777664
No 51
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.60 E-value=2.5e-12 Score=110.35 Aligned_cols=305 Identities=16% Similarity=0.130 Sum_probs=193.2
Q ss_pred CHHHHHHHhhhCCeEEEEEecCCCCc--c------HHHHHHHH-hc--CCCceEEEec---cHHHHHHcCCCCCCCCCEE
Q 018164 5 TVNEAEEFLKKYQTFVLGMFKKFEGS--D------YEEFVKTA-AA--DNEIQFVETS---NFEVAKVLYPDIKSTDHFL 70 (360)
Q Consensus 5 s~~~~~~~~~~~~~~vv~ff~~~~~~--~------~~~f~~~a-~~--~~~~~F~~~~---~~~~~~~~~~~~~~~~p~i 70 (360)
|...+++.+++.++.+|.|+.+..+. . .+.+.++| +. ..++.||.+. +..+|+++|+. ..++|
T Consensus 40 neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~---E~~Si 116 (383)
T PF01216_consen 40 NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE---EEGSI 116 (383)
T ss_dssp -TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-----STTEE
T ss_pred chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc---ccCcE
Confidence 45567889999999999999877652 1 24456666 43 4789999855 67899999998 78999
Q ss_pred EEEecCCCCccccCCCCChHHHHHHHhhccCCceeecCcccccccc-c-CCCceEEEEEEeccchHHHHHHHHHHHHhhc
Q 018164 71 GIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVH-S-SPIKLQVYVFAKADDLKSLLEPLEDIARNFK 148 (360)
Q Consensus 71 ~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~-~-~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~ 148 (360)
.+|+ ++..+.|+|.++++.|..||..-.-.+|..++.+.-.+.+ + ...+.+|.+|.+. ... ....|.++|..|+
T Consensus 117 yVfk--d~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~-~s~-~yk~FeeAAe~F~ 192 (383)
T PF01216_consen 117 YVFK--DGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSE-DSE-HYKEFEEAAEHFQ 192 (383)
T ss_dssp EEEE--TTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SST-TSH-HHHHHHHHHHHCT
T ss_pred EEEE--CCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCC-CcH-HHHHHHHHHHhhc
Confidence 9999 5678899999999999999998888889888876543333 2 2245667776554 222 2347899999999
Q ss_pred CceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCC
Q 018164 149 GKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNT 228 (360)
Q Consensus 149 ~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~ 228 (360)
.-|.|..+ |.+.+++.+|++. -.+-.+-+...........+.+.+.|.+||++...
T Consensus 193 p~IkFfAt------fd~~vAk~L~lK~--nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r---------------- 248 (383)
T PF01216_consen 193 PYIKFFAT------FDKKVAKKLGLKL--NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR---------------- 248 (383)
T ss_dssp TTSEEEEE-------SHHHHHHHT-ST--T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S----------------
T ss_pred CceeEEEE------ecchhhhhcCccc--cceeeeccccCCCccCCCCCCCHHHHHHHHHHhch----------------
Confidence 99999775 2247889999872 22322333322222222345799999999999643
Q ss_pred CCceEEEcCcccccccc-ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--C----CCCCC
Q 018164 229 NANVQIVVGKTFDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--P----KLQVE 301 (360)
Q Consensus 229 ~~~v~~l~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~ 301 (360)
..++++...++-++.. +-++..+|-|.....+.-..+..++.++|+.-..++++.|++||-+.-.+ + .|+|.
T Consensus 249 -ptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Id 327 (383)
T PF01216_consen 249 -PTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGID 327 (383)
T ss_dssp --SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-
T ss_pred -hHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcc
Confidence 2467888877555442 33667888888888888889999999999998877789999999776622 1 23433
Q ss_pred -CCcEEEEEeCCCccCceEec-----CCCCHHHHHHHHHHhcCCCCC
Q 018164 302 -EYPTLLFYPAGDKANPIKVS-----ARSSSKNIAAFIKEQLKEKDQ 342 (360)
Q Consensus 302 -~~Pti~~~~~g~~~~~~~~~-----g~~~~~~l~~~i~~~~~~~~~ 342 (360)
.-|.|-+..-.... .+-+. ...+++.|..||.+.+.....
T Consensus 328 l~~PqIGvVnvtdad-svW~dm~d~~d~pt~~~LedWieDVlsg~i~ 373 (383)
T PF01216_consen 328 LSRPQIGVVNVTDAD-SVWMDMDDDDDLPTAEELEDWIEDVLSGKIN 373 (383)
T ss_dssp TTS-EEEEEETTTSE-EEEC-STTTSS---HHHHHHHHHHHHCTCCT
T ss_pred ccCCceeEEeccccc-cchhccCCcccCCcHHHHHHHHHHHhcCCCC
Confidence 13999888665443 34333 135889999999999976654
No 52
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.59 E-value=1e-15 Score=127.83 Aligned_cols=92 Identities=17% Similarity=0.449 Sum_probs=80.5
Q ss_pred ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCC-CEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCccCceEecC
Q 018164 246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSA 322 (360)
Q Consensus 246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~-~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~~~~~~~g 322 (360)
.++..|+|.||||||+||+++.|+|.+++..++... -++++++||+.. .+. +++|++||||.+|++|.- +.|.|
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a---~dYRG 117 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHA---IDYRG 117 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCee---eecCC
Confidence 356789999999999999999999999999987643 699999999998 554 799999999999987744 58999
Q ss_pred CCCHHHHHHHHHHhcCCC
Q 018164 323 RSSSKNIAAFIKEQLKEK 340 (360)
Q Consensus 323 ~~~~~~l~~~i~~~~~~~ 340 (360)
.|+.+.|+.|-.+-.+.-
T Consensus 118 ~R~Kd~iieFAhR~a~ai 135 (468)
T KOG4277|consen 118 GREKDAIIEFAHRCAAAI 135 (468)
T ss_pred CccHHHHHHHHHhcccce
Confidence 999999999998776644
No 53
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.59 E-value=4.4e-15 Score=109.94 Aligned_cols=98 Identities=39% Similarity=0.769 Sum_probs=82.4
Q ss_pred EEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeC
Q 018164 234 IVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPA 311 (360)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~ 311 (360)
.++.++|.+.+.+ +++++|+||++||++|+.+.+.|.++++.++...++.++.+|++.+ .+ ..+++.++|++++|++
T Consensus 2 ~l~~~~~~~~i~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhC-CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 3566788887744 4499999999999999999999999999995334899999999986 44 4789999999999988
Q ss_pred CCccCceEecCCCCHHHHHHHH
Q 018164 312 GDKANPIKVSARSSSKNIAAFI 333 (360)
Q Consensus 312 g~~~~~~~~~g~~~~~~l~~~i 333 (360)
|.. ...+|.|..+.+.|.+|+
T Consensus 81 ~~~-~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSK-EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCc-ccccCCCCcCHHHHHhhC
Confidence 843 367899999999999885
No 54
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=99.59 E-value=1.7e-14 Score=107.04 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=84.1
Q ss_pred ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEec-----
Q 018164 2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKS----- 75 (360)
Q Consensus 2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~----- 75 (360)
+|.|.+++++|++.++++|||||.+.+++.++.|.++| .+++++.|+++.++++++++++. |++++||+
T Consensus 4 ~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~-----~~ivl~~p~~~~~ 78 (104)
T cd03069 4 ELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEKYGYG-----EGVVLFRPPRLSN 78 (104)
T ss_pred ccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCCC-----CceEEEechhhhc
Confidence 58899999999999999999999998889999999999 77799999999999999988763 78999954
Q ss_pred -CCCCccccCCCCChHHHHHHHhhcc
Q 018164 76 -EPDRYTGYEETFIMDKILQFLNYNK 100 (360)
Q Consensus 76 -~~~~~~~y~g~~~~~~l~~fi~~~~ 100 (360)
+++....|.|+++.+.|.+||+.++
T Consensus 79 k~de~~~~y~g~~~~~~l~~fi~~~~ 104 (104)
T cd03069 79 KFEDSSVKFDGDLDSSKIKKFIRENI 104 (104)
T ss_pred ccCcccccccCcCCHHHHHHHHHhhC
Confidence 6677778999999999999998753
No 55
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.58 E-value=9.6e-15 Score=109.98 Aligned_cols=98 Identities=22% Similarity=0.392 Sum_probs=80.2
Q ss_pred CceEEEcC-ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEE
Q 018164 230 ANVQIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTL 306 (360)
Q Consensus 230 ~~v~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti 306 (360)
+.+..++. .+|.+.+ .+++.++|+||+|||++|+.+.|.++++++.+. ++.|+++|++.+ ++ .++++.++||+
T Consensus 4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~ 79 (113)
T cd02989 4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTV 79 (113)
T ss_pred CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEE
Confidence 55777877 7888887 456899999999999999999999999999885 589999999998 45 47899999999
Q ss_pred EEEeCCCccCceEecC--------CCCHHHHHHHH
Q 018164 307 LFYPAGDKANPIKVSA--------RSSSKNIAAFI 333 (360)
Q Consensus 307 ~~~~~g~~~~~~~~~g--------~~~~~~l~~~i 333 (360)
++|++|+.+. ++.| ..+.+++.+||
T Consensus 80 l~fk~G~~v~--~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 80 ILFKNGKTVD--RIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEECCEEEE--EEECccccCCCCCCCHHHHHHHh
Confidence 9999997653 3332 45566666665
No 56
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.55 E-value=2.1e-14 Score=105.50 Aligned_cols=89 Identities=21% Similarity=0.369 Sum_probs=77.5
Q ss_pred ccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceE
Q 018164 242 DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIK 319 (360)
Q Consensus 242 ~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~ 319 (360)
..+...+++++|+||++||+.|+.+.+.++++++.+.+ ++.++.+|++.+ ++ ..+++.++|++++|++|+.+ .+
T Consensus 7 ~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v--~~ 82 (97)
T cd02949 7 KLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV--KE 82 (97)
T ss_pred HHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE--EE
Confidence 44566789999999999999999999999999999976 799999999887 44 47899999999999988664 57
Q ss_pred ecCCCCHHHHHHHHH
Q 018164 320 VSARSSSKNIAAFIK 334 (360)
Q Consensus 320 ~~g~~~~~~l~~~i~ 334 (360)
+.|..+.+.|.+||+
T Consensus 83 ~~g~~~~~~~~~~l~ 97 (97)
T cd02949 83 ISGVKMKSEYREFIE 97 (97)
T ss_pred EeCCccHHHHHHhhC
Confidence 889999999998874
No 57
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.53 E-value=5e-14 Score=105.33 Aligned_cols=107 Identities=23% Similarity=0.276 Sum_probs=94.0
Q ss_pred eeecCcccccccccCCCceEEEEEEeccchHHHHHHHHHHHHh---hcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164 104 VTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARN---FKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180 (360)
Q Consensus 104 v~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~---~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~ 180 (360)
|+++|.+|...++..+.|..++|| ...+.+.+...++++|++ +++++.|+++|.+.+. ..++.||+++...|+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~---~~~~~fgl~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR---HPLLHLGKTPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh---hHHHHcCCCHhHCCE
Confidence 578999999999999999998888 446778899999999999 9999999999999885 689999999755666
Q ss_pred EEEEeCCCccccc-CCCCCCHHHHHHHHHHHhcCc
Q 018164 181 VTAFDNKAISKFL-LESDLTPSNIEEFCSRLLHGT 214 (360)
Q Consensus 181 ~~~~~~~~~~~y~-~~~~~~~~~i~~fi~~~~~g~ 214 (360)
+++.+..+..+|. +.+.++.++|.+|++++++|+
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 6787776667998 778899999999999999985
No 58
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.53 E-value=4.2e-14 Score=108.89 Aligned_cols=101 Identities=14% Similarity=0.219 Sum_probs=82.2
Q ss_pred Ccccccccc-ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE-EEeCC
Q 018164 237 GKTFDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL-FYPAG 312 (360)
Q Consensus 237 ~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~-~~~~g 312 (360)
...|++.+. ..+++++|.|||+||++|+.+.|.++++|+.+.+ .+.|+.+|++++ ++. .++|.+.|+++ +|++|
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g 88 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK 88 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence 356777775 4578999999999999999999999999999976 688999999998 665 68999776666 99999
Q ss_pred CccCceEecC--------CCCHHHHHHHHHHhcCCC
Q 018164 313 DKANPIKVSA--------RSSSKNIAAFIKEQLKEK 340 (360)
Q Consensus 313 ~~~~~~~~~g--------~~~~~~l~~~i~~~~~~~ 340 (360)
... .-+..| ..+.++|++-|.......
T Consensus 89 ~~~-vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 89 HIM-IDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred eEE-EEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 742 345667 578899999988876543
No 59
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.53 E-value=2.1e-14 Score=107.10 Aligned_cols=91 Identities=21% Similarity=0.468 Sum_probs=74.8
Q ss_pred cccccccccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCCC-----C-CCCCCCCCcEEEEE
Q 018164 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANE-----H-PKLQVEEYPTLLFY 309 (360)
Q Consensus 239 ~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~-----~-~~~~i~~~Pti~~~ 309 (360)
.|.+.+ ..+++++|+||++||++|+.+.+.+ .++++.+++ ++.++.+|++.++ + ..+++.++||+++|
T Consensus 3 ~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 3 ALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 345544 5678999999999999999999988 688888876 7999999998752 2 36799999999999
Q ss_pred eC--CCccCceEecCCCCHHHHHHHHH
Q 018164 310 PA--GDKANPIKVSARSSSKNIAAFIK 334 (360)
Q Consensus 310 ~~--g~~~~~~~~~g~~~~~~l~~~i~ 334 (360)
.. |+. +.++.|..+.+.|.++|+
T Consensus 80 ~~~~g~~--~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 80 GPGGEPE--PLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCC--CcccccccCHHHHHHHhC
Confidence 85 443 578999999999998873
No 60
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.53 E-value=7.8e-14 Score=109.49 Aligned_cols=97 Identities=14% Similarity=0.377 Sum_probs=79.6
Q ss_pred cccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC----CCCCCCCCCcEEEEEe-CCC
Q 018164 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE----HPKLQVEEYPTLLFYP-AGD 313 (360)
Q Consensus 239 ~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----~~~~~i~~~Pti~~~~-~g~ 313 (360)
.|++.+ ..+++++|.||++||++|+.+.|.+.++++.+.+ .+.|+.+|++.+. ...++|.++||+++|. +|+
T Consensus 12 ~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 12 PPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred CHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 455543 6688999999999999999999999999999976 5778888877653 2468999999999995 565
Q ss_pred ccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164 314 KANPIKVSARSSSKNIAAFIKEQLKEK 340 (360)
Q Consensus 314 ~~~~~~~~g~~~~~~l~~~i~~~~~~~ 340 (360)
.+ .++.|..+.+.|.++|.+.+...
T Consensus 89 ~v--~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 89 EE--GQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred EE--EEEeCCCCHHHHHHHHHHHHcCC
Confidence 53 47789999999999999988644
No 61
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.52 E-value=7.1e-14 Score=113.37 Aligned_cols=105 Identities=21% Similarity=0.368 Sum_probs=85.6
Q ss_pred CCceEEEcC-ccccccccccC--ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCc
Q 018164 229 NANVQIVVG-KTFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYP 304 (360)
Q Consensus 229 ~~~v~~l~~-~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P 304 (360)
-+.|..++. .+|.+.+...+ .+++|.||++||++|+.+.|.|..||..+. .+.|++||++.+.+ ..+++.++|
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~~l~~~f~v~~vP 137 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASATGASDEFDTDALP 137 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccchhhHHhCCCCCCC
Confidence 577889988 99999986544 499999999999999999999999999985 59999999998744 478999999
Q ss_pred EEEEEeCCCccCce-Eec----CCCCHHHHHHHHHHh
Q 018164 305 TLLFYPAGDKANPI-KVS----ARSSSKNIAAFIKEQ 336 (360)
Q Consensus 305 ti~~~~~g~~~~~~-~~~----g~~~~~~l~~~i~~~ 336 (360)
|+++|++|..+..+ .+. ...+.+.|..||.++
T Consensus 138 Tlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 138 ALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 99999999876322 111 256778888887653
No 62
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.52 E-value=8.6e-14 Score=104.87 Aligned_cols=91 Identities=23% Similarity=0.358 Sum_probs=78.2
Q ss_pred ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCC
Q 018164 246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSAR 323 (360)
Q Consensus 246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~ 323 (360)
..+..++|+||++||++|+.+.|.+++++..+ + .+.+..+|++.+ ++ ..+++.++||+++|++|+....++|.|.
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~ 96 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGL 96 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEec
Confidence 44667889999999999999999999999876 3 689999999987 44 4789999999999998876656789999
Q ss_pred CCHHHHHHHHHHhcCC
Q 018164 324 SSSKNIAAFIKEQLKE 339 (360)
Q Consensus 324 ~~~~~l~~~i~~~~~~ 339 (360)
.+..++.+||...+..
T Consensus 97 ~~~~el~~~i~~i~~~ 112 (113)
T cd02975 97 PAGYEFASLIEDIVRV 112 (113)
T ss_pred CchHHHHHHHHHHHhc
Confidence 9999999999987653
No 63
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.51 E-value=1.2e-13 Score=102.41 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=86.2
Q ss_pred CceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164 102 PLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180 (360)
Q Consensus 102 p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~ 180 (360)
|-+..++..+|+.....+.+++|+||++| ++|+.+.+.|.++|+++++.+.|+.+||+..+ .+|+.++|+++ |++
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~-Pt~ 76 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR---MLCRSQGVNSY-PSL 76 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH---HHHHHcCCCcc-CEE
Confidence 45778999999998877788999999999 99999999999999999999999999999875 89999999999 999
Q ss_pred EEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164 181 VTAFDNKAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi 207 (360)
+++.++. ....+.|..+.+.|.+|.
T Consensus 77 ~~~~~g~--~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 77 YVFPSGM--NPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EEEcCCC--CcccCCCCCCHHHHHhhC
Confidence 6554332 344568999999998873
No 64
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.50 E-value=6.9e-14 Score=102.90 Aligned_cols=91 Identities=25% Similarity=0.506 Sum_probs=73.5
Q ss_pred cccccccccc-CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCc
Q 018164 238 KTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDK 314 (360)
Q Consensus 238 ~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~ 314 (360)
++|++.+... ++.++|.||++||++|+.+.+.+++++..+.. ++.++.+|++.+ ++ .++++.++||+++|++|+.
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence 4566666444 58999999999999999999999999999844 899999999877 44 4789999999999998865
Q ss_pred cCceEecCCCCHHHHHHHH
Q 018164 315 ANPIKVSARSSSKNIAAFI 333 (360)
Q Consensus 315 ~~~~~~~g~~~~~~l~~~i 333 (360)
+ .++.| .+.+.|.+.|
T Consensus 81 ~--~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 81 V--DRVSG-ADPKELAKKV 96 (97)
T ss_pred E--EEEeC-CCHHHHHHhh
Confidence 4 34555 4667776665
No 65
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=7.7e-14 Score=102.62 Aligned_cols=84 Identities=26% Similarity=0.576 Sum_probs=69.0
Q ss_pred ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCC
Q 018164 246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSAR 323 (360)
Q Consensus 246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~ 323 (360)
.+++.++|.|||+|||+|+.+.|.+.+||.++. ++.|.++|++++ ++ ..+++...||+++|++|+.. ..+.|.
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~--~~~vGa 93 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEV--DEVVGA 93 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC---CCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEE--EEEecC
Confidence 346899999999999999999999999999997 489999999984 33 36799999999999999885 356664
Q ss_pred CCHHHHHHHHHH
Q 018164 324 SSSKNIAAFIKE 335 (360)
Q Consensus 324 ~~~~~l~~~i~~ 335 (360)
+...+.+.|.+
T Consensus 94 -~~~~l~~~i~~ 104 (106)
T KOG0907|consen 94 -NKAELEKKIAK 104 (106)
T ss_pred -CHHHHHHHHHh
Confidence 33466666654
No 66
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.50 E-value=3.5e-12 Score=107.15 Aligned_cols=289 Identities=9% Similarity=0.148 Sum_probs=193.2
Q ss_pred CHHHHHHHhhhCCeEEEEEecCCCC---ccHHHHHHHH-hcC-----CCceEEEec---cHHHHHHcCCCCCCCCCEEEE
Q 018164 5 TVNEAEEFLKKYQTFVLGMFKKFEG---SDYEEFVKTA-AAD-----NEIQFVETS---NFEVAKVLYPDIKSTDHFLGI 72 (360)
Q Consensus 5 s~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~a-~~~-----~~~~F~~~~---~~~~~~~~~~~~~~~~p~i~~ 72 (360)
+.+.++..++++++++|.|+.++|- .+..+|+++| +.. +.+.+|.+. ..+++.+|.+. ++|++.+
T Consensus 2 t~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~---KyPTlKv 78 (375)
T KOG0912|consen 2 TSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHIN---KYPTLKV 78 (375)
T ss_pred ccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccc---cCceeee
Confidence 3456778899999999999999995 6788999999 543 455577654 56799999998 9999999
Q ss_pred EecCCCCccccCCCCChHHHHHHHhhccCCceeecCcccc-cccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCce
Q 018164 73 VKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINS-ASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKI 151 (360)
Q Consensus 73 ~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~-~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i 151 (360)
||++.--.-.|.|..+++.|.+||.......+.++..-+- ..+...++..++.+|... +...+. .++++|.-+++..
T Consensus 79 frnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~k-dspey~-~~~kva~~lr~dc 156 (375)
T KOG0912|consen 79 FRNGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSK-DSPEYD-NLRKVASLLRDDC 156 (375)
T ss_pred eeccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccC-CCchHH-HHHHHHHHHhhcc
Confidence 9997765668999999999999999877776777765443 333332333444444323 222222 5678899898876
Q ss_pred EEEEEeCCCcccchhHHhhcCCCCCCCce-EEEEeCCCccc-ccCCCCC-CHHHHHHHHHHHhcCccCCccccCCCCCCC
Q 018164 152 MFTAVDIADEDLAKPFLTLFGLEESKNTV-VTAFDNKAISK-FLLESDL-TPSNIEEFCSRLLHGTLTPYLKSQPIPDNT 228 (360)
Q Consensus 152 ~f~~vd~~~~~~~~~l~~~~gi~~~~p~~-~~~~~~~~~~~-y~~~~~~-~~~~i~~fi~~~~~g~~~~~~~se~~p~~~ 228 (360)
.|..-=++ +... ... |.. +.++++..... ..|.|.+ +.+.+.+||++---
T Consensus 157 ~f~V~~gD-------~~~~---~~~-~~~~~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcv---------------- 209 (375)
T KOG0912|consen 157 VFLVGFGD-------LLKP---HEP-PGKNILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCV---------------- 209 (375)
T ss_pred EEEeeccc-------cccC---CCC-CCCceEEeCCCcCCcCcccccccccHHHHHHHHHhcch----------------
Confidence 66543222 1111 111 222 24565554332 2457875 78999999998432
Q ss_pred CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCC-CEEEEEEeCCCCCC------------
Q 018164 229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASANEH------------ 295 (360)
Q Consensus 229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~-~~~~~~id~~~~~~------------ 295 (360)
+.|+.+|-+|-+++. ....|.+|+|+.+......+. --..+++.+-.+. .+.+...|+..-..
T Consensus 210 -pLVREiTFeN~EELt-EEGlPflILf~~kdD~~s~k~--F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DL 285 (375)
T KOG0912|consen 210 -PLVREITFENAEELT-EEGLPFLILFRKKDDKESEKI--FKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDL 285 (375)
T ss_pred -hhhhhhhhccHHHHh-hcCCceEEEEecCCcccHHHH--HHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcccC
Confidence 258889888988875 778899999998876554432 1244555564433 36777777655422
Q ss_pred CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164 296 PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337 (360)
Q Consensus 296 ~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~ 337 (360)
+-+-|+++-.+++|+.++.+ -..| .|.+||.+.-
T Consensus 286 PviaIDsF~Hmylfp~f~di---~~pG-----kLkqFv~DL~ 319 (375)
T KOG0912|consen 286 PVIAIDSFRHMYLFPDFNDI---NIPG-----KLKQFVADLH 319 (375)
T ss_pred cEEEeeccceeeecCchhhh---cCcc-----HHHHHHHHHh
Confidence 33356778888888886553 2223 8888988754
No 67
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=99.49 E-value=2.4e-13 Score=100.92 Aligned_cols=94 Identities=17% Similarity=0.283 Sum_probs=82.8
Q ss_pred ccCCHHHHHHHhhhC-CeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEe-----
Q 018164 2 RTNTVNEAEEFLKKY-QTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVK----- 74 (360)
Q Consensus 2 ~i~s~~~~~~~~~~~-~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~----- 74 (360)
+|.|.++++.|+..+ +++|||||.+.++..++.|.++| .+++++.|+++++.++++++++. .|.+++||
T Consensus 4 ~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~----~~~vvl~rp~~~~ 79 (107)
T cd03068 4 QLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVS----PGQLVVFQPEKFQ 79 (107)
T ss_pred EcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCC----CCceEEECcHHHh
Confidence 588999999999988 99999999998888999999999 77899999999999999999885 58899995
Q ss_pred -cCCCCccccCCC-CChHH-HHHHHhhc
Q 018164 75 -SEPDRYTGYEET-FIMDK-ILQFLNYN 99 (360)
Q Consensus 75 -~~~~~~~~y~g~-~~~~~-l~~fi~~~ 99 (360)
++++....|+|. .+.++ |.+||+.|
T Consensus 80 ~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 80 SKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred hhcCcceeeeeccccchHHHHHHHHhcC
Confidence 566777889887 67666 99999864
No 68
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.49 E-value=9.4e-14 Score=114.10 Aligned_cols=102 Identities=17% Similarity=0.295 Sum_probs=84.9
Q ss_pred CCCceEEEcCccccccccccC--ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcE
Q 018164 228 TNANVQIVVGKTFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPT 305 (360)
Q Consensus 228 ~~~~v~~l~~~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pt 305 (360)
.-+.|..++..+|...+...+ ..|+|.||++||++|+.+.+.|++||..+. .++|+++|++.. ++.+++.++||
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~~-~~~~~i~~lPT 155 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQC-IPNYPDKNLPT 155 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHHh-HhhCCCCCCCE
Confidence 357899999999998776543 489999999999999999999999999985 589999999763 56889999999
Q ss_pred EEEEeCCCccCceEecC-------CCCHHHHHHHHHH
Q 018164 306 LLFYPAGDKANPIKVSA-------RSSSKNIAAFIKE 335 (360)
Q Consensus 306 i~~~~~g~~~~~~~~~g-------~~~~~~l~~~i~~ 335 (360)
+++|++|..+. ++.| ..+.+.|..+|.+
T Consensus 156 lliyk~G~~v~--~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 156 ILVYRNGDIVK--QFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEECCEEEE--EEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999998763 3333 5677888877764
No 69
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.49 E-value=2.2e-13 Score=101.96 Aligned_cols=101 Identities=9% Similarity=0.063 Sum_probs=85.3
Q ss_pred CCceeecCccccccc---ccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHH-hhcCCCC
Q 018164 101 FPLVTKLTDINSASV---HSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFL-TLFGLEE 175 (360)
Q Consensus 101 ~p~v~~l~~~~~~~~---~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~-~~~gi~~ 175 (360)
.+.|.+++..||.+. ...+..++|.||++| ++|+.+.+.|.++|+++++.+.|+.|||+... .+| +.++|.+
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~---~l~~~~~~I~~ 84 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ---GKCRKQKHFFY 84 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh---HHHHHhcCCcc
Confidence 456889999999975 567778999999999 99999999999999999998999999999775 788 5899999
Q ss_pred CCCceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164 176 SKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 176 ~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi 207 (360)
+ |+++++.++. ....|.|..+.+.|..|.
T Consensus 85 ~-PTl~lf~~g~--~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 F-PVIHLYYRSR--GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred c-CEEEEEECCc--cceEEeCCCCHHHHHhhC
Confidence 9 9996665433 234458999999998873
No 70
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.48 E-value=4.3e-12 Score=107.31 Aligned_cols=190 Identities=9% Similarity=0.006 Sum_probs=137.8
Q ss_pred HHHHHH-hh--hCCeEEEEEec---CCCC---ccHHHHHHHHhcCCCce--EEEe---ccHHHHHHcCCCCCCCCCEEEE
Q 018164 7 NEAEEF-LK--KYQTFVLGMFK---KFEG---SDYEEFVKTAAADNEIQ--FVET---SNFEVAKVLYPDIKSTDHFLGI 72 (360)
Q Consensus 7 ~~~~~~-~~--~~~~~vv~ff~---~~~~---~~~~~f~~~a~~~~~~~--F~~~---~~~~~~~~~~~~~~~~~p~i~~ 72 (360)
+++..+ .+ ++.+.++.|+. ++|+ .....+.++|+.++.+. +.-+ .+++++++|++. +.|++++
T Consensus 7 ~~~~~~~~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~---~~Pt~~~ 83 (215)
T TIGR02187 7 EILKELFLKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVE---RVPTTII 83 (215)
T ss_pred HHHHHHHHHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCC---ccCEEEE
Confidence 444444 33 35666766777 5553 57788999996666655 4333 578999999998 8999999
Q ss_pred EecCCCCccccCCCCChHHHHHHHhhcc--CCceeecCcccccccccCCCceEE-EEEEec-cchHHHHHHHHHHHHhhc
Q 018164 73 VKSEPDRYTGYEETFIMDKILQFLNYNK--FPLVTKLTDINSASVHSSPIKLQV-YVFAKA-DDLKSLLEPLEDIARNFK 148 (360)
Q Consensus 73 ~~~~~~~~~~y~g~~~~~~l~~fi~~~~--~p~v~~l~~~~~~~~~~~~~~~~v-~f~~~~-~~~~~~~~~~~~la~~~~ 148 (360)
|+.+......|.|..+.+++.+||.... .+.-..+++.+.+.+-....+..| +|+++| ++|+.+.+.+++++.+.
T Consensus 84 f~~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~- 162 (215)
T TIGR02187 84 LEEGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN- 162 (215)
T ss_pred EeCCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-
Confidence 9975443347888778888999987642 223446666655555454555544 488999 99999999999999885
Q ss_pred CceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164 149 GKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR 209 (360)
Q Consensus 149 ~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~ 209 (360)
+++.+..+|.+..+ .+++.+||.+. |+++ +...+ .. +.|..+.+.+.+|+.+
T Consensus 163 ~~i~~~~vD~~~~~---~~~~~~~V~~v-Ptl~-i~~~~--~~--~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 163 DKILGEMIEANENP---DLAEKYGVMSV-PKIV-INKGV--EE--FVGAYPEEQFLEYILS 214 (215)
T ss_pred CceEEEEEeCCCCH---HHHHHhCCccC-CEEE-EecCC--EE--EECCCCHHHHHHHHHh
Confidence 46999999999876 89999999998 9985 43322 22 4688888899998864
No 71
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.43 E-value=2.7e-13 Score=99.50 Aligned_cols=93 Identities=12% Similarity=0.196 Sum_probs=73.2
Q ss_pred cccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCcc
Q 018164 239 TFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKA 315 (360)
Q Consensus 239 ~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~ 315 (360)
.|++.+.+ .++.++|.|+++||++|+.+.|.++++|..+++ .+.|+.+|+++. ++. .++|...||+++|++|+..
T Consensus 4 ~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 45555543 488999999999999999999999999999964 499999999998 665 6799999999999999876
Q ss_pred CceEec-C--------CCCHHHHHHHHH
Q 018164 316 NPIKVS-A--------RSSSKNIAAFIK 334 (360)
Q Consensus 316 ~~~~~~-g--------~~~~~~l~~~i~ 334 (360)
.+.|. | ..+.++++..|.
T Consensus 82 -~~d~gt~~~~k~~~~~~~k~~~idi~e 108 (114)
T cd02986 82 -KVDYGSPDHTKFVGSFKTKQDFIDLIE 108 (114)
T ss_pred -EEecCCCCCcEEEEEcCchhHHHHHHH
Confidence 23332 2 234466666554
No 72
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.43 E-value=6.3e-13 Score=99.08 Aligned_cols=101 Identities=21% Similarity=0.178 Sum_probs=84.9
Q ss_pred CceeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164 102 PLVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 179 (360)
Q Consensus 102 p~v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~ 179 (360)
|.+.+++..+|...+ ..+.+++|.||++| ++|+.+.+.|.++++++.+.+.|+.+||+... .+|+.+||.++ |+
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~i~~~-Pt 76 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE---SLCQQANIRAY-PT 76 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH---HHHHHcCCCcc-cE
Confidence 457789999999865 45568899999999 99999999999999999988999999999875 89999999999 99
Q ss_pred eEEEEeCCCcccccCCCCCC-HHHHHHHH
Q 018164 180 VVTAFDNKAISKFLLESDLT-PSNIEEFC 207 (360)
Q Consensus 180 ~~~~~~~~~~~~y~~~~~~~-~~~i~~fi 207 (360)
++++ ..++...+.+.|..+ .+.|.+|+
T Consensus 77 ~~~~-~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLY-PGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEE-cCCCCCceEccCCCCCHHHHHhhC
Confidence 9655 443344566788886 99998885
No 73
>PTZ00051 thioredoxin; Provisional
Probab=99.43 E-value=4.5e-13 Score=98.74 Aligned_cols=91 Identities=21% Similarity=0.471 Sum_probs=72.6
Q ss_pred eEEEcC-ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEE
Q 018164 232 VQIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 308 (360)
Q Consensus 232 v~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~ 308 (360)
|..+++ ++|.+.+ +.++.++|+||++||++|+.+.+.++++++.+. ++.++.+|++.+ .+ .++++.++||+++
T Consensus 2 v~~i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 444544 4566654 678899999999999999999999999999765 589999999987 44 4789999999999
Q ss_pred EeCCCccCceEecCCCCHHHH
Q 018164 309 YPAGDKANPIKVSARSSSKNI 329 (360)
Q Consensus 309 ~~~g~~~~~~~~~g~~~~~~l 329 (360)
|++|+.. .++.|. ..+.|
T Consensus 78 ~~~g~~~--~~~~G~-~~~~~ 95 (98)
T PTZ00051 78 FKNGSVV--DTLLGA-NDEAL 95 (98)
T ss_pred EeCCeEE--EEEeCC-CHHHh
Confidence 9988774 367774 44444
No 74
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.42 E-value=1e-12 Score=97.76 Aligned_cols=100 Identities=21% Similarity=0.324 Sum_probs=86.5
Q ss_pred eeecCcccccccccC-CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164 104 VTKLTDINSASVHSS-PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 181 (360)
Q Consensus 104 v~~l~~~~~~~~~~~-~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~ 181 (360)
|..+|.++|+..+.. +.+++|+||++| ++|+.+.+.|.++++.+.+++.|+.+|++... .+|+.++|..+ |+++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~-Pt~~ 76 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK---ELCKKYGVKSV-PTII 76 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH---HHHHHTTCSSS-SEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccc---hhhhccCCCCC-CEEE
Confidence 467899999998776 788999999999 99999999999999999988999999999775 89999999999 9996
Q ss_pred EEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164 182 TAFDNKAISKFLLESDLTPSNIEEFCSR 209 (360)
Q Consensus 182 ~~~~~~~~~~y~~~~~~~~~~i~~fi~~ 209 (360)
.+.++.... .+.|..+.+.|.+||++
T Consensus 77 ~~~~g~~~~--~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 77 FFKNGKEVK--RYNGPRNAESLIEFIEK 102 (103)
T ss_dssp EEETTEEEE--EEESSSSHHHHHHHHHH
T ss_pred EEECCcEEE--EEECCCCHHHHHHHHHc
Confidence 554443333 44788999999999986
No 75
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.42 E-value=1e-12 Score=100.15 Aligned_cols=96 Identities=10% Similarity=0.173 Sum_probs=74.8
Q ss_pred eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC---CC----------C-
Q 018164 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE---HP----------K- 297 (360)
Q Consensus 232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---~~----------~- 297 (360)
+..++...+.+.+ .+++.++|+|+++||++|+.+.|.+.++++.. ++.++.+|++.+. +. .
T Consensus 8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 4556667787776 55778999999999999999999999999983 4567888877542 11 1
Q ss_pred ---CCCCCCcEEEEEeCCCccCceEecC-CCCHHHHHHHHH
Q 018164 298 ---LQVEEYPTLLFYPAGDKANPIKVSA-RSSSKNIAAFIK 334 (360)
Q Consensus 298 ---~~i~~~Pti~~~~~g~~~~~~~~~g-~~~~~~l~~~i~ 334 (360)
.++.++||+++|++|+.+. +..| ..+.++|.+|+.
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~v~--~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQVS--VRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCcccCCCCCEEEEEeCCeEEE--EEeCCCCCHHHHHHHhh
Confidence 2466799999999998864 5667 667999999874
No 76
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.41 E-value=1.2e-12 Score=95.00 Aligned_cols=90 Identities=27% Similarity=0.623 Sum_probs=74.9
Q ss_pred cccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccC
Q 018164 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKAN 316 (360)
Q Consensus 239 ~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~ 316 (360)
+|...+ ...++++|+||++||+.|..+.+.++++++. .+ ++.++.+|++.+ .+ ..+++.++|++++|++|...
T Consensus 2 ~~~~~~-~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~- 76 (93)
T cd02947 2 EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP--KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEV- 76 (93)
T ss_pred chHHHH-hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC--CceEEEEECCCChhHHHhcCcccccEEEEEECCEEE-
Confidence 455555 3348999999999999999999999999988 33 799999999986 44 47899999999999998753
Q ss_pred ceEecCCCCHHHHHHHHH
Q 018164 317 PIKVSARSSSKNIAAFIK 334 (360)
Q Consensus 317 ~~~~~g~~~~~~l~~~i~ 334 (360)
..+.|..+.+.|.+||.
T Consensus 77 -~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 77 -DRVVGADPKEELEEFLE 93 (93)
T ss_pred -EEEecCCCHHHHHHHhC
Confidence 47788888899988873
No 77
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.40 E-value=2.1e-11 Score=100.82 Aligned_cols=172 Identities=20% Similarity=0.333 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCC-CCHHHHHHHHHHHhcC
Q 018164 135 SLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD-LTPSNIEEFCSRLLHG 213 (360)
Q Consensus 135 ~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~-~~~~~i~~fi~~~~~g 213 (360)
.....|.++|+.+.+.+.|+.+.. ..+++.+|+.. |.++++.. .......|.|. .+.+.|.+||....-
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~~------~~~~~~~~~~~--p~i~~~k~-~~~~~~~y~~~~~~~~~l~~fI~~~~~- 76 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTFN------EELAKKYGIKE--PTIVVYKK-FDEKPVVYDGDKFTPEELKKFIKKNSF- 76 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE-------HHHHHHCTCSS--SEEEEEEC-TTTSEEEESSSTTSHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHHhCcCCcEEEEEcH------HHHHHHhCCCC--CcEEEecc-CCCCceecccccCCHHHHHHHHHHhcc-
Confidence 356689999999998899999862 27889999876 78865544 34455666787 899999999999643
Q ss_pred ccCCccccCCCCCCCCCceEEEcCccccccccccCc-cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 018164 214 TLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHK-DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 292 (360)
Q Consensus 214 ~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 292 (360)
+.|..++..++..+. ..+. .+++.|+.........+...++.+|+.+++ ++.|+.+|++.
T Consensus 77 ----------------P~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~ 137 (184)
T PF13848_consen 77 ----------------PLVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADD 137 (184)
T ss_dssp ----------------TSCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTT
T ss_pred ----------------ccccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHH
Confidence 248899999999986 4454 478888777778888899999999999987 79999999996
Q ss_pred C-CC-CCCCCC--CCcEEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 018164 293 N-EH-PKLQVE--EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 335 (360)
Q Consensus 293 ~-~~-~~~~i~--~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~ 335 (360)
+ .. ..++++ .+|+++++..........+.|..+.++|.+||++
T Consensus 138 ~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 138 FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp THHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 5 33 356776 8999999974333212334799999999999974
No 78
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.39 E-value=2.2e-12 Score=96.78 Aligned_cols=100 Identities=20% Similarity=0.202 Sum_probs=84.1
Q ss_pred ceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhc------CceEEEEEeCCCcccchhHHhhcCCCC
Q 018164 103 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK------GKIMFTAVDIADEDLAKPFLTLFGLEE 175 (360)
Q Consensus 103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~------~~i~f~~vd~~~~~~~~~l~~~~gi~~ 175 (360)
.|.+++.++|+..+..+.+++|.||++| .+|+++.+.|+++|+.++ +++.|+.+||+... .+|+.|||++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~---~l~~~~~v~~ 78 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES---DIADRYRINK 78 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH---HHHHhCCCCc
Confidence 4678899999998888888899999999 999999999999999864 25899999999875 8999999999
Q ss_pred CCCceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164 176 SKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 176 ~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi 207 (360)
+ |+++++ ..+......+.|..+.+.|.+||
T Consensus 79 ~-Ptl~~~-~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 79 Y-PTLKLF-RNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred C-CEEEEE-eCCcCcceecCCCCCHHHHHhhC
Confidence 9 999655 44432345568999999999985
No 79
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.36 E-value=2.7e-12 Score=95.44 Aligned_cols=84 Identities=20% Similarity=0.373 Sum_probs=72.4
Q ss_pred CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCC--CCcEEEEEeC--CCccCceEec
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVE--EYPTLLFYPA--GDKANPIKVS 321 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~--~~Pti~~~~~--g~~~~~~~~~ 321 (360)
++++++.|+++||++|..+.+.++++|+.+++ ++.|+++|++.+ .+ ..+++. ++|++++++. |.+. .+.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~---~~~ 86 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKY---LMP 86 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEeccccccc---CCC
Confidence 68999999999999999999999999999997 799999999997 44 367998 9999999988 4442 344
Q ss_pred -CCCCHHHHHHHHHHh
Q 018164 322 -ARSSSKNIAAFIKEQ 336 (360)
Q Consensus 322 -g~~~~~~l~~~i~~~ 336 (360)
|..+.++|.+||.+.
T Consensus 87 ~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 87 EEELTAESLEEFVEDF 102 (103)
T ss_pred ccccCHHHHHHHHHhh
Confidence 456999999999875
No 80
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.5e-12 Score=103.65 Aligned_cols=104 Identities=19% Similarity=0.403 Sum_probs=84.6
Q ss_pred eEEEcC-ccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164 232 VQIVVG-KTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL 307 (360)
Q Consensus 232 v~~l~~-~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~ 307 (360)
|..+.+ .+|...+.. ..+.++|.|+|.||++|+.+.|+|..++.+|.+ .+|.++|++.- .. ..++|...||++
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhhchhhhcCcccCceEE
Confidence 444543 567776633 356999999999999999999999999999964 78999999886 44 478999999999
Q ss_pred EEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164 308 FYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD 341 (360)
Q Consensus 308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 341 (360)
+|++|.++. .+.| .+...|...|.+++.+.+
T Consensus 80 ff~ng~kid--~~qG-Ad~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 80 FFRNGVKID--QIQG-ADASGLEEKVAKYASTSA 110 (288)
T ss_pred EEecCeEee--eecC-CCHHHHHHHHHHHhccCc
Confidence 999998863 4554 588899999999987654
No 81
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.35 E-value=4.2e-12 Score=97.96 Aligned_cols=90 Identities=18% Similarity=0.314 Sum_probs=72.4
Q ss_pred ccC-ccEEEEEeCCCChhhHHHHHHHH---HHHHHhcCCCCEEEEEEeCCCC--------------CC-CCCCCCCCcEE
Q 018164 246 NSH-KDVLLEVYTPWCVTCETTSKQIE---KLAKHFKGLDNLVIAKIDASAN--------------EH-PKLQVEEYPTL 306 (360)
Q Consensus 246 ~~~-~~~~v~f~~~~c~~c~~~~~~~~---~la~~~~~~~~~~~~~id~~~~--------------~~-~~~~i~~~Pti 306 (360)
... ++++|.||++||++|+.+.+.+. .+...+++ ++.+..+|++.+ .+ ..+++.++||+
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 445 89999999999999999999885 56666764 788999998764 22 35799999999
Q ss_pred EEEeCC-CccCceEecCCCCHHHHHHHHHHhcC
Q 018164 307 LFYPAG-DKANPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 307 ~~~~~g-~~~~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
++|..+ ++. ..++.|..+.+.+.++|+..++
T Consensus 89 ~~~~~~gg~~-~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 89 IFLDPEGGKE-IARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred EEEcCCCCce-eEEecCCCCHHHHHHHHHHHHh
Confidence 999875 343 4578899999999999988764
No 82
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.34 E-value=6.6e-12 Score=93.35 Aligned_cols=96 Identities=28% Similarity=0.480 Sum_probs=77.4
Q ss_pred cccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCC--CCCCceEEEEeCC
Q 018164 111 NSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE--ESKNTVVTAFDNK 187 (360)
Q Consensus 111 ~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~--~~~p~~~~~~~~~ 187 (360)
++..+...+.+++++|+++| ++|+.+.+.++++|+++++++.|+++|+++++ .+++.+|+. +. |++ +++...
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~---~~~~~~~i~~~~~-P~~-~~~~~~ 78 (103)
T cd02982 4 TFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG---RHLEYFGLKEEDL-PVI-AIINLS 78 (103)
T ss_pred HHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH---HHHHHcCCChhhC-CEE-EEEecc
Confidence 33434333678888899888 79999999999999999999999999999875 899999999 55 777 455554
Q ss_pred CcccccCCCC-CCHHHHHHHHHHHh
Q 018164 188 AISKFLLESD-LTPSNIEEFCSRLL 211 (360)
Q Consensus 188 ~~~~y~~~~~-~~~~~i~~fi~~~~ 211 (360)
++.+|.+.+. .+.++|.+|+++++
T Consensus 79 ~~~k~~~~~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 79 DGKKYLMPEEELTAESLEEFVEDFL 103 (103)
T ss_pred cccccCCCccccCHHHHHHHHHhhC
Confidence 4567776554 59999999999863
No 83
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.33 E-value=7.6e-12 Score=93.03 Aligned_cols=104 Identities=11% Similarity=0.027 Sum_probs=77.3
Q ss_pred eeecCcccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhc---CceEEEEEeCCCccc--chhHHhhcCCC--CC
Q 018164 104 VTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFK---GKIMFTAVDIADEDL--AKPFLTLFGLE--ES 176 (360)
Q Consensus 104 v~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~---~~i~f~~vd~~~~~~--~~~l~~~~gi~--~~ 176 (360)
+..|++.||++++.....++|.||++|+.|.+ ++.++++|.++. ..|.++.|||+.++- +++||++|||+ ++
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 56799999999998888899999995544544 366666766663 249999999953210 24899999999 88
Q ss_pred CCceEEEEeCCCcccccCCCC-CCHHHHHHHHHH
Q 018164 177 KNTVVTAFDNKAISKFLLESD-LTPSNIEEFCSR 209 (360)
Q Consensus 177 ~p~~~~~~~~~~~~~y~~~~~-~~~~~i~~fi~~ 209 (360)
|++.++.++.......|.|. ++.+.|.+|+..
T Consensus 82 -PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 82 -PVIYLFHGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred -CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 99964444322234456896 999999999976
No 84
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.32 E-value=1.2e-11 Score=92.03 Aligned_cols=99 Identities=22% Similarity=0.165 Sum_probs=83.5
Q ss_pred eeecCccccccccc-CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164 104 VTKLTDINSASVHS-SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 181 (360)
Q Consensus 104 v~~l~~~~~~~~~~-~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~ 181 (360)
|.+++..++...+. .+.+++++||++| ++|+.+.+.|.++++++.+++.|+.+|++... .+++.+||.++ |+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~~~~~i~~~-P~~~ 77 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ---SLAQQYGVRGF-PTIK 77 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH---HHHHHCCCCcc-CEEE
Confidence 46788888888654 4445889999999 99999999999999999999999999999875 89999999998 9985
Q ss_pred EEEeCCCcccccCCCCCCHHHHHHHH
Q 018164 182 TAFDNKAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 182 ~~~~~~~~~~y~~~~~~~~~~i~~fi 207 (360)
++..+....+.|.|..+.+.|.+|+
T Consensus 78 -~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 78 -VFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred -EECCCCcceeecCCCCCHHHHHHHh
Confidence 4554444566778999999999996
No 85
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.32 E-value=1.2e-11 Score=93.01 Aligned_cols=102 Identities=21% Similarity=0.219 Sum_probs=83.9
Q ss_pred eeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164 104 VTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 181 (360)
Q Consensus 104 v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~ 181 (360)
+.+++..+|...+ +.+.++++.||++| ++|+++.+.|.++++.+.+.+.|+.+||+... +..+|+.|+|.++ |+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~i~~~-Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYGVQGF-PTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcCCCcC-CEEE
Confidence 5688999998865 44566899999999 99999999999999999988999999999722 2389999999999 9996
Q ss_pred EEEeCC---CcccccCCCCCCHHHHHHHH
Q 018164 182 TAFDNK---AISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 182 ~~~~~~---~~~~y~~~~~~~~~~i~~fi 207 (360)
++.+++ ....+.|.|..+.+.|.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHh
Confidence 554443 12345668999999999997
No 86
>PTZ00062 glutaredoxin; Provisional
Probab=99.28 E-value=1.9e-11 Score=100.80 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=77.6
Q ss_pred ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEEEEEeCCCccCc
Q 018164 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANP 317 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti~~~~~g~~~~~ 317 (360)
+.|.+.+..+.+.++++|+|+||+.|+.+.+.+.+|++.+. ++.|+.||++ ++|.++||+++|++|+.++
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d------~~V~~vPtfv~~~~g~~i~- 76 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA------DANNEYGVFEFYQNSQLIN- 76 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc------cCcccceEEEEEECCEEEe-
Confidence 45666664445889999999999999999999999999985 5999999987 8999999999999998865
Q ss_pred eEecCCCCHHHHHHHHHHhcCCCC
Q 018164 318 IKVSARSSSKNIAAFIKEQLKEKD 341 (360)
Q Consensus 318 ~~~~g~~~~~~l~~~i~~~~~~~~ 341 (360)
++.|. ++..|.++|.++.+...
T Consensus 77 -r~~G~-~~~~~~~~~~~~~~~~~ 98 (204)
T PTZ00062 77 -SLEGC-NTSTLVSFIRGWAQKGS 98 (204)
T ss_pred -eeeCC-CHHHHHHHHHHHcCCCC
Confidence 66664 58888888888877544
No 87
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.28 E-value=2.4e-11 Score=86.27 Aligned_cols=78 Identities=17% Similarity=0.378 Sum_probs=66.5
Q ss_pred EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHH
Q 018164 251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKN 328 (360)
Q Consensus 251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~ 328 (360)
.+..||++||++|+.+.+.+++++..++. .+.+..+|++.+ +. ..+++.++|++++ +|. .++.|..+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~----~~~~G~~~~~~ 73 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD----VEFIGAPTKEE 73 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE----EEEecCCCHHH
Confidence 46789999999999999999999999875 689999999877 33 4789999999986 553 27889999999
Q ss_pred HHHHHHHh
Q 018164 329 IAAFIKEQ 336 (360)
Q Consensus 329 l~~~i~~~ 336 (360)
|.++|.+.
T Consensus 74 l~~~l~~~ 81 (82)
T TIGR00411 74 LVEAIKKR 81 (82)
T ss_pred HHHHHHhh
Confidence 99999864
No 88
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.27 E-value=2.1e-11 Score=91.87 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=81.7
Q ss_pred ceeecCcccccccccCCCceEEEEEEec--c--chH--HHHHHHHHHHHhh--cCceEEEEEeCCCcccchhHHhhcCCC
Q 018164 103 LVTKLTDINSASVHSSPIKLQVYVFAKA--D--DLK--SLLEPLEDIARNF--KGKIMFTAVDIADEDLAKPFLTLFGLE 174 (360)
Q Consensus 103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~--~--~~~--~~~~~~~~la~~~--~~~i~f~~vd~~~~~~~~~l~~~~gi~ 174 (360)
.|..+|.+||++.+..+...+|.||.+| + +|+ .+.|.+.++|.++ .+++.|+.||++.+. .+++.|||.
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~---~La~~~~I~ 86 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA---KVAKKLGLD 86 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH---HHHHHcCCc
Confidence 4677899999987766655566666655 4 499 7788899999999 788999999999886 999999999
Q ss_pred CCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164 175 ESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL 211 (360)
Q Consensus 175 ~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~ 211 (360)
+. ||++++.+ +.. ..+.|.++.+.|.+|+.+.+
T Consensus 87 ~i-PTl~lfk~-G~~--v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 87 EE-DSIYVFKD-DEV--IEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cc-cEEEEEEC-CEE--EEeeCCCCHHHHHHHHHHHh
Confidence 99 99965544 332 23689999999999999864
No 89
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.3e-11 Score=92.85 Aligned_cols=106 Identities=17% Similarity=0.243 Sum_probs=90.1
Q ss_pred CCceeecCcccccc-cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164 101 FPLVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN 178 (360)
Q Consensus 101 ~p~v~~l~~~~~~~-~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p 178 (360)
...+...+...+++ +.++..|++|.|+++| ++|+.+.|.+.+++.+|.|++.|+.+|.+++. +++..|+|... |
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~---ela~~Y~I~av-P 117 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHP---ELAEDYEISAV-P 117 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccccc---chHhhcceeee-e
Confidence 44666777777776 6678889999999999 99999999999999999999999999999987 99999999988 9
Q ss_pred ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164 179 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH 212 (360)
Q Consensus 179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~ 212 (360)
+++++.++....++ .|-.+.+.|.+||++++.
T Consensus 118 tvlvfknGe~~d~~--vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 118 TVLVFKNGEKVDRF--VGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEEECCEEeeee--cccCCHHHHHHHHHHHhc
Confidence 99665555443344 688899999999999873
No 90
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.25 E-value=3.2e-11 Score=90.53 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=81.7
Q ss_pred eeecCccccccccc---CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHHh-hcCCCCCC
Q 018164 104 VTKLTDINSASVHS---SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLT-LFGLEESK 177 (360)
Q Consensus 104 v~~l~~~~~~~~~~---~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~-~~gi~~~~ 177 (360)
|.+++.++|+.+.. .+.++++.||++| ++|+++.+.|.+++..+++. +.++.+||+... ..+|. .++++.+
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v~~~- 79 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQLKSF- 79 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCCCcC-
Confidence 67889999988763 4678999999999 99999999999999999974 999999999632 37776 5999999
Q ss_pred CceEEEEeCCCcccccCCCC-CCHHHHHHHH
Q 018164 178 NTVVTAFDNKAISKFLLESD-LTPSNIEEFC 207 (360)
Q Consensus 178 p~~~~~~~~~~~~~y~~~~~-~~~~~i~~fi 207 (360)
|+++ ++..+....+.|.|. ++.+.|..|+
T Consensus 80 Pti~-~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTIL-FFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEE-EEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9995 455544456667885 8999999885
No 91
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.25 E-value=2e-11 Score=91.63 Aligned_cols=91 Identities=16% Similarity=0.300 Sum_probs=68.2
Q ss_pred cccccccccc-CccEEEEEeC-------CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--------CCC-CCCC
Q 018164 238 KTFDDLVLNS-HKDVLLEVYT-------PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------EHP-KLQV 300 (360)
Q Consensus 238 ~~~~~~~~~~-~~~~~v~f~~-------~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--------~~~-~~~i 300 (360)
++|.+.+... +++++|.||| +||++|+.+.|.+++++..+.+ ++.|++||++.+ ++. .++|
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhccCc
Confidence 5666666543 5799999999 9999999999999999999975 689999999763 332 5688
Q ss_pred C-CCcEEEEEeCCCccCceEecCCCCHHHHHHHH
Q 018164 301 E-EYPTLLFYPAGDKANPIKVSARSSSKNIAAFI 333 (360)
Q Consensus 301 ~-~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i 333 (360)
. ++||+++|+.|++. .-..-.+.+.+..|+
T Consensus 88 ~~~iPT~~~~~~~~~l---~~~~c~~~~~~~~~~ 118 (119)
T cd02952 88 TTGVPTLLRWKTPQRL---VEDECLQADLVEMFF 118 (119)
T ss_pred ccCCCEEEEEcCCcee---cchhhcCHHHHHHhh
Confidence 7 99999999777553 111123555555543
No 92
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.25 E-value=3.6e-11 Score=89.11 Aligned_cols=98 Identities=24% Similarity=0.276 Sum_probs=83.0
Q ss_pred cCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC--ceEEEEEeCCCcccchhHHhhcCCCCCCCceEEE
Q 018164 107 LTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG--KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTA 183 (360)
Q Consensus 107 l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~--~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~ 183 (360)
++.++|...+..+.+++++|+++| ..|+.+.+.|.+++..+++ .+.|+.+||+... .+++.|||.++ |++++
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~i~~~-P~~~~- 75 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK---DLASRFGVSGF-PTIKF- 75 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH---HHHHhCCCCcC-CEEEE-
Confidence 456778887777788899999999 9999999999999999997 6999999999875 89999999998 98854
Q ss_pred EeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164 184 FDNKAISKFLLESDLTPSNIEEFCSRL 210 (360)
Q Consensus 184 ~~~~~~~~y~~~~~~~~~~i~~fi~~~ 210 (360)
+..+.. .+.+.|..+.+.|..||++.
T Consensus 76 ~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 76 FPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred ecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 444433 66678999999999999874
No 93
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=99.24 E-value=4.3e-11 Score=89.28 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=80.7
Q ss_pred eeecCcccccccccCCCceEEEEEEe----c-cchHHHHHHHHHHHHhhc-CceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164 104 VTKLTDINSASVHSSPIKLQVYVFAK----A-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADEDLAKPFLTLFGLEESK 177 (360)
Q Consensus 104 v~~l~~~~~~~~~~~~~~~~v~f~~~----~-~~~~~~~~~~~~la~~~~-~~i~f~~vd~~~~~~~~~l~~~~gi~~~~ 177 (360)
|+++|.+|...++..+ .++.+|+- . ...+.+...++++|++|+ +++.|+++|.+.+. ..++.||++...
T Consensus 1 v~~~~~en~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~---~~l~~fgl~~~~ 75 (111)
T cd03073 1 VGHRTKDNRAQFTKKP--LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS---HELEEFGLDFSG 75 (111)
T ss_pred CCeeccchHHHhccCC--eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH---HHHHHcCCCccc
Confidence 5678899998886444 44554433 3 567889999999999999 79999999999875 689999999643
Q ss_pred --CceEEEEeCCCcccccCCCCC-CHHHHHHHHHHHh
Q 018164 178 --NTVVTAFDNKAISKFLLESDL-TPSNIEEFCSRLL 211 (360)
Q Consensus 178 --p~~~~~~~~~~~~~y~~~~~~-~~~~i~~fi~~~~ 211 (360)
.|++++.+..+ .+|++.+.. +.++|.+|+++++
T Consensus 76 ~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 76 GEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHhC
Confidence 45556776544 899888889 9999999999874
No 94
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.24 E-value=5.5e-11 Score=88.01 Aligned_cols=98 Identities=18% Similarity=0.127 Sum_probs=81.8
Q ss_pred ceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164 103 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180 (360)
Q Consensus 103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~ 180 (360)
.|.+++.++|+.+.... ++|.||++| ++|+.+.+.|.+++..+++ .+.|+.+||+..+ .+++.++|.++ |++
T Consensus 2 ~v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~---~~~~~~~i~~~-Pt~ 75 (101)
T cd02994 2 NVVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP---GLSGRFFVTAL-PTI 75 (101)
T ss_pred ceEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH---hHHHHcCCccc-CEE
Confidence 36789999999877543 789999999 9999999999999998874 5999999999875 89999999999 999
Q ss_pred EEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164 181 VTAFDNKAISKFLLESDLTPSNIEEFCSR 209 (360)
Q Consensus 181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~ 209 (360)
+++ ..+. ...+.|..+.+.|.+|+++
T Consensus 76 ~~~-~~g~--~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 76 YHA-KDGV--FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEe-CCCC--EEEecCCCCHHHHHHHHhC
Confidence 654 3332 3456899999999999863
No 95
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.24 E-value=1.8e-10 Score=96.87 Aligned_cols=182 Identities=16% Similarity=0.207 Sum_probs=125.8
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccC
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL 194 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~ 194 (360)
...|++-||+|| .+|+++.|.|.++.-+++. -|.++.+||+.++ .++..|||++| |++. ++.++ ..|.|
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~---aiAnefgiqGY-PTIk-~~kgd--~a~dY 115 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFP---AIANEFGIQGY-PTIK-FFKGD--HAIDY 115 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccch---hhHhhhccCCC-ceEE-EecCC--eeeec
Confidence 346899999999 9999999999999998884 3999999999997 89999999999 9994 55543 46677
Q ss_pred CCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHH
Q 018164 195 ESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA 274 (360)
Q Consensus 195 ~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la 274 (360)
.|+++.+.|..|.....+.-+.| +|+++ ..|.. +...+++.+|+|-+.. ++ +...+...|
T Consensus 116 RG~R~Kd~iieFAhR~a~aiI~p------i~enQ---------~~feh-lq~Rhq~ffVf~Gtge-~P---L~d~fidAA 175 (468)
T KOG4277|consen 116 RGGREKDAIIEFAHRCAAAIIEP------INENQ---------IEFEH-LQARHQPFFVFFGTGE-GP---LFDAFIDAA 175 (468)
T ss_pred CCCccHHHHHHHHHhcccceeee------cChhH---------HHHHH-HhhccCceEEEEeCCC-Cc---HHHHHHHHh
Confidence 99999999999999876532222 22210 12333 3456889999887543 11 222333333
Q ss_pred HHhcCCCCEEEEEEe-CCCCCCC-CCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164 275 KHFKGLDNLVIAKID-ASANEHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336 (360)
Q Consensus 275 ~~~~~~~~~~~~~id-~~~~~~~-~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~ 336 (360)
.. .+.+++.= ++..-.+ .......|.+.+|++... .+.. .-+.+.|..||++-
T Consensus 176 ---Se--~~~~a~FfSaseeVaPe~~~~kempaV~VFKDetf--~i~d--e~dd~dLseWinRE 230 (468)
T KOG4277|consen 176 ---SE--KFSVARFFSASEEVAPEENDAKEMPAVAVFKDETF--EIED--EGDDEDLSEWINRE 230 (468)
T ss_pred ---hh--heeeeeeeccccccCCcccchhhccceEEEcccee--EEEe--cCchhHHHHHHhHh
Confidence 22 45555553 3333233 346778899999987633 2233 44678899999864
No 96
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.24 E-value=3.7e-11 Score=89.12 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=81.5
Q ss_pred eeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164 104 VTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESKNT 179 (360)
Q Consensus 104 v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~ 179 (360)
+..++.++|......+ ++++.||++| .+|+.+.+.|.++++++++ ++.|+.+||+... .+|+.+++... |+
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~-Pt 76 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR---ELCSEFQVRGY-PT 76 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh---hhHhhcCCCcC-CE
Confidence 5678888999877665 5889999999 9999999999999999987 7999999999875 89999999998 99
Q ss_pred eEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164 180 VVTAFDNKAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi 207 (360)
++++. .+. ....+.|..+.+.|.+||
T Consensus 77 ~~~~~-~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 77 LLLFK-DGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEe-CCC-eeeEeeCCCCHHHHHhhC
Confidence 86554 332 344568999999998875
No 97
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.22 E-value=7.7e-11 Score=87.68 Aligned_cols=99 Identities=19% Similarity=0.202 Sum_probs=81.2
Q ss_pred eeecCccccccccc-CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC--ceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164 104 VTKLTDINSASVHS-SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG--KIMFTAVDIADEDLAKPFLTLFGLEESKNT 179 (360)
Q Consensus 104 v~~l~~~~~~~~~~-~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~--~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~ 179 (360)
|..++..+|.+... .+.+++|+||++| +.|+.+.+.|.++++.+++ ++.|+.+||+.. .++..+++.++ |+
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~~~~-Pt 76 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFVVDGF-PT 76 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhccCCCC-CE
Confidence 67889999988654 4578889999999 9999999999999999986 599999999975 57788899887 99
Q ss_pred eEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164 180 VVTAFDNKAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi 207 (360)
++++.++.......+.|..+.+.|.+||
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 77 ILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 8655444323455668999999999886
No 98
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.21 E-value=3.1e-11 Score=91.35 Aligned_cols=94 Identities=16% Similarity=0.310 Sum_probs=64.9
Q ss_pred cccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCC--CcEEEEEe-CCCccC-ceE
Q 018164 245 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEE--YPTLLFYP-AGDKAN-PIK 319 (360)
Q Consensus 245 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~--~Pti~~~~-~g~~~~-~~~ 319 (360)
..++++++|.|||+||++|+.+.|.+.+.+.......++..+.+|.+.... ..+++.+ +||+++|. +|+... .+.
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence 356889999999999999999999999987755432245554444433232 4567765 99999995 665543 224
Q ss_pred ecCCCCHHHHHHHHHHhcC
Q 018164 320 VSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 320 ~~g~~~~~~l~~~i~~~~~ 338 (360)
..|..+.+.+.+.|....+
T Consensus 96 ~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 96 KKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCCccccccCCCHHHHHh
Confidence 5577777777666665544
No 99
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.19 E-value=1.4e-10 Score=86.42 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=82.2
Q ss_pred eeecCcccccccccCC-CceEEEEEEec-cchHHHHHHHHHHHHhhc--CceEEEEEeCCC-cccchhHHhhcCCCCCCC
Q 018164 104 VTKLTDINSASVHSSP-IKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIAD-EDLAKPFLTLFGLEESKN 178 (360)
Q Consensus 104 v~~l~~~~~~~~~~~~-~~~~v~f~~~~-~~~~~~~~~~~~la~~~~--~~i~f~~vd~~~-~~~~~~l~~~~gi~~~~p 178 (360)
+.+++++++....... .+.+++|+++| ..|+++.+.|.++++.++ +++.|+.+||.. .+ .+|+.++|.++ |
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~~~~i~~~-P 77 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK---DLAKKYGVSGF-P 77 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch---hhHHhCCCCCc-C
Confidence 4578888888876544 47889999999 999999999999999997 469999999998 65 89999999998 9
Q ss_pred ceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164 179 TVVTAFDNKAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi 207 (360)
+++++ ..+....+.+.|..+.+.|.+|+
T Consensus 78 ~~~~~-~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFF-PKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEE-eCCCCCccccCCccCHHHHHhhC
Confidence 98544 44434566678999999999885
No 100
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.19 E-value=9.8e-11 Score=98.23 Aligned_cols=105 Identities=15% Similarity=0.230 Sum_probs=87.3
Q ss_pred CceeecCcccccccccC-----CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCC
Q 018164 102 PLVTKLTDINSASVHSS-----PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE 175 (360)
Q Consensus 102 p~v~~l~~~~~~~~~~~-----~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~ 175 (360)
..+.++++.+|+..... +.+++|.||++| ++|+++.+.|.++++++++.+.|+.+||+... .+++.|+|.+
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~---~l~~~~~I~~ 106 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL---NLAKRFAIKG 106 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH---HHHHHcCCCc
Confidence 45888999999986642 468899999999 99999999999999999999999999999875 8999999999
Q ss_pred CCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164 176 SKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH 212 (360)
Q Consensus 176 ~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~ 212 (360)
+ |++++ +..+....| ..|..+.+.|.+|+.+.+.
T Consensus 107 ~-PTl~~-f~~G~~v~~-~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 107 Y-PTLLL-FDKGKMYQY-EGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred C-CEEEE-EECCEEEEe-eCCCCCHHHHHHHHHHHHH
Confidence 9 99964 444322222 3577999999999998764
No 101
>PTZ00062 glutaredoxin; Provisional
Probab=99.18 E-value=2.2e-10 Score=94.43 Aligned_cols=158 Identities=16% Similarity=0.245 Sum_probs=105.0
Q ss_pred cccccccCC-CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCC
Q 018164 111 NSASVHSSP-IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA 188 (360)
Q Consensus 111 ~~~~~~~~~-~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~ 188 (360)
.+..+...+ ...+++|.++| ++|+.+.+.+.+++++|.+ +.|+.||++ ++|.+. |+++.+.++..
T Consensus 8 e~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d-----------~~V~~v-Ptfv~~~~g~~ 74 (204)
T PTZ00062 8 EKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA-----------DANNEY-GVFEFYQNSQL 74 (204)
T ss_pred HHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc-----------cCcccc-eEEEEEECCEE
Confidence 344444433 45667777999 9999999999999999975 999999865 788888 99965554443
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccEEEEEe----CCCChhhH
Q 018164 189 ISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVY----TPWCVTCE 264 (360)
Q Consensus 189 ~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~----~~~c~~c~ 264 (360)
..++ . ..++..|..++..+..... + . . ..+-..+++ +..+++|+.- .|||++|+
T Consensus 75 i~r~--~-G~~~~~~~~~~~~~~~~~~-----~--------~---~-~~~~v~~li--~~~~Vvvf~Kg~~~~p~C~~C~ 132 (204)
T PTZ00062 75 INSL--E-GCNTSTLVSFIRGWAQKGS-----S--------E---D-TVEKIERLI--RNHKILLFMKGSKTFPFCRFSN 132 (204)
T ss_pred Eeee--e-CCCHHHHHHHHHHHcCCCC-----H--------H---H-HHHHHHHHH--hcCCEEEEEccCCCCCCChhHH
Confidence 3343 3 4678999999988764210 0 0 0 111223332 3456666554 37999999
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----CC-CCCCCcEEEEEeCCC
Q 018164 265 TTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KL-QVEEYPTLLFYPAGD 313 (360)
Q Consensus 265 ~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----~~-~i~~~Pti~~~~~g~ 313 (360)
++...|.+. ++.+..+|+..+ ++. ++ +..++|.+++ +|+
T Consensus 133 ~~k~~L~~~--------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~ 177 (204)
T PTZ00062 133 AVVNMLNSS--------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGE 177 (204)
T ss_pred HHHHHHHHc--------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 988777754 466778888766 332 11 5567788754 453
No 102
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=2.2e-11 Score=111.27 Aligned_cols=110 Identities=24% Similarity=0.430 Sum_probs=88.5
Q ss_pred CCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcC-CCCEEEEEEeCCCC---CCC-CCCCCC
Q 018164 228 TNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG-LDNLVIAKIDASAN---EHP-KLQVEE 302 (360)
Q Consensus 228 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~~---~~~-~~~i~~ 302 (360)
..++|..|+..+|+..+..+.+-.+|.||++|||+|..+.|.|+++|+.+.. ..-+.++.|||... .++ +++|++
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 4578999999999999998888999999999999999999999999999754 22589999999875 333 789999
Q ss_pred CcEEEEEeCCCccC--ceEecCCCCHHHHHHHHHHhc
Q 018164 303 YPTLLFYPAGDKAN--PIKVSARSSSKNIAAFIKEQL 337 (360)
Q Consensus 303 ~Pti~~~~~g~~~~--~~~~~g~~~~~~l~~~i~~~~ 337 (360)
||++.+|+.+.... .-.+.|.....++...+.+-+
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 99999998874421 124556666677777665544
No 103
>PRK09381 trxA thioredoxin; Provisional
Probab=99.17 E-value=2.7e-10 Score=85.53 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=86.4
Q ss_pred CceeecCcccccc-cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164 102 PLVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 179 (360)
Q Consensus 102 p~v~~l~~~~~~~-~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~ 179 (360)
..+.+++.++|.. +...+.++++.||++| +.|..+.+.|++++.++.+++.|+.+|++... .+++.+++... |+
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~-Pt 78 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIRGI-PT 78 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh---hHHHhCCCCcC-CE
Confidence 4567788888876 4556778899999999 99999999999999999988999999999875 88999999998 99
Q ss_pred eEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164 180 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLL 211 (360)
Q Consensus 180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~ 211 (360)
++++ ..+ ...+.+.|..+.+.|..|+...+
T Consensus 79 ~~~~-~~G-~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 79 LLLF-KNG-EVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEE-eCC-eEEEEecCCCCHHHHHHHHHHhc
Confidence 8544 433 33445678889999999998865
No 104
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.17 E-value=7e-10 Score=85.36 Aligned_cols=110 Identities=19% Similarity=0.246 Sum_probs=83.2
Q ss_pred CceeecCcccc-cccccCCCceEEEEEEec------cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHHhhcCC
Q 018164 102 PLVTKLTDINS-ASVHSSPIKLQVYVFAKA------DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGL 173 (360)
Q Consensus 102 p~v~~l~~~~~-~~~~~~~~~~~v~f~~~~------~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~~~gi 173 (360)
|-|.+++..+. ...... ..+-++.+-+. ...+++...++++|++|+++ +.|+++|...+. .+.+.||+
T Consensus 2 ~~~~~l~~~~~~~~~C~~-~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~---~~~~~fgl 77 (130)
T cd02983 2 PEIIELTSEDVFEETCEE-KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQL---DLEEALNI 77 (130)
T ss_pred CceEEecCHHHHHhhccC-CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccH---HHHHHcCC
Confidence 45667776655 334433 34545555553 34567889999999999999 999999999885 79999999
Q ss_pred CCCC-CceEEEEeCCCccccc-CCCCCCHHHHHHHHHHHhcCccCC
Q 018164 174 EESK-NTVVTAFDNKAISKFL-LESDLTPSNIEEFCSRLLHGTLTP 217 (360)
Q Consensus 174 ~~~~-p~~~~~~~~~~~~~y~-~~~~~~~~~i~~fi~~~~~g~~~~ 217 (360)
++.. |.+ ++.+...+ +|. +.|.++.++|.+|++++++|++..
T Consensus 78 ~~~~~P~v-~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~ 121 (130)
T cd02983 78 GGFGYPAM-VAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPT 121 (130)
T ss_pred CccCCCEE-EEEecccC-ccccccCccCHHHHHHHHHHHHcCCccc
Confidence 8543 555 56666544 887 789999999999999999999854
No 105
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2e-10 Score=97.46 Aligned_cols=107 Identities=23% Similarity=0.333 Sum_probs=92.6
Q ss_pred CCceeecCcccccccc---cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164 101 FPLVTKLTDINSASVH---SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES 176 (360)
Q Consensus 101 ~p~v~~l~~~~~~~~~---~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~ 176 (360)
.|.|.+.|..||+..+ +...|++|.|+++| ++|+++.+.+.+++..|+|++.++.|||+..+ .+...|||++.
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p---~vAaqfgiqsI 98 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP---MVAAQFGVQSI 98 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcch---hHHHHhCcCcC
Confidence 3458899999998743 23458999999999 99999999999999999999999999999887 99999999999
Q ss_pred CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164 177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG 213 (360)
Q Consensus 177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g 213 (360)
|+++++.++....-| .|....+.|.+|+..++..
T Consensus 99 -PtV~af~dGqpVdgF--~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 99 -PTVYAFKDGQPVDGF--QGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred -CeEEEeeCCcCcccc--CCCCcHHHHHHHHHHhcCh
Confidence 999888777655555 7888889999999998754
No 106
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.13 E-value=2.7e-10 Score=84.70 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=81.7
Q ss_pred eeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhc--CceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164 104 VTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180 (360)
Q Consensus 104 v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~--~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~ 180 (360)
+.++++.++...+..+.+++|.||++| ..|+++.+.+.++++.+. +.+.|+.+||+... +..+++.+||.++ |++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~i~~~-Pt~ 79 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE-HDALKEEYNVKGF-PTF 79 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc-cHHHHHhCCCccc-cEE
Confidence 567888888888888888999999999 999999999999999998 66899999999721 1389999999998 998
Q ss_pred EEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164 181 VTAFDNKAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi 207 (360)
+++ ..+. ....+.|..+.+.+.+|+
T Consensus 80 ~~~-~~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 80 KYF-ENGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEE-eCCC-eeEEeCCCCCHHHHHhhC
Confidence 544 4432 345568999999998875
No 107
>PRK10996 thioredoxin 2; Provisional
Probab=99.11 E-value=4.2e-10 Score=88.11 Aligned_cols=101 Identities=16% Similarity=0.235 Sum_probs=84.6
Q ss_pred eeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEE
Q 018164 104 VTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVT 182 (360)
Q Consensus 104 v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~ 182 (360)
+..++..+++.+...+.++++.||++| +.|+.+.+.|.++++++.+.+.|+.+|++..+ .+++.++|.+. |++++
T Consensus 37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~l~~~~~V~~~-Ptlii 112 (139)
T PRK10996 37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER---ELSARFRIRSI-PTIMI 112 (139)
T ss_pred CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH---HHHHhcCCCcc-CEEEE
Confidence 445777788887777888999999999 99999999999999999988999999999875 89999999999 99854
Q ss_pred EEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164 183 AFDNKAISKFLLESDLTPSNIEEFCSRL 210 (360)
Q Consensus 183 ~~~~~~~~~y~~~~~~~~~~i~~fi~~~ 210 (360)
+.++ .....+.|..+.+.|.+|++..
T Consensus 113 -~~~G-~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 113 -FKNG-QVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred -EECC-EEEEEEcCCCCHHHHHHHHHHh
Confidence 4433 2333457889999999999874
No 108
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.11 E-value=4.5e-10 Score=82.25 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=74.3
Q ss_pred cccccc-cC-CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCC
Q 018164 111 NSASVH-SS-PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK 187 (360)
Q Consensus 111 ~~~~~~-~~-~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~ 187 (360)
+|.+.+ +. +.++++.||++| .+|+.+.+.+.+++..+.+.+.|+.+|++... .+++.|+|.+. |+++++. .+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~i~~~-Pt~~~~~-~g 76 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP---QIAQQFGVQAL-PTVYLFA-AG 76 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH---HHHHHcCCCCC-CEEEEEe-CC
Confidence 344434 33 568899999999 99999999999999999988999999999875 89999999999 9996554 33
Q ss_pred CcccccCCCCCCHHHHHHHHH
Q 018164 188 AISKFLLESDLTPSNIEEFCS 208 (360)
Q Consensus 188 ~~~~y~~~~~~~~~~i~~fi~ 208 (360)
.....+.|..+.+.|..|++
T Consensus 77 -~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 77 -QPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred -EEeeeecCCCCHHHHHHHhC
Confidence 22234578889999998873
No 109
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.09 E-value=2.4e-10 Score=79.42 Aligned_cols=73 Identities=19% Similarity=0.380 Sum_probs=58.1
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEEEEEeCCCccCceEecCC-CCHHHHH
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSAR-SSSKNIA 330 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti~~~~~g~~~~~~~~~g~-~~~~~l~ 330 (360)
-|.||++||++|+.+.|.++++++.+.. .+.+..+| +.....++++.+.|++++ +|.. .+.|. .+.+.+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~-~~~~a~~~~v~~vPti~i--~G~~----~~~G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT-DMNEILEAGVTATPGVAV--DGEL----VIMGKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC-CHHHHHHcCCCcCCEEEE--CCEE----EEEeccCCHHHHH
Confidence 3789999999999999999999999975 68888887 222445789999999999 6644 37774 5668887
Q ss_pred HHH
Q 018164 331 AFI 333 (360)
Q Consensus 331 ~~i 333 (360)
++|
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 776
No 110
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.08 E-value=5.2e-10 Score=82.46 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=80.4
Q ss_pred ecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhh--cCceEEEEEeCCCcccchhHHhhcCCCCCCCceEE
Q 018164 106 KLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNF--KGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVT 182 (360)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~--~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~ 182 (360)
.++..++......+.+++++|+++| +.|+++.+.|.+++..+ .+.+.|+.+||+... .+++.+||..+ |++++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~i~~~-Pt~~~ 77 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN---DLCSEYGVRGY-PTIKL 77 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH---HHHHhCCCCCC-CEEEE
Confidence 4677788887777778999999999 99999999999999999 578999999999865 89999999998 99865
Q ss_pred EEeCCCcccccCCCCCCHHHHHHHH
Q 018164 183 AFDNKAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 183 ~~~~~~~~~y~~~~~~~~~~i~~fi 207 (360)
+ ..++.....+.|..+.+.|.+|+
T Consensus 78 ~-~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 78 F-PNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred E-cCCCcccccCCCCcCHHHHHhhC
Confidence 5 44324455568888999988874
No 111
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.08 E-value=5.3e-10 Score=82.24 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=69.9
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC-CcccchhHHhhcCCCCCCCceEEEEeCCCcccccCC
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA-DEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLE 195 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~-~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~ 195 (360)
.+++++|.||++| ++|+.+.+.|.++++++++ +.|+.+|++ .+. .+++.|+|.++ |++++ ++.+ ....+.
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~---~l~~~~~V~~~-PT~~l-f~~g--~~~~~~ 88 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKP---SLLSRYGVVGF-PTILL-FNST--PRVRYN 88 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCH---HHHHhcCCeec-CEEEE-EcCC--ceeEec
Confidence 5678899999999 9999999999999999986 889999998 564 89999999999 99954 4444 445568
Q ss_pred CCCCHHHHHHHH
Q 018164 196 SDLTPSNIEEFC 207 (360)
Q Consensus 196 ~~~~~~~i~~fi 207 (360)
|..+.+.|.+||
T Consensus 89 G~~~~~~l~~f~ 100 (100)
T cd02999 89 GTRTLDSLAAFY 100 (100)
T ss_pred CCCCHHHHHhhC
Confidence 999999999985
No 112
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.07 E-value=4.9e-10 Score=84.27 Aligned_cols=86 Identities=10% Similarity=0.165 Sum_probs=72.4
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCC
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLE 195 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~ 195 (360)
.+.+++|.||++| +.|+.+.+.|.++++++++ ++.|+.+|++... .+++.+||.++ |+++++. .+. ....+.
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~---~l~~~~~V~~~-Pt~~i~~-~g~-~~~~~~ 96 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER---RLARKLGAHSV-PAIVGII-NGQ-VTFYHD 96 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH---HHHHHcCCccC-CEEEEEE-CCE-EEEEec
Confidence 5678999999999 9999999999999999986 4999999999775 89999999999 9996554 332 333347
Q ss_pred CCCCHHHHHHHHHH
Q 018164 196 SDLTPSNIEEFCSR 209 (360)
Q Consensus 196 ~~~~~~~i~~fi~~ 209 (360)
|..+.+.|.+|+++
T Consensus 97 G~~~~~~l~~~i~~ 110 (111)
T cd02963 97 SSFTKQHVVDFVRK 110 (111)
T ss_pred CCCCHHHHHHHHhc
Confidence 88999999999875
No 113
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.02 E-value=1.8e-09 Score=79.67 Aligned_cols=97 Identities=18% Similarity=0.255 Sum_probs=77.1
Q ss_pred CcccccccccC-CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEe
Q 018164 108 TDINSASVHSS-PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD 185 (360)
Q Consensus 108 ~~~~~~~~~~~-~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~ 185 (360)
+.+++...... +.+.+++||++| ..|..+.+.|+++++++.+++.|+.+|++... .+++.||+... |+++++ .
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~-P~~~~~-~ 76 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP---DIAAKYGIRSI-PTLLLF-K 76 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH---HHHHHcCCCcC-CEEEEE-e
Confidence 34555554444 457889999999 99999999999999999988999999999875 88999999998 998655 4
Q ss_pred CCCcccccCCCCCCHHHHHHHHHHH
Q 018164 186 NKAISKFLLESDLTPSNIEEFCSRL 210 (360)
Q Consensus 186 ~~~~~~y~~~~~~~~~~i~~fi~~~ 210 (360)
.+. ....+.|..+.+.|.+|+++.
T Consensus 77 ~g~-~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 77 NGK-EVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred CCc-EeeeecCCCCHHHHHHHHHhh
Confidence 332 233446778889999999864
No 114
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.02 E-value=1.9e-09 Score=99.55 Aligned_cols=107 Identities=11% Similarity=0.101 Sum_probs=86.5
Q ss_pred cCCceeecCccccccccc---CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHH-hhcCC
Q 018164 100 KFPLVTKLTDINSASVHS---SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFL-TLFGL 173 (360)
Q Consensus 100 ~~p~v~~l~~~~~~~~~~---~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~-~~~gi 173 (360)
..+.|.+||+.||+..+. .+.+++|.||++| ++|+.+.+.|.++|+++.++ +.|+.+|++... ..++ +.|+|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--KEFAKQELQL 426 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc--cHHHHHHcCC
Confidence 345789999999999764 6678999999999 99999999999999999875 899999998653 1444 78999
Q ss_pred CCCCCceEEEEeCCCcccccCC-CCCCHHHHHHHHHHH
Q 018164 174 EESKNTVVTAFDNKAISKFLLE-SDLTPSNIEEFCSRL 210 (360)
Q Consensus 174 ~~~~p~~~~~~~~~~~~~y~~~-~~~~~~~i~~fi~~~ 210 (360)
..+ |+++++ ..+......|. |.++.+.|..||+..
T Consensus 427 ~~~-PTii~F-k~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSF-PTILFF-PKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred Ccc-ceEEEE-ECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 999 999644 44433445566 579999999999863
No 115
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.00 E-value=1.9e-09 Score=103.78 Aligned_cols=97 Identities=24% Similarity=0.496 Sum_probs=75.6
Q ss_pred cccccccc---ccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCCCC------CCCCCCCCcE
Q 018164 238 KTFDDLVL---NSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANEH------PKLQVEEYPT 305 (360)
Q Consensus 238 ~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~Pt 305 (360)
+++++.+. .++++++|.||++||.+|+.+.+.. .++.+.++ ++.+.++|++.++- .++++.++||
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGLPT 537 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence 45555553 2368999999999999999998865 56777775 58899999987632 3579999999
Q ss_pred EEEEe-CCCccCceEecCCCCHHHHHHHHHHhc
Q 018164 306 LLFYP-AGDKANPIKVSARSSSKNIAAFIKEQL 337 (360)
Q Consensus 306 i~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~~ 337 (360)
+++|+ +|+..+..++.|..+.+++.++|++..
T Consensus 538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred EEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 99996 455533457889999999999998753
No 116
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.99 E-value=3.5e-09 Score=78.69 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=75.9
Q ss_pred ccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEe
Q 018164 110 INSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD 185 (360)
Q Consensus 110 ~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~ 185 (360)
++|+.. ..+.++++.||++| +.|+.+.+.|.+++.++++ .+.++.+||+..+ .+++.++|.++ |+++++ .
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~I~~~-Pt~~l~-~ 80 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS---SIASEFGVRGY-PTIKLL-K 80 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH---hHHhhcCCccc-cEEEEE-c
Confidence 456654 34568899999999 9999999999999999953 4999999999875 89999999999 999654 4
Q ss_pred CCCcccccCCCCCCHHHHHHHHHHH
Q 018164 186 NKAISKFLLESDLTPSNIEEFCSRL 210 (360)
Q Consensus 186 ~~~~~~y~~~~~~~~~~i~~fi~~~ 210 (360)
++ ..+.+.|..+.+.|.+|+++.
T Consensus 81 ~~--~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 81 GD--LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred CC--CceeecCCCCHHHHHHHHHhh
Confidence 33 344568899999999999874
No 117
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.99 E-value=2.7e-09 Score=78.62 Aligned_cols=94 Identities=13% Similarity=0.131 Sum_probs=77.2
Q ss_pred eeecCcccccccccCCCceEEEEEEec---cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164 104 VTKLTDINSASVHSSPIKLQVYVFAKA---DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180 (360)
Q Consensus 104 v~~l~~~~~~~~~~~~~~~~v~f~~~~---~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~ 180 (360)
+.+++..||+.....+.+.++.|+++| ++|..+.+.|.++|++|.+++.|+.+|++..+ .++..|||.+. |++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~---~la~~f~V~sI-PTl 87 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ---ALAARFGVLRT-PAL 87 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH---HHHHHcCCCcC-CEE
Confidence 347889999998888888999999995 89999999999999999999999999999886 99999999999 999
Q ss_pred EEEEeCCCcccccCCCCCCHHHH
Q 018164 181 VTAFDNKAISKFLLESDLTPSNI 203 (360)
Q Consensus 181 ~~~~~~~~~~~y~~~~~~~~~~i 203 (360)
+++.++.. ...+.|..+.+.+
T Consensus 88 i~fkdGk~--v~~~~G~~~~~e~ 108 (111)
T cd02965 88 LFFRDGRY--VGVLAGIRDWDEY 108 (111)
T ss_pred EEEECCEE--EEEEeCccCHHHH
Confidence 65554432 2233566665544
No 118
>PLN02309 5'-adenylylsulfate reductase
Probab=98.95 E-value=4.1e-09 Score=97.40 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=85.8
Q ss_pred CCceeecCcccccccc---cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC-CcccchhHHh-hcCC
Q 018164 101 FPLVTKLTDINSASVH---SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA-DEDLAKPFLT-LFGL 173 (360)
Q Consensus 101 ~p~v~~l~~~~~~~~~---~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~-~~~~~~~l~~-~~gi 173 (360)
.+.|..++.++++.+. ..+.+++|.||++| ++|+.+.+.|.++|.++.+. +.|+.+||+ ... .++. .|+|
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~---~la~~~~~I 420 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK---EFAKQELQL 420 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch---HHHHhhCCC
Confidence 3578889999998865 46778999999999 99999999999999999864 999999999 543 7786 6999
Q ss_pred CCCCCceEEEEeCCCcccccCC-CCCCHHHHHHHHHHH
Q 018164 174 EESKNTVVTAFDNKAISKFLLE-SDLTPSNIEEFCSRL 210 (360)
Q Consensus 174 ~~~~p~~~~~~~~~~~~~y~~~-~~~~~~~i~~fi~~~ 210 (360)
.++ |+++++ ..+......|. +.++.++|..||+..
T Consensus 421 ~~~-PTil~f-~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSF-PTILLF-PKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred cee-eEEEEE-eCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999 999644 44433445566 469999999999864
No 119
>PHA02125 thioredoxin-like protein
Probab=98.94 E-value=2.2e-09 Score=74.49 Aligned_cols=67 Identities=13% Similarity=0.362 Sum_probs=49.8
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecC-CCCHHH
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSA-RSSSKN 328 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g-~~~~~~ 328 (360)
+++||++||++|+.+.|.+++++ +.++.+|++.+ ++ ..+++.++||++ .|..+ -++.| ..+..+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~--~~~~G~~~~~~~ 68 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTL--DRFTGVPRNVAE 68 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEE--EEEeCCCCcHHH
Confidence 78999999999999999987652 46788888777 44 468999999997 45443 25667 344455
Q ss_pred HHH
Q 018164 329 IAA 331 (360)
Q Consensus 329 l~~ 331 (360)
|.+
T Consensus 69 l~~ 71 (75)
T PHA02125 69 LKE 71 (75)
T ss_pred HHH
Confidence 544
No 120
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.93 E-value=1.1e-08 Score=80.23 Aligned_cols=104 Identities=10% Similarity=0.105 Sum_probs=81.3
Q ss_pred cccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCc
Q 018164 111 NSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI 189 (360)
Q Consensus 111 ~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~ 189 (360)
.+......+.+++|.||++| ..|+.+.+.+.++++++.+++.|+.||.+... ...+++.|+|.++ |+++ +++.++.
T Consensus 12 ~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~V~~i-Pt~v-~~~~~G~ 88 (142)
T cd02950 12 PPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYRVDGI-PHFV-FLDREGN 88 (142)
T ss_pred CHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcCCCCC-CEEE-EECCCCC
Confidence 34555567788999999999 99999999999999999888888888876432 1378899999998 9995 4443333
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCccCC
Q 018164 190 SKFLLESDLTPSNIEEFCSRLLHGTLTP 217 (360)
Q Consensus 190 ~~y~~~~~~~~~~i~~fi~~~~~g~~~~ 217 (360)
....+.|..+.+.|.+++..++.|.-.|
T Consensus 89 ~v~~~~G~~~~~~l~~~l~~l~~~~~~~ 116 (142)
T cd02950 89 EEGQSIGLQPKQVLAQNLDALVAGEPLP 116 (142)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHcCCCCC
Confidence 3444578888999999999999876333
No 121
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.93 E-value=6.8e-09 Score=82.07 Aligned_cols=87 Identities=11% Similarity=0.172 Sum_probs=61.7
Q ss_pred CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-----------CC-C-CC---CCCCCcEEEEEeC
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----------EH-P-KL---QVEEYPTLLFYPA 311 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------~~-~-~~---~i~~~Pti~~~~~ 311 (360)
.+..+|+||++||++|+...|.+++++++++- .+..+.+|.... .. . .+ ++.++||.+++.+
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~--~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL--PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCC--cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 45569999999999999999999999998842 344444443210 01 1 12 5788999999966
Q ss_pred CCccCceEecCCCCHHHHHHHHHHh
Q 018164 312 GDKANPIKVSARSSSKNIAAFIKEQ 336 (360)
Q Consensus 312 g~~~~~~~~~g~~~~~~l~~~i~~~ 336 (360)
.+......+.|..+.+.+.+.|.+.
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHh
Confidence 4332122578999999998888764
No 122
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.93 E-value=9.2e-10 Score=83.09 Aligned_cols=84 Identities=17% Similarity=0.403 Sum_probs=58.6
Q ss_pred ccCccEEEEEeCCCChhhHHHHHHHHHH---HHHhcCCCCEEEEEEeCCCCC---------------------C-CCCCC
Q 018164 246 NSHKDVLLEVYTPWCVTCETTSKQIEKL---AKHFKGLDNLVIAKIDASANE---------------------H-PKLQV 300 (360)
Q Consensus 246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~l---a~~~~~~~~~~~~~id~~~~~---------------------~-~~~~i 300 (360)
.++++++++|++|||++|+++.+.+... ...++. ++.++.+++.... + ..+++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 4678999999999999999999888864 344443 5777777776531 1 24599
Q ss_pred CCCcEEEEEe-CCCccCceEecCCCCHHHHHHHH
Q 018164 301 EEYPTLLFYP-AGDKANPIKVSARSSSKNIAAFI 333 (360)
Q Consensus 301 ~~~Pti~~~~-~g~~~~~~~~~g~~~~~~l~~~i 333 (360)
.++||++++. +|+.+ .++.|..+.++|.++|
T Consensus 81 ~gtPt~~~~d~~G~~v--~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIV--YRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEE--EEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEE--EEecCCCCHHHHHhhC
Confidence 9999999996 45553 4688999999998875
No 123
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.92 E-value=4.7e-09 Score=91.30 Aligned_cols=89 Identities=10% Similarity=0.181 Sum_probs=67.4
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----------CC-CCCCCCCCcEEEEEeC-CCc
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------EH-PKLQVEEYPTLLFYPA-GDK 314 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------~~-~~~~i~~~Pti~~~~~-g~~ 314 (360)
.++.++|+||++||++|+.+.|.++++++.+.- .+..+.+|.... .+ ..++|.++|+++++.. |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~--~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGI--EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCc--EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 367899999999999999999999999999852 344444443221 11 2569999999999987 555
Q ss_pred cCceEecCCCCHHHHHHHHHHhcC
Q 018164 315 ANPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 315 ~~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
+. ....|..+.+.|.+.|....+
T Consensus 243 v~-~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FT-PIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EE-EEEeCCCCHHHHHHHHHHHhc
Confidence 42 235589999999999987765
No 124
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.90 E-value=7.9e-09 Score=78.55 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=63.0
Q ss_pred cccCccEEEEEeCCCChhhHHHHHH-H--HHHHHHhcCCCCEEEEEEeCCCC-CCCC---------CCCCCCcEEEEEeC
Q 018164 245 LNSHKDVLLEVYTPWCVTCETTSKQ-I--EKLAKHFKGLDNLVIAKIDASAN-EHPK---------LQVEEYPTLLFYPA 311 (360)
Q Consensus 245 ~~~~~~~~v~f~~~~c~~c~~~~~~-~--~~la~~~~~~~~~~~~~id~~~~-~~~~---------~~i~~~Pti~~~~~ 311 (360)
...+++++|.|+++||+.|+.|.+. | .+++..++. ++.++.+|.+.+ ++.. +++.++|+++++..
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~ 89 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP 89 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 4678999999999999999999763 3 367777765 799999999876 4421 47889999999955
Q ss_pred -CCccCceEec-C--CCCHHHHHHHHHHh
Q 018164 312 -GDKANPIKVS-A--RSSSKNIAAFIKEQ 336 (360)
Q Consensus 312 -g~~~~~~~~~-g--~~~~~~l~~~i~~~ 336 (360)
|+.+....|- + ..+..++.+++...
T Consensus 90 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 90 DLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 4443222222 1 24445666666543
No 125
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.90 E-value=7e-10 Score=90.33 Aligned_cols=99 Identities=19% Similarity=0.434 Sum_probs=88.1
Q ss_pred ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEE
Q 018164 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF 308 (360)
Q Consensus 231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~ 308 (360)
.++.++..|+...+ .+.+++.|++|||..|+.+.+.|...|.--.+. .+.++.+|++.| .+. .|-++..|||+=
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL-~v~va~VDvt~npgLsGRF~vtaLptIYH 100 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDL-GVKVAKVDVTTNPGLSGRFLVTALPTIYH 100 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCC-ceeEEEEEEEeccccceeeEEEecceEEE
Confidence 57889999999987 889999999999999999999999998776654 799999999999 554 688999999999
Q ss_pred EeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164 309 YPAGDKANPIKVSARSSSKNIAAFIKEQ 336 (360)
Q Consensus 309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~ 336 (360)
.+.|.-. +|.|.|+.++++.|+...
T Consensus 101 vkDGeFr---rysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 101 VKDGEFR---RYSGARDKNDFISFEEHR 125 (248)
T ss_pred eeccccc---cccCcccchhHHHHHHhh
Confidence 9999775 799999999999999754
No 126
>PHA02278 thioredoxin-like protein
Probab=98.89 E-value=5.9e-09 Score=76.72 Aligned_cols=94 Identities=13% Similarity=0.193 Sum_probs=71.5
Q ss_pred ccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCccc-chhHHhhcCCCCCCCceEEEEeCC
Q 018164 110 INSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFDNK 187 (360)
Q Consensus 110 ~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~-~~~l~~~~gi~~~~p~~~~~~~~~ 187 (360)
+.|.+.+..+.+.+|.||++| ++|+.+.|.+.++++++..++.|+.+|.+..++ +..+++.|+|.+. |+++++.++.
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~i-PT~i~fk~G~ 83 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMST-PVLIGYKDGQ 83 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccc-cEEEEEECCE
Confidence 345666667788999999999 999999999999999876667889999886410 1278999999999 9996555443
Q ss_pred CcccccCCCCCCHHHHHHH
Q 018164 188 AISKFLLESDLTPSNIEEF 206 (360)
Q Consensus 188 ~~~~y~~~~~~~~~~i~~f 206 (360)
... .+.|..+.+.|.++
T Consensus 84 ~v~--~~~G~~~~~~l~~~ 100 (103)
T PHA02278 84 LVK--KYEDQVTPMQLQEL 100 (103)
T ss_pred EEE--EEeCCCCHHHHHhh
Confidence 222 33677777777665
No 127
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=4.5e-09 Score=96.38 Aligned_cols=221 Identities=15% Similarity=0.150 Sum_probs=132.6
Q ss_pred CceeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhc---CceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164 102 PLVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK---GKIMFTAVDIADEDLAKPFLTLFGLEES 176 (360)
Q Consensus 102 p~v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~---~~i~f~~vd~~~~~~~~~l~~~~gi~~~ 176 (360)
..|.+|+.++|...+ ..++..+|-||++| ++|..+.|.|+++|+... .-+.++.|||.... |..+|+.|+|+.+
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFSVSGY 117 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcCCCCC
Confidence 457889999998754 45557889999999 999999999999999887 35889999999763 6799999999999
Q ss_pred CCceEEEEeCCC-cccc--cCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEc-CccccccccccCccEE
Q 018164 177 KNTVVTAFDNKA-ISKF--LLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVV-GKTFDDLVLNSHKDVL 252 (360)
Q Consensus 177 ~p~~~~~~~~~~-~~~y--~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~-~~~~~~~~~~~~~~~~ 252 (360)
|++ .++.... ...+ .+.|.....+|...+..-++...-..... .+|. -.++..-+ ....++.+.+....+.
T Consensus 118 -Ptl-ryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~-~WP~--f~pl~~~~~~~~l~~~~~~~~~yvA 192 (606)
T KOG1731|consen 118 -PTL-RYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYP-SWPN--FDPLKDTTTLEELDEGISTTANYVA 192 (606)
T ss_pred -cee-eecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCC-CCCC--CCCCCCcchHHHHhcccccccceeE
Confidence 999 5665542 2111 12455556677777665443221110000 1121 01111111 1223333333344555
Q ss_pred EEE-eCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCCCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHH
Q 018164 253 LEV-YTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIA 330 (360)
Q Consensus 253 v~f-~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~ 330 (360)
+.| ..+. .--++.+-..+... .+.+..+-++++ ...+++.+..|+..+|++|... ++.- ...+.+...
T Consensus 193 iv~e~~~s-------~lg~~~~l~~l~~~-~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q-~l~~-~~~s~~~y~ 262 (606)
T KOG1731|consen 193 IVFETEPS-------DLGWANLLNDLPSK-QVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQ-PLWP-SSSSRSAYV 262 (606)
T ss_pred EEEecCCc-------ccHHHHHHhhccCC-CcceEEEecchhccccccCCCCchhhhhhcCCccc-cccc-ccccHHHHH
Confidence 555 3332 11345555555332 344444444444 5556899999999999999774 4432 233444445
Q ss_pred HHHHHhcC
Q 018164 331 AFIKEQLK 338 (360)
Q Consensus 331 ~~i~~~~~ 338 (360)
+-|.+.++
T Consensus 263 ~~I~~~lg 270 (606)
T KOG1731|consen 263 KKIDDLLG 270 (606)
T ss_pred HHHHHHhc
Confidence 55555444
No 128
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.89 E-value=1.5e-08 Score=75.23 Aligned_cols=73 Identities=19% Similarity=0.137 Sum_probs=61.8
Q ss_pred ccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCC
Q 018164 111 NSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK 187 (360)
Q Consensus 111 ~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~ 187 (360)
++...+. .+.+.+|.|+++| ++|+.+.+.|.++|.++.+.+.|+.||.++.+ .+.+.|||.+. |+++++.++.
T Consensus 4 ~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~---~la~~~~V~~i-PTf~~fk~G~ 79 (114)
T cd02954 4 AVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP---DFNKMYELYDP-PTVMFFFRNK 79 (114)
T ss_pred HHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH---HHHHHcCCCCC-CEEEEEECCE
Confidence 3444443 4567889999999 99999999999999999998999999999886 99999999998 9997665544
No 129
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.89 E-value=1e-08 Score=75.83 Aligned_cols=95 Identities=9% Similarity=0.036 Sum_probs=74.6
Q ss_pred cCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHHhhcCCCCCCCceEEEE
Q 018164 107 LTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF 184 (360)
Q Consensus 107 l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~ 184 (360)
-|.+++..+.+.+.+.++.||++| ++|+.+.+.+.+++.++.+. +.|+.+|++ .. .+++.|+|+.. |+++++.
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~---~~~~~~~v~~~-Pt~~~~~ 79 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI---DTLKRYRGKCE-PTFLFYK 79 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH---HHHHHcCCCcC-cEEEEEE
Confidence 456677777777888999999999 99999999999999999854 789999998 43 78999999999 9985544
Q ss_pred eCCCcccccCCCCCCHHHHHHHHHH
Q 018164 185 DNKAISKFLLESDLTPSNIEEFCSR 209 (360)
Q Consensus 185 ~~~~~~~y~~~~~~~~~~i~~fi~~ 209 (360)
++. ......| .+.+.+.++|..
T Consensus 80 -~g~-~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 80 -NGE-LVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred -CCE-EEEEEec-CChHHHHHHHhh
Confidence 332 2222344 588888888864
No 130
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.88 E-value=1.8e-08 Score=75.83 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=76.6
Q ss_pred eeecCc-ccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164 104 VTKLTD-INSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 181 (360)
Q Consensus 104 v~~l~~-~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~ 181 (360)
+..++. +.|...+..+.+.++.||++| ++|+.+.+.+.++++++.+ +.|+.||++... .+++.|+|... |+++
T Consensus 6 v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~---~l~~~~~v~~v-Pt~l 80 (113)
T cd02989 6 YREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAP---FLVEKLNIKVL-PTVI 80 (113)
T ss_pred eEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCH---HHHHHCCCccC-CEEE
Confidence 445555 566666666778899999999 9999999999999999976 999999999875 89999999999 9996
Q ss_pred EEEeCCCcccc----cC--CCCCCHHHHHHHH
Q 018164 182 TAFDNKAISKF----LL--ESDLTPSNIEEFC 207 (360)
Q Consensus 182 ~~~~~~~~~~y----~~--~~~~~~~~i~~fi 207 (360)
++.++....++ .+ .++++.+++..|+
T Consensus 81 ~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 81 LFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 66554322221 11 2457888888775
No 131
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.88 E-value=2.6e-08 Score=93.39 Aligned_cols=90 Identities=21% Similarity=0.358 Sum_probs=68.2
Q ss_pred ccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC----------------------------CCC-C
Q 018164 244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA----------------------------SAN-E 294 (360)
Q Consensus 244 ~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~----------------------------~~~-~ 294 (360)
.+..+++++|.|||+||++|+.+.|.++++++.++.. ++.+..|.. +.+ .
T Consensus 52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~ 130 (521)
T PRK14018 52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGT 130 (521)
T ss_pred eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHH
Confidence 3457889999999999999999999999999998742 455555432 111 1
Q ss_pred C-CCCCCCCCcEEEEE-eCCCccCceEecCCCCHHHHHHHHHHh
Q 018164 295 H-PKLQVEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQ 336 (360)
Q Consensus 295 ~-~~~~i~~~Pti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~ 336 (360)
+ ..+++.++|+++++ ++|+.+ ..+.|..+.+.|..+|+.-
T Consensus 131 lak~fgV~giPTt~IIDkdGkIV--~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 131 LAQSLNISVYPSWAIIGKDGDVQ--RIVKGSISEAQALALIRNP 172 (521)
T ss_pred HHHHcCCCCcCeEEEEcCCCeEE--EEEeCCCCHHHHHHHHHHh
Confidence 1 24589999999777 555443 4788999999999999843
No 132
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.85 E-value=2.4e-08 Score=75.88 Aligned_cols=104 Identities=13% Similarity=0.205 Sum_probs=84.5
Q ss_pred EEcCccccccccccCccEEEEEeCC--CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEE
Q 018164 234 IVVGKTFDDLVLNSHKDVLLEVYTP--WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFY 309 (360)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~v~f~~~--~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~ 309 (360)
.++..+++.++ ...+..+|+|-.. .+..+....-++.++++.+.+ .++.++++|++.+ .+. +++|.++||+++|
T Consensus 21 ~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~-~~v~~akVDiD~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 21 PVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred ccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC-CceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence 45567788876 5566666666543 356677888899999999964 2599999999999 664 7999999999999
Q ss_pred eCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164 310 PAGDKANPIKVSARSSSKNIAAFIKEQLKEKD 341 (360)
Q Consensus 310 ~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 341 (360)
++|+.+. ++.|.++.+.+.+||.+++..+.
T Consensus 99 kdGk~v~--~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 99 TGGNYRG--VLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred ECCEEEE--EEeCcCCHHHHHHHHHHHhcCcC
Confidence 9998863 78899999999999999988654
No 133
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.84 E-value=1.8e-08 Score=74.91 Aligned_cols=95 Identities=16% Similarity=0.096 Sum_probs=74.1
Q ss_pred cccccccCCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCccc-chhHHhhcCCCCCCCceEEEEe
Q 018164 111 NSASVHSSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFD 185 (360)
Q Consensus 111 ~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~~-~~~l~~~~gi~~~~p~~~~~~~ 185 (360)
.+.+....+.+++|+|+++| +.|+.+.+.+ .++++.+.+++.++.+|++.... ...+++.+++.++ |+++ ++.
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~-Pti~-~~~ 80 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGP-PTYL-FYG 80 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCC-CEEE-EEC
Confidence 45556667788999999999 9999999887 67888888789999999875210 1378899999998 9995 444
Q ss_pred C-CCcccccCCCCCCHHHHHHHH
Q 018164 186 N-KAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 186 ~-~~~~~y~~~~~~~~~~i~~fi 207 (360)
. ++.....+.|..+.+.|.+++
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHh
Confidence 3 334455668889999988876
No 134
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.82 E-value=1.8e-08 Score=74.59 Aligned_cols=95 Identities=9% Similarity=0.014 Sum_probs=68.8
Q ss_pred cccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC
Q 018164 110 INSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN 186 (360)
Q Consensus 110 ~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~ 186 (360)
+++...+. .+.+++|.||++| ++|+.+.+.|.++++++ +.+.|+.+|++..+-...+++.++|.+. |+++++.++
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~-Pt~~~~~~G 81 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEV-PHFLFYKDG 81 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcC-CEEEEEeCC
Confidence 34454443 2678889999999 99999999999999999 5699999998865212378999999999 998555333
Q ss_pred CCcccccCCCCCCHHHHHHHHHH
Q 018164 187 KAISKFLLESDLTPSNIEEFCSR 209 (360)
Q Consensus 187 ~~~~~y~~~~~~~~~~i~~fi~~ 209 (360)
. ....+.| ...+.|.+-+..
T Consensus 82 ~--~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 82 E--KIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred e--EEEEEeC-CCHHHHHHHHHh
Confidence 2 2333455 556666665543
No 135
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.82 E-value=3.6e-08 Score=74.39 Aligned_cols=82 Identities=21% Similarity=0.189 Sum_probs=66.2
Q ss_pred ceeecCcccccccccC-CCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164 103 LVTKLTDINSASVHSS-PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESK 177 (360)
Q Consensus 103 ~v~~l~~~~~~~~~~~-~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~gi~~~~ 177 (360)
.+.+++..+|...+.. +.++++.||++| ..|+.+.+.|++++.++++ .+.|+.+||.... +..+|+.+++..+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i~~~- 79 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFGVTGY- 79 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCCCCCC-
Confidence 4678899999987654 457889999999 9999999999999998863 5999999987432 2478999999999
Q ss_pred CceEEEEeC
Q 018164 178 NTVVTAFDN 186 (360)
Q Consensus 178 p~~~~~~~~ 186 (360)
|+++++..+
T Consensus 80 Pt~~lf~~~ 88 (114)
T cd02992 80 PTLRYFPPF 88 (114)
T ss_pred CEEEEECCC
Confidence 998644333
No 136
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.81 E-value=1.5e-07 Score=91.05 Aligned_cols=183 Identities=15% Similarity=0.194 Sum_probs=128.9
Q ss_pred CceEEEEEEec--cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEe-CCCcccccCCC
Q 018164 120 IKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD-NKAISKFLLES 196 (360)
Q Consensus 120 ~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~-~~~~~~y~~~~ 196 (360)
.+..+.+|.+. +.|.++...+++++ ...++|.+...|..... .+.+.||+... |++ .+.+ .+......|.|
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~---~~~~~~~v~~~-P~~-~i~~~~~~~~~i~f~g 439 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEP---ESETLPKITKL-PTV-ALLDDDGNYTGLKFHG 439 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccch---hhHhhcCCCcC-CEE-EEEeCCCcccceEEEe
Confidence 45555555544 47888888888888 44567999888876554 78899999877 877 4543 33223345567
Q ss_pred CCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccE-EEEEeCCCChhhHHHHHHHHHHHH
Q 018164 197 DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDV-LLEVYTPWCVTCETTSKQIEKLAK 275 (360)
Q Consensus 197 ~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~-~v~f~~~~c~~c~~~~~~~~~la~ 275 (360)
-..-.++..||...++-. .+. ..|+.+..+. +..-++++ +-.|.+++|++|......+.+++.
T Consensus 440 ~P~G~Ef~s~i~~i~~~~-------~~~--------~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~ 503 (555)
T TIGR03143 440 VPSGHELNSFILALYNAA-------GPG--------QPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIAS 503 (555)
T ss_pred cCccHhHHHHHHHHHHhc-------CCC--------CCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHH
Confidence 777788888998876421 111 1233333333 33335665 445689999999999999988887
Q ss_pred HhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHH
Q 018164 276 HFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFI 333 (360)
Q Consensus 276 ~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i 333 (360)
... ++..-.+|++.. ++. +++|.++|++++ +|.. .+.|..+.+++..||
T Consensus 504 ~~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~----~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 504 LNP---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQ----VYFGKKTIEEMLELI 554 (555)
T ss_pred hCC---CceEEEEECcccHHHHHhCCceecCEEEE--CCEE----EEeeCCCHHHHHHhh
Confidence 754 588888899888 665 899999999987 4533 578988999999887
No 137
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.80 E-value=5.4e-08 Score=79.52 Aligned_cols=102 Identities=16% Similarity=0.326 Sum_probs=75.9
Q ss_pred eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC------------------
Q 018164 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------------ 293 (360)
Q Consensus 232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------------------ 293 (360)
+..++++.+.--. -.+++++|+||++||+.|....+.+.++++.+.+. ++.+..++++..
T Consensus 46 ~~~~~g~~~~l~~-~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~ 123 (173)
T PRK03147 46 LTDLEGKKIELKD-LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPVA 123 (173)
T ss_pred eecCCCCEEeHHH-cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceEE
Confidence 4445555443221 24678999999999999999999999999999763 577787876532
Q ss_pred -----CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164 294 -----EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336 (360)
Q Consensus 294 -----~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~ 336 (360)
.+ ..+++..+|+++++..++++ ...+.|..+.+.+.+++.+.
T Consensus 124 ~d~~~~~~~~~~v~~~P~~~lid~~g~i-~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 124 IDKGRQVIDAYGVGPLPTTFLIDKDGKV-VKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred ECCcchHHHHcCCCCcCeEEEECCCCcE-EEEEeCCCCHHHHHHHHHHh
Confidence 11 24688999999999765554 33678999999999998753
No 138
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.80 E-value=2.2e-08 Score=78.94 Aligned_cols=81 Identities=11% Similarity=0.144 Sum_probs=67.3
Q ss_pred ceeecCccccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCC---
Q 018164 103 LVTKLTDINSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEE--- 175 (360)
Q Consensus 103 ~v~~l~~~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~--- 175 (360)
.+.++++++|..... .+.+++|.||++| ++|+.+.+.|.++++++.+ ++.|+.||+++.+ .+++.|+|..
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~---~la~~~~V~~~~~ 105 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP---NVAEKFRVSTSPL 105 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH---HHHHHcCceecCC
Confidence 567788888887653 2457899999999 9999999999999999985 5999999999886 8999999987
Q ss_pred ---CCCceEEEEeCC
Q 018164 176 ---SKNTVVTAFDNK 187 (360)
Q Consensus 176 ---~~p~~~~~~~~~ 187 (360)
+ |+++++.++.
T Consensus 106 v~~~-PT~ilf~~Gk 119 (152)
T cd02962 106 SKQL-PTIILFQGGK 119 (152)
T ss_pred cCCC-CEEEEEECCE
Confidence 7 9996555443
No 139
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.78 E-value=5.2e-08 Score=75.31 Aligned_cols=102 Identities=18% Similarity=0.127 Sum_probs=77.0
Q ss_pred ccccccc--cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC
Q 018164 110 INSASVH--SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN 186 (360)
Q Consensus 110 ~~~~~~~--~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~ 186 (360)
+.++..+ ..+.+.++-|+++| ++|+.+.|.|.++|+++.+.+.|+.||.++.+ ++++.|+|... ||++.++.+
T Consensus 12 ~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~---dla~~y~I~~~-~t~~~ffk~ 87 (142)
T PLN00410 12 WAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP---DFNTMYELYDP-CTVMFFFRN 87 (142)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH---HHHHHcCccCC-CcEEEEEEC
Confidence 3444433 24567889999999 99999999999999999998999999999886 99999999976 777645555
Q ss_pred CCcccccCCC--------CCCHHHHHHHHHHHhcCcc
Q 018164 187 KAISKFLLES--------DLTPSNIEEFCSRLLHGTL 215 (360)
Q Consensus 187 ~~~~~y~~~~--------~~~~~~i~~fi~~~~~g~~ 215 (360)
+....-...| ..+.+.|.+-++.++.|..
T Consensus 88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred CeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 4322222244 3677888888888776543
No 140
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.77 E-value=3.7e-08 Score=74.30 Aligned_cols=100 Identities=15% Similarity=0.252 Sum_probs=73.7
Q ss_pred CceeecCcccccccccCC---CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164 102 PLVTKLTDINSASVHSSP---IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK 177 (360)
Q Consensus 102 p~v~~l~~~~~~~~~~~~---~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~ 177 (360)
..+.+++.++|...+... .++++.||++| +.|+.+.+.++++|.++.+ +.|+.||++.. .+++.++|...
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~----~l~~~~~i~~~- 77 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA----FLVNYLDIKVL- 77 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh----HHHHhcCCCcC-
Confidence 346677777787655443 67889999999 9999999999999999975 89999999854 78999999999
Q ss_pred CceEEEEeCCCccccc----CC-CCCCHHHHHHHH
Q 018164 178 NTVVTAFDNKAISKFL----LE-SDLTPSNIEEFC 207 (360)
Q Consensus 178 p~~~~~~~~~~~~~y~----~~-~~~~~~~i~~fi 207 (360)
|+++++.++....++. +. ...+.+.|.+|+
T Consensus 78 Pt~~~f~~G~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 78 PTLLVYKNGELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred CEEEEEECCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 9996665543322221 11 235566666554
No 141
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.76 E-value=2.9e-08 Score=72.69 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=68.5
Q ss_pred ccccccccCC--CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC
Q 018164 110 INSASVHSSP--IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN 186 (360)
Q Consensus 110 ~~~~~~~~~~--~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~ 186 (360)
++++...... .++++.||++| ..|+++.+.|.+++.++...+.|+.+|++..+ .+++.|++... |+++++ ..
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~---~~~~~~~i~~~-Pt~~~~-~~ 77 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP---EISEKFEITAV-PTFVFF-RN 77 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH---HHHHhcCCccc-cEEEEE-EC
Confidence 4455555444 78889999999 99999999999999998778999999999775 89999999998 998554 43
Q ss_pred CCcccccCCCCCCHHHHHHHH
Q 018164 187 KAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 187 ~~~~~y~~~~~~~~~~i~~fi 207 (360)
+. ....+.| .+.+.|.+.|
T Consensus 78 g~-~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 78 GT-IVDRVSG-ADPKELAKKV 96 (97)
T ss_pred CE-EEEEEeC-CCHHHHHHhh
Confidence 32 2222233 5666666654
No 142
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.76 E-value=5e-08 Score=73.46 Aligned_cols=91 Identities=12% Similarity=0.152 Sum_probs=73.0
Q ss_pred cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCC
Q 018164 117 SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLE 195 (360)
Q Consensus 117 ~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~ 195 (360)
..+...+++|+++| +.|+.+.+.+.+++..+ +++.|..+|.+..+ .++..||+... |+++++.+++......+.
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~---~l~~~~~v~~v-Pt~~i~~~g~~~~~~~~~ 94 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDK---EKAEKYGVERV-PTTIFLQDGGKDGGIRYY 94 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCH---HHHHHcCCCcC-CEEEEEeCCeecceEEEE
Confidence 44556677778899 99999999999999988 56999999999775 89999999999 999655444333333557
Q ss_pred CCCCHHHHHHHHHHHhc
Q 018164 196 SDLTPSNIEEFCSRLLH 212 (360)
Q Consensus 196 ~~~~~~~i~~fi~~~~~ 212 (360)
|-.+...+.+||..+++
T Consensus 95 G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 95 GLPAGYEFASLIEDIVR 111 (113)
T ss_pred ecCchHHHHHHHHHHHh
Confidence 88888999999998764
No 143
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.73 E-value=8e-08 Score=79.23 Aligned_cols=86 Identities=17% Similarity=0.338 Sum_probs=64.0
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C-C-----------------------CCCCCC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-H-----------------------PKLQVE 301 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~-~-----------------------~~~~i~ 301 (360)
..++++|.||++||++|+...|.+.++++. ++.+..++.+.+ + . ..+++.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 141 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY 141 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC
Confidence 578999999999999999999999888642 355666654332 1 0 135788
Q ss_pred CCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164 302 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 302 ~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
++|+.+++..+.++ ..++.|..+.+.+.++|...+.
T Consensus 142 ~~P~t~vid~~G~i-~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 142 GAPETFLIDGNGII-RYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred cCCeEEEECCCceE-EEEEecCCCHHHHHHHHHHHHH
Confidence 99988887544443 3577899999999999888764
No 144
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.73 E-value=2.9e-08 Score=67.25 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=46.5
Q ss_pred EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEE
Q 018164 251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 308 (360)
Q Consensus 251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~ 308 (360)
-+++|+++||++|+.+.+.+++++.... ++.+..+|++.+ ++ ..+++.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 3678999999999999999999987542 699999999887 44 4689999999865
No 145
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.71 E-value=7.9e-08 Score=70.37 Aligned_cols=87 Identities=20% Similarity=0.235 Sum_probs=70.9
Q ss_pred ccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccC
Q 018164 116 HSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL 194 (360)
Q Consensus 116 ~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~ 194 (360)
...+.+++++|+++| ..|..+.+.++++++++.+++.++.+|++..+ .+++.+++.+. |+++++ ..+ .....+
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~---~l~~~~~v~~v-Pt~~i~-~~g-~~v~~~ 83 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ---EIAEAAGIMGT-PTVQFF-KDK-ELVKEI 83 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH---HHHHHCCCeec-cEEEEE-ECC-eEEEEE
Confidence 345667888999999 99999999999999999888999999998775 88999999988 998655 433 234445
Q ss_pred CCCCCHHHHHHHHH
Q 018164 195 ESDLTPSNIEEFCS 208 (360)
Q Consensus 195 ~~~~~~~~i~~fi~ 208 (360)
.|..+.+.|.+|++
T Consensus 84 ~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 SGVKMKSEYREFIE 97 (97)
T ss_pred eCCccHHHHHHhhC
Confidence 78888888888763
No 146
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.70 E-value=1.3e-07 Score=77.20 Aligned_cols=85 Identities=22% Similarity=0.341 Sum_probs=62.5
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------------C-CC-CCCCCC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-----------------------N-EH-PKLQVE 301 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------------~-~~-~~~~i~ 301 (360)
.+++++|+||++||++|+.+.|.++++++. ++.+..++.+. + .+ ..+++.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~ 136 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY 136 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence 578999999999999999999999888653 24444444321 1 11 245788
Q ss_pred CCcEEEEEe-CCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164 302 EYPTLLFYP-AGDKANPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 302 ~~Pti~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
++|+.+++. +|+. ..++.|..+.+.+.++|.+.++
T Consensus 137 ~~P~~~~id~~G~i--~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 137 GAPETFLVDGNGVI--LYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eCCeEEEEcCCceE--EEEEeccCCHHHHHHHHHHHhh
Confidence 999877774 5543 3467799999999999998764
No 147
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.69 E-value=6.8e-08 Score=75.11 Aligned_cols=68 Identities=22% Similarity=0.396 Sum_probs=52.5
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCCC--------------------------CC-CC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASANE--------------------------HP-KL 298 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~--------------------------~~-~~ 298 (360)
.++.++|.||++||++|+...|.++++++.+++. .++.+..++++.+. +. .+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3689999999999999999999999999998753 25666666554421 11 36
Q ss_pred CCCCCcEEEEEeCCCc
Q 018164 299 QVEEYPTLLFYPAGDK 314 (360)
Q Consensus 299 ~i~~~Pti~~~~~g~~ 314 (360)
++.++|+++++.++++
T Consensus 96 ~v~~iPt~~lid~~G~ 111 (132)
T cd02964 96 KVEGIPTLVVLKPDGD 111 (132)
T ss_pred CCCCCCEEEEECCCCC
Confidence 8999999999975544
No 148
>PTZ00051 thioredoxin; Provisional
Probab=98.66 E-value=8e-08 Score=70.49 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=62.4
Q ss_pred cCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEe
Q 018164 107 LTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD 185 (360)
Q Consensus 107 l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~ 185 (360)
-+.+++..+...+.++++.||++| ..|+.+.+.|.+++.++.+ +.|+.+|++... .+++.|++.+. |+++++.+
T Consensus 6 ~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~---~~~~~~~v~~~-Pt~~~~~~ 80 (98)
T PTZ00051 6 TSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELS---EVAEKENITSM-PTFKVFKN 80 (98)
T ss_pred cCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchH---HHHHHCCCcee-eEEEEEeC
Confidence 344566777777788899999999 9999999999999999875 999999999765 89999999998 99865543
No 149
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.66 E-value=8.6e-08 Score=74.44 Aligned_cols=68 Identities=24% Similarity=0.408 Sum_probs=52.2
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCC-C------------------------C-CCCC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN-E------------------------H-PKLQ 299 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~-~------------------------~-~~~~ 299 (360)
.+++++|+||++||+.|+.+.|.+.++.+.+++. .++.+..++++.+ + + ..++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3679999999999999999999999999988653 2566666665533 1 1 1468
Q ss_pred CCCCcEEEEEeCCCc
Q 018164 300 VEEYPTLLFYPAGDK 314 (360)
Q Consensus 300 i~~~Pti~~~~~g~~ 314 (360)
+.++|+++++.++++
T Consensus 97 v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 IEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCEEEEECCCCC
Confidence 999999999975444
No 150
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.66 E-value=1.7e-07 Score=70.81 Aligned_cols=90 Identities=14% Similarity=0.218 Sum_probs=70.5
Q ss_pred cccCccEEEEEeCCCChhhHHHHH-HH--HHHHHHhcCCCCEEEEEEeCCCCCC----CCCCCCCCcEEEEEeC--CCcc
Q 018164 245 LNSHKDVLLEVYTPWCVTCETTSK-QI--EKLAKHFKGLDNLVIAKIDASANEH----PKLQVEEYPTLLFYPA--GDKA 315 (360)
Q Consensus 245 ~~~~~~~~v~f~~~~c~~c~~~~~-~~--~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~Pti~~~~~--g~~~ 315 (360)
...+++++|+|+++||..|+.+.. .| .++.+.++. ++.+..+|.+..+. ..+++.++|+++++.. |..
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~- 90 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV- 90 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE-
Confidence 345789999999999999999865 44 467777765 78888899876432 2468999999999965 444
Q ss_pred CceEecCCCCHHHHHHHHHHhcC
Q 018164 316 NPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 316 ~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
..++.|..+.+.+.+.|++...
T Consensus 91 -l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 91 -LKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred -eEEEcCCCCHHHHHHHHHHHHh
Confidence 3478899999999999987653
No 151
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.65 E-value=1.9e-07 Score=70.93 Aligned_cols=68 Identities=10% Similarity=0.176 Sum_probs=47.8
Q ss_pred cccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcEEEEEeCCCc
Q 018164 245 LNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYPAGDK 314 (360)
Q Consensus 245 ~~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pti~~~~~g~~ 314 (360)
..++++++|+|+++||++|+.|.... .++.+.++. ++..+.++.+..+. ......++||++|+..+.+
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~~g~~vPtivFld~~g~ 91 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSPDGQYVPRIMFVDPSLT 91 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCccCcccCeEEEECCCCC
Confidence 45689999999999999999998765 356666654 57766777653321 1112367999999955444
No 152
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.64 E-value=1e-07 Score=69.46 Aligned_cols=67 Identities=25% Similarity=0.518 Sum_probs=50.2
Q ss_pred CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CCC-------------------------CCCC
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHP-------------------------KLQV 300 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~~-------------------------~~~i 300 (360)
+++++|+|||+||++|....|.+.++.+.+++..++.+..|..+.. ... .+++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4789999999999999999999999999998434788888887654 110 1157
Q ss_pred CCCcEEEEEeCCCc
Q 018164 301 EEYPTLLFYPAGDK 314 (360)
Q Consensus 301 ~~~Pti~~~~~g~~ 314 (360)
.++|+++++..+++
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 78899988866543
No 153
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.64 E-value=1.5e-07 Score=72.16 Aligned_cols=90 Identities=22% Similarity=0.400 Sum_probs=62.5
Q ss_pred EcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC---------------------CCC
Q 018164 235 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA---------------------SAN 293 (360)
Q Consensus 235 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~---------------------~~~ 293 (360)
+.++.+..... ..++++|.||++||+.|..+.|.+..+++.+. +....+|- +.+
T Consensus 8 ~~g~~~~~~~~-~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (123)
T cd03011 8 LDGEQFDLESL-SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVINDPD 82 (123)
T ss_pred CCCCEeeHHHh-CCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEECCC
Confidence 44444444332 35899999999999999999999999887742 22222221 122
Q ss_pred -CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHH
Q 018164 294 -EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAA 331 (360)
Q Consensus 294 -~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~ 331 (360)
.+ ..+++.++|+++++.+|+ + ...+.|..+.++|.+
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~g-i-~~~~~g~~~~~~~~~ 120 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGG-I-VFVTTGVTSEWGLRL 120 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCC-e-EEEEeccCCHHHHHh
Confidence 23 257999999999998776 4 456789888888764
No 154
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.64 E-value=1.6e-07 Score=67.65 Aligned_cols=90 Identities=19% Similarity=0.195 Sum_probs=70.7
Q ss_pred cccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCc
Q 018164 111 NSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI 189 (360)
Q Consensus 111 ~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~ 189 (360)
++...+....+.+++|+.+| ..|..+.+.++++++. .+.+.|+.+|++... .+++.+++.+. |+++++. .+.
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~---~~~~~~~v~~~-P~~~~~~-~g~- 74 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENP---ELAEEYGVRSI-PTFLFFK-NGK- 74 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCCh---hHHHhcCcccc-cEEEEEE-CCE-
Confidence 34455555577889999999 9999999999999999 567999999999765 89999999998 9986553 332
Q ss_pred ccccCCCCCCHHHHHHHH
Q 018164 190 SKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 190 ~~y~~~~~~~~~~i~~fi 207 (360)
....+.|..+.+.|.+|+
T Consensus 75 ~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 75 EVDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEEecCCCHHHHHHHh
Confidence 233346777888888886
No 155
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.61 E-value=2.1e-07 Score=71.86 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=55.3
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-----------------------CC-CC-CCCCCC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-----------------------AN-EH-PKLQVE 301 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-----------------------~~-~~-~~~~i~ 301 (360)
.+++++|+||++||+.|..+.|.+.++++.+ ++.++.++.+ .+ .+ ..+++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 3679999999999999999999999998775 2555555432 11 22 246889
Q ss_pred CCcEEEEEeCCCccCceEecCCCCHHHH
Q 018164 302 EYPTLLFYPAGDKANPIKVSARSSSKNI 329 (360)
Q Consensus 302 ~~Pti~~~~~g~~~~~~~~~g~~~~~~l 329 (360)
++|+.+++.+++++ ..++.|..+.+.|
T Consensus 100 ~~P~~~~ld~~G~v-~~~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGII-RYKHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceE-EEEEeccCChHhc
Confidence 99977777533343 3467888877654
No 156
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.61 E-value=2.6e-07 Score=75.06 Aligned_cols=103 Identities=14% Similarity=0.188 Sum_probs=79.8
Q ss_pred CCceeecCc-ccccccccCC---CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCC
Q 018164 101 FPLVTKLTD-INSASVHSSP---IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE 175 (360)
Q Consensus 101 ~p~v~~l~~-~~~~~~~~~~---~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~ 175 (360)
...+.+++. ++|...+... .+++|.||++| +.|+.+.+.|..+|.+|.. +.|+.||++.. .++..|+|..
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~~----~l~~~f~v~~ 135 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASAT----GASDEFDTDA 135 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccch----hhHHhCCCCC
Confidence 466778888 8887765433 37888999999 9999999999999999974 99999999864 6889999999
Q ss_pred CCCceEEEEeCCCccccc----C-CCCCCHHHHHHHHHH
Q 018164 176 SKNTVVTAFDNKAISKFL----L-ESDLTPSNIEEFCSR 209 (360)
Q Consensus 176 ~~p~~~~~~~~~~~~~y~----~-~~~~~~~~i~~fi~~ 209 (360)
. |+++++.++.....+. . ..+++.+.|..|+..
T Consensus 136 v-PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 136 L-PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred C-CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 8 9997666554322221 1 235889999988865
No 157
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.59 E-value=1.8e-07 Score=66.86 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=57.4
Q ss_pred cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHH
Q 018164 250 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSK 327 (360)
Q Consensus 250 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~ 327 (360)
.-+..|+++||++|..+.+.+.+++..+. ++.+..+|.+.. +. .+++|.++|++++ +|+. .+.|..+.+
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~----~~~G~~~~~ 84 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL----FGFGRMTLE 84 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE----EEeCCCCHH
Confidence 35778999999999999999999997764 689999998887 44 4789999999975 6644 456866666
Q ss_pred HHH
Q 018164 328 NIA 330 (360)
Q Consensus 328 ~l~ 330 (360)
++.
T Consensus 85 e~~ 87 (89)
T cd03026 85 EIL 87 (89)
T ss_pred HHh
Confidence 653
No 158
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.58 E-value=2.9e-07 Score=69.25 Aligned_cols=66 Identities=24% Similarity=0.536 Sum_probs=54.3
Q ss_pred CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC------------------------CC-CCCCCCC
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------------------EH-PKLQVEE 302 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------------------------~~-~~~~i~~ 302 (360)
+++++|+||++||++|....+.+.++...+.+ .++.++.++++.+ .+ ..+++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 67999999999999999999999999999863 3788999988773 12 2568889
Q ss_pred CcEEEEEeCCCc
Q 018164 303 YPTLLFYPAGDK 314 (360)
Q Consensus 303 ~Pti~~~~~g~~ 314 (360)
+|+++++..+.+
T Consensus 98 ~P~~~l~d~~g~ 109 (116)
T cd02966 98 LPTTFLIDRDGR 109 (116)
T ss_pred cceEEEECCCCc
Confidence 999999964444
No 159
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.56 E-value=1.7e-07 Score=73.23 Aligned_cols=68 Identities=13% Similarity=0.261 Sum_probs=52.3
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC------CCEEEEEEeCCCC-C-C-----------------------
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL------DNLVIAKIDASAN-E-H----------------------- 295 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~------~~~~~~~id~~~~-~-~----------------------- 295 (360)
..++++|+|||+||++|+...|.+.++.+++++. .++.+..|+.+.+ . .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4689999999999999999999999998877542 2578888876653 1 1
Q ss_pred --CCCCCCCCcEEEEEeCCCc
Q 018164 296 --PKLQVEEYPTLLFYPAGDK 314 (360)
Q Consensus 296 --~~~~i~~~Pti~~~~~g~~ 314 (360)
..+++.++|+++++...++
T Consensus 104 l~~~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGD 124 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCc
Confidence 0236778999999976544
No 160
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.4e-07 Score=66.87 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=64.9
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCC
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD 197 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~ 197 (360)
++..++.||++| ++|+.+.|.+.++|.+|.+ +.|+.+|+++. +.+++.++++.. |+++.+.++.....+ - +
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~---~~~~~~~~V~~~-PTf~f~k~g~~~~~~--v-G 92 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDEL---EEVAKEFNVKAM-PTFVFYKGGEEVDEV--V-G 92 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccC---HhHHHhcCceEe-eEEEEEECCEEEEEE--e-c
Confidence 466778899999 9999999999999999999 99999999983 599999999999 999666544433333 2 2
Q ss_pred CCHHHHHHHHHH
Q 018164 198 LTPSNIEEFCSR 209 (360)
Q Consensus 198 ~~~~~i~~fi~~ 209 (360)
.+...+.+.+..
T Consensus 93 a~~~~l~~~i~~ 104 (106)
T KOG0907|consen 93 ANKAELEKKIAK 104 (106)
T ss_pred CCHHHHHHHHHh
Confidence 445566655543
No 161
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.53 E-value=5.2e-08 Score=68.87 Aligned_cols=64 Identities=22% Similarity=0.590 Sum_probs=49.8
Q ss_pred cccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcEEEEEe
Q 018164 245 LNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYP 310 (360)
Q Consensus 245 ~~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pti~~~~ 310 (360)
...+++++|+|+++||+.|+.+...+ .++.+.+.+ ++.+..+|.+..+- ..+...++|+++++.
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 35689999999999999999998877 456665655 79999999977632 233336799999985
No 162
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.52 E-value=1.1e-06 Score=70.91 Aligned_cols=84 Identities=10% Similarity=0.150 Sum_probs=61.7
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC---CC-----------C-CCCC--CCCcEEEEEeCCCc
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN---EH-----------P-KLQV--EEYPTLLFYPAGDK 314 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~---~~-----------~-~~~i--~~~Pti~~~~~g~~ 314 (360)
+|.||++||++|++..|.+.+++++++ +.+..|..+.. .. . .+++ .++|+.+++..+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 778999999999999999999999984 34444443322 11 1 2353 59999999966555
Q ss_pred cCceEecCCCCHHHHHHHHHHhcCC
Q 018164 315 ANPIKVSARSSSKNIAAFIKEQLKE 339 (360)
Q Consensus 315 ~~~~~~~g~~~~~~l~~~i~~~~~~ 339 (360)
+..-.+.|..+.+.|.+.|.+.++.
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHhh
Confidence 3112578999999999999888765
No 163
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.52 E-value=1.9e-07 Score=86.93 Aligned_cols=97 Identities=24% Similarity=0.444 Sum_probs=71.8
Q ss_pred cccccccc-cCccEEEEEeCCCChhhHHHHHHHH-HHHHHhcCCCCEEEEEEeCCCCCC------CCCCCCCCcEEEEEe
Q 018164 239 TFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIE-KLAKHFKGLDNLVIAKIDASANEH------PKLQVEEYPTLLFYP 310 (360)
Q Consensus 239 ~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~-~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~Pti~~~~ 310 (360)
..++.+.+ ..++++|.|||+||-.||.+.+..- +....++ ..+++..+.|.++|+- .++++-+.|++++|+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh-cCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 44454422 2359999999999999999987654 2222222 2379999999999943 367999999999998
Q ss_pred CCCccCceEecCCCCHHHHHHHHHHhc
Q 018164 311 AGDKANPIKVSARSSSKNIAAFIKEQL 337 (360)
Q Consensus 311 ~g~~~~~~~~~g~~~~~~l~~~i~~~~ 337 (360)
.+... +....|.++.+.+.+++++..
T Consensus 543 ~~g~e-~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 543 PQGSE-PEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCCCc-CcCCcceecHHHHHHHHHHhc
Confidence 55443 334889999999999998753
No 164
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.49 E-value=4.8e-07 Score=93.25 Aligned_cols=89 Identities=21% Similarity=0.442 Sum_probs=70.3
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC---CC------------------------C-CC-CC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA---SA------------------------N-EH-PK 297 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~---~~------------------------~-~~-~~ 297 (360)
..++++|.|||+||++|+...|.++++++++++. ++.+..+.+ +. + .+ ..
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 4789999999999999999999999999999753 577766632 11 0 11 24
Q ss_pred CCCCCCcEEEEE-eCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164 298 LQVEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 298 ~~i~~~Pti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
+++.++|+++++ ++|+.+ .++.|....+.|.++|...+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv--~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLI--AQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEE--EEEecccCHHHHHHHHHHHHH
Confidence 688999999999 566553 468899999999999998865
No 165
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=98.47 E-value=9.6e-07 Score=62.45 Aligned_cols=81 Identities=15% Similarity=0.233 Sum_probs=63.4
Q ss_pred ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecC-CCC
Q 018164 2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSE-PDR 79 (360)
Q Consensus 2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~-~~~ 79 (360)
++.+.++|.. ++..+-.|||||.+.++.+++.|+.|| -+++++.|.+...... ...... +.| +++||+. ...
T Consensus 3 ef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~~~-~~~~~~---~~~-~i~frp~~~~~ 76 (91)
T cd03070 3 EFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGDVT-KPERPP---GDN-IIYFPPGHNAP 76 (91)
T ss_pred eecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEecccc-ccccCC---CCC-eEEECCCCCCC
Confidence 4788899988 888899999999999999999999999 7889999999776554 222222 334 6779975 344
Q ss_pred ccccCCCCC
Q 018164 80 YTGYEETFI 88 (360)
Q Consensus 80 ~~~y~g~~~ 88 (360)
...|.|.++
T Consensus 77 ~~~y~G~~t 85 (91)
T cd03070 77 DMVYLGSLT 85 (91)
T ss_pred ceEEccCCC
Confidence 478889874
No 166
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.46 E-value=2.5e-06 Score=62.95 Aligned_cols=90 Identities=11% Similarity=0.092 Sum_probs=68.1
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccC-C
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL-E 195 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~-~ 195 (360)
.+++.++-|+++| ++|+.+.+.|.++|.++++.+.|+.||.++.+ ++++.|+|... |+.+.+.++. ..+..+ .
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~---dva~~y~I~am-Ptfvffkngk-h~~~d~gt 87 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVP---VYTQYFDISYI-PSTIFFFNGQ-HMKVDYGS 87 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccH---HHHHhcCceeC-cEEEEEECCc-EEEEecCC
Confidence 4667888999999 99999999999999999877999999999886 99999999888 9996444443 222222 2
Q ss_pred CC--------CCHHHHHHHHHHHhc
Q 018164 196 SD--------LTPSNIEEFCSRLLH 212 (360)
Q Consensus 196 ~~--------~~~~~i~~fi~~~~~ 212 (360)
|+ -+.+.+..-++....
T Consensus 88 ~~~~k~~~~~~~k~~~idi~e~~yr 112 (114)
T cd02986 88 PDHTKFVGSFKTKQDFIDLIEVIYR 112 (114)
T ss_pred CCCcEEEEEcCchhHHHHHHHHHHc
Confidence 22 245666666665543
No 167
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.3e-07 Score=74.79 Aligned_cols=86 Identities=17% Similarity=0.363 Sum_probs=69.5
Q ss_pred CCceEEE-cCccccccc-cccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCC----
Q 018164 229 NANVQIV-VGKTFDDLV-LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQV---- 300 (360)
Q Consensus 229 ~~~v~~l-~~~~~~~~~-~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i---- 300 (360)
.+.++.. .++.+++.+ .+..+.|+|.|++.|...|..+.|.+.+|+.++.. +.++||++|+... +.. +++|
T Consensus 123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~-~~lkFGkvDiGrfpd~a~kfris~s~ 201 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN-NLLKFGKVDIGRFPDVAAKFRISLSP 201 (265)
T ss_pred chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC-CCCcccceeeccCcChHHheeeccCc
Confidence 4567777 445666655 34455899999999999999999999999999976 3899999999998 553 5644
Q ss_pred --CCCcEEEEEeCCCcc
Q 018164 301 --EEYPTLLFYPAGDKA 315 (360)
Q Consensus 301 --~~~Pti~~~~~g~~~ 315 (360)
..+||+.+|..|+.+
T Consensus 202 ~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGKEV 218 (265)
T ss_pred ccccCCeEEEEccchhh
Confidence 479999999999876
No 168
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.44 E-value=5.9e-07 Score=67.83 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=33.1
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEE
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKI 288 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~i 288 (360)
++++++|.||++||++|+...|.++++++.+.+ ++.+..+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEE
Confidence 368999999999999999999999999888765 4544444
No 169
>smart00594 UAS UAS domain.
Probab=98.43 E-value=1.9e-06 Score=65.86 Aligned_cols=93 Identities=10% Similarity=0.209 Sum_probs=67.9
Q ss_pred cccccc---cccCccEEEEEeCCCChhhHHHHHH-H--HHHHHHhcCCCCEEEEEEeCCCCCC----CCCCCCCCcEEEE
Q 018164 239 TFDDLV---LNSHKDVLLEVYTPWCVTCETTSKQ-I--EKLAKHFKGLDNLVIAKIDASANEH----PKLQVEEYPTLLF 308 (360)
Q Consensus 239 ~~~~~~---~~~~~~~~v~f~~~~c~~c~~~~~~-~--~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~Pti~~ 308 (360)
+|++.+ ....|.++|+|+++||..|..+... | .++.+.++. ++.+..+|.+..+- ..++++++|++.+
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence 444443 3457799999999999999998764 3 456666765 78888889877633 2569999999999
Q ss_pred EeCCC--cc-C-ceEecCCCCHHHHHHHH
Q 018164 309 YPAGD--KA-N-PIKVSARSSSKNIAAFI 333 (360)
Q Consensus 309 ~~~g~--~~-~-~~~~~g~~~~~~l~~~i 333 (360)
+.... .. . .-+..|..+.+.|+.+|
T Consensus 93 l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 93 VDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 94332 10 0 22577999999998876
No 170
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.41 E-value=2.6e-06 Score=60.08 Aligned_cols=78 Identities=8% Similarity=0.104 Sum_probs=65.0
Q ss_pred EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHH
Q 018164 123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPS 201 (360)
Q Consensus 123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~ 201 (360)
+.+|+.+| +.|+.+.+.+.+++..++..+.+..+|.+... .+++.+|+.+. |+++ + ++. ..+.|..+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~v-Pt~~-~-~g~----~~~~G~~~~~ 72 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP---QKAMEYGIMAV-PAIV-I-NGD----VEFIGAPTKE 72 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH---HHHHHcCCccC-CEEE-E-CCE----EEEecCCCHH
Confidence 56788899 99999999999999999888999999998775 88999999998 9984 3 321 2446888999
Q ss_pred HHHHHHHHH
Q 018164 202 NIEEFCSRL 210 (360)
Q Consensus 202 ~i~~fi~~~ 210 (360)
.|.++++..
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 999988764
No 171
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.38 E-value=2.3e-06 Score=70.46 Aligned_cols=103 Identities=14% Similarity=0.187 Sum_probs=78.3
Q ss_pred ccCCceeecCcccccccc-cCC--CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCC
Q 018164 99 NKFPLVTKLTDINSASVH-SSP--IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE 174 (360)
Q Consensus 99 ~~~p~v~~l~~~~~~~~~-~~~--~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~ 174 (360)
.....|.+++..+|...+ ..+ .+++|.||++| +.|+.+.+.|..+|.+|.. +.|+.||++. .+..|++.
T Consensus 79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~------~~~~~~i~ 151 (192)
T cd02988 79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQ------CIPNYPDK 151 (192)
T ss_pred CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHH------hHhhCCCC
Confidence 446788889998887643 332 36788999999 9999999999999999975 9999999863 35789999
Q ss_pred CCCCceEEEEeCCCcccc----cCCC-CCCHHHHHHHHHH
Q 018164 175 ESKNTVVTAFDNKAISKF----LLES-DLTPSNIEEFCSR 209 (360)
Q Consensus 175 ~~~p~~~~~~~~~~~~~y----~~~~-~~~~~~i~~fi~~ 209 (360)
.. |++++|.++.....+ .+.| .++.+.|..++.+
T Consensus 152 ~l-PTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 152 NL-PTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CC-CEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 88 999766665432222 1233 5788898888765
No 172
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.38 E-value=1.9e-06 Score=66.29 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=73.5
Q ss_pred cccCC-CceEEEEEEec-cchHHHHHHHH---HHHHhhcCceEEEEEeCCCcc----------cchhHHhhcCCCCCCCc
Q 018164 115 VHSSP-IKLQVYVFAKA-DDLKSLLEPLE---DIARNFKGKIMFTAVDIADED----------LAKPFLTLFGLEESKNT 179 (360)
Q Consensus 115 ~~~~~-~~~~v~f~~~~-~~~~~~~~~~~---~la~~~~~~i~f~~vd~~~~~----------~~~~l~~~~gi~~~~p~ 179 (360)
....+ ++.+|.|+++| +.|+.+.+.+. .+...+++.+.++.+|.+... -...++..|++... |+
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~-Pt 87 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFT-PT 87 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccc-cE
Confidence 34455 78999999999 99999998874 677777777888999877430 01378899999998 99
Q ss_pred eEEEEeCC-CcccccCCCCCCHHHHHHHHHHHhcC
Q 018164 180 VVTAFDNK-AISKFLLESDLTPSNIEEFCSRLLHG 213 (360)
Q Consensus 180 ~~~~~~~~-~~~~y~~~~~~~~~~i~~fi~~~~~g 213 (360)
++ +++.+ +.....+.|..+.+.+.++++.++++
T Consensus 88 ~~-~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 88 VI-FLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred EE-EEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 85 55544 33344557888999999999998865
No 173
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.36 E-value=6.6e-06 Score=60.61 Aligned_cols=104 Identities=19% Similarity=0.403 Sum_probs=74.0
Q ss_pred ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHH-HHhcCCCCEEEEEEeCCCC-CC------CCCCC--
Q 018164 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA-KHFKGLDNLVIAKIDASAN-EH------PKLQV-- 300 (360)
Q Consensus 231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la-~~~~~~~~~~~~~id~~~~-~~------~~~~i-- 300 (360)
....|+.-||++++ ...+.+||.|=... +-=.-+..|.++| +.....+++.+|.+-+... +- .++++
T Consensus 5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred ceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 45678889999998 55689999994322 1122356788999 5555555899999988765 22 24566
Q ss_pred CCCcEEEEEeCCCccCceEe--cCCCCHHHHHHHHHHhcC
Q 018164 301 EEYPTLLFYPAGDKANPIKV--SARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 301 ~~~Pti~~~~~g~~~~~~~~--~g~~~~~~l~~~i~~~~~ 338 (360)
..||.+++|..| ..+|++| .|..+.++|.+|++++++
T Consensus 82 e~fPv~~LF~~~-~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGD-KEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESS-TTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCC-CCCCccCCccCCccHHHHHHHHHhCCC
Confidence 679999999944 4479999 899999999999999865
No 174
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.32 E-value=1.9e-06 Score=65.66 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=70.4
Q ss_pred ceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc---c-----chhHHhhcCC
Q 018164 103 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED---L-----AKPFLTLFGL 173 (360)
Q Consensus 103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~---~-----~~~l~~~~gi 173 (360)
-+..++.+.+...+.++...+++|+++| ++|+.+.|.|.+++++. ++.|.++|.+... . -..+.+.+++
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 3456777777777777778899999999 99999999999999984 4667777766321 0 0144566654
Q ss_pred C----CCCCceEEEEeCCCcccccCCC-CCCHHHHHHHHH
Q 018164 174 E----ESKNTVVTAFDNKAISKFLLES-DLTPSNIEEFCS 208 (360)
Q Consensus 174 ~----~~~p~~~~~~~~~~~~~y~~~~-~~~~~~i~~fi~ 208 (360)
. +. |+++++.++....+. .| ..+.+.|.+|+.
T Consensus 85 ~~~i~~~-PT~v~~k~Gk~v~~~--~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGT-PTFVHITDGKQVSVR--CGSSTTAQELQDIAA 121 (122)
T ss_pred cccCCCC-CEEEEEeCCeEEEEE--eCCCCCHHHHHHHhh
Confidence 4 46 999655554433333 45 567999988864
No 175
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.26 E-value=6.8e-06 Score=70.96 Aligned_cols=110 Identities=23% Similarity=0.332 Sum_probs=77.2
Q ss_pred CCceEEEcC-ccccccccccC--ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCCCCCCCCCc
Q 018164 229 NANVQIVVG-KTFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPKLQVEEYP 304 (360)
Q Consensus 229 ~~~v~~l~~-~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~~~~i~~~P 304 (360)
-+.|..++. ..|-+.+.... ..|+|+||.+.+..|..|...|..||.++. .++|++|..+.- .++.|.+..+|
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp---~vKFvkI~a~~~~~~~~f~~~~LP 200 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP---EVKFVKIRASKCPASENFPDKNLP 200 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T---TSEEEEEEECGCCTTTTS-TTC-S
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEEehhccCcccCCcccCCC
Confidence 467888864 77888774433 368999999999999999999999999997 589999998764 45688999999
Q ss_pred EEEEEeCCCccCc-eEec---C-CCCHHHHHHHHHHhcCCCC
Q 018164 305 TLLFYPAGDKANP-IKVS---A-RSSSKNIAAFIKEQLKEKD 341 (360)
Q Consensus 305 ti~~~~~g~~~~~-~~~~---g-~~~~~~l~~~i~~~~~~~~ 341 (360)
||++|++|..+.- +.+. | ..+...|..||.++--.+.
T Consensus 201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~~ 242 (265)
T PF02114_consen 201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLPE 242 (265)
T ss_dssp EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS-
T ss_pred EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCCC
Confidence 9999999976521 2221 2 5777899999987765443
No 176
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.25 E-value=5.5e-05 Score=73.40 Aligned_cols=186 Identities=8% Similarity=0.008 Sum_probs=130.6
Q ss_pred HHHHHHhhh--CCeEEEEEecCCC---CccHHHHHHHHhcCCCceEEE---eccHHHHHHcCCCCCCCCCEEEEEecCC-
Q 018164 7 NEAEEFLKK--YQTFVLGMFKKFE---GSDYEEFVKTAAADNEIQFVE---TSNFEVAKVLYPDIKSTDHFLGIVKSEP- 77 (360)
Q Consensus 7 ~~~~~~~~~--~~~~vv~ff~~~~---~~~~~~f~~~a~~~~~~~F~~---~~~~~~~~~~~~~~~~~~p~i~~~~~~~- 77 (360)
++|+.++.. +++.++.|..+.+ .+..+..+++|.+.+.+++-. .++++++++|+++ ..|++.+++..+
T Consensus 355 ~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~---~~P~~~i~~~~~~ 431 (555)
T TIGR03143 355 QQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKIT---KLPTVALLDDDGN 431 (555)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCC---cCCEEEEEeCCCc
Confidence 556666663 5677777776543 244556667888888888754 3567889999997 679999996433
Q ss_pred CCccccCCCCChHHHHHHHhh---ccCCceeecCcccccccccCCCceEE-EEEEec-cchHHHHHHHHHHHHhhcCceE
Q 018164 78 DRYTGYEETFIMDKILQFLNY---NKFPLVTKLTDINSASVHSSPIKLQV-YVFAKA-DDLKSLLEPLEDIARNFKGKIM 152 (360)
Q Consensus 78 ~~~~~y~g~~~~~~l~~fi~~---~~~p~v~~l~~~~~~~~~~~~~~~~v-~f~~~~-~~~~~~~~~~~~la~~~~~~i~ 152 (360)
...+.|.|--.=.++..||.. .+-+ -..++++..+.+-.-+.+..+ +|+.++ +.|.+....+.++|.... +|.
T Consensus 432 ~~~i~f~g~P~G~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~ 509 (555)
T TIGR03143 432 YTGLKFHGVPSGHELNSFILALYNAAGP-GQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVE 509 (555)
T ss_pred ccceEEEecCccHhHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-Cce
Confidence 334677764444567777653 2323 235677666666555566545 456777 999999999999999977 499
Q ss_pred EEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164 153 FTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 153 f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi 207 (360)
.-.+|...++ .+++.|+|... |+++ .+.. ..+.|..+.+.|..|+
T Consensus 510 ~~~i~~~~~~---~~~~~~~v~~v-P~~~--i~~~----~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 510 AEMIDVSHFP---DLKDEYGIMSV-PAIV--VDDQ----QVYFGKKTIEEMLELI 554 (555)
T ss_pred EEEEECcccH---HHHHhCCceec-CEEE--ECCE----EEEeeCCCHHHHHHhh
Confidence 9999999886 99999999998 8883 3321 2235778998888876
No 177
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.24 E-value=1e-05 Score=61.64 Aligned_cols=105 Identities=8% Similarity=0.075 Sum_probs=78.0
Q ss_pred ccCCceeecCcccccccccCCCceEEEEEEec----cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCC
Q 018164 99 NKFPLVTKLTDINSASVHSSPIKLQVYVFAKA----DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGL 173 (360)
Q Consensus 99 ~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~----~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi 173 (360)
+..|.+.. .+++.+...+.. .++|+... ..+....-.+.+++++|.+ ++.|+.||.+.++ .++..|||
T Consensus 17 ~g~~~~~~---~~~~~~~~~~~~-~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~---~LA~~fgV 89 (132)
T PRK11509 17 RGWTPVSE---SRLDDWLTQAPD-GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE---AIGDRFGV 89 (132)
T ss_pred cCCCcccc---ccHHHHHhCCCc-EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH---HHHHHcCC
Confidence 45665544 667777655543 45555543 4456677789999999984 5999999999886 99999999
Q ss_pred CCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164 174 EESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG 213 (360)
Q Consensus 174 ~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g 213 (360)
.+. |+++++.+++....+ .|-.+.+.+.+||..++..
T Consensus 90 ~si-PTLl~FkdGk~v~~i--~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 90 FRF-PATLVFTGGNYRGVL--NGIHPWAELINLMRGLVEP 126 (132)
T ss_pred ccC-CEEEEEECCEEEEEE--eCcCCHHHHHHHHHHHhcC
Confidence 999 999655554433333 6888999999999999864
No 178
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.22 E-value=1.3e-05 Score=68.01 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=66.2
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-------C--CC-----CC----C------C---
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------N--EH-----PK----L------Q--- 299 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------~--~~-----~~----~------~--- 299 (360)
.+++++|.||++||+.|....|.+.++.+++++. ++.+.-|+++. . ++ .+ + .
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 3589999999999999999999999999999763 57777777531 0 00 00 1 1
Q ss_pred ---------------------CCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164 300 ---------------------VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 300 ---------------------i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
+...|+.+++..++++ ..+|.|..+.+.|.+.|++.+.
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkV-v~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKV-VERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcE-EEEECCCCCHHHHHHHHHHHhc
Confidence 1224788888555554 3578899999999999988764
No 179
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.22 E-value=4.5e-06 Score=64.23 Aligned_cols=43 Identities=28% Similarity=0.499 Sum_probs=37.2
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~ 290 (360)
..++++|+||++||+.|....|.+.++.++++.. ++.+..+..
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-GLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-CeEEEEecc
Confidence 4689999999999999999999999999999853 677777754
No 180
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.18 E-value=1.7e-05 Score=61.04 Aligned_cols=101 Identities=12% Similarity=0.126 Sum_probs=77.1
Q ss_pred CccCCHHHHHHHhhhCCeEEEEEecCC-C------CccHHHHHHHH-hcCCC-ceEEEecc---HHHHHHcCCCCCCCCC
Q 018164 1 MRTNTVNEAEEFLKKYQTFVLGMFKKF-E------GSDYEEFVKTA-AADNE-IQFVETSN---FEVAKVLYPDIKSTDH 68 (360)
Q Consensus 1 ~~i~s~~~~~~~~~~~~~~vv~ff~~~-~------~~~~~~f~~~a-~~~~~-~~F~~~~~---~~~~~~~~~~~~~~~p 68 (360)
|++++.+.++..=.++.+.+|+|++.. + ......|.++| ++++. +.|+.+.. ..+.+.+|+.. .+.|
T Consensus 5 ~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~-~~~P 83 (130)
T cd02983 5 IELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG-FGYP 83 (130)
T ss_pred EEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc-cCCC
Confidence 467788888777777889999999753 1 14577899999 77788 89988543 34888999862 2689
Q ss_pred EEEEEecCCCCccccCCCCChHHHHHHHhhccCC
Q 018164 69 FLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFP 102 (360)
Q Consensus 69 ~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p 102 (360)
++++++..+.++..+.|+++.++|.+|+......
T Consensus 84 ~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 84 AMVAINFRKMKFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred EEEEEecccCccccccCccCHHHHHHHHHHHHcC
Confidence 9999998544444478999999999999975544
No 181
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.15 E-value=1.6e-05 Score=65.81 Aligned_cols=85 Identities=15% Similarity=0.282 Sum_probs=56.3
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEe-------------CC------CCCC-CCCCCCCCcEE
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID-------------AS------ANEH-PKLQVEEYPTL 306 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id-------------~~------~~~~-~~~~i~~~Pti 306 (360)
.+++++|+||++||+.|+...|.+.++.+.... ++.++..| .+ ..++ ..+++...|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 467899999999999999999999998766432 45444321 00 0011 24588899999
Q ss_pred EEEeCCCccCceEecCC-CCHHHHHHHHHHh
Q 018164 307 LFYPAGDKANPIKVSAR-SSSKNIAAFIKEQ 336 (360)
Q Consensus 307 ~~~~~g~~~~~~~~~g~-~~~~~l~~~i~~~ 336 (360)
+++..++++ .+.|. .+.+.+.+.++..
T Consensus 151 ~lID~~G~I---~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKI---RAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeE---EEccCCCCHHHHHHHHHHH
Confidence 888654443 45554 4556666666543
No 182
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.14 E-value=8.4e-06 Score=67.87 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=65.3
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-------C--CCC----CCCC-------------
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------N--EHP----KLQV------------- 300 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------~--~~~----~~~i------------- 300 (360)
..++++|.||++||+.|....|.+.++.+++++. ++.+..++++. + ++. ++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~ 116 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE 116 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence 3679999999999999999999999999999763 58888887631 1 111 1111
Q ss_pred -----------------------CCCc---EEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164 301 -----------------------EEYP---TLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD 341 (360)
Q Consensus 301 -----------------------~~~P---ti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 341 (360)
..+| +.+++.+.+.+ ..++.|..+.+.|.+.|.+.++.++
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~i-v~~~~g~~~~~~l~~~I~~ll~~~~ 182 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNV-VAYFSPRTEPLELEKKIAELLGVKD 182 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcE-EEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 1122 45566444343 2477888899999999998887553
No 183
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.09 E-value=1.2e-05 Score=60.47 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=53.3
Q ss_pred CCceEEEEEE-------ec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc----cchhHHhhcCCC-CCCCceEEE
Q 018164 119 PIKLQVYVFA-------KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED----LAKPFLTLFGLE-ESKNTVVTA 183 (360)
Q Consensus 119 ~~~~~v~f~~-------~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~----~~~~l~~~~gi~-~~~p~~~~~ 183 (360)
+.+.+|.|++ +| ++|+.+.+.+++++.++.+++.|+.||.+..+ -+.++...++|. +. |+++++
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~i-PT~~~~ 97 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGV-PTLLRW 97 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCC-CEEEEE
Confidence 5688999999 89 99999999999999999977999999987521 013778889998 77 999655
No 184
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.8e-05 Score=65.58 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=76.5
Q ss_pred eeecCcccccccccC-C-CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164 104 VTKLTDINSASVHSS-P-IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180 (360)
Q Consensus 104 v~~l~~~~~~~~~~~-~-~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~ 180 (360)
+..-++..|..-++. + +-++|-|++.| ++|+.+.|.|..+|.+|++ ..|..||.++.. ..+..+||+.. ||+
T Consensus 4 i~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~---~taa~~gV~am-PTF 78 (288)
T KOG0908|consen 4 IVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECR---GTAATNGVNAM-PTF 78 (288)
T ss_pred EEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhh---chhhhcCcccC-ceE
Confidence 333444455554433 2 35678899999 9999999999999999986 899999998774 88889999999 999
Q ss_pred EEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164 181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG 213 (360)
Q Consensus 181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g 213 (360)
+.+.+.. +...-...+...|+.-|..|.+.
T Consensus 79 iff~ng~---kid~~qGAd~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 79 IFFRNGV---KIDQIQGADASGLEEKVAKYAST 108 (288)
T ss_pred EEEecCe---EeeeecCCCHHHHHHHHHHHhcc
Confidence 6555443 33222457888899999888753
No 185
>PLN02412 probable glutathione peroxidase
Probab=98.08 E-value=4.3e-05 Score=61.85 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=65.1
Q ss_pred CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-------C--CC-----CC----CC----------
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------N--EH-----PK----LQ---------- 299 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------~--~~-----~~----~~---------- 299 (360)
.++++|.||++||+.|....|.+.++.+++++. ++.+.-|.++. . ++ .+ |.
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 589999999999999999999999999999864 57777776531 0 11 01 11
Q ss_pred --------------------CCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164 300 --------------------VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 300 --------------------i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
+...|+.+++.+++++ ..++.|..+.+.|.+.|.+.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~v-v~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKV-VQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcE-EEEECCCCCHHHHHHHHHHHHh
Confidence 2335788888555454 3477899999999999988765
No 186
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.07 E-value=0.00013 Score=70.30 Aligned_cols=177 Identities=13% Similarity=0.107 Sum_probs=117.7
Q ss_pred CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCC
Q 018164 120 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL 198 (360)
Q Consensus 120 ~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~ 198 (360)
.++-+.+|.+. +.|.++...+++++.--. +|.+-..+ . . ... |++ .+...+......|.|-.
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-~i~~~~~~---~----~-------~~~-p~~-~~~~~~~~~~i~f~g~P 81 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLSD-KITVEEDS---L----D-------VRK-PSF-SITRPGEDTGVRFAGIP 81 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEcc---C----C-------CCC-CEE-EEEcCCccceEEEEecC
Confidence 34545566655 678888888888877654 57663311 1 1 122 776 44443333345557777
Q ss_pred CHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCcc-EEEEEeCCCChhhHHHHHHHHHHHHHh
Q 018164 199 TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKD-VLLEVYTPWCVTCETTSKQIEKLAKHF 277 (360)
Q Consensus 199 ~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~ 277 (360)
.-.++..||...++- |.+ -..|+.+..+. +..-+++ -+..|+++.|++|......+.+++..-
T Consensus 82 ~g~Ef~s~i~~i~~~-------~~~--------~~~l~~~~~~~-i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~ 145 (517)
T PRK15317 82 MGHEFTSLVLALLQV-------GGH--------PPKLDQEVIEQ-IKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN 145 (517)
T ss_pred ccHHHHHHHHHHHHh-------cCC--------CCCCCHHHHHH-HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC
Confidence 788899999887641 111 11233333333 2232444 488899999999999999999998753
Q ss_pred cCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164 278 KGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 278 ~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
. ++..-.+|...+ ++ .++++.++|++++ +|.. .+.|..+.+.|.+.+.+...
T Consensus 146 ~---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~----~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 146 P---NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE----FGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred C---CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE----EEecCCCHHHHHHHHhcccc
Confidence 2 788999999888 55 4789999999975 5543 58899999999888877554
No 187
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.06 E-value=1.6e-05 Score=52.63 Aligned_cols=58 Identities=22% Similarity=0.558 Sum_probs=47.5
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-----CCCCCCCCcEEEEEeCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-----PKLQVEEYPTLLFYPAG 312 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----~~~~i~~~Pti~~~~~g 312 (360)
++.|+++||++|..+.+.+.++ ..... ++.+..++++...- ..+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCC--CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 33333 79999999988732 24588899999999877
No 188
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.05 E-value=1.8e-05 Score=62.64 Aligned_cols=77 Identities=16% Similarity=0.368 Sum_probs=54.9
Q ss_pred cCccEEEEEeCC-CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----------------------CCCCCC-
Q 018164 247 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----------------------PKLQVE- 301 (360)
Q Consensus 247 ~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----------------------~~~~i~- 301 (360)
..++++|.||+. ||++|....|.+.++.+.++.. ++.+..+..+.+ .+ ..+++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 478899999999 9999999999999999887653 455655554333 11 123666
Q ss_pred --------CCcEEEEEeCCCccCceEecCCCC
Q 018164 302 --------EYPTLLFYPAGDKANPIKVSARSS 325 (360)
Q Consensus 302 --------~~Pti~~~~~g~~~~~~~~~g~~~ 325 (360)
++|+++++.+++++ ...+.|...
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V-~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKV-VYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBE-EEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEE-EEEEeCCCC
Confidence 89999999777675 234445443
No 189
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.03 E-value=4.3e-05 Score=62.20 Aligned_cols=90 Identities=12% Similarity=0.255 Sum_probs=66.7
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC---------CC----------------------
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN---------EH---------------------- 295 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~---------~~---------------------- 295 (360)
.+++++|+||++||+.|....+.+.++...+++. ++.+..+..+.. .+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 5688999999999999999999999999999752 688888876431 00
Q ss_pred CCCCCCCCcEEEEEeCCCccCceEec-----------CCCCHHHHHHHHHHhcCCC
Q 018164 296 PKLQVEEYPTLLFYPAGDKANPIKVS-----------ARSSSKNIAAFIKEQLKEK 340 (360)
Q Consensus 296 ~~~~i~~~Pti~~~~~g~~~~~~~~~-----------g~~~~~~l~~~i~~~~~~~ 340 (360)
..+++...|+++++..++++ .|. +..+.+.+.+-|...+...
T Consensus 103 ~~~~v~~~P~~~lid~~G~v---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKL---VYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HHcCCCcCCcEEEECCCCeE---EEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 02367789999999655553 333 2346688888888877654
No 190
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.01 E-value=1.6e-05 Score=54.58 Aligned_cols=67 Identities=15% Similarity=0.379 Sum_probs=49.7
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC------CCCCCCCCcEEEEEeCCCccCceEecCCCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH------PKLQVEEYPTLLFYPAGDKANPIKVSARSS 325 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~ 325 (360)
+.+|+++||++|..+.+.+.+. ++.+..+|++.+.- ..+++.++|++++. | . .+.| .+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~-~----~~~g-~~ 65 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H-K----IIVG-FD 65 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C-E----EEee-CC
Confidence 5689999999999998877652 57788889887622 13588999999874 3 2 2555 47
Q ss_pred HHHHHHHHH
Q 018164 326 SKNIAAFIK 334 (360)
Q Consensus 326 ~~~l~~~i~ 334 (360)
.+.|.++|+
T Consensus 66 ~~~i~~~i~ 74 (74)
T TIGR02196 66 PEKLDQLLE 74 (74)
T ss_pred HHHHHHHhC
Confidence 788888774
No 191
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.00 E-value=1.9e-05 Score=54.78 Aligned_cols=68 Identities=18% Similarity=0.323 Sum_probs=45.7
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-C-----CCCCCCcEEEEEeCCCccCceEecCCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-K-----LQVEEYPTLLFYPAGDKANPIKVSARS 324 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~-----~~i~~~Pti~~~~~g~~~~~~~~~g~~ 324 (360)
+++|+++||++|..+++.+.++ .+.+-.+|++.+ ... . +++.++|++ ++.+|... ...
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~--------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l------~~~ 66 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL--------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL------TNP 66 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe------cCC
Confidence 5789999999999999988766 244556787766 222 2 377899997 46666332 244
Q ss_pred CHHHHHHHHH
Q 018164 325 SSKNIAAFIK 334 (360)
Q Consensus 325 ~~~~l~~~i~ 334 (360)
+..++.+.|.
T Consensus 67 ~~~~~~~~l~ 76 (77)
T TIGR02200 67 SAAQVKAKLQ 76 (77)
T ss_pred CHHHHHHHhh
Confidence 5556655543
No 192
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.99 E-value=2.7e-05 Score=53.95 Aligned_cols=72 Identities=19% Similarity=0.404 Sum_probs=53.3
Q ss_pred EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCCCCCCCCCcEEEEEeCCCccCceEecC-CCCHHHHH
Q 018164 253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPKLQVEEYPTLLFYPAGDKANPIKVSA-RSSSKNIA 330 (360)
Q Consensus 253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~~~~i~~~Pti~~~~~g~~~~~~~~~g-~~~~~~l~ 330 (360)
|.+++++|..|..+...+++++..+. +.+-.+|.... ++.++++.++|++++ +|+ +.+.| ..+.+.|.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~----~~~~G~~p~~~el~ 72 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEIEKYGVMSVPALVI--NGK----VVFVGRVPSKEELK 72 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHHHHTT-SSSSEEEE--TTE----EEEESS--HHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHHHHcCCCCCCEEEE--CCE----EEEEecCCCHHHHH
Confidence 34478899999999999999988883 45555666444 556789999999955 553 47899 88889999
Q ss_pred HHHH
Q 018164 331 AFIK 334 (360)
Q Consensus 331 ~~i~ 334 (360)
+||+
T Consensus 73 ~~l~ 76 (76)
T PF13192_consen 73 ELLE 76 (76)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9884
No 193
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.98 E-value=3.9e-05 Score=54.14 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=67.2
Q ss_pred ccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCC-CCCceEEEEeCCC
Q 018164 110 INSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE-SKNTVVTAFDNKA 188 (360)
Q Consensus 110 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~-~~p~~~~~~~~~~ 188 (360)
..|.+++.....++++|..+..+-...+..|.++|+..+|+-++++|||.+.+ .+.+|+.+.+.+ ..|--+.+.+-.+
T Consensus 10 KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp~~~~LkHYKd 88 (112)
T cd03067 10 KDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKPKPVELKHYKD 88 (112)
T ss_pred HHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCCCcchhhcccC
Confidence 34566666655555555444466777788999999999999999999999754 579999999982 2122222333332
Q ss_pred cccc-cCCCCCCHHHHHHHHHH
Q 018164 189 ISKF-LLESDLTPSNIEEFCSR 209 (360)
Q Consensus 189 ~~~y-~~~~~~~~~~i~~fi~~ 209 (360)
+... .|+-..+..+|.+|+++
T Consensus 89 G~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 89 GDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred CCccccccchhhHHHHHHHhhC
Confidence 2222 23556899999999876
No 194
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.98 E-value=2.7e-05 Score=58.56 Aligned_cols=66 Identities=27% Similarity=0.711 Sum_probs=55.0
Q ss_pred CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-CC-CC-CCCC--CCCCcEEEEEeCCCcc
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EH-PKLQ--VEEYPTLLFYPAGDKA 315 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~-~~-~~~~--i~~~Pti~~~~~g~~~ 315 (360)
.+++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. .+ +. ..+. +..+|++.++.+|...
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 102 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV 102 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence 67888888999999999999999999999986 6888999986 44 33 3456 8889999988887653
No 195
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.93 E-value=4e-05 Score=64.43 Aligned_cols=82 Identities=17% Similarity=0.278 Sum_probs=60.2
Q ss_pred CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----------CC-CCCCCCCCcEEEEEeCCC-cc
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------EH-PKLQVEEYPTLLFYPAGD-KA 315 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------~~-~~~~i~~~Pti~~~~~g~-~~ 315 (360)
++-.|++||.+.|+.|..+.|++..+++.+.= .+..+.+|.... ++ ..+++..+|+++++..+. ..
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~--~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGF--SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC--EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 66789999999999999999999999999943 455555553211 11 246899999999997765 33
Q ss_pred CceEecCCCCHHHHHHH
Q 018164 316 NPIKVSARSSSKNIAAF 332 (360)
Q Consensus 316 ~~~~~~g~~~~~~l~~~ 332 (360)
.|+ -.|..+.++|.+=
T Consensus 198 ~pv-~~G~~s~~~L~~r 213 (215)
T PF13728_consen 198 YPV-SQGFMSLDELEDR 213 (215)
T ss_pred EEE-eeecCCHHHHHHh
Confidence 333 3488898888763
No 196
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.88 E-value=0.00019 Score=59.02 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=34.1
Q ss_pred CccE-EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC
Q 018164 248 HKDV-LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290 (360)
Q Consensus 248 ~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~ 290 (360)
.+++ ++.+|++||+.|....|.+.++.+++++. ++.+..+++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~ 82 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPC 82 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEec
Confidence 5554 45669999999999999999999999763 577777765
No 197
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.88 E-value=0.00022 Score=56.81 Aligned_cols=87 Identities=9% Similarity=0.082 Sum_probs=61.2
Q ss_pred CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--------C-CC----CC-CC--------------
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--------N-EH----PK-LQ-------------- 299 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--------~-~~----~~-~~-------------- 299 (360)
.++++|.||++||+.|..-.|.+.++.+.++.. ++.+..+++.. . .+ .+ ++
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 578999999999999999999999999999753 67787777511 0 01 00 10
Q ss_pred ------------CCCCcE----EEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164 300 ------------VEEYPT----LLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336 (360)
Q Consensus 300 ------------i~~~Pt----i~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~ 336 (360)
..++|+ .+++.+++++ ...|.|..+.+.|.+.|.+.
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v-~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQV-VKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcE-EEEECCCCCHHHHHHHHHHh
Confidence 113675 5666444443 35788999999988888764
No 198
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.86 E-value=0.00068 Score=65.32 Aligned_cols=178 Identities=15% Similarity=0.152 Sum_probs=115.7
Q ss_pred CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCC
Q 018164 120 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL 198 (360)
Q Consensus 120 ~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~ 198 (360)
.+..+.+|.+. +.|+++...+++++..- ++|.+..-+... ... |++ .+...+......|.|-.
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~-------------~~~-p~~-~~~~~~~~~~i~f~g~P 82 (515)
T TIGR03140 19 NPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTADT-------------LRK-PSF-TILRDGADTGIRFAGIP 82 (515)
T ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCCc-------------CCC-CeE-EEecCCcccceEEEecC
Confidence 34445555555 67888888888877765 457774432110 122 666 44433333344556777
Q ss_pred CHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCcc-EEEEEeCCCChhhHHHHHHHHHHHHHh
Q 018164 199 TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKD-VLLEVYTPWCVTCETTSKQIEKLAKHF 277 (360)
Q Consensus 199 ~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~ 277 (360)
.-.++..||...++-. .+ -..|+.+..+.+ ..-+++ -+-.|.++.|++|......+.+++..-
T Consensus 83 ~g~Ef~s~i~~i~~~~-------~~--------~~~l~~~~~~~~-~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~ 146 (515)
T TIGR03140 83 GGHEFTSLVLAILQVG-------GH--------GPKLDEGIIDRI-RRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN 146 (515)
T ss_pred CcHHHHHHHHHHHHhc-------CC--------CCCCCHHHHHHH-HhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence 7788899998876421 11 112333333333 232344 478899999999999988888888764
Q ss_pred cCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164 278 KGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 278 ~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
. ++..-.+|...+ ++ .++++.++|++++ +|.. .+.|..+.+.+.+.+.+..+
T Consensus 147 p---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~----~~~g~~~~~~~~~~l~~~~~ 200 (515)
T TIGR03140 147 P---NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE----FHNGRMDLAELLEKLEETAG 200 (515)
T ss_pred C---CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE----EEecCCCHHHHHHHHhhccC
Confidence 3 688888898888 55 4789999999976 4543 57899999988887776643
No 199
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.80 E-value=0.00011 Score=54.88 Aligned_cols=101 Identities=12% Similarity=0.100 Sum_probs=75.1
Q ss_pred eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHH---hcCCCCEEEEEEeCCCCCC--CCCCCCC--Cc
Q 018164 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH---FKGLDNLVIAKIDASANEH--PKLQVEE--YP 304 (360)
Q Consensus 232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~---~~~~~~~~~~~id~~~~~~--~~~~i~~--~P 304 (360)
|+.++.+|...+. .++.+..++|+++ ..-..+...+.++|+. +++ ++.|+.+|.+..+. ..++++. +|
T Consensus 1 ~~e~t~e~~~~~~-~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELT-EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKG--AINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHh-cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCc--eEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 4567777887654 6666666666633 3346788999999999 888 79999999988742 3567775 99
Q ss_pred EEEEEeCCCccCceE-ecCCCCHHHHHHHHHHhcC
Q 018164 305 TLLFYPAGDKANPIK-VSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 305 ti~~~~~g~~~~~~~-~~g~~~~~~l~~~i~~~~~ 338 (360)
.+.+....... .+. +.+..+.++|.+|+++.+.
T Consensus 76 ~i~i~~~~~~~-Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 76 VIAIDSFRHMY-LFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEEcchhcC-cCCCCccccCHHHHHHHHHHHhc
Confidence 99998765422 233 5689999999999998765
No 200
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.79 E-value=0.00043 Score=51.21 Aligned_cols=93 Identities=16% Similarity=0.259 Sum_probs=67.6
Q ss_pred HHHHHhhhCCeEEEEEecCC-CCccHHHHHHHH-hc---CCCceEEEe--------ccHHHHHHcCCCCCCCCCEEEEEe
Q 018164 8 EAEEFLKKYQTFVLGMFKKF-EGSDYEEFVKTA-AA---DNEIQFVET--------SNFEVAKVLYPDIKSTDHFLGIVK 74 (360)
Q Consensus 8 ~~~~~~~~~~~~vv~ff~~~-~~~~~~~f~~~a-~~---~~~~~F~~~--------~~~~~~~~~~~~~~~~~p~i~~~~ 74 (360)
.+++++...+.++|-|=-.. -++..+.|.++| +. -+++-++.+ .|.+++++|++.- ..+|.+.+|+
T Consensus 13 tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k-e~fPv~~LF~ 91 (126)
T PF07912_consen 13 TFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK-EDFPVIYLFV 91 (126)
T ss_dssp HHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC-CC-SEEEEEE
T ss_pred ehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc-ccCCEEEEec
Confidence 35788999999999773211 356778888888 43 477777663 4788999999962 2579999999
Q ss_pred cCCCCcccc--CCCCChHHHHHHHhhccC
Q 018164 75 SEPDRYTGY--EETFIMDKILQFLNYNKF 101 (360)
Q Consensus 75 ~~~~~~~~y--~g~~~~~~l~~fi~~~~~ 101 (360)
...+.++.| +|+++.+.|.+|++.++-
T Consensus 92 ~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 92 GDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp SSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred CCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 666778888 799999999999998753
No 201
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00032 Score=53.91 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=67.5
Q ss_pred cccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCC-CC-----------------CCCCCCCC
Q 018164 245 LNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASAN-EH-----------------PKLQVEEY 303 (360)
Q Consensus 245 ~~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~-~~-----------------~~~~i~~~ 303 (360)
...++..+++|-++.|..|.++...+ .++-+.+.+ ++.+++++++.. .+ ..++++++
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 35578899999999999999998776 456666776 788888887654 11 13478999
Q ss_pred cEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164 304 PTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 304 Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
||+++|...++. .....|.+..+++...++=..+
T Consensus 117 PtfvFfdk~Gk~-Il~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 117 PTFVFFDKTGKT-ILELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred ceEEEEcCCCCE-EEecCCCCCHHHHHHHHHHHHH
Confidence 999999665442 3455699999988877664443
No 202
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.76 E-value=0.00036 Score=59.79 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=64.3
Q ss_pred CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----------CCCCCCCCcEEEEEeCCCc-c
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----------PKLQVEEYPTLLFYPAGDK-A 315 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----------~~~~i~~~Pti~~~~~g~~-~ 315 (360)
++-.|++||.+.|++|.++.|+++.+++.+.- .+..+.+|.... .+ ..++++.+|++++...+.. .
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI--SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 45789999999999999999999999999954 444555554322 21 1457899999999876644 3
Q ss_pred CceEecCCCCHHHHHHHHHHhcC
Q 018164 316 NPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 316 ~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
.|+. .|..+.++|.+-|...++
T Consensus 228 ~pv~-~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 228 SPLA-YGFISQDELKERILNVLT 249 (256)
T ss_pred EEEe-eccCCHHHHHHHHHHHHh
Confidence 3343 389999999887765544
No 203
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.70 E-value=8.7e-05 Score=55.66 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=59.5
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHH---HHHhhcCceEEEEEeCCCcc-----------------cchhHHhhcCCCCC
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLED---IARNFKGKIMFTAVDIADED-----------------LAKPFLTLFGLEES 176 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~---la~~~~~~i~f~~vd~~~~~-----------------~~~~l~~~~gi~~~ 176 (360)
++.+.+++|+++| +.|+++.+.+.. +...++.++.++.++..... ....+.+.+||.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 4667889999999 999999888774 56666667888888776431 01358899999999
Q ss_pred CCceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164 177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi 207 (360)
|+++ +.+.++...+.+.|..+.+.|.+++
T Consensus 84 -Pt~~-~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 -PTIV-FLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SEEE-ECTTTSCEEEEEESS--HHHHHHHH
T ss_pred -CEEE-EEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9994 5654433344567889999888764
No 204
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00023 Score=61.17 Aligned_cols=114 Identities=15% Similarity=0.324 Sum_probs=86.2
Q ss_pred CCceEEEcCccccccccccCc--cEEEEEeCC----CChhhHHHHHHHHHHHHHhcCC------CCEEEEEEeCCCC-CC
Q 018164 229 NANVQIVVGKTFDDLVLNSHK--DVLLEVYTP----WCVTCETTSKQIEKLAKHFKGL------DNLVIAKIDASAN-EH 295 (360)
Q Consensus 229 ~~~v~~l~~~~~~~~~~~~~~--~~~v~f~~~----~c~~c~~~~~~~~~la~~~~~~------~~~~~~~id~~~~-~~ 295 (360)
...|..+++++|..++...++ .++|+|.|. .|.-|+....++.-+|..++.. .++-|+.||.++. ++
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 356889999999999976665 478888765 5999999999999999987432 2688999998886 32
Q ss_pred -CCCCCCCCcEEEEEeC--CCccCceEecC---CCCHHHHHHHHHHhcCCCCC
Q 018164 296 -PKLQVEEYPTLLFYPA--GDKANPIKVSA---RSSSKNIAAFIKEQLKEKDQ 342 (360)
Q Consensus 296 -~~~~i~~~Pti~~~~~--g~~~~~~~~~g---~~~~~~l~~~i~~~~~~~~~ 342 (360)
+.+++.+.|++++|+. |++.++..+.+ ...+|++.+|+.+.++....
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 5679999999999932 33333333332 34489999999999876653
No 205
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.69 E-value=0.00047 Score=58.74 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=65.9
Q ss_pred CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----------CCCCCCCCcEEEEEeCCCc-c
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----------PKLQVEEYPTLLFYPAGDK-A 315 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----------~~~~i~~~Pti~~~~~g~~-~ 315 (360)
++..|++||.+.|++|.++.|+++.+++.+.- .+.-+.+|.... .+ ..+++..+|++++...+.. .
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 45789999999999999999999999999964 566666665333 22 1458889999999977653 3
Q ss_pred CceEecCCCCHHHHHHHHHHhcC
Q 018164 316 NPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 316 ~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
.|+. .|..+.++|.+-|...++
T Consensus 221 ~pv~-~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 221 RPLS-YGFITQDDLAKRFLNVST 242 (248)
T ss_pred EEEe-eccCCHHHHHHHHHHHHh
Confidence 3443 388999999887765543
No 206
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.68 E-value=0.00012 Score=53.33 Aligned_cols=83 Identities=17% Similarity=0.334 Sum_probs=61.7
Q ss_pred cccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC-CCCCCCCcEEEEEeCCCccCceEecCC
Q 018164 245 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP-KLQVEEYPTLLFYPAGDKANPIKVSAR 323 (360)
Q Consensus 245 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~-~~~i~~~Pti~~~~~g~~~~~~~~~g~ 323 (360)
....+.++|-|+.++|+ .....|.++|..+++ .+.|+.+.- .++. .+.+. -|++++|+.... .+..|.|.
T Consensus 14 ~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~--~~~F~~~~~--~~~~~~~~~~-~~~i~l~~~~~~-~~~~y~g~ 84 (97)
T cd02981 14 LDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD--DYGFGHTSD--KEVAKKLKVK-PGSVVLFKPFEE-EPVEYDGE 84 (97)
T ss_pred hccCCeEEEEEECCCCc---HHHHHHHHHHHhccc--CCeEEEECh--HHHHHHcCCC-CCceEEeCCccc-CCccCCCC
Confidence 35677888888888877 456789999999987 688876662 2332 34443 499999977533 35789999
Q ss_pred CCHHHHHHHHHHh
Q 018164 324 SSSKNIAAFIKEQ 336 (360)
Q Consensus 324 ~~~~~l~~~i~~~ 336 (360)
.+.+.|.+||..+
T Consensus 85 ~~~~~l~~fi~~~ 97 (97)
T cd02981 85 FTEESLVEFIKDN 97 (97)
T ss_pred CCHHHHHHHHHhC
Confidence 9999999999753
No 207
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.68 E-value=0.00041 Score=65.61 Aligned_cols=104 Identities=7% Similarity=-0.011 Sum_probs=74.7
Q ss_pred CCceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeC--------------------
Q 018164 101 FPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDI-------------------- 158 (360)
Q Consensus 101 ~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~-------------------- 158 (360)
.|.+...+.+.-......+++++|.||++| +.|...++.+.+++++++. .+.|+.|..
T Consensus 38 lP~f~l~D~dG~~v~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~ 117 (521)
T PRK14018 38 LSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLD 117 (521)
T ss_pred CCCeEeecCCCceeeccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCC
Confidence 555544444443334456778999999999 9999999999999999873 466655432
Q ss_pred --------CCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164 159 --------ADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR 209 (360)
Q Consensus 159 --------~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~ 209 (360)
+.. ..+.+.|+|... |+.+++ +.++.....+.|..+.+.|..+|+.
T Consensus 118 y~~~pV~~D~~---~~lak~fgV~gi-PTt~II-DkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 118 YPKLPVLTDNG---GTLAQSLNISVY-PSWAII-GKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred Ccccceecccc---HHHHHHcCCCCc-CeEEEE-cCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 111 367889999988 998544 4433444556789999999999984
No 208
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.65 E-value=0.00025 Score=57.71 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=55.9
Q ss_pred CccEEEEEeCCCChhhHHHHHHHHHHHHH-hcCCCCEEEEEEeCCC-----------------------------C-CC-
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQIEKLAKH-FKGLDNLVIAKIDASA-----------------------------N-EH- 295 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~-~~~~~~~~~~~id~~~-----------------------------~-~~- 295 (360)
.+.++|.|||.||+.|..-.|.+.+++.+ +.-..--...-||.+. + ..
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~ 138 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK 138 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence 78999999999999999999999999653 3210000002223221 1 11
Q ss_pred CCCCCCCCcEE-EEEeCCCccCceEecCCCCHHHHHHHH
Q 018164 296 PKLQVEEYPTL-LFYPAGDKANPIKVSARSSSKNIAAFI 333 (360)
Q Consensus 296 ~~~~i~~~Pti-~~~~~g~~~~~~~~~g~~~~~~l~~~i 333 (360)
..+++.++|+. +++.+.+++ ...+.|..+.+.+.+.+
T Consensus 139 ~~~gv~~~P~T~fVIDk~GkV-v~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 139 NAWQLNSEDSAIIVLDKTGKV-KFVKEGALSDSDIQTVI 176 (184)
T ss_pred HhcCCCCCCceEEEECCCCcE-EEEEeCCCCHHHHHHHH
Confidence 13478889887 677665555 45778998888776644
No 209
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.62 E-value=0.00043 Score=60.47 Aligned_cols=93 Identities=8% Similarity=-0.052 Sum_probs=65.8
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc------cchhHHhhcCCCCCCCceEEEEeCCCccc
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED------LAKPFLTLFGLEESKNTVVTAFDNKAISK 191 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~------~~~~l~~~~gi~~~~p~~~~~~~~~~~~~ 191 (360)
+.+.++.||++| +.|+...+.++++++++.-.+..+.+|....+ ....+.+.+||... |+++++..+++...
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~v-Ptl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTV-PAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcC-CeEEEEECCCCEEE
Confidence 456788999999 99999999999999999745555555553210 01367889999988 99964443232222
Q ss_pred ccCCCCCCHHHHHHHHHHHhc
Q 018164 192 FLLESDLTPSNIEEFCSRLLH 212 (360)
Q Consensus 192 y~~~~~~~~~~i~~fi~~~~~ 212 (360)
....|..+.+.|.+.+.....
T Consensus 245 ~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 245 PIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEeCCCCHHHHHHHHHHHhc
Confidence 223578899999999887653
No 210
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.61 E-value=0.00037 Score=49.41 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=54.8
Q ss_pred EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-----CC---CCCCCCCcEEEEEeCCCccCceEecC
Q 018164 251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----HP---KLQVEEYPTLLFYPAGDKANPIKVSA 322 (360)
Q Consensus 251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----~~---~~~i~~~Pti~~~~~g~~~~~~~~~g 322 (360)
-+++|+.+||++|......+++++..+. ++.+..+|++.+. +. ..+..++|+++ -+|+.+ |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i------g 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI------G 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE------c
Confidence 4678999999999999999999987653 5778888887652 22 12357899985 356432 2
Q ss_pred CCCHHHHHHHHHHhcC
Q 018164 323 RSSSKNIAAFIKEQLK 338 (360)
Q Consensus 323 ~~~~~~l~~~i~~~~~ 338 (360)
..++|.++++++++
T Consensus 71 --g~~~~~~~~~~~~~ 84 (85)
T PRK11200 71 --GCTDFEAYVKENLG 84 (85)
T ss_pred --CHHHHHHHHHHhcc
Confidence 45788888887765
No 211
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00031 Score=57.67 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=102.8
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCC
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES 196 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~ 196 (360)
.....++.|++.| ..|.++...+..+|+.+ .++.|+.++.+.++ .++..+.+... |....++......+. .+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~---eis~~~~v~~v-p~~~~~~~~~~v~~l--~~ 88 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFP---EISNLIAVEAV-PYFVFFFLGEKVDRL--SG 88 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhh---HHHHHHHHhcC-ceeeeeecchhhhhh--hc
Confidence 4455678899999 99999999999999999 56999999999887 89999999877 777544444333332 23
Q ss_pred CC---CHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcC--c-cccccc--cccCccEEEEE----eCCCChhhH
Q 018164 197 DL---TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVG--K-TFDDLV--LNSHKDVLLEV----YTPWCVTCE 264 (360)
Q Consensus 197 ~~---~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~--~-~~~~~~--~~~~~~~~v~f----~~~~c~~c~ 264 (360)
.. ....+..+..... ......+.+ .++.... + ..+..+ .-+.++++++. -.|.||..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~ 158 (227)
T KOG0911|consen 89 ADPPFLVSKVEKLAESGS-----ASLGMGLST-----TIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSR 158 (227)
T ss_pred cCcHHHHHHHHHhhhhcc-----cccCCCCCc-----chhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccH
Confidence 22 2223333333321 000000001 1111000 0 122222 12455666655 467899999
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----CC-CCCCCcEEEEEeCCCc
Q 018164 265 TTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KL-QVEEYPTLLFYPAGDK 314 (360)
Q Consensus 265 ~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----~~-~i~~~Pti~~~~~g~~ 314 (360)
++..+++.. ++.+...|+..+ ++. .| ...++|.+ |-+|.-
T Consensus 159 ~~v~iL~~~--------nV~~~~fdIL~DeelRqglK~fSdWPTfPQl--yI~GEF 204 (227)
T KOG0911|consen 159 QLVGILQSH--------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQL--YVKGEF 204 (227)
T ss_pred HHHHHHHHc--------CCCeeEEeccCCHHHHHHhhhhcCCCCccce--eECCEe
Confidence 988777766 577999999988 553 22 44556665 556643
No 212
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.56 E-value=0.00017 Score=57.40 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=35.8
Q ss_pred CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~ 290 (360)
.++++|.||++||+ |....|.+.++.+++++. ++.+..+.+
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~ 62 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPC 62 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEecc
Confidence 68999999999999 999999999999999753 677777764
No 213
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.56 E-value=0.00034 Score=52.63 Aligned_cols=91 Identities=9% Similarity=0.051 Sum_probs=65.5
Q ss_pred cccCccEEEEEeCC----CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC---C-CCCCCCCcEEEEEe--CCCc
Q 018164 245 LNSHKDVLLEVYTP----WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH---P-KLQVEEYPTLLFYP--AGDK 314 (360)
Q Consensus 245 ~~~~~~~~v~f~~~----~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---~-~~~i~~~Pti~~~~--~g~~ 314 (360)
..+.|.++|++|++ ||..|+.... =.++.+.++. ++.+...|++..+- . .+++.+||++.++. +++.
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~ 90 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM 90 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence 35678999999999 8888866431 1345555655 78899999987742 2 56999999999882 2222
Q ss_pred cCceEecCCCCHHHHHHHHHHhcC
Q 018164 315 ANPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 315 ~~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
.-.-+..|.+++++|+..|.....
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHh
Confidence 112368899999999999887653
No 214
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.54 E-value=0.001 Score=54.10 Aligned_cols=91 Identities=11% Similarity=0.265 Sum_probs=68.1
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcc-------------------cchhHHhhcCCCCC
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADED-------------------LAKPFLTLFGLEES 176 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~-------------------~~~~l~~~~gi~~~ 176 (360)
.+.++++.|+++| +.|....+.+.++++++.+. +.++.++++... ....+++.||+...
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 3567889999999 99999999999999999864 888888765321 12367889999887
Q ss_pred CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164 177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 210 (360)
Q Consensus 177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~ 210 (360)
|..++ .+.++.....+.|..+.+.+.+++++.
T Consensus 140 -P~~~l-id~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 -PTTFL-IDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred -CeEEE-ECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 88754 444333344457889999999988764
No 215
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.54 E-value=0.00066 Score=48.08 Aligned_cols=97 Identities=11% Similarity=0.136 Sum_probs=68.2
Q ss_pred ccCCHHHHHHHhhhCCeEEEEEecCCCC--ccHHHHHHHH-hcCCCceEEEe-----ccHHHHHHcCCCCCCCCCEEEEE
Q 018164 2 RTNTVNEAEEFLKKYQTFVLGMFKKFEG--SDYEEFVKTA-AADNEIQFVET-----SNFEVAKVLYPDIKSTDHFLGIV 73 (360)
Q Consensus 2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~--~~~~~f~~~a-~~~~~~~F~~~-----~~~~~~~~~~~~~~~~~p~i~~~ 73 (360)
.|.+..+++++++.++.++|.|..+..+ +..+.|.++| ...+-=+...+ ....+|+++.+.+..+...+.+.
T Consensus 5 ~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk 84 (112)
T cd03067 5 DISDHKDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK 84 (112)
T ss_pred cccchHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence 4788899999999999899988876654 6788999999 55543333332 24569999998633232224455
Q ss_pred ecCCCCcc-ccCCCCChHHHHHHHhh
Q 018164 74 KSEPDRYT-GYEETFIMDKILQFLNY 98 (360)
Q Consensus 74 ~~~~~~~~-~y~g~~~~~~l~~fi~~ 98 (360)
+..|+.++ .|+-..+..+|..|+..
T Consensus 85 HYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 85 HYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cccCCCccccccchhhHHHHHHHhhC
Confidence 54455554 67878899999999875
No 216
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.53 E-value=0.00041 Score=46.60 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=46.5
Q ss_pred EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164 123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 181 (360)
Q Consensus 123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~ 181 (360)
+.+|+.+| +.|+.+.+.+.+++..+. ++.|..+|.+..+ .+.+.+|+.+. |+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~---~l~~~~~i~~v-Pti~ 57 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFP---DLADEYGVMSV-PAIV 57 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCH---hHHHHcCCccc-CEEE
Confidence 56788899 999999999999988764 5999999988775 78999999888 9873
No 217
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.52 E-value=0.00013 Score=51.50 Aligned_cols=55 Identities=16% Similarity=0.338 Sum_probs=39.5
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC------CC-CCCCCCCcEEEEEeCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE------HP-KLQVEEYPTLLFYPAG 312 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~------~~-~~~i~~~Pti~~~~~g 312 (360)
+++|+++||++|..+.+.+.+++ ... .+.+..+|.+.+. +. ..++.++|+++ -+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g 62 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--ING 62 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECC
Confidence 47899999999999999999886 322 4677777765442 21 23778999984 355
No 218
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.51 E-value=0.0016 Score=51.61 Aligned_cols=90 Identities=8% Similarity=0.073 Sum_probs=59.2
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCC---cc----cchhHH-hhc---CCCCCCCceEEEEeC
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIAD---ED----LAKPFL-TLF---GLEESKNTVVTAFDN 186 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~---~~----~~~~l~-~~~---gi~~~~p~~~~~~~~ 186 (360)
....++.||++| +.|++..|.+.+++++++-.+..+.+|... ++ ...... ..+ ++... |+.+ +.+.
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~i-PTt~-LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVT-PATF-LVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCC-CeEE-EEeC
Confidence 344589999999 999999999999999985444444455321 00 001222 344 67777 8885 5554
Q ss_pred CCcc-cccCCCCCCHHHHHHHHHHH
Q 018164 187 KAIS-KFLLESDLTPSNIEEFCSRL 210 (360)
Q Consensus 187 ~~~~-~y~~~~~~~~~~i~~fi~~~ 210 (360)
+++. .....|..+.+.+.+.+...
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHh
Confidence 4333 22457889999988888765
No 219
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=97.49 E-value=0.0016 Score=46.62 Aligned_cols=106 Identities=19% Similarity=0.309 Sum_probs=73.1
Q ss_pred CceeecCcccccccccCCC-ceEEEEEEec--cchHHHHHHHHHHHHhhcC--ceEEEEEeCCCcccchhHH----hhcC
Q 018164 102 PLVTKLTDINSASVHSSPI-KLQVYVFAKA--DDLKSLLEPLEDIARNFKG--KIMFTAVDIADEDLAKPFL----TLFG 172 (360)
Q Consensus 102 p~v~~l~~~~~~~~~~~~~-~~~v~f~~~~--~~~~~~~~~~~~la~~~~~--~i~f~~vd~~~~~~~~~l~----~~~g 172 (360)
|..+.++++++..+..... ...+..|+.. .+..++...++++|+++.. ++.|++||.+.++ -+. +-||
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FP---llv~yWektF~ 77 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFP---LLVPYWEKTFG 77 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCc---hhhHHHHhhcC
Confidence 3455666666555443322 3445566655 7788899999999999984 6999999999986 332 4678
Q ss_pred CCCCCCceEEEEeCCCcc--cccCCCC---CCHHHHHHHHHHHh
Q 018164 173 LEESKNTVVTAFDNKAIS--KFLLESD---LTPSNIEEFCSRLL 211 (360)
Q Consensus 173 i~~~~p~~~~~~~~~~~~--~y~~~~~---~~~~~i~~fi~~~~ 211 (360)
|.-..|++ .+.+..... -+.+.+. .+.+.|..||++++
T Consensus 78 IDl~~PqI-GVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 78 IDLFRPQI-GVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred cccCCCce-eeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 88665777 566655433 4444333 68999999999864
No 220
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.47 E-value=0.0069 Score=58.48 Aligned_cols=181 Identities=11% Similarity=0.011 Sum_probs=121.8
Q ss_pred HHHHHHHhh--hCCeEEEEEecCC--CCccHHHHHHHHhcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCcc
Q 018164 6 VNEAEEFLK--KYQTFVLGMFKKF--EGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYT 81 (360)
Q Consensus 6 ~~~~~~~~~--~~~~~vv~ff~~~--~~~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~ 81 (360)
.++|+.+++ ++++.++.|..+. +.+..+...++|++.+.+++-..... . ..|++.+.+.+....+
T Consensus 7 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~--------~---~~p~~~~~~~~~~~~i 75 (517)
T PRK15317 7 KTQLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD--------V---RKPSFSITRPGEDTGV 75 (517)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC--------C---CCCEEEEEcCCccceE
Confidence 466776666 3667776665421 12445555677788888888553321 1 2599999875545557
Q ss_pred ccCCCCChHHHHHHHhh---ccCCceeecCcccccccccCCCce-EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEE
Q 018164 82 GYEETFIMDKILQFLNY---NKFPLVTKLTDINSASVHSSPIKL-QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAV 156 (360)
Q Consensus 82 ~y~g~~~~~~l~~fi~~---~~~p~v~~l~~~~~~~~~~~~~~~-~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~v 156 (360)
.|.|--.=.++..||.. .+-| =..++++..+.+-.-..|. +.+|+.+. +.|......+.++|.... +|.+-.+
T Consensus 76 ~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~i 153 (517)
T PRK15317 76 RFAGIPMGHEFTSLVLALLQVGGH-PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMI 153 (517)
T ss_pred EEEecCccHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEE
Confidence 88765455678888763 2333 3356776666665545555 45566666 999999999999999766 5999999
Q ss_pred eCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164 157 DIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR 209 (360)
Q Consensus 157 d~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~ 209 (360)
|+..++ ++++.|++... |+++ .+.. ..+.|..+.+.+.+.+..
T Consensus 154 d~~~~~---~~~~~~~v~~V-P~~~--i~~~----~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 154 DGALFQ---DEVEARNIMAV-PTVF--LNGE----EFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EchhCH---hHHHhcCCccc-CEEE--ECCc----EEEecCCCHHHHHHHHhc
Confidence 999887 99999999977 8884 2322 223677777766666654
No 221
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.45 E-value=0.00065 Score=50.68 Aligned_cols=95 Identities=14% Similarity=0.163 Sum_probs=65.1
Q ss_pred EcCccccccccccCccEEEEEe----CCCChhhHHHHHHHHHHHHHhc-CCCCEEEEEEeCCCCC--CCCCCCC--C--C
Q 018164 235 VVGKTFDDLVLNSHKDVLLEVY----TPWCVTCETTSKQIEKLAKHFK-GLDNLVIAKIDASANE--HPKLQVE--E--Y 303 (360)
Q Consensus 235 l~~~~~~~~~~~~~~~~~v~f~----~~~c~~c~~~~~~~~~la~~~~-~~~~~~~~~id~~~~~--~~~~~i~--~--~ 303 (360)
++.+|..... ..+.++.|+ +..-..-..++..+.++|+.++ + ++.|+.+|.+... +..++++ . +
T Consensus 4 ~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g--ki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 4 RTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR--KLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred eccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC--eEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 4445555542 334444443 2233445678899999999999 6 7999999998762 3456776 4 9
Q ss_pred cEEEEEeCCCccCceEecCCC-CHHHHHHHHHHh
Q 018164 304 PTLLFYPAGDKANPIKVSARS-SSKNIAAFIKEQ 336 (360)
Q Consensus 304 Pti~~~~~g~~~~~~~~~g~~-~~~~l~~~i~~~ 336 (360)
|++.+...+.. .....+.. +.++|.+|+.+.
T Consensus 79 P~~~i~~~~~~--KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKGK--KYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCCC--ccCCCcccCCHHHHHHHHHHh
Confidence 99999875432 23356778 999999999874
No 222
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.45 E-value=0.0004 Score=52.06 Aligned_cols=65 Identities=26% Similarity=0.491 Sum_probs=44.3
Q ss_pred ccCccEEEEEeC-------CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--------CC---CCCCCCCCcEEE
Q 018164 246 NSHKDVLLEVYT-------PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------EH---PKLQVEEYPTLL 307 (360)
Q Consensus 246 ~~~~~~~v~f~~-------~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--------~~---~~~~i~~~Pti~ 307 (360)
.++++++|+|++ +||+.|....|.+++.-..... +..++.+.+..- .. +.++++++||++
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi 94 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLI 94 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEE
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEE
Confidence 345788888875 4999999999999998877655 677777776432 11 257999999999
Q ss_pred EEeCC
Q 018164 308 FYPAG 312 (360)
Q Consensus 308 ~~~~g 312 (360)
-+..+
T Consensus 95 ~~~~~ 99 (119)
T PF06110_consen 95 RWETG 99 (119)
T ss_dssp ECTSS
T ss_pred EECCC
Confidence 99766
No 223
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.41 E-value=0.00027 Score=53.45 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=47.7
Q ss_pred cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCC-CCCceEEEEe
Q 018164 115 VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE-SKNTVVTAFD 185 (360)
Q Consensus 115 ~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~-~~p~~~~~~~ 185 (360)
....+++++|.|+++| ++|+.+.+.+.+.+........|+.+|.+..+ ......+++.+ +.|+++ +++
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~--~~~~~~~~~~g~~vPt~~-f~~ 84 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE--EPKDEEFSPDGGYIPRIL-FLD 84 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC--CchhhhcccCCCccceEE-EEC
Confidence 3456778999999999 99999999999987765444556666655432 14456788875 337774 554
No 224
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.40 E-value=0.0022 Score=48.19 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=69.9
Q ss_pred cCCCceEEEEEEec-cchHHHHH-HH--HHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC-CCccc
Q 018164 117 SSPIKLQVYVFAKA-DDLKSLLE-PL--EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN-KAISK 191 (360)
Q Consensus 117 ~~~~~~~v~f~~~~-~~~~~~~~-~~--~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~-~~~~~ 191 (360)
..+++.+|+|+++| ..|+.+.. .| .++.+.++....+..+|....+ +..++..+++.++ |+++ +.+. ++...
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e-~~~~~~~~~~~~~-P~~~-~i~~~~g~~l 91 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE-GQRFLQSYKVDKY-PHIA-IIDPRTGEVL 91 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc-HHHHHHHhCccCC-CeEE-EEeCccCcEe
Confidence 44677888899999 79999876 44 4677777777888888887533 4688999999998 8885 4544 44445
Q ss_pred ccCCCCCCHHHHHHHHHHHhc
Q 018164 192 FLLESDLTPSNIEEFCSRLLH 212 (360)
Q Consensus 192 y~~~~~~~~~~i~~fi~~~~~ 212 (360)
..+.|..+.+.+..-++++..
T Consensus 92 ~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EEEcCCCCHHHHHHHHHHHHh
Confidence 566899999999888887653
No 225
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.40 E-value=0.0012 Score=52.94 Aligned_cols=106 Identities=20% Similarity=0.306 Sum_probs=82.5
Q ss_pred CCCceEEEcCccccccccccC-c-cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcE
Q 018164 228 TNANVQIVVGKTFDDLVLNSH-K-DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPT 305 (360)
Q Consensus 228 ~~~~v~~l~~~~~~~~~~~~~-~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pt 305 (360)
.-+.|..+++.+|..-|...+ + -|+|..|...-..|.-+...++.||.+|.. ++|+++-.+. -++.|.-...||
T Consensus 89 kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~---iKFVki~at~-cIpNYPe~nlPT 164 (240)
T KOG3170|consen 89 KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ---IKFVKIPATT-CIPNYPESNLPT 164 (240)
T ss_pred cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---ceEEeccccc-ccCCCcccCCCe
Confidence 357899999999988885443 3 467888999999999999999999999974 7888876433 667787788999
Q ss_pred EEEEeCCCcc----CceEecC-CCCHHHHHHHHHHhc
Q 018164 306 LLFYPAGDKA----NPIKVSA-RSSSKNIAAFIKEQL 337 (360)
Q Consensus 306 i~~~~~g~~~----~~~~~~g-~~~~~~l~~~i~~~~ 337 (360)
+++|..|... .+..+.| ..+.+++..++-+.-
T Consensus 165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 9999988654 2334445 467788888887654
No 226
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.39 E-value=0.0012 Score=45.65 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=53.4
Q ss_pred EEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCC-CCHH
Q 018164 124 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD-LTPS 201 (360)
Q Consensus 124 v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~-~~~~ 201 (360)
+.||++| +.|+.+.+.++++++++..++.|..+| +. +.+..+|+.+. |+++ + ++. .. +.|. .+.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~----~~a~~~~v~~v-Pti~-i-~G~--~~--~~G~~~~~~ 69 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--DM----NEILEAGVTAT-PGVA-V-DGE--LV--IMGKIPSKE 69 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CH----HHHHHcCCCcC-CEEE-E-CCE--EE--EEeccCCHH
Confidence 6789999 999999999999999999889998887 22 44677899988 9884 3 322 12 4554 4557
Q ss_pred HHHHHH
Q 018164 202 NIEEFC 207 (360)
Q Consensus 202 ~i~~fi 207 (360)
.|.+++
T Consensus 70 ~l~~~l 75 (76)
T TIGR00412 70 EIKEIL 75 (76)
T ss_pred HHHHHh
Confidence 777665
No 227
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.33 E-value=0.00018 Score=55.20 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=39.1
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C-CCC---CCCCCCcEEEEEeCC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-HPK---LQVEEYPTLLFYPAG 312 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~-~~~---~~i~~~Pti~~~~~g 312 (360)
..+..++.|..+||+.|....|.+.++++... ++.+-.+..+.+ + ... .+....|+++++..+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 34557888999999999999999999999753 344544444444 2 333 378889999999665
No 228
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.32 E-value=0.0016 Score=63.17 Aligned_cols=91 Identities=9% Similarity=0.124 Sum_probs=68.5
Q ss_pred CCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCcc-cchhHHhhcCCCCCCCceEEEEeCCCcc--
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADED-LAKPFLTLFGLEESKNTVVTAFDNKAIS-- 190 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~-~~~~l~~~~gi~~~~p~~~~~~~~~~~~-- 190 (360)
.+++++|.|+++| .+|+.+.+.. .++.+.+++ +.++.+|.++.+ -.+.+++.||+.+. |+++ +++.++..
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~-Pt~~-~~~~~G~~i~ 549 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGL-PTIL-FFDAQGQEIP 549 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCC-CEEE-EECCCCCCcc
Confidence 3578899999999 9999988764 567777864 889999987431 12478899999998 8885 55433222
Q ss_pred cccCCCCCCHHHHHHHHHHHh
Q 018164 191 KFLLESDLTPSNIEEFCSRLL 211 (360)
Q Consensus 191 ~y~~~~~~~~~~i~~fi~~~~ 211 (360)
..++.|..+.+++.+++++..
T Consensus 550 ~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 550 DARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred cccccCCCCHHHHHHHHHHhc
Confidence 355678899999999998753
No 229
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.30 E-value=0.017 Score=55.79 Aligned_cols=183 Identities=10% Similarity=0.015 Sum_probs=120.6
Q ss_pred HHHHHHHhh--hCCeEEEEEecCC--CCccHHHHHHHHhcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCcc
Q 018164 6 VNEAEEFLK--KYQTFVLGMFKKF--EGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYT 81 (360)
Q Consensus 6 ~~~~~~~~~--~~~~~vv~ff~~~--~~~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~ 81 (360)
.++|+.+++ .+++.++.|..+. +.+..+...++|++.+.+++-.-.. +.. ..|++.+.+.+....+
T Consensus 7 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~-------~~~---~~p~~~~~~~~~~~~i 76 (515)
T TIGR03140 7 LAQLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTA-------DTL---RKPSFTILRDGADTGI 76 (515)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecC-------CcC---CCCeEEEecCCcccce
Confidence 456666666 3667776665521 1234455557777888888844221 112 3599998865444557
Q ss_pred ccCCCCChHHHHHHHhh---ccCCceeecCcccccccccCCCce-EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEE
Q 018164 82 GYEETFIMDKILQFLNY---NKFPLVTKLTDINSASVHSSPIKL-QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAV 156 (360)
Q Consensus 82 ~y~g~~~~~~l~~fi~~---~~~p~v~~l~~~~~~~~~~~~~~~-~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~v 156 (360)
.|.|--.=.++..||.. .+.| -..++++..+.+-.-..+. +.+|+.+. +.|......+.+++.... +|..-.+
T Consensus 77 ~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~i 154 (515)
T TIGR03140 77 RFAGIPGGHEFTSLVLAILQVGGH-GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMI 154 (515)
T ss_pred EEEecCCcHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEE
Confidence 78765445677777653 3334 3567777766665545555 44566666 999999999999999987 5898899
Q ss_pred eCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164 157 DIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 210 (360)
Q Consensus 157 d~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~ 210 (360)
|+..++ ++.+.|++... |+++ + +.. .. +.|..+.+.+.+.+...
T Consensus 155 d~~~~~---~~~~~~~v~~V-P~~~-i-~~~--~~--~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 155 DGALFQ---DEVEALGIQGV-PAVF-L-NGE--EF--HNGRMDLAELLEKLEET 198 (515)
T ss_pred EchhCH---HHHHhcCCccc-CEEE-E-CCc--EE--EecCCCHHHHHHHHhhc
Confidence 999887 99999999977 8884 3 322 22 36777777766665543
No 230
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.24 E-value=0.00087 Score=52.38 Aligned_cols=82 Identities=16% Similarity=0.155 Sum_probs=55.1
Q ss_pred CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----------------------CCCCCCCC
Q 018164 248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----------------------PKLQVEEY 303 (360)
Q Consensus 248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----------------------~~~~i~~~ 303 (360)
+++++|.|| +.||+.|....+.+.++...+++. ++.++.|..+.. .+ ..+++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 678999999 689999999999999999888642 566666654322 11 11245555
Q ss_pred ---------cEEEEEeCCCccCceEecCCCCHHHHHH
Q 018164 304 ---------PTLLFYPAGDKANPIKVSARSSSKNIAA 331 (360)
Q Consensus 304 ---------Pti~~~~~g~~~~~~~~~g~~~~~~l~~ 331 (360)
|+.+++.++.++ ...+.|....+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v-~~~~~g~~~~~~~~~ 137 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKI-VKVWRKVKPKGHAEE 137 (140)
T ss_pred cccccCCcceeEEEECCCCEE-EEEEecCCccchHHH
Confidence 888888665554 345667665555544
No 231
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.18 E-value=0.0029 Score=47.05 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=50.6
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhc-CceEEEEEeCCCc--c------------------cchhHHhhcCCCCC
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADE--D------------------LAKPFLTLFGLEES 176 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~-~~i~f~~vd~~~~--~------------------~~~~l~~~~gi~~~ 176 (360)
+++.+++|+..| +.|+...+.+.++.+++. ..+.++.++.+.. + ....+.+.||+.+.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 567889999999 999999999999999996 3588999888763 0 00267778888777
Q ss_pred CCceEEEEeCC
Q 018164 177 KNTVVTAFDNK 187 (360)
Q Consensus 177 ~p~~~~~~~~~ 187 (360)
|.++ +.+.+
T Consensus 99 -P~~~-l~d~~ 107 (116)
T cd02966 99 -PTTF-LIDRD 107 (116)
T ss_pred -ceEE-EECCC
Confidence 7774 44443
No 232
>smart00594 UAS UAS domain.
Probab=97.14 E-value=0.0049 Score=46.96 Aligned_cols=89 Identities=15% Similarity=0.254 Sum_probs=64.1
Q ss_pred cCCCceEEEEEEec-cchHHHHHH-H--HHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcc--
Q 018164 117 SSPIKLQVYVFAKA-DDLKSLLEP-L--EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAIS-- 190 (360)
Q Consensus 117 ~~~~~~~v~f~~~~-~~~~~~~~~-~--~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~-- 190 (360)
..++..+|+|+.+| ..|..+... | .++.+.++.++.+..+|....+ +.+++..+++.++ |+++++...++..
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~~l~~~~~~~~~-P~~~~l~~~~g~~~~ 102 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQRVSQFYKLDSF-PYVAIVDPRTGQRVI 102 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HHHHHHhcCcCCC-CEEEEEecCCCceeE
Confidence 35567889999999 889987764 3 4566777767888888877554 5688999999998 9985444333211
Q ss_pred --cccCCCCCCHHHHHHHH
Q 018164 191 --KFLLESDLTPSNIEEFC 207 (360)
Q Consensus 191 --~y~~~~~~~~~~i~~fi 207 (360)
.....|..+.+.+..++
T Consensus 103 ~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 103 EWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEeccccCCCCHHHHHHhh
Confidence 22347889999888775
No 233
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.13 E-value=0.0033 Score=45.38 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=36.1
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhc--CceEEEEEeCCCc
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIADE 161 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~--~~i~f~~vd~~~~ 161 (360)
+++.++.|+++| ++|....+.+.++.++++ +++.|+.|..+..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~ 46 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED 46 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence 357889999999 899999999999999999 6799998888754
No 234
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.13 E-value=0.0024 Score=48.66 Aligned_cols=97 Identities=8% Similarity=0.001 Sum_probs=62.7
Q ss_pred cccccccccCCCceEEEEEEec-cchHHHHH-HH--HHHHHhhcCceEEEEEeCCCcccchhHHh--------hcCCCCC
Q 018164 109 DINSASVHSSPIKLQVYVFAKA-DDLKSLLE-PL--EDIARNFKGKIMFTAVDIADEDLAKPFLT--------LFGLEES 176 (360)
Q Consensus 109 ~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~-~~--~~la~~~~~~i~f~~vd~~~~~~~~~l~~--------~~gi~~~ 176 (360)
++.+......+++++|.|+++| ..|+.+.. .| .++++.+...+.++.+|.++.+ ++.+ .+|+.++
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~---~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERP---DVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCc---HHHHHHHHHHHHhcCCCCC
Confidence 3445555667888999999999 99999876 34 3677777767999999988654 4433 3577787
Q ss_pred CCceEEEEeCCCcccccC-----CCCCCHHHHHHHHHHH
Q 018164 177 KNTVVTAFDNKAISKFLL-----ESDLTPSNIEEFCSRL 210 (360)
Q Consensus 177 ~p~~~~~~~~~~~~~y~~-----~~~~~~~~i~~fi~~~ 210 (360)
|+++ +.+.++...+.. ....+...+..+++.+
T Consensus 82 -Pt~v-fl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 82 -PLNV-FLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred -CEEE-EECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 8884 555543333221 1123444555555543
No 235
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.12 E-value=0.0013 Score=52.63 Aligned_cols=101 Identities=20% Similarity=0.348 Sum_probs=75.4
Q ss_pred CceEEEc-CccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--CCCCCCCCcEE
Q 018164 230 ANVQIVV-GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVEEYPTL 306 (360)
Q Consensus 230 ~~v~~l~-~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~Pti 306 (360)
+....+. ..+|-+.+ ..+..|++.||-|.-..|+-|-..++.||+..-+ ..|++||+..-.. .+++|.-+|++
T Consensus 66 G~y~ev~~Ekdf~~~~-~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v 141 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEV-KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTV 141 (211)
T ss_pred ceEEEeccHHHHHHHh-hcCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeE
Confidence 4455665 46676665 4567789999999999999999999999999875 6899999977633 57899999999
Q ss_pred EEEeCCCccC-ceEec--C---CCCHHHHHHHHH
Q 018164 307 LFYPAGDKAN-PIKVS--A---RSSSKNIAAFIK 334 (360)
Q Consensus 307 ~~~~~g~~~~-~~~~~--g---~~~~~~l~~~i~ 334 (360)
.+|.+|.... .+-|. | ..+.+.|..-|.
T Consensus 142 ~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~ 175 (211)
T KOG1672|consen 142 ALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLA 175 (211)
T ss_pred EEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHh
Confidence 9999997753 22232 2 344555555544
No 236
>PHA02125 thioredoxin-like protein
Probab=97.10 E-value=0.0014 Score=45.21 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=41.1
Q ss_pred EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164 123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 181 (360)
Q Consensus 123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~ 181 (360)
+++|+++| ++|+.+.+.|.+++ +.++.+|++... .+++.|+|.+. |+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~---~l~~~~~v~~~-PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGV---ELTAKHHIRSL-PTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCH---HHHHHcCCcee-CeEE
Confidence 57899999 99999999987663 457888887764 89999999999 9984
No 237
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.10 E-value=0.0047 Score=50.29 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=58.8
Q ss_pred CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-----------------CC-------------C
Q 018164 248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----------------EH-------------P 296 (360)
Q Consensus 248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------~~-------------~ 296 (360)
.+.++|.|| +.||..|....+.+.++++.+.+. ++.+..|.++.. .+ .
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 578999999 899999999999999999999653 455655554331 01 0
Q ss_pred CCCCC------CCcEEEEEeCCCccCceEec----CCCCHHHHHHHHHHh
Q 018164 297 KLQVE------EYPTLLFYPAGDKANPIKVS----ARSSSKNIAAFIKEQ 336 (360)
Q Consensus 297 ~~~i~------~~Pti~~~~~g~~~~~~~~~----g~~~~~~l~~~i~~~ 336 (360)
.+++. ..|+.+++.....+. ..+. ..++.+++.+.|+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~-~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIR-HITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEE-EEEecCCCCCCCHHHHHHHHHHh
Confidence 12443 467898886555542 2332 235678888888765
No 238
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.08 E-value=0.0038 Score=50.80 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=62.1
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc--------------------cchhHHhhcCCCCC
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED--------------------LAKPFLTLFGLEES 176 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~--------------------~~~~l~~~~gi~~~ 176 (360)
.+++.++.||++| +.|++..+.+.+++++ .+.++.|+.+... ....+.+.|++.+.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 4567889999999 9999999999888764 2555555532110 01244566777776
Q ss_pred CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164 177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH 212 (360)
Q Consensus 177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~ 212 (360)
|+.+ +.+.++...+.+.|..+.+.+.+++++++.
T Consensus 139 -P~~~-~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 139 -PETF-LVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred -CeEE-EEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 7664 444444456666788999999999999873
No 239
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.05 E-value=0.0025 Score=55.23 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=66.4
Q ss_pred CCceeecCc-ccccccccCC---CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCC
Q 018164 101 FPLVTKLTD-INSASVHSSP---IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE 175 (360)
Q Consensus 101 ~p~v~~l~~-~~~~~~~~~~---~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~ 175 (360)
+.-|.+++. +.|...+... ..++|.||.+. ..|..+...|..||.+|.. +.|+.|.+... .++..|.+..
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~----~~~~~f~~~~ 198 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKC----PASENFPDKN 198 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGC----CTTTTS-TTC
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhcc----CcccCCcccC
Confidence 456677754 5565554332 23567788887 8999999999999999997 99999988754 3567788877
Q ss_pred CCCceEEEEeCCCcccc-c---C-CCCCCHHHHHHHHHHH
Q 018164 176 SKNTVVTAFDNKAISKF-L---L-ESDLTPSNIEEFCSRL 210 (360)
Q Consensus 176 ~~p~~~~~~~~~~~~~y-~---~-~~~~~~~~i~~fi~~~ 210 (360)
. |++++|.++.-...+ . + ..+++...|..|+.++
T Consensus 199 L-PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 199 L-PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp --SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred C-CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 7 999777754322211 1 1 2358899999999875
No 240
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00088 Score=54.55 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=55.1
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCCC-----CCceEEEEeCCC
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEES-----KNTVVTAFDNKA 188 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~~-----~p~~~~~~~~~~ 188 (360)
...|++-||+.| +.|....+.|.+++.+|.. .++|+.||..-++ +....|+|+.. .||++++..+..
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfp---d~a~kfris~s~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFP---DVAAKFRISLSPGSRQLPTYILFQKGKE 217 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCc---ChHHheeeccCcccccCCeEEEEccchh
Confidence 356899999999 9999999999999999995 4999999999887 88999998822 377755544443
No 241
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.02 E-value=0.0015 Score=51.72 Aligned_cols=68 Identities=19% Similarity=0.438 Sum_probs=44.6
Q ss_pred cccCccEEEEEeCCCChhhHHHHH-HH--HHHHHHhcCCCCEEEEEEeCCCC-CCCC-C--------CCCCCcEEEEEeC
Q 018164 245 LNSHKDVLLEVYTPWCVTCETTSK-QI--EKLAKHFKGLDNLVIAKIDASAN-EHPK-L--------QVEEYPTLLFYPA 311 (360)
Q Consensus 245 ~~~~~~~~v~f~~~~c~~c~~~~~-~~--~~la~~~~~~~~~~~~~id~~~~-~~~~-~--------~i~~~Pti~~~~~ 311 (360)
...+|+++|.++++||+.|+.|.. .| .++|..++. ++.-+++|.+.. ++.. + +..++|+.++...
T Consensus 34 k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltP 111 (163)
T PF03190_consen 34 KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTP 111 (163)
T ss_dssp HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-T
T ss_pred HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECC
Confidence 466899999999999999999875 34 468888876 788899998887 6642 2 5679999998855
Q ss_pred CCc
Q 018164 312 GDK 314 (360)
Q Consensus 312 g~~ 314 (360)
..+
T Consensus 112 dg~ 114 (163)
T PF03190_consen 112 DGK 114 (163)
T ss_dssp TS-
T ss_pred CCC
Confidence 433
No 242
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.01 E-value=0.0025 Score=48.56 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=38.7
Q ss_pred cCccEEEEEeCC-CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164 247 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 293 (360)
Q Consensus 247 ~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~ 293 (360)
.+++++|.||+. ||+.|....+.+.++...++.. ++.+..+..+..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~ 70 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDP 70 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccc
Confidence 468999999999 9999999999999999998753 678877776543
No 243
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.01 E-value=0.0039 Score=47.81 Aligned_cols=81 Identities=16% Similarity=0.125 Sum_probs=53.4
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc--------------------ccchhHHhhcCCCCCC
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE--------------------DLAKPFLTLFGLEESK 177 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~gi~~~~ 177 (360)
+++.+|.||++| +.|.+..+.+.++++++. +.++.|+.+.. +.+..+++.||+...
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~- 101 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV- 101 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC-
Confidence 567889999999 999999999999998873 66665553110 001256777888877
Q ss_pred CceEEEEeCCCcccccCCCCCCHHHH
Q 018164 178 NTVVTAFDNKAISKFLLESDLTPSNI 203 (360)
Q Consensus 178 p~~~~~~~~~~~~~y~~~~~~~~~~i 203 (360)
|+.+ +.+.++...+.+.|.++.+.|
T Consensus 102 P~~~-~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETF-LIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEE-EECCCceEEEEEeccCChHhc
Confidence 7664 444333344555676665543
No 244
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.0059 Score=44.87 Aligned_cols=62 Identities=18% Similarity=0.353 Sum_probs=47.5
Q ss_pred ccEEEEEeC--------CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--------C-CCCC-CCCcEEEEEe
Q 018164 249 KDVLLEVYT--------PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--------P-KLQV-EEYPTLLFYP 310 (360)
Q Consensus 249 ~~~~v~f~~--------~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--------~-~~~i-~~~Pti~~~~ 310 (360)
+-++|+|++ +||+.|....|.+.+.-+.... ++.|+.+++..-.. . ..++ +++||++-|.
T Consensus 26 ~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 26 KTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK 103 (128)
T ss_pred ceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence 347777774 5999999999999998886665 79999999876522 1 2244 8999999997
Q ss_pred CC
Q 018164 311 AG 312 (360)
Q Consensus 311 ~g 312 (360)
++
T Consensus 104 ~~ 105 (128)
T KOG3425|consen 104 RQ 105 (128)
T ss_pred Cc
Confidence 53
No 245
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.98 E-value=0.0017 Score=50.82 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=38.1
Q ss_pred cCccEEEEEeCCCChh-hHHHHHHHHHHHHHhcCCC--CEEEEEEeCCC
Q 018164 247 SHKDVLLEVYTPWCVT-CETTSKQIEKLAKHFKGLD--NLVIAKIDASA 292 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~-c~~~~~~~~~la~~~~~~~--~~~~~~id~~~ 292 (360)
..+.++|.||++||+. |....+.+.++...++... ++.+..|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4678999999999997 9999999999999997642 47777776654
No 246
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.95 E-value=0.0022 Score=43.54 Aligned_cols=65 Identities=15% Similarity=0.360 Sum_probs=42.6
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCC----CCCCCcEEEEEeCCCccCceEecCCCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKL----QVEEYPTLLFYPAGDKANPIKVSARSS 325 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~----~i~~~Pti~~~~~g~~~~~~~~~g~~~ 325 (360)
+++|+++||++|..+...+.+. ++.+..+|++.+ .. ..+ +..++|++++ +| . ...| .+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~-~----~i~g-~~ 65 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD-E----HLSG-FR 65 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC-E----EEec-CC
Confidence 5789999999999988777663 456667777655 22 122 5688999975 33 1 3334 45
Q ss_pred HHHHHHH
Q 018164 326 SKNIAAF 332 (360)
Q Consensus 326 ~~~l~~~ 332 (360)
.+.|.++
T Consensus 66 ~~~l~~~ 72 (73)
T cd02976 66 PDKLRAL 72 (73)
T ss_pred HHHHHhh
Confidence 5566554
No 247
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=96.94 E-value=0.0065 Score=46.17 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=56.4
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCC-c-----------------ccchhHHhhcCCCCCCC
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIAD-E-----------------DLAKPFLTLFGLEESKN 178 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~-~-----------------~~~~~l~~~~gi~~~~p 178 (360)
.+++.++.|+++| +.|....+.+..+++++. +..+.+|... . ..+..+++.|++.+. |
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-P 95 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVT-P 95 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcc-c
Confidence 4567889999999 999999999999888753 2222222210 0 001368899999988 8
Q ss_pred ceEEEEeCCCcccccCCCCCCHHHHHH
Q 018164 179 TVVTAFDNKAISKFLLESDLTPSNIEE 205 (360)
Q Consensus 179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~ 205 (360)
+++ +.+.++ ..+.+.|..+.+.|.+
T Consensus 96 ~~~-vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 96 AIV-IVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred EEE-EEcCCC-eEEEEeccCCHHHHHh
Confidence 885 444444 6666678888877754
No 248
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.91 E-value=0.0071 Score=43.12 Aligned_cols=54 Identities=11% Similarity=-0.012 Sum_probs=46.5
Q ss_pred EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164 123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 181 (360)
Q Consensus 123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~ 181 (360)
+.+|+.+| +.|....+.+.+++..+. ++.+..+|.+..+ .+++.|||.+. |+++
T Consensus 16 i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~---e~a~~~~V~~v-Pt~v 70 (89)
T cd03026 16 FETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQ---DEVEERGIMSV-PAIF 70 (89)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCH---HHHHHcCCccC-CEEE
Confidence 45666677 999999999999998886 4999999998775 89999999998 9984
No 249
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.90 E-value=0.002 Score=50.30 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=48.7
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCC-CEEEEEEeCCCC--CC-------------------------CCC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN--EH-------------------------PKL 298 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~-~~~~~~id~~~~--~~-------------------------~~~ 298 (360)
.++.+.++|-|.||++|+.+.|.+.++-+.++... .+-++.++-+.+ +. ..|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 46899999999999999999999999988886632 244444443332 22 134
Q ss_pred CCCCCcEEEEEeCCCc
Q 018164 299 QVEEYPTLLFYPAGDK 314 (360)
Q Consensus 299 ~i~~~Pti~~~~~g~~ 314 (360)
.+.+.|++++......
T Consensus 112 ~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGT 127 (157)
T ss_pred ccCcCceeEEecCCCC
Confidence 6889999998865544
No 250
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.84 E-value=0.0032 Score=45.85 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=52.6
Q ss_pred ccCCHHHHHHHhhh--CCeEEEEEecCCCC---ccHHHHHHHHhcCCC-ceEEEec-------cHHHHHHcCCCCCCCCC
Q 018164 2 RTNTVNEAEEFLKK--YQTFVLGMFKKFEG---SDYEEFVKTAAADNE-IQFVETS-------NFEVAKVLYPDIKSTDH 68 (360)
Q Consensus 2 ~i~s~~~~~~~~~~--~~~~vv~ff~~~~~---~~~~~f~~~a~~~~~-~~F~~~~-------~~~~~~~~~~~~~~~~p 68 (360)
+|+|.++++++++. +.+++|.=-+..|+ ...+.|++.+...++ +.++... +..+|+++||.. ..|
T Consensus 3 ~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H--eSP 80 (105)
T PF11009_consen 3 PLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH--ESP 80 (105)
T ss_dssp E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT------SS
T ss_pred ccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc--CCC
Confidence 58899999999998 67777644444464 567788887744443 7777732 456899999974 469
Q ss_pred EEEEEecCCCCccccCCCCChHHH
Q 018164 69 FLGIVKSEPDRYTGYEETFIMDKI 92 (360)
Q Consensus 69 ~i~~~~~~~~~~~~y~g~~~~~~l 92 (360)
.+.+++.+.-....=++.++.+.|
T Consensus 81 Q~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 81 QVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEEETTEEEEEEEGGG-SHHHH
T ss_pred cEEEEECCEEEEECccccCCHHhc
Confidence 999999754222222356666665
No 251
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=96.77 E-value=0.0034 Score=49.54 Aligned_cols=45 Identities=13% Similarity=0.249 Sum_probs=35.3
Q ss_pred CccEEEEE-eCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164 248 HKDVLLEV-YTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 293 (360)
Q Consensus 248 ~~~~~v~f-~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~ 293 (360)
++.++|.| ++.||+.|....+.+.++...+... ++.++.|..+..
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~~ 68 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL-GVELVAVGPESP 68 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCCH
Confidence 35555555 5999999999999999999999642 688888876654
No 252
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.72 E-value=0.002 Score=42.09 Aligned_cols=49 Identities=16% Similarity=0.413 Sum_probs=38.0
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----CC-CCCCCcEEEE
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KL-QVEEYPTLLF 308 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----~~-~i~~~Pti~~ 308 (360)
+++|..+||++|......|++. ++.+..+|++.+ +.. +. +..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 4789999999999988877554 577888888887 332 22 8899999976
No 253
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.001 Score=54.69 Aligned_cols=76 Identities=25% Similarity=0.449 Sum_probs=63.0
Q ss_pred ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCccCceEecCC
Q 018164 246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSAR 323 (360)
Q Consensus 246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~~~~~~~g~ 323 (360)
...+..++.||++||..|+++...+..+++.+. ++.+++.+.+.. ++. .+.+...|.+.++..|.++. +..|.
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~--~l~~~ 89 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD--RLSGA 89 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh--hhhcc
Confidence 367789999999999999999999999999993 789999999887 665 56899999999998887764 44554
Q ss_pred CCH
Q 018164 324 SSS 326 (360)
Q Consensus 324 ~~~ 326 (360)
...
T Consensus 90 ~~~ 92 (227)
T KOG0911|consen 90 DPP 92 (227)
T ss_pred CcH
Confidence 443
No 254
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.71 E-value=0.0033 Score=51.43 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=36.7
Q ss_pred CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 292 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 292 (360)
.++++|.|+|+||+.|.. .+.++++.+++++. ++.+..+.|..
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~nq 67 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCNQ 67 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeeccc
Confidence 689999999999999975 78999999999753 68888888753
No 255
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.65 E-value=0.0038 Score=49.30 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=33.8
Q ss_pred ccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164 249 KDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291 (360)
Q Consensus 249 ~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~ 291 (360)
+.++|.|| ++||+.|....+.+.++++.+++. ++.+..+..+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d 71 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA-GAEVLGISVD 71 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-CCEEEEecCC
Confidence 67777777 999999999999999999999642 5667666543
No 256
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=96.63 E-value=0.012 Score=42.28 Aligned_cols=89 Identities=19% Similarity=0.276 Sum_probs=59.3
Q ss_pred CceEEEEEEec--cchHHHHHHHHHHHHhhcC----------ceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCC
Q 018164 120 IKLQVYVFAKA--DDLKSLLEPLEDIARNFKG----------KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK 187 (360)
Q Consensus 120 ~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~----------~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~ 187 (360)
.|.+++|.... +..+...+.++.+|+++.. .+.|+..|.+-. ..+-+..|+....|.+ ++.+-.
T Consensus 15 ~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~t---dsLRDf~nL~d~~P~L-viLDip 90 (116)
T cd03071 15 GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMT---DSLRDYTNLPEAAPLL-TILDMS 90 (116)
T ss_pred CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHH---HHHHHhcCCCccCceE-EEEecc
Confidence 35566666544 3577788888888877641 144444554433 2445566787664666 677777
Q ss_pred CcccccCC-CCCCHHHHHHHHHHHhc
Q 018164 188 AISKFLLE-SDLTPSNIEEFCSRLLH 212 (360)
Q Consensus 188 ~~~~y~~~-~~~~~~~i~~fi~~~~~ 212 (360)
...+|.+. ..+|.+++.+|+.+|++
T Consensus 91 ~r~~~v~~~eeIT~e~~~~fv~~ylA 116 (116)
T cd03071 91 ARAKYVMDVEEITPAIVEAFVSDFLA 116 (116)
T ss_pred ccceEeCchHhcCHHHHHHHHHHhhC
Confidence 77888873 46999999999999863
No 257
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.62 E-value=0.0056 Score=43.38 Aligned_cols=75 Identities=21% Similarity=0.319 Sum_probs=50.2
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-----CCC-CC--CCCCcEEEEEeCCCccCceEecCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----HPK-LQ--VEEYPTLLFYPAGDKANPIKVSAR 323 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----~~~-~~--i~~~Pti~~~~~g~~~~~~~~~g~ 323 (360)
+++|..+||++|.++...++++..... .+.+..+|+..+. +.. .+ ..++|++++ +|.. -|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~------ig- 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH------VG- 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE------ec-
Confidence 678999999999999988888764432 4667777876532 211 13 378999943 5532 12
Q ss_pred CCHHHHHHHHHHhcCC
Q 018164 324 SSSKNIAAFIKEQLKE 339 (360)
Q Consensus 324 ~~~~~l~~~i~~~~~~ 339 (360)
..++|.+++.++.+.
T Consensus 70 -G~~dl~~~~~~~~~~ 84 (86)
T TIGR02183 70 -GCTDFEQLVKENFDI 84 (86)
T ss_pred -CHHHHHHHHHhcccc
Confidence 347888888876553
No 258
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=96.60 E-value=0.019 Score=47.28 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCccc--------------------chhHHhhcCCCCC
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL--------------------AKPFLTLFGLEES 176 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~--------------------~~~l~~~~gi~~~ 176 (360)
.+++.++.|+++| +.|.+..+.+.+++++ .+.++.|+.++... ...+...||+.+.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 4667889999999 9999999999988753 35666665432110 0123346777777
Q ss_pred CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164 177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG 213 (360)
Q Consensus 177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g 213 (360)
|+.+ +++.++...+.+.|..+.+.+.++++..+..
T Consensus 144 -P~t~-vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 144 -PETF-LIDGNGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred -CeEE-EECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 8764 4544444556668899999999999988753
No 259
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.59 E-value=0.0079 Score=45.01 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=44.4
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~ 180 (360)
+++.++.||++| +.|.+..+.++++++++.+++.++.+-....+....+++.+++..+ |.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~-p~~ 82 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAF-PYV 82 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCC-cEE
Confidence 567889999999 9999999999999999877666665521222112467788888665 544
No 260
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.53 E-value=0.013 Score=45.21 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=46.8
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcc---------------------cchhHHhhcC
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADED---------------------LAKPFLTLFG 172 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~---------------------~~~~l~~~~g 172 (360)
.+++++|.|+++| ..|+...+.+.++++++.+ .+.++.++.+... ....+++.||
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3567889999999 9999999999999988864 3555555544221 0125677899
Q ss_pred CCCCCCceEEE
Q 018164 173 LEESKNTVVTA 183 (360)
Q Consensus 173 i~~~~p~~~~~ 183 (360)
+... |+.+++
T Consensus 97 v~~~-P~~~li 106 (131)
T cd03009 97 IEGI-PTLIIL 106 (131)
T ss_pred CCCC-CEEEEE
Confidence 9888 888544
No 261
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.48 E-value=0.0042 Score=43.24 Aligned_cols=55 Identities=11% Similarity=0.281 Sum_probs=38.9
Q ss_pred CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCCC----CCCCCCcEEEEEeCC
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPK----LQVEEYPTLLFYPAG 312 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~~----~~i~~~Pti~~~~~g 312 (360)
.+..+++|..+||++|...+..|++. ++.+-.+|++.+ .... .+..++|.+++ +|
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g 65 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GG 65 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CC
Confidence 44557789999999999998888643 456666787765 2211 26788999953 55
No 262
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.48 E-value=0.019 Score=40.10 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=50.1
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-C----CCCCCCCCcEEEEEeCCCccCceEecCCCCH
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-H----PKLQVEEYPTLLFYPAGDKANPIKVSARSSS 326 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-~----~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~ 326 (360)
+.+|..+||++|...+..|.+. ++.|-.+|++.+. . ...+...+|++++ +| . .. +..+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-~----~~-~Gf~~ 66 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-L----SW-SGFRP 66 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-E----EE-ecCCH
Confidence 6688999999999988777553 5778888888762 2 1236678999965 33 2 12 35678
Q ss_pred HHHHHHHHHhcC
Q 018164 327 KNIAAFIKEQLK 338 (360)
Q Consensus 327 ~~l~~~i~~~~~ 338 (360)
+.|.+.+..+..
T Consensus 67 ~~l~~~~~~~~~ 78 (81)
T PRK10329 67 DMINRLHPAPHA 78 (81)
T ss_pred HHHHHHHHhhhh
Confidence 888888876654
No 263
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.42 E-value=0.005 Score=43.04 Aligned_cols=53 Identities=11% Similarity=0.361 Sum_probs=36.5
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--C----CC-CCCCCCcEEEEEeCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--H----PK-LQVEEYPTLLFYPAG 312 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~----~~-~~i~~~Pti~~~~~g 312 (360)
+++|+++||++|..+...+.++.. .+.+..++...+. + .. .+..++|++ |-+|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g 61 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGG 61 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECC
Confidence 578999999999999999888743 3456666655431 1 11 267788997 4455
No 264
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.36 E-value=0.035 Score=45.04 Aligned_cols=88 Identities=11% Similarity=0.093 Sum_probs=59.2
Q ss_pred EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCC---ccc-----chhHHhhcCC--CCCCCceEEEEeCCCccc
Q 018164 123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIAD---EDL-----AKPFLTLFGL--EESKNTVVTAFDNKAISK 191 (360)
Q Consensus 123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~---~~~-----~~~l~~~~gi--~~~~p~~~~~~~~~~~~~ 191 (360)
+|.||++| +.|++..+.++++++++.-.+.-+.+|... ++. ...+...||+ ... |+.+ +.+.++...
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~i-Pttf-LId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVAT-PTTF-LVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCC-CeEE-EEeCCCcEE
Confidence 67899999 999999999999999996333333444321 110 1235567885 355 8885 444443333
Q ss_pred c-cCCCCCCHHHHHHHHHHHhc
Q 018164 192 F-LLESDLTPSNIEEFCSRLLH 212 (360)
Q Consensus 192 y-~~~~~~~~~~i~~fi~~~~~ 212 (360)
+ .+.|..+.+.+.+-+...++
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHh
Confidence 3 35789999999888888764
No 265
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.34 E-value=0.0065 Score=40.92 Aligned_cols=48 Identities=15% Similarity=0.305 Sum_probs=35.1
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-CC-C----CCCCCCcEEE
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-HP-K----LQVEEYPTLL 307 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-~~-~----~~i~~~Pti~ 307 (360)
++.|+++||++|..++..+.+.. +.+..+|+..+. .. . .+..++|+++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 56789999999999998888763 566778887763 22 2 2556788774
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.28 E-value=0.022 Score=59.52 Aligned_cols=92 Identities=12% Similarity=0.134 Sum_probs=67.0
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC---C--c-------------------ccchhHHhhc
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA---D--E-------------------DLAKPFLTLF 171 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~---~--~-------------------~~~~~l~~~~ 171 (360)
.+++++|.||++| ..|....|.|++++++|+++ +.++.|.+. . . +....+.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 3567889999999 99999999999999999865 666666321 0 0 0012566788
Q ss_pred CCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164 172 GLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL 211 (360)
Q Consensus 172 gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~ 211 (360)
++... |+.+ +++.++.....+.|....+.+.++++..+
T Consensus 499 ~V~~i-Pt~i-lid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSW-PTFA-VVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCCcc-ceEE-EECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 99888 8885 55443334445678888899999998865
No 267
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.26 E-value=0.01 Score=46.50 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=34.5
Q ss_pred CccEEEEEeCCC-ChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164 248 HKDVLLEVYTPW-CVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291 (360)
Q Consensus 248 ~~~~~v~f~~~~-c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~ 291 (360)
+++++|.||+.| |.+|....+.+.++.+.+. ++.++.|..+
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d 67 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISAD 67 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECC
Confidence 678999999998 6999999999999999874 4667777664
No 268
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.26 E-value=0.024 Score=43.72 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=46.3
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcc----------------------cchhHHhhc
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADED----------------------LAKPFLTLF 171 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~----------------------~~~~l~~~~ 171 (360)
.++..++.|+++| +.|....+.++++++++++ .+.++.|+.+... ....+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3567889999999 9999999999999998875 3666666544321 011345668
Q ss_pred CCCCCCCceEEE
Q 018164 172 GLEESKNTVVTA 183 (360)
Q Consensus 172 gi~~~~p~~~~~ 183 (360)
|+.+. |+.+++
T Consensus 96 ~v~~i-Pt~~li 106 (132)
T cd02964 96 KVEGI-PTLVVL 106 (132)
T ss_pred CCCCC-CEEEEE
Confidence 88888 888544
No 269
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.24 E-value=0.034 Score=40.97 Aligned_cols=88 Identities=20% Similarity=0.234 Sum_probs=58.5
Q ss_pred cccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCC---
Q 018164 111 NSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK--- 187 (360)
Q Consensus 111 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~--- 187 (360)
..+.+.......+|.||....+ .....|.++|..++....|+..... .+...+++ . |+++++.+..
T Consensus 10 ~l~~f~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~--~-~~ivl~~p~~~~~ 78 (104)
T cd03069 10 EFEKFLSDDDASVVGFFEDEDS--KLLSEFLKAADTLRESFRFAHTSDK------QLLEKYGY--G-EGVVLFRPPRLSN 78 (104)
T ss_pred HHHHHhccCCcEEEEEEcCCCc--hHHHHHHHHHHhhhhcCEEEEEChH------HHHHhcCC--C-CceEEEechhhhc
Confidence 3455555555666667755422 3556889999999988999876443 56677887 3 7775553211
Q ss_pred --CcccccCCCCCCHHHHHHHHHH
Q 018164 188 --AISKFLLESDLTPSNIEEFCSR 209 (360)
Q Consensus 188 --~~~~y~~~~~~~~~~i~~fi~~ 209 (360)
......|.|..+.+.|.+||..
T Consensus 79 k~de~~~~y~g~~~~~~l~~fi~~ 102 (104)
T cd03069 79 KFEDSSVKFDGDLDSSKIKKFIRE 102 (104)
T ss_pred ccCcccccccCcCCHHHHHHHHHh
Confidence 1223446888899999999976
No 270
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.21 E-value=0.031 Score=47.04 Aligned_cols=82 Identities=7% Similarity=0.062 Sum_probs=57.2
Q ss_pred eEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc------ccchhHHhhcCCCCCCCceEEEEeCCCcccccC
Q 018164 122 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE------DLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL 194 (360)
Q Consensus 122 ~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~------~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~ 194 (360)
-+++||.+. +.|+.+.+.++.++++|.=.|..+.+|+... .....+.+.+||..+ |+++++..++ ...++.
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~-Pal~Lv~~~~-~~~~pv 200 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVT-PALFLVNPNT-KKWYPV 200 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcC-CEEEEEECCC-CeEEEE
Confidence 356777777 9999999999999999976677777775310 001378889999887 9986554443 334433
Q ss_pred -CCCCCHHHHHH
Q 018164 195 -ESDLTPSNIEE 205 (360)
Q Consensus 195 -~~~~~~~~i~~ 205 (360)
.|-.+.+.|.+
T Consensus 201 ~~G~~s~~~L~~ 212 (215)
T PF13728_consen 201 SQGFMSLDELED 212 (215)
T ss_pred eeecCCHHHHHH
Confidence 57788877754
No 271
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.21 E-value=0.023 Score=45.17 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=34.1
Q ss_pred cCccEEEEEeCC-CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164 247 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291 (360)
Q Consensus 247 ~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~ 291 (360)
..++++|.||+. ||..|....+.+.++.+.+++. ++.+..|..+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d 73 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTD 73 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 467899999975 6888999999999999888653 5666666543
No 272
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.21 E-value=0.01 Score=46.21 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=35.8
Q ss_pred cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164 247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291 (360)
Q Consensus 247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~ 291 (360)
.+++++|.|| +.||..|....+.+.++..+++.. ++.++.+..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4788999999 789999999999999999998532 5667766654
No 273
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.20 E-value=0.015 Score=46.67 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=79.6
Q ss_pred HHHHHhhccCCceeecC-cccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHh
Q 018164 92 ILQFLNYNKFPLVTKLT-DINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLT 169 (360)
Q Consensus 92 l~~fi~~~~~p~v~~l~-~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~ 169 (360)
-..|+.. ...-+.++. +..|-........+++.||.+. .-|+-+...|..+|+.+-+ ..|+.||+...+ -++.
T Consensus 57 r~~~~~~-GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~P---Flv~ 131 (211)
T KOG1672|consen 57 RKEWLSK-GHGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAP---FLVT 131 (211)
T ss_pred HHHHHHc-CCceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCc---eeee
Confidence 3445443 445555555 4445555556667888999998 8999999999999999997 899999999887 7899
Q ss_pred hcCCCCCCCceEEEEeCCCccccc-C---C--CCCCHHHHHHHHHH
Q 018164 170 LFGLEESKNTVVTAFDNKAISKFL-L---E--SDLTPSNIEEFCSR 209 (360)
Q Consensus 170 ~~gi~~~~p~~~~~~~~~~~~~y~-~---~--~~~~~~~i~~fi~~ 209 (360)
.++|+-. |++.++.++....++. | . .+++.+.|..=+-.
T Consensus 132 kL~IkVL-P~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~ 176 (211)
T KOG1672|consen 132 KLNIKVL-PTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAK 176 (211)
T ss_pred eeeeeEe-eeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhh
Confidence 9999988 9986555443222221 2 1 24777777666544
No 274
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.18 E-value=0.0095 Score=49.12 Aligned_cols=86 Identities=10% Similarity=0.168 Sum_probs=56.3
Q ss_pred CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--------------CC-------------CCCC
Q 018164 248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------------EH-------------PKLQ 299 (360)
Q Consensus 248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--------------~~-------------~~~~ 299 (360)
.+.++|+|| +.||..|....+.+.++...|.+. ++.+..|.++.. .+ ..++
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 568999999 999999999999999999998643 444544443321 01 0224
Q ss_pred CC------CCcEEEEEeCCCccCceEec-C--CCCHHHHHHHHH
Q 018164 300 VE------EYPTLLFYPAGDKANPIKVS-A--RSSSKNIAAFIK 334 (360)
Q Consensus 300 i~------~~Pti~~~~~g~~~~~~~~~-g--~~~~~~l~~~i~ 334 (360)
+. ..|+.+++..++.+....+. . .++.+++.+.|.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 43 35889888655454222221 1 468888888775
No 275
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.12 E-value=0.011 Score=50.41 Aligned_cols=78 Identities=17% Similarity=0.331 Sum_probs=53.5
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEe-------------------------------------
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID------------------------------------- 289 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id------------------------------------- 289 (360)
+.+.+++.|..|.|++|+++.+.+.++.+. ++.+..+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL-----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC-----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 456789999999999999999888776431 12211110
Q ss_pred ---CCCCCC-------CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164 290 ---ASANEH-------PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336 (360)
Q Consensus 290 ---~~~~~~-------~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~ 336 (360)
|.. .+ .+++|++.|+++ +++|.. ..|..+.+.|.++|++.
T Consensus 181 ~~~c~~-~v~~~~~la~~lgi~gTPtiv-~~~G~~-----~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 181 PASCDV-DIADHYALGVQFGVQGTPAIV-LSNGTL-----VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccccc-hHHHhHHHHHHcCCccccEEE-EcCCeE-----eeCCCCHHHHHHHHHHc
Confidence 111 11 134789999999 666643 47999999999999864
No 276
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.10 E-value=0.036 Score=41.17 Aligned_cols=95 Identities=15% Similarity=0.268 Sum_probs=68.3
Q ss_pred ccccc-cccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCccC
Q 018164 240 FDDLV-LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKAN 316 (360)
Q Consensus 240 ~~~~~-~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~~ 316 (360)
.++.+ ....+.+++-|-..|.+.|.++-..+..+++.+++ -..++-+|++.- +.. -+.+...|++.+|=+++..
T Consensus 14 VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHm- 90 (142)
T KOG3414|consen 14 VDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHM- 90 (142)
T ss_pred HHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcCceE-
Confidence 34444 34577899999999999999999999999999987 567777787754 443 3589999999988665554
Q ss_pred ceEe--------cC-CCCHHHHHHHHHHhc
Q 018164 317 PIKV--------SA-RSSSKNIAAFIKEQL 337 (360)
Q Consensus 317 ~~~~--------~g-~~~~~~l~~~i~~~~ 337 (360)
-+.+ ++ -.+.+.+++.|.-.-
T Consensus 91 kiD~gtgdn~Kin~~~~~kq~~Idiie~iy 120 (142)
T KOG3414|consen 91 KIDLGTGDNNKINFAFEDKQEFIDIIETIY 120 (142)
T ss_pred EEeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence 1222 22 245677777776544
No 277
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.08 E-value=0.014 Score=47.09 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=33.4
Q ss_pred CccEEEEEeCCC-ChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164 248 HKDVLLEVYTPW-CVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291 (360)
Q Consensus 248 ~~~~~v~f~~~~-c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~ 291 (360)
.+.++|.||+.| |+.|....+.+.++++.+. ++.+..+.++
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D 85 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISAD 85 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCC
Confidence 678999999999 9999999999999998884 4555555543
No 278
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.03 E-value=0.078 Score=38.85 Aligned_cols=91 Identities=14% Similarity=0.125 Sum_probs=58.9
Q ss_pred Cccccccccc-CCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC
Q 018164 108 TDINSASVHS-SPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN 186 (360)
Q Consensus 108 ~~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~ 186 (360)
+.+..+.+.. .....+|.||....+ .....|.++|..++....|+..... .+...+++. . |+++++...
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~~-~-~~i~l~~~~ 76 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS--EHYKAFEEAAEEFHPYIKFFATFDS------KVAKKLGLK-M-NEVDFYEPF 76 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC--HHHHHHHHHHHhhhcCCEEEEECcH------HHHHHcCCC-C-CcEEEeCCC
Confidence 3444666666 555566666655422 3455799999999888999775432 556667764 3 677444332
Q ss_pred CCcccccC-CCCCCHHHHHHHHHH
Q 018164 187 KAISKFLL-ESDLTPSNIEEFCSR 209 (360)
Q Consensus 187 ~~~~~y~~-~~~~~~~~i~~fi~~ 209 (360)
. .....| .|..+.+.|.+||..
T Consensus 77 ~-e~~~~y~~g~~~~~~l~~fi~~ 99 (102)
T cd03066 77 M-EEPVTIPDKPYSEEELVDFVEE 99 (102)
T ss_pred C-CCCcccCCCCCCHHHHHHHHHH
Confidence 2 333446 678899999999976
No 279
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.00 E-value=0.011 Score=43.13 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=35.7
Q ss_pred cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----CC----CCCCCcEEEEEeCCCc
Q 018164 250 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KL----QVEEYPTLLFYPAGDK 314 (360)
Q Consensus 250 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----~~----~i~~~Pti~~~~~g~~ 314 (360)
.-++.|..+||++|..+...|.+. ++.+..+|++.. +.. .+ +..++|.+ |-+|..
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~--------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~ 71 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTL--------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKL 71 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc--------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEE
Confidence 346779999999999988877665 344455666554 211 11 56789998 445633
No 280
>PHA03050 glutaredoxin; Provisional
Probab=96.00 E-value=0.014 Score=43.23 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=34.6
Q ss_pred EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC----C----CC-CCCCCCcEEEE
Q 018164 251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE----H----PK-LQVEEYPTLLF 308 (360)
Q Consensus 251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----~----~~-~~i~~~Pti~~ 308 (360)
-+++|..+||++|......|.+..-... .+..+|++.++ + .+ -+..++|++++
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~-----~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRG-----AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcC-----CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 4778999999999999888877632111 35555666531 1 11 26678999943
No 281
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.97 E-value=0.011 Score=40.27 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=35.4
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-C-CCC----CCCCCcEEE
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-H-PKL----QVEEYPTLL 307 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-~-~~~----~i~~~Pti~ 307 (360)
++.|+.+||++|++.+..|++. ++.+..+|+..+. . ..+ +...+|+++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~ 56 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIF 56 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 5678999999999998888763 5677788888763 2 122 556789983
No 282
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.95 E-value=0.014 Score=39.60 Aligned_cols=64 Identities=11% Similarity=0.285 Sum_probs=43.1
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CC----CCCCCCcEEEEEeCCCccCceEecCCCCH
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PK----LQVEEYPTLLFYPAGDKANPIKVSARSSS 326 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~----~~i~~~Pti~~~~~g~~~~~~~~~g~~~~ 326 (360)
+++|..+||+.|.+.+..+++. ++.+..+|++.+.. .. .+..++|.+ |-+|.. . | ..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~-----i-g--g~ 64 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGEL-----I-G--GS 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEE-----E-e--CH
Confidence 6789999999999998777753 46677778777632 11 267789998 345533 1 2 35
Q ss_pred HHHHHHH
Q 018164 327 KNIAAFI 333 (360)
Q Consensus 327 ~~l~~~i 333 (360)
++|.+|+
T Consensus 65 ~~l~~~l 71 (72)
T cd03029 65 DDLEKYF 71 (72)
T ss_pred HHHHHHh
Confidence 6666665
No 283
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.94 E-value=0.013 Score=42.50 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=35.2
Q ss_pred CccEEEEEe----CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-C----CCCCCCcEEE
Q 018164 248 HKDVLLEVY----TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-K----LQVEEYPTLL 307 (360)
Q Consensus 248 ~~~~~v~f~----~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~----~~i~~~Pti~ 307 (360)
+.+++|+-. .|||++|......|.+. ++.+..+|+..+ ... . .+..++|.++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 455665544 38999999998888775 356677888765 322 1 1566889884
No 284
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.89 E-value=0.013 Score=40.98 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=53.6
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHH
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNI 329 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l 329 (360)
+++|..+.|.-|..+...+..++... .+.+-.+|++.+ .+ .+|+ ...|.+.+-..+.........+..+.+.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~-~~IPVl~~~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYG-YRIPVLHIDGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSC-TSTSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhc-CCCCEEEEcCcccccccceeCCCCCHHHH
Confidence 67899999999999988887754332 588999999987 43 4566 36898755321111112356689999999
Q ss_pred HHHHH
Q 018164 330 AAFIK 334 (360)
Q Consensus 330 ~~~i~ 334 (360)
.+||+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99985
No 285
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.88 E-value=0.0042 Score=51.39 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=78.2
Q ss_pred ceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164 103 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180 (360)
Q Consensus 103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~ 180 (360)
.+..++.+|...+... .++++|+++| +.|..+.++|...|.--.+ .+.++.||.+.++ .+..+|-+... |++
T Consensus 25 ~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np---gLsGRF~vtaL-ptI 98 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP---GLSGRFLVTAL-PTI 98 (248)
T ss_pred eeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc---ccceeeEEEec-ceE
Confidence 6788899998877644 4789999999 9999999999988775554 4889999988665 67677777777 888
Q ss_pred EEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164 181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLL 211 (360)
Q Consensus 181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~ 211 (360)
+-..++. -++| .|.++.+++..|+..-.
T Consensus 99 YHvkDGe-Frry--sgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 99 YHVKDGE-FRRY--SGARDKNDFISFEEHRE 126 (248)
T ss_pred EEeeccc-cccc--cCcccchhHHHHHHhhh
Confidence 6555543 3444 89999999999998743
No 286
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.86 E-value=0.0086 Score=41.56 Aligned_cols=48 Identities=10% Similarity=0.330 Sum_probs=34.0
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCC----CCCCCcEEE
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKL----QVEEYPTLL 307 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~----~i~~~Pti~ 307 (360)
+++|..+||++|...+..+++. ++.+-.+|++.+ .. ..+ +..++|+++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~ 54 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF 54 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE
Confidence 3578899999999999888764 355666677665 22 222 567899983
No 287
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.86 E-value=0.014 Score=39.69 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=35.9
Q ss_pred EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-C-C---CCCCCCCcEEEE
Q 018164 253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-H-P---KLQVEEYPTLLF 308 (360)
Q Consensus 253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-~-~---~~~i~~~Pti~~ 308 (360)
.+|..++|++|.+.+..|++. ++.+-.+|++.+. . . ..+..++|.+++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 578899999999998888753 5677778888762 2 1 236778999855
No 288
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.18 Score=43.95 Aligned_cols=119 Identities=15% Similarity=0.237 Sum_probs=81.7
Q ss_pred HHHHHHHhhccCCceeecCcccccccccCC-Cc-eEEEEEEec------cchHHHHHHHHHHHHhhc------C--ceEE
Q 018164 90 DKILQFLNYNKFPLVTKLTDINSASVHSSP-IK-LQVYVFAKA------DDLKSLLEPLEDIARNFK------G--KIMF 153 (360)
Q Consensus 90 ~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~-~~-~~v~f~~~~------~~~~~~~~~~~~la~~~~------~--~i~f 153 (360)
+.+.+...--+..-|..++++++.++...+ ++ .++.+|+.. .-|.+...+|+-+|..+. + ++-|
T Consensus 28 ~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF 107 (331)
T KOG2603|consen 28 NKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFF 107 (331)
T ss_pred HHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEE
Confidence 445555553456678899999999987643 33 234444432 237788889999998887 2 6899
Q ss_pred EEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccc--cCC---CCCCHHHHHHHHHHHhc
Q 018164 154 TAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKF--LLE---SDLTPSNIEEFCSRLLH 212 (360)
Q Consensus 154 ~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y--~~~---~~~~~~~i~~fi~~~~~ 212 (360)
+.||-++.+ +..+.++++.. |.++.+.+..++.+- .|+ -...+|++.+|+.+...
T Consensus 108 ~~Vd~~e~p---~~Fq~l~ln~~-P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 108 CMVDYDESP---QVFQQLNLNNV-PHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred EEEeccccH---HHHHHhcccCC-CeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 999999876 89999999998 998655444332221 121 12459999999999653
No 289
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.80 E-value=0.016 Score=41.40 Aligned_cols=56 Identities=20% Similarity=0.356 Sum_probs=37.2
Q ss_pred CccEEEEEeC----CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----C-CCCCCCcEEEEEeCCC
Q 018164 248 HKDVLLEVYT----PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----K-LQVEEYPTLLFYPAGD 313 (360)
Q Consensus 248 ~~~~~v~f~~----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----~-~~i~~~Pti~~~~~g~ 313 (360)
+.+++|+-.+ |||++|.+....|++. ++.+..+|+..+ ++. + -+..++|.+ |-+|.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL--------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence 4566665543 7999999988877776 356777777665 332 1 166789998 33553
No 290
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.76 E-value=0.086 Score=45.39 Aligned_cols=88 Identities=9% Similarity=0.054 Sum_probs=62.7
Q ss_pred EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc------cchhHHhhcCCCCCCCceEEEEeCCCcccccC-
Q 018164 123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED------LAKPFLTLFGLEESKNTVVTAFDNKAISKFLL- 194 (360)
Q Consensus 123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~------~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~- 194 (360)
+++||... +.|+++.+.++.++++|.=.+..+.+|+...+ ....+++.+|+..+ |+++++ +.+....++.
T Consensus 154 L~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~-Pal~Lv-~~~t~~~~pv~ 231 (256)
T TIGR02739 154 LFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF-PALYLV-NPKSQKMSPLA 231 (256)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccC-ceEEEE-ECCCCcEEEEe
Confidence 56677766 89999999999999999877777778766221 01247789999887 888644 4443444443
Q ss_pred CCCCCHHHHHHHHHHHhc
Q 018164 195 ESDLTPSNIEEFCSRLLH 212 (360)
Q Consensus 195 ~~~~~~~~i~~fi~~~~~ 212 (360)
.|-++.+.|.+=+.....
T Consensus 232 ~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 232 YGFISQDELKERILNVLT 249 (256)
T ss_pred eccCCHHHHHHHHHHHHh
Confidence 577888888776666554
No 291
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.75 E-value=0.016 Score=39.62 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=36.2
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CC----CCCC-CCcEEEEEeCCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PK----LQVE-EYPTLLFYPAGD 313 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~----~~i~-~~Pti~~~~~g~ 313 (360)
+++|..+||++|...+..|++. ++.+..+|++.+ +. .. .+.. ++|+++ -+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCE
Confidence 5678899999999988888763 467777888775 22 22 2444 899884 3553
No 292
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=95.74 E-value=0.19 Score=37.74 Aligned_cols=94 Identities=12% Similarity=0.130 Sum_probs=63.2
Q ss_pred cCCCceEEEEEEec-cchHHHHH-HH--HHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCc--c
Q 018164 117 SSPIKLQVYVFAKA-DDLKSLLE-PL--EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI--S 190 (360)
Q Consensus 117 ~~~~~~~v~f~~~~-~~~~~~~~-~~--~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~--~ 190 (360)
+.++..+|+++++. .++..+.. .| .++.+-+++++.+...|....+ +..++..+++..+ |.++++...+.. -
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~e-g~~la~~l~~~~~-P~~~~l~~~~~~~~v 92 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPE-GYRVSQALRERTY-PFLAMIMLKDNRMTI 92 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChH-HHHHHHHhCCCCC-CEEEEEEecCCceEE
Confidence 34566778888874 44443332 22 4566666677888888988654 5688999999999 998544322221 1
Q ss_pred cccCCCCCCHHHHHHHHHHHhc
Q 018164 191 KFLLESDLTPSNIEEFCSRLLH 212 (360)
Q Consensus 191 ~y~~~~~~~~~~i~~fi~~~~~ 212 (360)
..++.|..+++.+...++.+.+
T Consensus 93 v~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 93 VGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEeCCCCHHHHHHHHHHHHh
Confidence 2345899999999999887654
No 293
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=95.73 E-value=0.19 Score=40.66 Aligned_cols=98 Identities=15% Similarity=0.228 Sum_probs=66.4
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhc-CceEEEEEeCCCc-------c-------------------cchhHHh
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADE-------D-------------------LAKPFLT 169 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~-~~i~f~~vd~~~~-------~-------------------~~~~l~~ 169 (360)
.+.+++++|+.+| +.|....+.+.++.++++ .++.|+.+..+.. . ..+.+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 4556788888888 899999999999999997 3588888766431 0 0134566
Q ss_pred hcCCCCCCCceEEEEeCCCcccccC---------CCCCCHHHHHHHHHHHhcCccCC
Q 018164 170 LFGLEESKNTVVTAFDNKAISKFLL---------ESDLTPSNIEEFCSRLLHGTLTP 217 (360)
Q Consensus 170 ~~gi~~~~p~~~~~~~~~~~~~y~~---------~~~~~~~~i~~fi~~~~~g~~~~ 217 (360)
.||+... |..+ +.+.++...|.. .+..+...+.+-|+..++|.-.+
T Consensus 104 ~~~v~~~-P~~~-lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 104 AYGAACT-PDFF-LFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred HcCCCcC-CcEE-EECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 7788766 7764 555443333321 12346788999999999876443
No 294
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=95.63 E-value=0.072 Score=41.77 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=34.6
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC--------ceEEEEEeCCC
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG--------KIMFTAVDIAD 160 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~--------~i~f~~vd~~~ 160 (360)
.+++++|.|+++| +.|.+..|.+.++.+++++ ++.++.|+.+.
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~ 75 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ 75 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC
Confidence 4568889999999 9999999999998876653 37777777663
No 295
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.52 E-value=0.12 Score=43.04 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=35.1
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA 159 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~ 159 (360)
++++++.|+++| +.|.+..+.+.++.++|.++ +.++.|+++
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 567888899999 99999999999999999864 888888763
No 296
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.45 E-value=0.13 Score=44.00 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=63.8
Q ss_pred EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc-c-----chhHHhhcCCCCCCCceEEEEeCCCcccccC-
Q 018164 123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-L-----AKPFLTLFGLEESKNTVVTAFDNKAISKFLL- 194 (360)
Q Consensus 123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~-~-----~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~- 194 (360)
+++||... +.|.++.+.++.++++|.=.+..+.+|+...+ | .....+.+|+..+ |.+++ .+.+....++.
T Consensus 147 L~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~-PAl~L-v~~~t~~~~pv~ 224 (248)
T PRK13703 147 LMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYF-PALML-VDPKSGSVRPLS 224 (248)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCccc-ceEEE-EECCCCcEEEEe
Confidence 56677766 89999999999999999977888888874321 0 1235678999887 88854 44444444443
Q ss_pred CCCCCHHHHHHHHHHHhcC
Q 018164 195 ESDLTPSNIEEFCSRLLHG 213 (360)
Q Consensus 195 ~~~~~~~~i~~fi~~~~~g 213 (360)
.|-++.+.|.+=+.....+
T Consensus 225 ~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 225 YGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred eccCCHHHHHHHHHHHHhc
Confidence 5778998888777766654
No 297
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.44 E-value=0.11 Score=43.43 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=59.1
Q ss_pred CccEEE-EEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--------------C--C-------------CC
Q 018164 248 HKDVLL-EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------------E--H-------------PK 297 (360)
Q Consensus 248 ~~~~~v-~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--------------~--~-------------~~ 297 (360)
++.++| .|++.||..|..-.+.+.++...|+.. ++.+..+.++.. . + ..
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 444544 688999999999999999999998653 455555554421 0 1 01
Q ss_pred CCCC------CCcEEEEEeCCCccCceE-e--cCCCCHHHHHHHHHHhc
Q 018164 298 LQVE------EYPTLLFYPAGDKANPIK-V--SARSSSKNIAAFIKEQL 337 (360)
Q Consensus 298 ~~i~------~~Pti~~~~~g~~~~~~~-~--~g~~~~~~l~~~i~~~~ 337 (360)
+++. .+|+.+++..++++..+. | .+.++.+++.+.|+...
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 2442 479999997665653222 2 34689999999997654
No 298
>PRK10824 glutaredoxin-4; Provisional
Probab=95.39 E-value=0.02 Score=42.81 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=35.3
Q ss_pred CccEEEEEeC----CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCCC-C----CCCCCcEEEEEeCCCc
Q 018164 248 HKDVLLEVYT----PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPK-L----QVEEYPTLLFYPAGDK 314 (360)
Q Consensus 248 ~~~~~v~f~~----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~~-~----~i~~~Pti~~~~~g~~ 314 (360)
+.+++|+.-+ |||++|......|..+. +.+..+|+..+ ++.. + +..++|.|++ +|..
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~ 80 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGEL 80 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEE
Confidence 4556655544 79999999988887762 33444566555 3321 1 5667888744 5544
No 299
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.38 E-value=0.015 Score=42.67 Aligned_cols=89 Identities=18% Similarity=0.248 Sum_probs=60.2
Q ss_pred ceEEEcCccccccccccCccEEEEEeCCC--ChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEE
Q 018164 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPW--CVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTL 306 (360)
Q Consensus 231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~--c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti 306 (360)
....++..+++.++ ......+++|.+.. |..|....-++-+|.+.|.+ .+..+.++-... .+ ..+++..+|++
T Consensus 10 g~~~vd~~~ld~~l-~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~PaL 86 (107)
T PF07449_consen 10 GWPRVDADTLDAFL-AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPAL 86 (107)
T ss_dssp TEEEE-CCCHHHHH-HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred CCeeechhhHHHHH-hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCeE
Confidence 45678888999987 44666666665442 34566666788899888987 677777773333 44 36899999999
Q ss_pred EEEeCCCccCceEecCCC
Q 018164 307 LFYPAGDKANPIKVSARS 324 (360)
Q Consensus 307 ~~~~~g~~~~~~~~~g~~ 324 (360)
+++++|.... ...|.+
T Consensus 87 vf~R~g~~lG--~i~gi~ 102 (107)
T PF07449_consen 87 VFFRDGRYLG--AIEGIR 102 (107)
T ss_dssp EEEETTEEEE--EEESSS
T ss_pred EEEECCEEEE--EecCee
Confidence 9999997652 344544
No 300
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=95.33 E-value=0.12 Score=39.45 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=34.2
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeC
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDI 158 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~ 158 (360)
.+++.++.||+.| +.|....+.+.++.++++. .+.++.|..
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 4567889999999 9999999999999999985 477776654
No 301
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.18 E-value=0.095 Score=42.84 Aligned_cols=106 Identities=22% Similarity=0.349 Sum_probs=80.4
Q ss_pred CceEEE-cCcccccccccc--CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcE
Q 018164 230 ANVQIV-VGKTFDDLVLNS--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPT 305 (360)
Q Consensus 230 ~~v~~l-~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pt 305 (360)
+.|..+ +++.|-+.+-.. ....+|..|.+.-.-|..+...+.-||..+. .++|.++-.+.-.. ..|....+|+
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP---~vKFckikss~~gas~~F~~n~lP~ 214 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP---IVKFCKIKSSNTGASDRFSLNVLPT 214 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC---ceeEEEeeeccccchhhhcccCCce
Confidence 457777 457788887433 3357888899999999999999999999886 58999998776644 5788899999
Q ss_pred EEEEeCCCcc-CceEec----CCCCHHHHHHHHHHhcC
Q 018164 306 LLFYPAGDKA-NPIKVS----ARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 306 i~~~~~g~~~-~~~~~~----g~~~~~~l~~~i~~~~~ 338 (360)
+++|++|.-+ +.++.. .......+..||+++--
T Consensus 215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGL 252 (273)
T ss_pred EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence 9999999775 222222 25666788889988643
No 302
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=95.13 E-value=0.23 Score=41.03 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=56.8
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC---------------CcccchhHHhhcCCCCCCCceE
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA---------------DEDLAKPFLTLFGLEESKNTVV 181 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~---------------~~~~~~~l~~~~gi~~~~p~~~ 181 (360)
.+++.++.|+++| +.|++..+.+.++.++...++.++..|.. .+.....+.+.||+... |..+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~-P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKI-PYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCcc-ceEE
Confidence 4567888999999 99999999999988776544544432100 00012355667777766 7764
Q ss_pred EEEeCCCcccccCCCC-CCHHHHHHHHHHHhcC
Q 018164 182 TAFDNKAISKFLLESD-LTPSNIEEFCSRLLHG 213 (360)
Q Consensus 182 ~~~~~~~~~~y~~~~~-~~~~~i~~fi~~~~~g 213 (360)
+.+.++.-.+ .|. .+.+.+.+.++....|
T Consensus 152 -lID~~G~I~~--~g~~~~~~~le~ll~~l~~~ 181 (189)
T TIGR02661 152 -LLDQDGKIRA--KGLTNTREHLESLLEADREG 181 (189)
T ss_pred -EECCCCeEEE--ccCCCCHHHHHHHHHHHHcC
Confidence 4444332233 343 3567788888776554
No 303
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=95.01 E-value=0.28 Score=41.89 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=36.0
Q ss_pred CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164 118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA 159 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~ 159 (360)
.+++++|.|++.| +.|....+.|.++.++|+++ +.++.|+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 3567889999999 99999999999999999864 888888764
No 304
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.053 Score=37.71 Aligned_cols=49 Identities=14% Similarity=0.334 Sum_probs=35.8
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--C-----CC-CCCCCcEEEE
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--P-----KL-QVEEYPTLLF 308 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~-----~~-~i~~~Pti~~ 308 (360)
+++|..++|++|+.....|.+. ++.+..+|++.+.. . .. +..++|.|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5678899999999988777733 56777777777642 1 22 5788999865
No 305
>PRK10638 glutaredoxin 3; Provisional
Probab=94.86 E-value=0.04 Score=38.63 Aligned_cols=49 Identities=8% Similarity=0.216 Sum_probs=34.9
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-CC-CC----CCCCCcEEEE
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-HP-KL----QVEEYPTLLF 308 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-~~-~~----~i~~~Pti~~ 308 (360)
+++|..+||++|...+..+++. ++.+..+|++.+. .. .+ +...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5678889999999998887764 4566677887662 32 22 5678898843
No 306
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=94.81 E-value=0.066 Score=44.01 Aligned_cols=88 Identities=9% Similarity=0.148 Sum_probs=59.0
Q ss_pred CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--------------------------CC-CCCC
Q 018164 248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------------------------EH-PKLQ 299 (360)
Q Consensus 248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--------------------------~~-~~~~ 299 (360)
.+.++|.|| +.||+.|....+.+.++...|... ++.+..+..+.- .+ ..++
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 568899999 999999999999999999998643 455555543331 11 1224
Q ss_pred C----CCC--cEEEEEeCCCccCce-Ee--cCCCCHHHHHHHHHHh
Q 018164 300 V----EEY--PTLLFYPAGDKANPI-KV--SARSSSKNIAAFIKEQ 336 (360)
Q Consensus 300 i----~~~--Pti~~~~~g~~~~~~-~~--~g~~~~~~l~~~i~~~ 336 (360)
+ .+. |+.+++..++++..+ .+ ...++.+++.+.|...
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 4 245 999999655554222 12 1357899999988643
No 307
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.74 E-value=0.21 Score=34.25 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=49.7
Q ss_pred EEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCC-CCCHHHHH
Q 018164 127 FAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES-DLTPSNIE 204 (360)
Q Consensus 127 ~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~-~~~~~~i~ 204 (360)
+.+. +.|..+...+++++..+ + +.+-.+|....+ .+ ..||+... |+++ + ++ +..+.| -.+.+.|.
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~---~~-~~ygv~~v-Palv-I-ng----~~~~~G~~p~~~el~ 72 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFE---EI-EKYGVMSV-PALV-I-NG----KVVFVGRVPSKEELK 72 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHH---HH-HHTT-SSS-SEEE-E-TT----EEEEESS--HHHHHH
T ss_pred eCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHH---HH-HHcCCCCC-CEEE-E-CC----EEEEEecCCCHHHHH
Confidence 6677 89999999999999999 4 777777876553 55 99999998 8883 3 32 233467 57888888
Q ss_pred HHHH
Q 018164 205 EFCS 208 (360)
Q Consensus 205 ~fi~ 208 (360)
+|++
T Consensus 73 ~~l~ 76 (76)
T PF13192_consen 73 ELLE 76 (76)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8874
No 308
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.43 E-value=0.11 Score=40.94 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=31.7
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~ 290 (360)
+.+.+++.|+.++|++|..+.+.+.++...+. ++.+...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP---DVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC---CceEEEEeC
Confidence 35678999999999999999999998876653 455555544
No 309
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=94.20 E-value=0.33 Score=35.85 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=55.3
Q ss_pred CcccccccccCC-CceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC
Q 018164 108 TDINSASVHSSP-IKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN 186 (360)
Q Consensus 108 ~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~ 186 (360)
+.+.++.+.... ...+|.||....+ .....|.++|..++....|+..... .+...+++.. |+++++.+.
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~--~~~~~F~~vA~~~Rdd~~F~~t~~~------~~~~~~~~~~--~~vvl~rp~ 76 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED--PAYQLYQDAANSLREDYKFHHTFDS------EIFKSLKVSP--GQLVVFQPE 76 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC--HHHHHHHHHHHhcccCCEEEEEChH------HHHHhcCCCC--CceEEECcH
Confidence 333455555444 4555666654422 3456789999999988999776443 5667777753 566444322
Q ss_pred CC-----cccccCCCC-CCHHH-HHHHHHH
Q 018164 187 KA-----ISKFLLESD-LTPSN-IEEFCSR 209 (360)
Q Consensus 187 ~~-----~~~y~~~~~-~~~~~-i~~fi~~ 209 (360)
.- .....|.|. .+.+. |.+|+.+
T Consensus 77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 11 122334666 56655 9999875
No 310
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.17 E-value=0.24 Score=31.60 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=41.4
Q ss_pred EEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHH---hhcCCCCCCCceEEEEeC
Q 018164 124 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFL---TLFGLEESKNTVVTAFDN 186 (360)
Q Consensus 124 v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~---~~~gi~~~~p~~~~~~~~ 186 (360)
++|+..+ +.|.++.+.+.++ ......+.+..++++... ... ..+++... |+++ +.+.
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-P~~~-~~~~ 62 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDP---ALEKELKRYGVGGV-PTLV-VFGP 62 (69)
T ss_pred EEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCCh---HHhhHHHhCCCccc-cEEE-EEeC
Confidence 5677777 8999999999888 444556999999998764 333 36677776 8874 4443
No 311
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=94.04 E-value=0.13 Score=35.92 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=37.5
Q ss_pred ccCCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCcc
Q 018164 116 HSSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADED 162 (360)
Q Consensus 116 ~~~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~ 162 (360)
...+++.+|+|+++| ..|+.+...+ .++.+.+.+++.++.+|.+..+
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~ 64 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED 64 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC
Confidence 346788999999999 9999988876 4566656677999999998654
No 312
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.90 E-value=0.11 Score=37.97 Aligned_cols=89 Identities=13% Similarity=0.215 Sum_probs=55.9
Q ss_pred cccccccccc-CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-----CCCCC-CCcEEEEE
Q 018164 238 KTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-----KLQVE-EYPTLLFY 309 (360)
Q Consensus 238 ~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-----~~~i~-~~Pti~~~ 309 (360)
+.+++++..+ .++++|+=+++.|+-+......|++......+ .+.++.+|+-.+ ++. +++|. .-|.++++
T Consensus 8 eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 8 EQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp HHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred HHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 5566666333 66788877999999999988888888887765 489999998887 542 45765 57999999
Q ss_pred eCCCccCceEecCCCCHHHH
Q 018164 310 PAGDKANPIKVSARSSSKNI 329 (360)
Q Consensus 310 ~~g~~~~~~~~~g~~~~~~l 329 (360)
++|+-+- -.-.+.++.+.|
T Consensus 86 ~~g~~v~-~aSH~~It~~~l 104 (105)
T PF11009_consen 86 KNGKVVW-HASHWDITAEAL 104 (105)
T ss_dssp ETTEEEE-EEEGGG-SHHHH
T ss_pred ECCEEEE-ECccccCCHHhc
Confidence 9996631 011245666655
No 313
>PRK15000 peroxidase; Provisional
Probab=93.88 E-value=0.13 Score=42.81 Aligned_cols=88 Identities=8% Similarity=0.113 Sum_probs=59.9
Q ss_pred cCccEEEEEeCC-CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-----------------C-------------
Q 018164 247 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----------------H------------- 295 (360)
Q Consensus 247 ~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----------------~------------- 295 (360)
..+.++|+||.. ||..|....+.+.+++..|+.. ++.+..+.++... +
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 467899999994 9999999999999999999753 4555555544210 0
Q ss_pred CCCCCC------CCcEEEEEeCCCccCceE-e--cCCCCHHHHHHHHHH
Q 018164 296 PKLQVE------EYPTLLFYPAGDKANPIK-V--SARSSSKNIAAFIKE 335 (360)
Q Consensus 296 ~~~~i~------~~Pti~~~~~g~~~~~~~-~--~g~~~~~~l~~~i~~ 335 (360)
..+++. .+|+.+++...+.+.... + .-.++.+++.+.|+.
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 012444 589999997555542221 1 125789999998865
No 314
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.80 E-value=0.27 Score=42.58 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=26.0
Q ss_pred CCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHH
Q 018164 298 LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIK 334 (360)
Q Consensus 298 ~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~ 334 (360)
+++++.|++++-..... +....|....+.|.++|.
T Consensus 215 lGv~GTPaiv~~d~~G~--~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 215 LGANATPAIYYMDKDGT--LQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred cCCCCCCEEEEECCCCC--EEEecCCCCHHHHHHHhC
Confidence 47899999998753222 335779999999988774
No 315
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=93.79 E-value=0.33 Score=37.10 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=41.0
Q ss_pred cccCCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCC
Q 018164 115 VHSSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA 188 (360)
Q Consensus 115 ~~~~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~ 188 (360)
.-..+++++|.|+++| ..|+.+...+ .++++..+..+..+.++.+..+ .-....| ... |++ ++++.++
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td---~~~~~~g-~~v-Pti-vFld~~g 90 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD---KNLSPDG-QYV-PRI-MFVDPSL 90 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC---CCcCccC-ccc-CeE-EEECCCC
Confidence 3456788899999999 9999988864 3455555545555566654221 1111233 233 777 4555543
No 316
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.68 E-value=0.52 Score=34.48 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=50.1
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC-CcccchhHHhhcC--CCCCCCceEEEEeC
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA-DEDLAKPFLTLFG--LEESKNTVVTAFDN 186 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~-~~~~~~~l~~~~g--i~~~~p~~~~~~~~ 186 (360)
+.+.++.|+++| +.|..+.+.+.++++++...+.+..+|.. ... .+...++ +... |+++...+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~-p~~~~~~~~ 99 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENP---DLAAEFGVAVRSI-PTLLLFKDG 99 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCCh---HHHHHHhhhhccC-CeEEEEeCc
Confidence 445666678899 99999999999999999977899999986 443 7788888 7777 777533333
No 317
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.60 E-value=0.29 Score=38.92 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=36.0
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~ 291 (360)
+.+.+++.|+...|++|.++.+.+.++.+.+-+..++.+...+..
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 456789999999999999999999999888833337888888763
No 318
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=93.51 E-value=0.62 Score=35.29 Aligned_cols=93 Identities=14% Similarity=0.235 Sum_probs=61.4
Q ss_pred cccccc-cccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE-EEeCCCc
Q 018164 239 TFDDLV-LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL-FYPAGDK 314 (360)
Q Consensus 239 ~~~~~~-~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~-~~~~g~~ 314 (360)
..++.+ ...++.+++-|-.+|-..|.++-..+.++|.+.++ -..++.+|++.- +.. .+.+. -|..+ +|=+++.
T Consensus 10 ~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkh 86 (133)
T PF02966_consen 10 HVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKH 86 (133)
T ss_dssp HHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEE
T ss_pred hHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEEecCeE
Confidence 344444 34578899999999999999999999999999987 688899998855 442 34677 67654 4435544
Q ss_pred cCceEe--------cC-CCCHHHHHHHHHH
Q 018164 315 ANPIKV--------SA-RSSSKNIAAFIKE 335 (360)
Q Consensus 315 ~~~~~~--------~g-~~~~~~l~~~i~~ 335 (360)
. .+.+ ++ ..+.+++++.|.-
T Consensus 87 m-~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 87 M-MVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp E-EEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred E-EEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 3 1222 22 2445777766654
No 319
>PLN02412 probable glutathione peroxidase
Probab=93.37 E-value=0.68 Score=37.32 Aligned_cols=41 Identities=15% Similarity=0.052 Sum_probs=34.6
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA 159 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~ 159 (360)
++++++.|+++| +.|.+..+.++++.++|+++ +.++.|.++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 466778889999 88998899999999999965 888888764
No 320
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=93.33 E-value=1 Score=35.65 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=34.6
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeC
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDI 158 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~ 158 (360)
+++++|.++++| +.|....+.+.++.++|+. .+.++.++|
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 456778899999 9999999999999999985 488888886
No 321
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=93.32 E-value=0.47 Score=37.06 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=35.1
Q ss_pred CCCceEEEEEEe-c-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCc
Q 018164 118 SPIKLQVYVFAK-A-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADE 161 (360)
Q Consensus 118 ~~~~~~v~f~~~-~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~ 161 (360)
.+++.+|.||.. | +.|....+.+.++++.++.+ +.++.+.....
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~ 73 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD 73 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCC
Confidence 456788999999 9 99999999999999997754 77766655533
No 322
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.05 E-value=0.4 Score=45.70 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=66.3
Q ss_pred ccccccCCC--ceEEEEEEec-cchHHHHHH-HH--HHHHhhcCceEEEEEeCCCc-ccchhHHhhcCCCCCCCceEEEE
Q 018164 112 SASVHSSPI--KLQVYVFAKA-DDLKSLLEP-LE--DIARNFKGKIMFTAVDIADE-DLAKPFLTLFGLEESKNTVVTAF 184 (360)
Q Consensus 112 ~~~~~~~~~--~~~v~f~~~~-~~~~~~~~~-~~--~la~~~~~~i~f~~vd~~~~-~~~~~l~~~~gi~~~~p~~~~~~ 184 (360)
.+.....++ |+++-||++| -.|+.+.+. |. ++..+..+ +....+|.+++ +-.+.+++++|+-+- |++ +++
T Consensus 465 L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~-P~~-~ff 541 (569)
T COG4232 465 LDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGV-PTY-LFF 541 (569)
T ss_pred HHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCC-CEE-EEE
Confidence 344444444 8889999999 999987763 32 34444444 88889997743 333567899998776 666 566
Q ss_pred eCCCcccccCCCCCCHHHHHHHHHHH
Q 018164 185 DNKAISKFLLESDLTPSNIEEFCSRL 210 (360)
Q Consensus 185 ~~~~~~~y~~~~~~~~~~i~~fi~~~ 210 (360)
+.++...-...|-++.+.+.++++..
T Consensus 542 ~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 542 GPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCCcCcCCcceecHHHHHHHHHHh
Confidence 65444444467889999999998764
No 323
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=0.18 Score=36.89 Aligned_cols=57 Identities=14% Similarity=0.289 Sum_probs=37.9
Q ss_pred cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CCCCC-----CCCCCcEEEEEeCCCc
Q 018164 250 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPKL-----QVEEYPTLLFYPAGDK 314 (360)
Q Consensus 250 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~~~~-----~i~~~Pti~~~~~g~~ 314 (360)
.-+|+|..+||..|..+...|.. +.. ...+..+|-..+ +++.. +.+++|.+++ +|+-
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~ 77 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKF 77 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEE
Confidence 34567899999999998877777 333 567777776655 33321 4458888854 5533
No 324
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=1.9 Score=33.71 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=60.1
Q ss_pred CCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCcc-------------cchhHHhhcCCCCCCCceE
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADED-------------LAKPFLTLFGLEESKNTVV 181 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~-------------~~~~l~~~~gi~~~~p~~~ 181 (360)
++-.+++|=.+. .-|.++...+ .++.+-+.+.+.+++++..... -.++|++.|+++++ |++
T Consensus 42 ~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst-Ptf- 119 (182)
T COG2143 42 DKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST-PTF- 119 (182)
T ss_pred CcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC-ceE-
Confidence 333444444444 7798887765 4456666666777777765331 11488999999999 999
Q ss_pred EEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164 182 TAFDNKAISKFLLESDLTPSNIEEFCSRLLHG 213 (360)
Q Consensus 182 ~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g 213 (360)
++++..+...+...|.+..++...-+.=+-.|
T Consensus 120 vFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 120 VFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred EEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 57777655666667888887665544443333
No 325
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=92.85 E-value=0.19 Score=41.98 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=32.9
Q ss_pred cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 018164 250 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 292 (360)
Q Consensus 250 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 292 (360)
.+|+.|++.||..|....+.+.+++..|++. ++.+.-+.++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCC
Confidence 3455788999999999999999999999753 56666665543
No 326
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.67 E-value=0.22 Score=40.37 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=35.9
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 292 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 292 (360)
+.+..++.|+.+.|++|..+.+.+..+.+++.+ ++.+..+....
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~~~~ 57 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVPVVF 57 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcCCcc
Confidence 467889999999999999999999999888855 67666555443
No 327
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=92.59 E-value=2.7 Score=30.53 Aligned_cols=103 Identities=9% Similarity=0.056 Sum_probs=71.6
Q ss_pred EEEcCcccccccc-ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--C----CCCCC-CCc
Q 018164 233 QIVVGKTFDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--P----KLQVE-EYP 304 (360)
Q Consensus 233 ~~l~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~-~~P 304 (360)
+++...++.+.-. +-++..++-|-.+-...-.++.++++++|+....++++.|+.||-+...+ + .|+|. .-|
T Consensus 4 rkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~P 83 (120)
T cd03074 4 RKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRP 83 (120)
T ss_pred hhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCC
Confidence 3444444444332 22567888888888888889999999999999888899999999887733 1 34443 249
Q ss_pred EEEEEeCCCccCceEec--C---CCCHHHHHHHHHHh
Q 018164 305 TLLFYPAGDKANPIKVS--A---RSSSKNIAAFIKEQ 336 (360)
Q Consensus 305 ti~~~~~g~~~~~~~~~--g---~~~~~~l~~~i~~~ 336 (360)
.|-+..-.... .+-+. + ..+++.|..||.+.
T Consensus 84 qIGVV~vtdad-SvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 84 QIGVVNVTDAD-SVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred ceeeEeccccc-ceeEecccccccCcHHHHHHHHHhh
Confidence 99888554442 33333 3 37889999999864
No 328
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=92.56 E-value=2.5 Score=30.34 Aligned_cols=75 Identities=9% Similarity=0.180 Sum_probs=51.3
Q ss_pred CccE-EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEEEEEeCCCccCceEecCCCCH
Q 018164 248 HKDV-LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSS 326 (360)
Q Consensus 248 ~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~ 326 (360)
.+++ ++.|..+. ..|..+...++++|..-. ++.+-..+... ..|++.+..+|... .++|.|-..-
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~~---------~~P~~~i~~~~~~~-gIrF~GiP~G 83 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDDE---------RKPSFSINRPGEDT-GIRFAGIPMG 83 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCCC---------CCCEEEEecCCCcc-cEEEEecCCc
Confidence 4444 44454444 889998888888876542 56554333211 46999998777443 5899999999
Q ss_pred HHHHHHHHHh
Q 018164 327 KNIAAFIKEQ 336 (360)
Q Consensus 327 ~~l~~~i~~~ 336 (360)
.++..||...
T Consensus 84 hEf~Slilai 93 (94)
T cd02974 84 HEFTSLVLAL 93 (94)
T ss_pred hhHHHHHHHh
Confidence 9999888653
No 329
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=92.48 E-value=0.29 Score=42.45 Aligned_cols=88 Identities=8% Similarity=0.097 Sum_probs=57.9
Q ss_pred CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-----------------CC-------------C
Q 018164 248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----------------EH-------------P 296 (360)
Q Consensus 248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------~~-------------~ 296 (360)
++.++++|| +.||..|..-.+.|.++...|++. ++.+.-+.++.- .+ .
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 456777777 899999999999999999999653 344444444331 11 0
Q ss_pred CCCCC-----CCcEEEEEeCCCccCceE-e--cCCCCHHHHHHHHHHh
Q 018164 297 KLQVE-----EYPTLLFYPAGDKANPIK-V--SARSSSKNIAAFIKEQ 336 (360)
Q Consensus 297 ~~~i~-----~~Pti~~~~~g~~~~~~~-~--~g~~~~~~l~~~i~~~ 336 (360)
.+++. ..|+.+++..++.+.... + ...++.+++.+.|...
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 22442 479999997555542222 2 2367999999988643
No 330
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=92.23 E-value=0.31 Score=40.56 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=56.3
Q ss_pred CccEEEEEeC-CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C----------------C-------------C
Q 018164 248 HKDVLLEVYT-PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E----------------H-------------P 296 (360)
Q Consensus 248 ~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~----------------~-------------~ 296 (360)
++.++|+||. .||..|....+.+.++++.|... ++.+..|.++.. . + .
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 5678889994 78999998888999999999754 566666655432 1 0 0
Q ss_pred CCCCC------CCcEEEEEeCCCccCceEe---cCCCCHHHHHHHHHHh
Q 018164 297 KLQVE------EYPTLLFYPAGDKANPIKV---SARSSSKNIAAFIKEQ 336 (360)
Q Consensus 297 ~~~i~------~~Pti~~~~~g~~~~~~~~---~g~~~~~~l~~~i~~~ 336 (360)
.+++. .+|+.+++.....+..... .-.++.+++++.|...
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 11332 3688888865555422211 1246777888777643
No 331
>PRK13599 putative peroxiredoxin; Provisional
Probab=92.14 E-value=0.27 Score=41.44 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=58.7
Q ss_pred Ccc-EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----------------CC-------------CC
Q 018164 248 HKD-VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------------EH-------------PK 297 (360)
Q Consensus 248 ~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------------~~-------------~~ 297 (360)
++. +|+.|++.||+.|..-.+.+.+++.+|... ++.+.-+.++.. .+ ..
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 344 467889999999999999999999998643 455555554431 01 01
Q ss_pred CCC-------CCCcEEEEEeCCCccCceE-ec--CCCCHHHHHHHHHHh
Q 018164 298 LQV-------EEYPTLLFYPAGDKANPIK-VS--ARSSSKNIAAFIKEQ 336 (360)
Q Consensus 298 ~~i-------~~~Pti~~~~~g~~~~~~~-~~--g~~~~~~l~~~i~~~ 336 (360)
+++ ...|+++++..++++..+. |. ..++.+++.+.|...
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 233 2579999997655653332 22 357899999988753
No 332
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=92.13 E-value=0.78 Score=30.59 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=46.9
Q ss_pred EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCccc-chhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCH
Q 018164 123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTP 200 (360)
Q Consensus 123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~-~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~ 200 (360)
+.+|+.+| +.|..+.+.|.+ ..+.+..+|.+..+. ...+++.+|+... |+++ + . + .. +.| .+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~v-P~~~-~-~-~--~~--~~g-~~~ 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGV-PVIV-I-G-H--KI--IVG-FDP 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcc-cEEE-E-C-C--EE--Eee-CCH
Confidence 35777888 999998877765 237888888875431 1235677888877 8774 3 2 2 22 234 577
Q ss_pred HHHHHHHH
Q 018164 201 SNIEEFCS 208 (360)
Q Consensus 201 ~~i~~fi~ 208 (360)
+.|.+|++
T Consensus 67 ~~i~~~i~ 74 (74)
T TIGR02196 67 EKLDQLLE 74 (74)
T ss_pred HHHHHHhC
Confidence 88888763
No 333
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=91.86 E-value=0.35 Score=34.32 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=30.7
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 293 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~ 293 (360)
+..|+.+.|++|..+.+.+.++.....+ ++.+....+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~ 40 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPLL 40 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEeccccC
Confidence 3679999999999999999999855555 666666655443
No 334
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=91.81 E-value=2.5 Score=31.68 Aligned_cols=91 Identities=22% Similarity=0.246 Sum_probs=63.4
Q ss_pred CceEEE-EEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccC-CC
Q 018164 120 IKLQVY-VFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL-ES 196 (360)
Q Consensus 120 ~~~~v~-f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~-~~ 196 (360)
...+++ |=.+| +.|-++...+.++|....+-..+..+|.++-+ .+.+.|++... |+++.++++.. -+..+ .|
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~---~~~~~~~l~~p-~tvmfFfn~kH-mkiD~gtg 97 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVP---DFVKMYELYDP-PTVMFFFNNKH-MKIDLGTG 97 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhh---hhhhhhcccCC-ceEEEEEcCce-EEEeeCCC
Confidence 344444 44455 88999999999999999987777888888765 88999999876 77766665542 22222 22
Q ss_pred C--------CCHHHHHHHHHHHhcCcc
Q 018164 197 D--------LTPSNIEEFCSRLLHGTL 215 (360)
Q Consensus 197 ~--------~~~~~i~~fi~~~~~g~~ 215 (360)
+ .+.+.+..-++....|..
T Consensus 98 dn~Kin~~~~~kq~~Idiie~iyRga~ 124 (142)
T KOG3414|consen 98 DNNKINFAFEDKQEFIDIIETIYRGAR 124 (142)
T ss_pred CCceEEEEeccHHHHHHHHHHHHHhhh
Confidence 2 356777777777766543
No 335
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=91.71 E-value=0.27 Score=45.87 Aligned_cols=49 Identities=8% Similarity=0.214 Sum_probs=35.8
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-C----C---------CCCCCCcEEEE
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-P----K---------LQVEEYPTLLF 308 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~----~---------~~i~~~Pti~~ 308 (360)
+++|..+||++|......+.+. ++.+..+|++++.- . + .+..++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999988777764 46777788876531 1 1 24568899955
No 336
>PRK13191 putative peroxiredoxin; Provisional
Probab=91.67 E-value=0.36 Score=40.69 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=57.8
Q ss_pred CccEE-EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC----------------C-------------CC
Q 018164 248 HKDVL-LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE----------------H-------------PK 297 (360)
Q Consensus 248 ~~~~~-v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----------------~-------------~~ 297 (360)
++.++ +.|++.||..|..-.+.|.+++..|+.. ++.+..+.++... + ..
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 44444 4778999999999999999999999653 4555555544321 0 01
Q ss_pred CCC-------CCCcEEEEEeCCCccCceE-ec--CCCCHHHHHHHHHHh
Q 018164 298 LQV-------EEYPTLLFYPAGDKANPIK-VS--ARSSSKNIAAFIKEQ 336 (360)
Q Consensus 298 ~~i-------~~~Pti~~~~~g~~~~~~~-~~--g~~~~~~l~~~i~~~ 336 (360)
+++ ...|+.+++..++.+..+. +. -.++.+++.+.|+..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 232 1368888887665653322 22 257999999999754
No 337
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=91.29 E-value=2.6 Score=34.44 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=68.7
Q ss_pred HhhccCCceeecCcccccc-cccCC-Cce-EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhc
Q 018164 96 LNYNKFPLVTKLTDINSAS-VHSSP-IKL-QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLF 171 (360)
Q Consensus 96 i~~~~~p~v~~l~~~~~~~-~~~~~-~~~-~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~ 171 (360)
...+.+..|.+++-..|.. +...+ ..| +|.+|... ..|.-+...|+.+|.+|+. +.|+.+-+... ...|
T Consensus 85 ~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c------IpNY 157 (240)
T KOG3170|consen 85 AEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC------IPNY 157 (240)
T ss_pred HHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc------cCCC
Confidence 4456778888888777654 22222 233 45677766 8899999999999999996 89988765522 1112
Q ss_pred CCCCCCCceEEEEeCCCccccc----CCCC-CCHHHHHHHHHH
Q 018164 172 GLEESKNTVVTAFDNKAISKFL----LESD-LTPSNIEEFCSR 209 (360)
Q Consensus 172 gi~~~~p~~~~~~~~~~~~~y~----~~~~-~~~~~i~~fi~~ 209 (360)
-=... ||+++|..+.-...+. +.|. .+.+.+..++-+
T Consensus 158 Pe~nl-PTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 158 PESNL-PTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred cccCC-CeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 22233 9998777664322221 2333 688888888766
No 338
>PRK13189 peroxiredoxin; Provisional
Probab=90.77 E-value=0.5 Score=40.10 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=57.0
Q ss_pred Cc-cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----------------CC-------------CC
Q 018164 248 HK-DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------------EH-------------PK 297 (360)
Q Consensus 248 ~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------------~~-------------~~ 297 (360)
++ .+|+.|++.||..|....+.+.+++..|+.. ++.+..+.++.. .+ ..
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 44 4455678999999999999999999999653 455555544321 00 01
Q ss_pred CCCC-------CCcEEEEEeCCCccCceEec---CCCCHHHHHHHHHHh
Q 018164 298 LQVE-------EYPTLLFYPAGDKANPIKVS---ARSSSKNIAAFIKEQ 336 (360)
Q Consensus 298 ~~i~-------~~Pti~~~~~g~~~~~~~~~---g~~~~~~l~~~i~~~ 336 (360)
+++. ..|+.+++...+.+..+.+. ..++.+++.+.|+..
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 2332 46888998655555333222 467889999998754
No 339
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=89.59 E-value=1.2 Score=36.59 Aligned_cols=103 Identities=16% Similarity=0.213 Sum_probs=66.4
Q ss_pred CceeecCcc-cccccccCC---CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164 102 PLVTKLTDI-NSASVHSSP---IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES 176 (360)
Q Consensus 102 p~v~~l~~~-~~~~~~~~~---~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~ 176 (360)
..|.+++.. .|.+.+... ...+|.+|.+- ..|+.+...+.=||.+|+. +.|+.+-.+.- ...+.|..+..
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~~----gas~~F~~n~l 212 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSNT----GASDRFSLNVL 212 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeeccc----cchhhhcccCC
Confidence 456676653 344444332 23456778777 8899999999999999995 99999988765 45677888777
Q ss_pred CCceEEEEeCCCcccc-----cCCCCCCHHHHHHHHHHH
Q 018164 177 KNTVVTAFDNKAISKF-----LLESDLTPSNIEEFCSRL 210 (360)
Q Consensus 177 ~p~~~~~~~~~~~~~y-----~~~~~~~~~~i~~fi~~~ 210 (360)
|++.+|..+.-..-| .+..++....+..|++++
T Consensus 213 -P~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 213 -PTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred -ceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 998544433211111 112335555666666664
No 340
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=89.25 E-value=1.1 Score=31.05 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=36.3
Q ss_pred EEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc--cchhHHhhcCCCCCCCce
Q 018164 124 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED--LAKPFLTLFGLEESKNTV 180 (360)
Q Consensus 124 v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~--~~~~l~~~~gi~~~~p~~ 180 (360)
++|+.+| +.|.++.+.+.++. ....+.+..+|..... ....+.+..|+... |++
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~v-P~v 58 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTV-PNI 58 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCC-CeE
Confidence 6788889 99999999998876 3334667777765332 01124555677776 887
No 341
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=88.98 E-value=1.4 Score=34.22 Aligned_cols=54 Identities=9% Similarity=0.010 Sum_probs=39.3
Q ss_pred CCceEEEEEEec--cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCC
Q 018164 119 PIKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGL 173 (360)
Q Consensus 119 ~~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi 173 (360)
+++.++.||..| +.|...++.+.++.++++ .+.++.|..+.....+.+.+.+++
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~ 81 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGV 81 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCC
Confidence 457788888877 679999999999999997 488888887643211234455554
No 342
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=88.94 E-value=0.18 Score=43.96 Aligned_cols=87 Identities=15% Similarity=0.248 Sum_probs=65.2
Q ss_pred ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--C-CCCCCCCCcEEEEEeCCCccCceEecC
Q 018164 246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--H-PKLQVEEYPTLLFYPAGDKANPIKVSA 322 (360)
Q Consensus 246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~-~~~~i~~~Pti~~~~~g~~~~~~~~~g 322 (360)
++..++-+.||+.||+.....+|.+.-....+.. +.-..++-.... + ..+++.+.|++.+...-- +.+|-|
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~---~~~~~~ 147 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC---PASYRG 147 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeecccc---chhhcc
Confidence 3455788999999999999999999888887763 222223322221 1 356899999999885543 458999
Q ss_pred CCCHHHHHHHHHHhcC
Q 018164 323 RSSSKNIAAFIKEQLK 338 (360)
Q Consensus 323 ~~~~~~l~~~i~~~~~ 338 (360)
.++..+|.+|-.+.+.
T Consensus 148 ~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 148 ERDLASLVNFYTEITP 163 (319)
T ss_pred cccHHHHHHHHHhhcc
Confidence 9999999999998875
No 343
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=88.65 E-value=1.6 Score=32.81 Aligned_cols=55 Identities=15% Similarity=0.301 Sum_probs=41.8
Q ss_pred CCCceEEEEEEe-c-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcC
Q 018164 118 SPIKLQVYVFAK-A-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFG 172 (360)
Q Consensus 118 ~~~~~~v~f~~~-~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~g 172 (360)
.+++.+|.||.. | +.|....+.+.++..+++. .+.++.|..+....-+.+++.++
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~ 81 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG 81 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc
Confidence 457888899998 8 9999999999999999985 48888888775431234455555
No 344
>PTZ00256 glutathione peroxidase; Provisional
Probab=88.49 E-value=4.8 Score=32.89 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=32.1
Q ss_pred CCce-EEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164 119 PIKL-QVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA 159 (360)
Q Consensus 119 ~~~~-~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~ 159 (360)
++++ ++++++.| +.|.+.++.+.++.++|+++ +.++.|+++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 4444 34558888 99999999999999999864 888888764
No 345
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=88.28 E-value=0.72 Score=33.89 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=51.3
Q ss_pred eeecCcccccccccCCCceEEEEEEec----cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164 104 VTKLTDINSASVHSSPIKLQVYVFAKA----DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 179 (360)
Q Consensus 104 v~~l~~~~~~~~~~~~~~~~v~f~~~~----~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~ 179 (360)
+..++.++++.+...+.. .++|+... ..+....-.+=++.+.|.+.+..+.+..... +.+...||+... |+
T Consensus 11 ~~~vd~~~ld~~l~~~~~-~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e---~~L~~r~gv~~~-Pa 85 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPGD-AVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAE---RALAARFGVRRW-PA 85 (107)
T ss_dssp EEEE-CCCHHHHHHCCSC-EEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHH---HHHHHHHT-TSS-SE
T ss_pred CeeechhhHHHHHhCCCc-EEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhH---HHHHHHhCCccC-Ce
Confidence 345567777777766544 45555543 3344455567788899999998888885544 488999999998 99
Q ss_pred eEEEEeCC
Q 018164 180 VVTAFDNK 187 (360)
Q Consensus 180 ~~~~~~~~ 187 (360)
++ ++..+
T Consensus 86 Lv-f~R~g 92 (107)
T PF07449_consen 86 LV-FFRDG 92 (107)
T ss_dssp EE-EEETT
T ss_pred EE-EEECC
Confidence 85 44443
No 346
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=88.23 E-value=0.95 Score=37.56 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.9
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHH
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEK 272 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~ 272 (360)
+.+..++.|+.+.|++|+++.+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 46789999999999999999988875
No 347
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=88.15 E-value=0.7 Score=38.70 Aligned_cols=41 Identities=15% Similarity=0.343 Sum_probs=32.3
Q ss_pred CccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeC
Q 018164 248 HKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDA 290 (360)
Q Consensus 248 ~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~ 290 (360)
.++.+|.|++-.|+||..+.+.+ ..+.+.+.+ ++.+.++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEecc
Confidence 35679999999999999999876 777877765 566666654
No 348
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=88.12 E-value=3.4 Score=31.78 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=29.9
Q ss_pred CCceEEEEEE-ec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCC
Q 018164 119 PIKLQVYVFA-KA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIA 159 (360)
Q Consensus 119 ~~~~~v~f~~-~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~ 159 (360)
+++.++.||. .| +.|....+.+.++.+++.+ .+.++.|..+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d 66 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD 66 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4567777774 56 7899999999999988874 3666666544
No 349
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=87.81 E-value=4 Score=33.37 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=53.1
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHh-hcC-ce-EEEEEeCCCc-------------------c-------cchhHH
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARN-FKG-KI-MFTAVDIADE-------------------D-------LAKPFL 168 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~-~~~-~i-~f~~vd~~~~-------------------~-------~~~~l~ 168 (360)
++..+|-|++.| ..|+.-+|.+..++.+ +.- +. +...||.++. + -...+.
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~ 138 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK 138 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence 667788888888 8888888888887643 221 00 0022222210 0 001345
Q ss_pred hhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164 169 TLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 169 ~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi 207 (360)
..+|+.+. |+.+.+.+.++.-.+...|.++.+.+.+.+
T Consensus 139 ~~~gv~~~-P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 139 NAWQLNSE-DSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred HhcCCCCC-CceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 67788777 776446666655566668888888887743
No 350
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=87.55 E-value=1.8 Score=34.76 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=41.0
Q ss_pred CCceEEEEEEec--cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCC
Q 018164 119 PIKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE 174 (360)
Q Consensus 119 ~~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~ 174 (360)
+++.++.||..| +.|....+.|.++++++. .+.++.|..+.....+.+++.+|+.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~ 100 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLE 100 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCC
Confidence 456788899888 679999999999999995 5777777766432234566776664
No 351
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=86.48 E-value=3.3 Score=32.63 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=29.5
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcCc---eEEEEEeCC
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK---IMFTAVDIA 159 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~---i~f~~vd~~ 159 (360)
++...++|-+.| ++|+.+.|.+.++-...+.. +-++.|..+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 455667777888 99999999888887777765 444444444
No 352
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=86.07 E-value=13 Score=28.30 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=57.9
Q ss_pred eEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCC--------cccc
Q 018164 122 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA--------ISKF 192 (360)
Q Consensus 122 ~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~--------~~~y 192 (360)
.++-|=.+| +.|-++...+.++|.+.++-..+..+|.++-+ ++.+.|.+. . |..+.++-.++ +...
T Consensus 23 vViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vp---dfn~~yel~-d-P~tvmFF~rnkhm~vD~Gtgnnn 97 (133)
T PF02966_consen 23 VVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVP---DFNQMYELY-D-PCTVMFFFRNKHMMVDFGTGNNN 97 (133)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTH---CCHHHTTS--S-SEEEEEEETTEEEEEESSSSSSS
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccch---hhhcccccC-C-CeEEEEEecCeEEEEEecCCCcc
Confidence 334444455 88999999999999999988888899999776 888999998 4 76555552222 1122
Q ss_pred cCCCC-CCHHHHHHHHHHHhcC
Q 018164 193 LLESD-LTPSNIEEFCSRLLHG 213 (360)
Q Consensus 193 ~~~~~-~~~~~i~~fi~~~~~g 213 (360)
++.+- -+.+++..-++....|
T Consensus 98 Kin~~~~~kqe~iDiie~iyrg 119 (133)
T PF02966_consen 98 KINWAFEDKQEFIDIIETIYRG 119 (133)
T ss_dssp SBCS--SCHHHHHHHHHHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHHH
Confidence 22333 3567777777776544
No 353
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=85.72 E-value=8.3 Score=31.09 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=30.0
Q ss_pred CCceEEEEE-Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCC
Q 018164 119 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIA 159 (360)
Q Consensus 119 ~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~ 159 (360)
++..+|.|| ..| ..|....+.|.+++++|.+ .+.++.|..+
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d 72 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD 72 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 455666666 577 8999999999999999974 3656555543
No 354
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=85.61 E-value=1 Score=32.99 Aligned_cols=78 Identities=13% Similarity=0.087 Sum_probs=45.2
Q ss_pred EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC--CC----CCCCCcEEEEEeCCCc-cCceEe--cCC
Q 018164 253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP--KL----QVEEYPTLLFYPAGDK-ANPIKV--SAR 323 (360)
Q Consensus 253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~--~~----~i~~~Pti~~~~~g~~-~~~~~~--~g~ 323 (360)
.+|+.|+|+.|++....+++. ++.+-.+|+..+... ++ +..+.+.--++...+. .+...- ...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ 73 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDE 73 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccC
Confidence 578999999999987666664 466777777665331 11 2223333333433322 110101 235
Q ss_pred CCHHHHHHHHHHhcC
Q 018164 324 SSSKNIAAFIKEQLK 338 (360)
Q Consensus 324 ~~~~~l~~~i~~~~~ 338 (360)
.+.+++.++|.++-.
T Consensus 74 ls~~e~~~~l~~~p~ 88 (105)
T cd02977 74 LSDEEALELMAEHPK 88 (105)
T ss_pred CCHHHHHHHHHhCcC
Confidence 678888888887654
No 355
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=85.38 E-value=2.3 Score=33.57 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=33.3
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCC
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIA 159 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~ 159 (360)
++++++.|++.| + |..-.+.++++.++|++ .+.++.|.++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 567888999999 7 99999999999999974 4777777653
No 356
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=85.20 E-value=2.3 Score=33.90 Aligned_cols=93 Identities=6% Similarity=-0.014 Sum_probs=58.4
Q ss_pred HHHHHHHhhccCCceeecCc--ccccccccCCCceEEEEEEec-cchHHHHH-HH--HHHHHhhcCceEEEEEeCCCccc
Q 018164 90 DKILQFLNYNKFPLVTKLTD--INSASVHSSPIKLQVYVFAKA-DDLKSLLE-PL--EDIARNFKGKIMFTAVDIADEDL 163 (360)
Q Consensus 90 ~~l~~fi~~~~~p~v~~l~~--~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~-~~--~~la~~~~~~i~f~~vd~~~~~~ 163 (360)
.+-.-++..|....|....- +.+...-..+++.+|.++.+| .-|..+.. .| .++|.-++..+.-+.||.++.+
T Consensus 6 ~~~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~P- 84 (163)
T PF03190_consen 6 NSKSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERP- 84 (163)
T ss_dssp G---HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-H-
T ss_pred cCCCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCc-
Confidence 34567888888888865544 556666677888899999999 77998775 44 4688888888888999999876
Q ss_pred chhHHhhc--------CCCCCCCceEEEEeCC
Q 018164 164 AKPFLTLF--------GLEESKNTVVTAFDNK 187 (360)
Q Consensus 164 ~~~l~~~~--------gi~~~~p~~~~~~~~~ 187 (360)
++-..| |..++ |.. ++.+..
T Consensus 85 --did~~y~~~~~~~~~~gGw-Pl~-vfltPd 112 (163)
T PF03190_consen 85 --DIDKIYMNAVQAMSGSGGW-PLT-VFLTPD 112 (163)
T ss_dssp --HHHHHHHHHHHHHHS---S-SEE-EEE-TT
T ss_pred --cHHHHHHHHHHHhcCCCCC-Cce-EEECCC
Confidence 776655 56677 777 455554
No 357
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=83.08 E-value=3.7 Score=28.43 Aligned_cols=77 Identities=16% Similarity=0.247 Sum_probs=48.1
Q ss_pred EEEEEec--cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCC-cccccCCCCCCH
Q 018164 124 VYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA-ISKFLLESDLTP 200 (360)
Q Consensus 124 v~f~~~~--~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~-~~~y~~~~~~~~ 200 (360)
+.+|... .=|+.+...++.++.... +.+-.+|..+.+ .+...||.. -|++.+-+... .......+.++.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~---~l~~~Y~~~---IPVl~~~~~~~~~~~~~~~~~~d~ 73 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDP---ELFEKYGYR---IPVLHIDGIRQFKEQEELKWRFDE 73 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTH---HHHHHSCTS---TSEEEETT-GGGCTSEEEESSB-H
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCH---HHHHHhcCC---CCEEEEcCcccccccceeCCCCCH
Confidence 3455554 679988888887665554 888889988765 788899963 44433322111 002223467899
Q ss_pred HHHHHHHH
Q 018164 201 SNIEEFCS 208 (360)
Q Consensus 201 ~~i~~fi~ 208 (360)
+.|.+|++
T Consensus 74 ~~L~~~L~ 81 (81)
T PF05768_consen 74 EQLRAWLE 81 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999875
No 358
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=82.42 E-value=2.6 Score=33.11 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=33.9
Q ss_pred EEEEeCC------CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----CC-CC----CCCCcEEEE
Q 018164 252 LLEVYTP------WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----PK-LQ----VEEYPTLLF 308 (360)
Q Consensus 252 ~v~f~~~------~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----~~-~~----i~~~Pti~~ 308 (360)
+|+|+++ +|++|..++..|+.+ ++.+-.+|++.+ +. .. .+ -..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4566677 899999998888765 577888898776 22 11 12 257888754
No 359
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.72 E-value=7.3 Score=29.07 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=44.8
Q ss_pred CCceEEEEEE--------ec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC----CCceEEE
Q 018164 119 PIKLQVYVFA--------KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES----KNTVVTA 183 (360)
Q Consensus 119 ~~~~~v~f~~--------~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~----~p~~~~~ 183 (360)
+...+++|+. +| ++|-+..+.+.+.-+....++.|+.++..+.+..+.....|..+.. -||++.+
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw 102 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRW 102 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEE
Confidence 3345555654 36 7899999999999888888999999998877655555444444322 1666444
No 360
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.33 E-value=3.7 Score=29.49 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=36.5
Q ss_pred CccEEEEE----eCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----CC-CCCCCcEEEEEeCCCc
Q 018164 248 HKDVLLEV----YTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KL-QVEEYPTLLFYPAGDK 314 (360)
Q Consensus 248 ~~~~~v~f----~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----~~-~i~~~Pti~~~~~g~~ 314 (360)
+.++++++ -.|.||.+.+...++..+. -+.|+.+|+-.+ ++. ++ +..++|.+ |-+|+-
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g-------~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQL--yi~GEf 81 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACG-------VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQL--YVNGEF 81 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcC-------CcceeEEeeccCHHHHhccHhhcCCCCCcee--eECCEE
Confidence 44555554 3678999988776666552 167889999888 553 22 44455555 546644
No 361
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=81.21 E-value=2.2 Score=31.29 Aligned_cols=35 Identities=14% Similarity=0.014 Sum_probs=25.4
Q ss_pred EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q 018164 253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH 295 (360)
Q Consensus 253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~ 295 (360)
.+|+.|+|+.|++....+++- ++.+-.+|...+..
T Consensus 2 ~iy~~~~C~~crka~~~L~~~--------~i~~~~~di~~~p~ 36 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR--------GVAYTFHDYRKDGL 36 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccCCC
Confidence 578999999999977666554 45666677766633
No 362
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=81.10 E-value=3.8 Score=27.59 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=30.5
Q ss_pred EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhh-----cCCCCCCCce
Q 018164 123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTL-----FGLEESKNTV 180 (360)
Q Consensus 123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~-----~gi~~~~p~~ 180 (360)
+.+|+.+| +.|.++.+.|.+++. .+-.+|.+..+ ..... +|+... |++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~------~~~~idi~~~~---~~~~~~~~~~~~~~~v-P~i 55 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA------AYEWVDIEEDE---GAADRVVSVNNGNMTV-PTV 55 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC------ceEEEeCcCCH---hHHHHHHHHhCCCcee-CEE
Confidence 46788888 999999988876643 34456666443 22222 266555 775
No 363
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=80.97 E-value=2.2 Score=32.74 Aligned_cols=34 Identities=12% Similarity=0.337 Sum_probs=24.9
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 293 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~ 293 (360)
+.+|+.|+|+.|++....+++- ++.+-.+|+..+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccCC
Confidence 5678999999999977666554 456666776655
No 364
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=80.47 E-value=20 Score=29.47 Aligned_cols=93 Identities=9% Similarity=-0.035 Sum_probs=55.5
Q ss_pred CCceEEEEE-Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcc----------------------cchhHHhhcCC
Q 018164 119 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED----------------------LAKPFLTLFGL 173 (360)
Q Consensus 119 ~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~----------------------~~~~l~~~~gi 173 (360)
+++.++.|| ..| ..|..-.+.|.++.++|.. .+.++.|..+... ....+++.||+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 345666667 567 8899999999999999863 2444444433210 01366788887
Q ss_pred CC---C--CCceEEEEeCCCcccccC----CCCCCHHHHHHHHHHHhc
Q 018164 174 EE---S--KNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRLLH 212 (360)
Q Consensus 174 ~~---~--~p~~~~~~~~~~~~~y~~----~~~~~~~~i~~fi~~~~~ 212 (360)
.. . .|.. .+.+.++.-.|.+ ....+.+.+.+.+.....
T Consensus 111 ~~~~~g~~~r~t-fIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~ 157 (187)
T PRK10382 111 MREDEGLADRAT-FVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY 157 (187)
T ss_pred CcccCCceeeEE-EEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhh
Confidence 31 1 1444 4555444333332 334689999999887653
No 365
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=80.17 E-value=5.4 Score=30.92 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=33.0
Q ss_pred CceEEEEE-Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCc
Q 018164 120 IKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE 161 (360)
Q Consensus 120 ~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~ 161 (360)
.+.+++|| ..| +.|....+.+.++.+++.. .+.++.|..+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 45666665 678 9999999999999999963 488888877654
No 366
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=80.14 E-value=2.5 Score=31.35 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=45.9
Q ss_pred EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC--CC----CCCCCcEEEEEeCCCcc-CceEecC---
Q 018164 253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP--KL----QVEEYPTLLFYPAGDKA-NPIKVSA--- 322 (360)
Q Consensus 253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~--~~----~i~~~Pti~~~~~g~~~-~~~~~~g--- 322 (360)
.+|+.++|+.|++....+++- ++.+-.+|+..+... ++ +..+.|.--+++..+.. +.....+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence 468899999999987666663 466777787766332 12 33455655555444332 1111111
Q ss_pred CCCHHHHHHHHHHhcC
Q 018164 323 RSSSKNIAAFIKEQLK 338 (360)
Q Consensus 323 ~~~~~~l~~~i~~~~~ 338 (360)
..+.+++++.|.++-.
T Consensus 74 ~~s~~e~~~~l~~~p~ 89 (111)
T cd03036 74 SLSEEEALELLSSDGM 89 (111)
T ss_pred cCCHHHHHHHHHhCcC
Confidence 2355777777776643
No 367
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=79.62 E-value=5.1 Score=31.18 Aligned_cols=54 Identities=13% Similarity=0.072 Sum_probs=36.9
Q ss_pred CceEEEEE-Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCC
Q 018164 120 IKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGL 173 (360)
Q Consensus 120 ~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi 173 (360)
++.++.|| ..| +.|....+.+.++.+++.+ .+.++.|..+.....+.+++.+++
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 85 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGL 85 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCC
Confidence 45666676 678 8999999999999999974 478877776543211234444443
No 368
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=79.49 E-value=6.2 Score=27.44 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=48.0
Q ss_pred EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCccc-chhHHhhcCC--CCCCCceEEEEeCCCcccccCCCCC
Q 018164 123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGL--EESKNTVVTAFDNKAISKFLLESDL 198 (360)
Q Consensus 123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~-~~~l~~~~gi--~~~~p~~~~~~~~~~~~~y~~~~~~ 198 (360)
+.+|..++ +.|.+....|++++.++. .+.+..+|...... ...+....|- ... |+++ .++. .. |
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~v-P~if--i~g~---~i---g-- 70 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETV-PQIF--VDQK---HI---G-- 70 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcC-CEEE--ECCE---EE---c--
Confidence 45667777 999999999999998764 48888888774310 1134444443 444 7763 3322 22 2
Q ss_pred CHHHHHHHHHHHh
Q 018164 199 TPSNIEEFCSRLL 211 (360)
Q Consensus 199 ~~~~i~~fi~~~~ 211 (360)
..+.|.++.++.+
T Consensus 71 g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 GCTDFEAYVKENL 83 (85)
T ss_pred CHHHHHHHHHHhc
Confidence 4566777777654
No 369
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=79.20 E-value=4.4 Score=31.22 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=33.4
Q ss_pred CCCceEEEEEEec-cc-hHHHHHHHHHHHHhhcC----ceEEEEEeCC
Q 018164 118 SPIKLQVYVFAKA-DD-LKSLLEPLEDIARNFKG----KIMFTAVDIA 159 (360)
Q Consensus 118 ~~~~~~v~f~~~~-~~-~~~~~~~~~~la~~~~~----~i~f~~vd~~ 159 (360)
.+++.++.|+..| .. |....+.++++..++.. ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 3567788889999 76 99999999999999975 3777777654
No 370
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=78.95 E-value=9.8 Score=32.29 Aligned_cols=87 Identities=13% Similarity=0.227 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccc--cccCccEEEEEeCCCChhhHHHHHHHHHHHH
Q 018164 198 LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLV--LNSHKDVLLEVYTPWCVTCETTSKQIEKLAK 275 (360)
Q Consensus 198 ~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~--~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~ 275 (360)
+|.+.+..-.......-.+......++| +.+|..+++.+.-.+. ...++|.+|.|-|=-|++-..-...++++++
T Consensus 53 fT~~~lk~vw~~~~ldl~~~a~~G~~AP---ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~ 129 (237)
T PF00837_consen 53 FTLESLKAVWKVMWLDLFKEAKLGGPAP---NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVE 129 (237)
T ss_pred hhHHHHHHHHHHHHHHcccceeCCCCCC---CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHH
Confidence 4555554444443332222223334444 3678888887633322 3668999999999889998888899999999
Q ss_pred HhcCCCCEEEEE
Q 018164 276 HFKGLDNLVIAK 287 (360)
Q Consensus 276 ~~~~~~~~~~~~ 287 (360)
.+.+..++.++.
T Consensus 130 ~f~d~adFl~VY 141 (237)
T PF00837_consen 130 DFSDVADFLIVY 141 (237)
T ss_pred Hhhhhhheehhh
Confidence 998733444443
No 371
>PHA03075 glutaredoxin-like protein; Provisional
Probab=78.90 E-value=4.6 Score=29.82 Aligned_cols=29 Identities=28% Similarity=0.641 Sum_probs=24.8
Q ss_pred ccEEEEEeCCCChhhHHHHHHHHHHHHHh
Q 018164 249 KDVLLEVYTPWCVTCETTSKQIEKLAKHF 277 (360)
Q Consensus 249 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~ 277 (360)
+.+++.|--|.|+-|.....++.++..++
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 57899999999999999999887776544
No 372
>PRK12559 transcriptional regulator Spx; Provisional
Probab=78.53 E-value=3.5 Score=31.71 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=24.8
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE 294 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~ 294 (360)
+.+|+.|+|..|++....+++- ++.+-.+|+..+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN--------QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCeEEEEeeCCc
Confidence 5688999999999977655544 4556666666553
No 373
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=77.23 E-value=5.2 Score=32.48 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=26.9
Q ss_pred EEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 018164 254 EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 292 (360)
Q Consensus 254 ~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 292 (360)
+|..|.|+.|-.+.|.|.++...+.+ .+.+-.+-...
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~--~i~~~~i~~~~ 38 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN--KIEFRFIPGGL 38 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T--TEEEEEEE--S
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC--cEEEEEEEccc
Confidence 58899999999999999999999987 56665555443
No 374
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=77.14 E-value=9.1 Score=25.83 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=40.5
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC---CCCCCCCCCCcEEEEEeCCCccCceEecCCCCHHH
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN---EHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKN 328 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~---~~~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~ 328 (360)
+.+|+.+.|+.|.+.+-.+.+. + +.+-.++.+.. ++..-....+|++..=.+|.. .+ -.....
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----g---i~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~--~~----l~eS~~ 67 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----G---IPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDG--QQ----LVDSSV 67 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----C---CceEEEECCchhHHHHHHhCCCccCEEEECCCCCc--cE----EEcHHH
Confidence 3467889999999987555554 2 23333333221 121123456898865322111 11 225678
Q ss_pred HHHHHHHhcC
Q 018164 329 IAAFIKEQLK 338 (360)
Q Consensus 329 l~~~i~~~~~ 338 (360)
|.++|.+.++
T Consensus 68 I~~yL~~~~~ 77 (77)
T cd03040 68 IISTLKTYLG 77 (77)
T ss_pred HHHHHHHHcC
Confidence 8888888764
No 375
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=75.82 E-value=4.2 Score=30.46 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=43.4
Q ss_pred EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--CCC----CCCCCcEEEEE-eCCCccCceE--e-cC
Q 018164 253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKL----QVEEYPTLLFY-PAGDKANPIK--V-SA 322 (360)
Q Consensus 253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~----~i~~~Pti~~~-~~g~~~~~~~--~-~g 322 (360)
.+|+.++|+.|++....+++- ++.+-.+|+..+.. .++ ...+...--++ ++|...+... . ..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~~~~~~~ 73 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALNTSNTFL 73 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCCchhhcc
Confidence 468999999999988777663 46677778766533 112 22222111233 3332221111 1 12
Q ss_pred CCCHHHHHHHHHHhcC
Q 018164 323 RSSSKNIAAFIKEQLK 338 (360)
Q Consensus 323 ~~~~~~l~~~i~~~~~ 338 (360)
..+.++++++|.++-.
T Consensus 74 ~ls~~e~~~~i~~~p~ 89 (117)
T TIGR01617 74 DLSDKEALELLAEDPA 89 (117)
T ss_pred cCCHHHHHHHHHhCcc
Confidence 4566778888877643
No 376
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=75.53 E-value=4.9 Score=30.01 Aligned_cols=79 Identities=14% Similarity=0.218 Sum_probs=43.8
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC--CC----CCCCCcEEEEEeCCCcc-CceEec-CC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP--KL----QVEEYPTLLFYPAGDKA-NPIKVS-AR 323 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~--~~----~i~~~Pti~~~~~g~~~-~~~~~~-g~ 323 (360)
+.+|+.++|+.|++....+++. ++.+-.+|+..+... ++ ...+.|.--+++..+.. +..... ..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~~~ 73 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH--------QIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDIDE 73 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCccc
Confidence 4578899999999987776664 456666777665331 11 22223433344443332 111111 24
Q ss_pred CCHHHHHHHHHHhcC
Q 018164 324 SSSKNIAAFIKEQLK 338 (360)
Q Consensus 324 ~~~~~l~~~i~~~~~ 338 (360)
.+.+++++.|.++-.
T Consensus 74 ls~~e~i~~l~~~p~ 88 (115)
T cd03032 74 LSLSELIRLISEHPS 88 (115)
T ss_pred CCHHHHHHHHHhChh
Confidence 566777777776543
No 377
>PRK15000 peroxidase; Provisional
Probab=71.88 E-value=38 Score=28.14 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=28.6
Q ss_pred CCceEEEEEEe-c-cchHHHHHHHHHHHHhhcC-ceEEEEEeCC
Q 018164 119 PIKLQVYVFAK-A-DDLKSLLEPLEDIARNFKG-KIMFTAVDIA 159 (360)
Q Consensus 119 ~~~~~v~f~~~-~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~ 159 (360)
++..++.||.. | ..|..-.+.|.+.+++|+. .+.++.+.++
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D 77 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD 77 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 44555666664 5 8899999999999999974 2555555444
No 378
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=71.47 E-value=55 Score=26.77 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=32.6
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA 159 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~ 159 (360)
+++.+|.++++| +.|.+ .+.|.++.++|+++ +.++.+.|.
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 567888899999 77765 67999999999853 888888885
No 379
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=71.35 E-value=7.6 Score=29.87 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=25.4
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH 295 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~ 295 (360)
+.+|+.|+|+.|++....+++- ++.+-.+|...+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------~i~~~~~d~~~~~~ 37 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH--------QLSYKEQNLGKEPL 37 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEECCCCCC
Confidence 4578899999999976555443 46677777766643
No 380
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=71.30 E-value=8.1 Score=29.57 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=35.0
Q ss_pred eEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhc---CCCCCCCceEEEEeC
Q 018164 122 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLF---GLEESKNTVVTAFDN 186 (360)
Q Consensus 122 ~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~---gi~~~~p~~~~~~~~ 186 (360)
.++.+..+| ++|....|.+.++|+... .+.+-++.-+.+. .+++.+ |...- |+++ +.+.
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~---el~~~~lt~g~~~I-P~~I-~~d~ 106 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENK---ELMDQYLTNGGRSI-PTFI-FLDK 106 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHH---HHTTTTTT-SS--S-SEEE-EE-T
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCCh---hHHHHHHhCCCeec-CEEE-EEcC
Confidence 456677788 999999999999999875 3555555444332 555544 33344 7774 5544
No 381
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=70.22 E-value=13 Score=25.20 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=38.9
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--CCCC----CCCCCcEEEEEeCCCccCceEecCCCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--HPKL----QVEEYPTLLFYPAGDKANPIKVSARSS 325 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~~~~----~i~~~Pti~~~~~g~~~~~~~~~g~~~ 325 (360)
+.+++.++|+.|.+.+-.+.+. ++.+-.+++.... .+.+ ....+|+++. .+|.. .. ..
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~--------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~---~l----~e 65 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL--------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGV---QM----FE 65 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc--------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCe---EE----Ec
Confidence 4567788999999877555555 2333334554332 1122 4457898853 22222 12 24
Q ss_pred HHHHHHHHHHh
Q 018164 326 SKNIAAFIKEQ 336 (360)
Q Consensus 326 ~~~l~~~i~~~ 336 (360)
...|.++|.+.
T Consensus 66 s~~I~~yL~~~ 76 (77)
T cd03041 66 SADIVKYLFKT 76 (77)
T ss_pred HHHHHHHHHHh
Confidence 56788887754
No 382
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=70.14 E-value=13 Score=28.49 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=33.4
Q ss_pred CCCceEEEEE-Eec-cchHHHHHHHHHHHHhhc-CceEEEEEeCCCc
Q 018164 118 SPIKLQVYVF-AKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADE 161 (360)
Q Consensus 118 ~~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~-~~i~f~~vd~~~~ 161 (360)
.+++.+|.|+ ..| ..|....+.+.++.++++ ..+.|+.|..+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~ 67 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP 67 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 4556777777 457 889999999999999985 3477887776543
No 383
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=69.95 E-value=19 Score=27.08 Aligned_cols=65 Identities=18% Similarity=0.106 Sum_probs=37.5
Q ss_pred CCCceEEEEEEe-------c-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccch----hHHh--hcCCCCCCCceEEE
Q 018164 118 SPIKLQVYVFAK-------A-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAK----PFLT--LFGLEESKNTVVTA 183 (360)
Q Consensus 118 ~~~~~~v~f~~~-------~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~----~l~~--~~gi~~~~p~~~~~ 183 (360)
.+.+.+++|+.+ | ++|....+.++++-........|+++.....+..+ .+-. .++++.. ||++.+
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~I-PTLi~~ 96 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGI-PTLIRW 96 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SS-SEEEEC
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeec-ceEEEE
Confidence 345666677653 6 78999999999888887777888877654322111 1212 3778787 998644
No 384
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=69.19 E-value=13 Score=29.19 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=37.4
Q ss_pred CCCceEEEEEEec--cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCC
Q 018164 118 SPIKLQVYVFAKA--DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGL 173 (360)
Q Consensus 118 ~~~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi 173 (360)
.+++.+|.|+..| ..|....+.+.++.+++.+ .+.++.|..+...-.+.+++.+++
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~ 87 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELL 87 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 3456777777654 6799988899999999874 377877776644312234455554
No 385
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=68.58 E-value=41 Score=24.10 Aligned_cols=81 Identities=11% Similarity=0.126 Sum_probs=48.5
Q ss_pred HHHHHHHhh--hCCeEEEEEecCCC--CccHHHHHHHHhcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCcc
Q 018164 6 VNEAEEFLK--KYQTFVLGMFKKFE--GSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYT 81 (360)
Q Consensus 6 ~~~~~~~~~--~~~~~vv~ff~~~~--~~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~ 81 (360)
.++++.+.+ .++|.++.|..+.+ .+..+...++|+..+.+++-.....+ ..|++++.+.+....+
T Consensus 7 ~~qL~~~f~~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gI 75 (94)
T cd02974 7 KQQLKAYLERLENPVELVASLDDSEKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGI 75 (94)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccE
Confidence 456666666 36777776665432 24455556788888888875422111 2499999876533446
Q ss_pred ccCCCCChHHHHHHHh
Q 018164 82 GYEETFIMDKILQFLN 97 (360)
Q Consensus 82 ~y~g~~~~~~l~~fi~ 97 (360)
.|.|--.=.++..||.
T Consensus 76 rF~GiP~GhEf~Slil 91 (94)
T cd02974 76 RFAGIPMGHEFTSLVL 91 (94)
T ss_pred EEEecCCchhHHHHHH
Confidence 7766434456666664
No 386
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=64.22 E-value=15 Score=24.37 Aligned_cols=49 Identities=10% Similarity=0.139 Sum_probs=28.7
Q ss_pred EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CCCCC-CCCCCcEEE
Q 018164 253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPKL-QVEEYPTLL 307 (360)
Q Consensus 253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~~~~-~i~~~Pti~ 307 (360)
++|+.+||+.|.+.+-.+.+. +. .+.+..+|.... +..+. ....+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-----gl-~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-----GI-TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-----CC-CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 467889999998876555544 22 344555554322 11122 445789885
No 387
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.49 E-value=19 Score=35.46 Aligned_cols=74 Identities=22% Similarity=0.413 Sum_probs=53.6
Q ss_pred ccccccccccCccEEEEEeCCCChhhHHHHHH-H--HHHHHHhcCCCCEEEEEEeCCCC-CCCCC---------CCCCCc
Q 018164 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQ-I--EKLAKHFKGLDNLVIAKIDASAN-EHPKL---------QVEEYP 304 (360)
Q Consensus 238 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~-~--~~la~~~~~~~~~~~~~id~~~~-~~~~~---------~i~~~P 304 (360)
+.|..- ...++|++|-.-..||.-|.-|... | .++|..++. +++-++||-.+- ++..+ +--+.|
T Consensus 34 eAf~~A-~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWP 110 (667)
T COG1331 34 EAFAKA-KEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAITGQGGWP 110 (667)
T ss_pred HHHHHH-HHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhccCCCCc
Confidence 445554 3668999999999999999998654 3 578888987 788888887766 66432 334789
Q ss_pred EEEEE-eCCCc
Q 018164 305 TLLFY-PAGDK 314 (360)
Q Consensus 305 ti~~~-~~g~~ 314 (360)
--+|. |+|+.
T Consensus 111 LtVfLTPd~kP 121 (667)
T COG1331 111 LTVFLTPDGKP 121 (667)
T ss_pred eeEEECCCCce
Confidence 77766 44433
No 388
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=61.79 E-value=11 Score=28.24 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=24.9
Q ss_pred EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164 251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 293 (360)
Q Consensus 251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~ 293 (360)
.+..|+.|.|+.|++....+++- ++.+-.+|....
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~--------gi~~~~~~y~~~ 36 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEH--------GIEYTFIDYLKT 36 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHc--------CCCcEEEEeecC
Confidence 46678999999999988777664 344445555554
No 389
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=60.86 E-value=28 Score=22.14 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=28.4
Q ss_pred EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC---C-CCCCCCCcEEEE
Q 018164 253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH---P-KLQVEEYPTLLF 308 (360)
Q Consensus 253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---~-~~~i~~~Pti~~ 308 (360)
.+|+.++|+.|.+.+-.++... . .+....++...... . ......+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~-----i-~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKG-----L-PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcC-----C-CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 3578899999998776665552 1 23344444332211 1 225567897754
No 390
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=60.11 E-value=1.2e+02 Score=26.51 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=53.4
Q ss_pred CceEEEEE-Eec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCc-----------------c--------cchhHHhhc
Q 018164 120 IKLQVYVF-AKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADE-----------------D--------LAKPFLTLF 171 (360)
Q Consensus 120 ~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~-----------------~--------~~~~l~~~~ 171 (360)
.+.+++|| ..| ..|..-.+.|.++.++|.++ +.++.|.++.. . .+..+++.|
T Consensus 99 k~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakay 178 (261)
T PTZ00137 99 SYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSF 178 (261)
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHc
Confidence 34555555 466 88999999999999988632 43443333321 0 013567788
Q ss_pred CCCC----CCCceEEEEeCCCcccc----cCCCCCCHHHHHHHHHHHh
Q 018164 172 GLEE----SKNTVVTAFDNKAISKF----LLESDLTPSNIEEFCSRLL 211 (360)
Q Consensus 172 gi~~----~~p~~~~~~~~~~~~~y----~~~~~~~~~~i~~fi~~~~ 211 (360)
|+.. ..|..+ +.+.++.-.+ ......+.+++.+-++.+.
T Consensus 179 Gv~~~~g~a~R~tF-IID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 179 GLLRDEGFSHRASV-LVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred CCCCcCCceecEEE-EECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 8752 225554 4444332222 2344578888888887764
No 391
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=58.49 E-value=84 Score=24.30 Aligned_cols=88 Identities=10% Similarity=0.165 Sum_probs=56.2
Q ss_pred cCccEEEEEeCCCCh----hhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--------------------CCCCCCC
Q 018164 247 SHKDVLLEVYTPWCV----TCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--------------------PKLQVEE 302 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~----~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--------------------~~~~i~~ 302 (360)
.-|..+|+.++|.-. .|..+.- =+.+.+-+++ ++.+--.|++..+. ..++.+.
T Consensus 20 e~K~L~VYLH~~~~~~t~~Fc~~~L~-se~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~ 96 (136)
T cd02990 20 DRKLLAIYLHHDESVLSNVFCSQLLC-AESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ 96 (136)
T ss_pred hcceEEEEEcCCCCccHHHHHHHHhc-CHHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence 467899999988754 3444310 1334444554 67777788777531 2346889
Q ss_pred CcEEEEEeCCCc-cC-ceEecCCCCHHHHHHHHHHhc
Q 018164 303 YPTLLFYPAGDK-AN-PIKVSARSSSKNIAAFIKEQL 337 (360)
Q Consensus 303 ~Pti~~~~~g~~-~~-~~~~~g~~~~~~l~~~i~~~~ 337 (360)
+|.+.+...... .. .-+..|..++++++.-|..-+
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 999988843322 11 235679999999998877543
No 392
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=58.31 E-value=21 Score=29.27 Aligned_cols=42 Identities=17% Similarity=0.061 Sum_probs=31.4
Q ss_pred CCceEEEEE-Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCC
Q 018164 119 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIAD 160 (360)
Q Consensus 119 ~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~ 160 (360)
+++.+|.|| ..| ..|..-.+.|.++.++|.+ .+.++.|.++.
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 456667777 678 8999999999999999863 36666666553
No 393
>PRK13189 peroxiredoxin; Provisional
Probab=56.06 E-value=1.1e+02 Score=25.76 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=47.6
Q ss_pred Eec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcc------------------------cchhHHhhcCCCC------
Q 018164 128 AKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADED------------------------LAKPFLTLFGLEE------ 175 (360)
Q Consensus 128 ~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~------------------------~~~~l~~~~gi~~------ 175 (360)
..| ..|..-.+.|.+++++|+.+ +.++.+.++... ....+++.||+..
T Consensus 45 a~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~ 124 (222)
T PRK13189 45 ADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTN 124 (222)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCC
Confidence 455 78999888999999888632 444444333210 0135667777651
Q ss_pred CCCceEEEEeCCCccc----ccCCCCCCHHHHHHHHHHHh
Q 018164 176 SKNTVVTAFDNKAISK----FLLESDLTPSNIEEFCSRLL 211 (360)
Q Consensus 176 ~~p~~~~~~~~~~~~~----y~~~~~~~~~~i~~fi~~~~ 211 (360)
..|.. .+.+.++.-+ +.....++.+.+.+.++.+.
T Consensus 125 ~~r~t-fIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 125 TVRAV-FIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred ceeEE-EEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 11444 3444433222 22334567888888888764
No 394
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=55.60 E-value=34 Score=22.04 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=22.9
Q ss_pred EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc
Q 018164 123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE 161 (360)
Q Consensus 123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~ 161 (360)
+++|..++ +.|..+...|.+.. +.+..+|....
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~ 35 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILED 35 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCC
Confidence 34566667 88999888777654 66667777654
No 395
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=54.48 E-value=17 Score=27.09 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=24.6
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE 294 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~ 294 (360)
+..|+.|.|..|++....+++- ++.+-.+|...+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~--------gi~~~~~d~~~~p 36 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA--------GHEVEVRDLLTEP 36 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEeehhcCC
Confidence 3578899999999876555543 4566667766653
No 396
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=53.78 E-value=39 Score=23.53 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=44.0
Q ss_pred EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc-cchhHHhhcCC--CCCCCceEEEEeCCCcccccCCCCC
Q 018164 123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFGL--EESKNTVVTAFDNKAISKFLLESDL 198 (360)
Q Consensus 123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~-~~~~l~~~~gi--~~~~p~~~~~~~~~~~~~y~~~~~~ 198 (360)
+++|..++ +.|.+....|.++..++.+ +.+..+|..... ....+....|- ... |.+ +.++. .. |
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tV-P~i--fi~g~---~i---g-- 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETV-PQI--FVDEK---HV---G-- 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCc-CeE--EECCE---Ee---c--
Confidence 34555667 9999999999887766543 667777766321 01234455553 333 655 33321 11 2
Q ss_pred CHHHHHHHHHHHh
Q 018164 199 TPSNIEEFCSRLL 211 (360)
Q Consensus 199 ~~~~i~~fi~~~~ 211 (360)
..+.|.+++++..
T Consensus 70 G~~dl~~~~~~~~ 82 (86)
T TIGR02183 70 GCTDFEQLVKENF 82 (86)
T ss_pred CHHHHHHHHHhcc
Confidence 3466777777643
No 397
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=53.36 E-value=93 Score=23.27 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=52.0
Q ss_pred EEEEEEec---cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCccc---------chhHHhhcCCCCCCCceEEEEeCCCc
Q 018164 123 QVYVFAKA---DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDL---------AKPFLTLFGLEESKNTVVTAFDNKAI 189 (360)
Q Consensus 123 ~v~f~~~~---~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~---------~~~l~~~~gi~~~~p~~~~~~~~~~~ 189 (360)
++++|++. ..+++....+......+..+ +.+..+-...... ...+-+.|++.....+++ +..-.++
T Consensus 12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~v-LiGKDG~ 90 (118)
T PF13778_consen 12 LLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVV-LIGKDGG 90 (118)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEE-EEeCCCc
Confidence 46667776 33556666676655556543 5555543333220 026778888885535553 3433345
Q ss_pred ccccCCCCCCHHHHHHHHHHH
Q 018164 190 SKFLLESDLTPSNIEEFCSRL 210 (360)
Q Consensus 190 ~~y~~~~~~~~~~i~~fi~~~ 210 (360)
.+-.+....+.+.|-..|...
T Consensus 91 vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 91 VKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EEEecCCCCCHHHHHHHHhCC
Confidence 566667889999999888764
No 398
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=52.84 E-value=1.4e+02 Score=25.79 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=23.9
Q ss_pred HHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164 167 FLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 207 (360)
Q Consensus 167 l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi 207 (360)
+.+.+|++++ |+++ +.+.+ +......|..+.+.|.+.+
T Consensus 211 l~~~lGv~GT-Paiv-~~d~~-G~~~~v~G~~~~~~L~~~l 248 (251)
T PRK11657 211 LMDDLGANAT-PAIY-YMDKD-GTLQQVVGLPDPAQLAEIM 248 (251)
T ss_pred HHHHcCCCCC-CEEE-EECCC-CCEEEecCCCCHHHHHHHh
Confidence 5667889998 8883 44432 2222235777788777665
No 399
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=52.21 E-value=23 Score=26.28 Aligned_cols=78 Identities=6% Similarity=0.049 Sum_probs=42.0
Q ss_pred EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC--CC----CCCCCcEEEEEeCCCc-cCceEec-CCC
Q 018164 253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP--KL----QVEEYPTLLFYPAGDK-ANPIKVS-ARS 324 (360)
Q Consensus 253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~--~~----~i~~~Pti~~~~~g~~-~~~~~~~-g~~ 324 (360)
.+|+.|.|..|++....+++- ++.+-.+|..+..+. ++ ...+.+.--++...+. .+..... ...
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~~~~l 73 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA--------GIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLADPEL 73 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCCccCC
Confidence 578899999999976555544 456667787766442 11 2222222223322222 1100011 256
Q ss_pred CHHHHHHHHHHhcC
Q 018164 325 SSKNIAAFIKEQLK 338 (360)
Q Consensus 325 ~~~~l~~~i~~~~~ 338 (360)
+.+++++.|.++-.
T Consensus 74 s~~e~i~ll~~~P~ 87 (112)
T cd03034 74 SDEELIDAMAAHPI 87 (112)
T ss_pred CHHHHHHHHHhCcC
Confidence 67778888877643
No 400
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=52.15 E-value=41 Score=22.72 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=32.6
Q ss_pred EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc--cchhHHhhcCCCCCCCce
Q 018164 123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED--LAKPFLTLFGLEESKNTV 180 (360)
Q Consensus 123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~--~~~~l~~~~gi~~~~p~~ 180 (360)
+++|..++ +.|..+...|.++... ..+..++..... ....+.+..|.... |.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g~~~~-P~v 57 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTGQRTV-PNV 57 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhCCCCC-CeE
Confidence 45677777 9999999888876653 455666655331 01123345566666 776
No 401
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.03 E-value=16 Score=24.77 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=17.1
Q ss_pred EEEeCCCChhhHHHHHHHHHH
Q 018164 253 LEVYTPWCVTCETTSKQIEKL 273 (360)
Q Consensus 253 v~f~~~~c~~c~~~~~~~~~l 273 (360)
++|+|.-|+.|..+...++.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl 25 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL 25 (85)
T ss_pred eeeccccCcchHHHHHHHHHc
Confidence 679999999998877666665
No 402
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=51.99 E-value=69 Score=21.34 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=41.7
Q ss_pred EEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CCCC-CCCCCCcEEEEEeCCCccCceEecCCCCHHHHH
Q 018164 254 EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPK-LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIA 330 (360)
Q Consensus 254 ~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~~~-~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~ 330 (360)
+++.++|..|.+++-.++.. +. .+.+..++.... .+.. -....+|++. .+|.. . .+...|.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~-----~i-~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~----l----~dS~~I~ 64 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK-----GI-PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEV----L----TDSAAII 64 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH-----TE-EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEE----E----ESHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHc-----CC-eEEEeccCcccchhHHHhhcccccceEEE--ECCEE----E----eCHHHHH
Confidence 36788999999987444443 31 344444453332 1111 1445789996 44532 1 2677899
Q ss_pred HHHHHhcCC
Q 018164 331 AFIKEQLKE 339 (360)
Q Consensus 331 ~~i~~~~~~ 339 (360)
++|.+..+.
T Consensus 65 ~yL~~~~~~ 73 (75)
T PF13417_consen 65 EYLEERYPG 73 (75)
T ss_dssp HHHHHHSTS
T ss_pred HHHHHHcCC
Confidence 999887654
No 403
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=51.81 E-value=31 Score=27.20 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=28.9
Q ss_pred cEEEEEeCCCChhhHHH-HHHHHHHHHHhcCCCCE-EEEEEeCCC
Q 018164 250 DVLLEVYTPWCVTCETT-SKQIEKLAKHFKGLDNL-VIAKIDASA 292 (360)
Q Consensus 250 ~~~v~f~~~~c~~c~~~-~~~~~~la~~~~~~~~~-~~~~id~~~ 292 (360)
.+++.|-+.||+.|... .+.|.+....|... ++ .+.-+-.+.
T Consensus 32 vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-g~~~V~~iS~D~ 75 (155)
T cd03013 32 VVIFGVPGAFTPTCSAQHLPGYVENADELKAK-GVDEVICVSVND 75 (155)
T ss_pred EEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-CCCEEEEEECCC
Confidence 44444458899999998 89999999888653 33 355454443
No 404
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=51.64 E-value=57 Score=22.97 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=42.2
Q ss_pred EEEEec-cchHHHHHHHHHHHHh-hcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEe
Q 018164 125 YVFAKA-DDLKSLLEPLEDIARN-FKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD 185 (360)
Q Consensus 125 ~f~~~~-~~~~~~~~~~~~la~~-~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~ 185 (360)
++++.. ..+.+....++++.+. +.+...+-.+|..+.+ .+++.++|-.. |+++...+
T Consensus 8 Lyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP---~lAE~~~IvAT-PtLIK~~P 66 (87)
T TIGR02654 8 LYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNP---QLAEEDKILAT-PTLSKILP 66 (87)
T ss_pred EEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCH---hHHhHCCEEEe-cHHhhcCC
Confidence 344544 6677777777777664 4567888889999887 89999999988 99864443
No 405
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=50.12 E-value=60 Score=22.01 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=32.3
Q ss_pred eEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164 122 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180 (360)
Q Consensus 122 ~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~ 180 (360)
.+.+|..++ +.|.+....|.+. .+.+-.+|.+.......+....|.... |.+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~v-P~i 61 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTV-PQV 61 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCc-CeE
Confidence 456666677 9999988887643 266666776644322244444566665 766
No 406
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=49.99 E-value=52 Score=25.67 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=30.6
Q ss_pred eEEEEEEec-cchHHHHHHHHHHHHhh--cCceEEEEEeCCC
Q 018164 122 LQVYVFAKA-DDLKSLLEPLEDIARNF--KGKIMFTAVDIAD 160 (360)
Q Consensus 122 ~~v~f~~~~-~~~~~~~~~~~~la~~~--~~~i~f~~vd~~~ 160 (360)
.++.|++.. ++|.++.+.+.++-+++ .+++.|...+...
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred EEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 344555555 99999999999999999 7899999987653
No 407
>PRK13190 putative peroxiredoxin; Provisional
Probab=49.31 E-value=77 Score=26.28 Aligned_cols=97 Identities=13% Similarity=-0.033 Sum_probs=48.7
Q ss_pred hCCeEEEEEecCCCCccHHHHH-HHHhcCC-CceEEE--eccHHHHHHcCCCCC---CCCCEEEEEecCCCCcc--ccC-
Q 018164 15 KYQTFVLGMFKKFEGSDYEEFV-KTAAADN-EIQFVE--TSNFEVAKVLYPDIK---STDHFLGIVKSEPDRYT--GYE- 84 (360)
Q Consensus 15 ~~~~~vv~ff~~~~~~~~~~f~-~~a~~~~-~~~F~~--~~~~~~~~~~~~~~~---~~~p~i~~~~~~~~~~~--~y~- 84 (360)
...+.|||+..+.. .....+. ++.+..+ .+.|-+ -.+..+++.||+... ...|++.++-+.+.... .|.
T Consensus 59 ~~~~~vi~vS~D~~-~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~ 137 (202)
T PRK13190 59 KLGVELVGLSVDSI-YSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPA 137 (202)
T ss_pred HCCCEEEEEeCCCH-HHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCC
Confidence 34566666653321 2222332 2222222 344444 446678889987311 12588888876542221 222
Q ss_pred -CCCChHHHHHHHhhccC-CceeecCcccc
Q 018164 85 -ETFIMDKILQFLNYNKF-PLVTKLTDINS 112 (360)
Q Consensus 85 -g~~~~~~l~~fi~~~~~-p~v~~l~~~~~ 112 (360)
+..+.++|.+.|..... .-....++.|.
T Consensus 138 ~~gr~~~ellr~l~~l~~~~~~~~~~p~~w 167 (202)
T PRK13190 138 ETGRNIDEIIRITKALQVNWKRKVATPANW 167 (202)
T ss_pred CCCCCHHHHHHHHHHhhhHHhcCCCcCCCC
Confidence 34588889888875332 11134455444
No 408
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=49.15 E-value=27 Score=26.00 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=25.6
Q ss_pred EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q 018164 253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH 295 (360)
Q Consensus 253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~ 295 (360)
.+|+.|.|..|++....+++- ++.+-.+|...+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~p~ 36 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK--------GIEPEVVKYLKNPP 36 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEeccCCCc
Confidence 478899999999977666653 45666678777644
No 409
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=49.00 E-value=42 Score=22.01 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=36.1
Q ss_pred EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CCCCC-CCCCCcEEEEEeCCCccCceEecCCCCHHHH
Q 018164 253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPKL-QVEEYPTLLFYPAGDKANPIKVSARSSSKNI 329 (360)
Q Consensus 253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~~~~-~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l 329 (360)
.+|+.++|..|.+.+-.++..+- .+....+|.... +.... ....+|++. .+| .. -.....|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi------~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~-~~-------l~es~aI 65 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV------SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRD-LV-------LYESRII 65 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC------ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECC-EE-------EEcHHHH
Confidence 46788999999998755544422 233334443322 11122 445788774 233 21 1245677
Q ss_pred HHHHHH
Q 018164 330 AAFIKE 335 (360)
Q Consensus 330 ~~~i~~ 335 (360)
.++|.+
T Consensus 66 ~~yL~~ 71 (73)
T cd03059 66 MEYLDE 71 (73)
T ss_pred HHHHHh
Confidence 777764
No 410
>PRK13191 putative peroxiredoxin; Provisional
Probab=48.96 E-value=1.4e+02 Score=25.05 Aligned_cols=83 Identities=11% Similarity=0.078 Sum_probs=48.1
Q ss_pred Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCccc------------------------chhHHhhcCCCC------
Q 018164 128 AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDL------------------------AKPFLTLFGLEE------ 175 (360)
Q Consensus 128 ~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~------------------------~~~l~~~~gi~~------ 175 (360)
.+| ..|..-.+.|.+++.+|+. .+.++.+.++.... ...+++.||+..
T Consensus 43 a~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~ 122 (215)
T PRK13191 43 GDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTA 122 (215)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCc
Confidence 345 8899999999999999963 25555554442210 124556666531
Q ss_pred CCCceEEEEeCCCcccc----cCCCCCCHHHHHHHHHHHh
Q 018164 176 SKNTVVTAFDNKAISKF----LLESDLTPSNIEEFCSRLL 211 (360)
Q Consensus 176 ~~p~~~~~~~~~~~~~y----~~~~~~~~~~i~~fi~~~~ 211 (360)
..|.. .+.+.++.-++ .....++.+++.+.++...
T Consensus 123 ~~r~t-fIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 123 TVRAV-FIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred eeEEE-EEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 11334 34554432222 2233478899999888754
No 411
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=48.69 E-value=83 Score=21.29 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHHHHhh-cCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEE
Q 018164 131 DDLKSLLEPLEDIARNF-KGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTA 183 (360)
Q Consensus 131 ~~~~~~~~~~~~la~~~-~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~ 183 (360)
....+....++++.+.+ .+...+-.+|..+.+ .+++.++|-.. |+++..
T Consensus 13 p~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P---~lAe~~~ivAt-PtLvk~ 62 (72)
T cd02978 13 PKSERALQNLKRILEELLGGPYELEVIDVLKQP---QLAEEDKIVAT-PTLVKV 62 (72)
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEEEcccCH---hHHhhCCEEEe-chhhhc
Confidence 55667777777777766 467888899999887 89999999888 888533
No 412
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=47.97 E-value=1e+02 Score=26.62 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=23.9
Q ss_pred cccCccEEEEEeCCCChhhHHHHHHHHHHHHHhc
Q 018164 245 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFK 278 (360)
Q Consensus 245 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~ 278 (360)
..+.|+.+++.-+.||+.|...+=.+-.+-.+|.
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcC
Confidence 3568899999999999999886533333334443
No 413
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=47.32 E-value=57 Score=26.33 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=34.8
Q ss_pred cCccEEEEEeCCCC-hhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCC-CCC
Q 018164 247 SHKDVLLEVYTPWC-VTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN-EHP 296 (360)
Q Consensus 247 ~~~~~~v~f~~~~c-~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~-~~~ 296 (360)
..+.++|.|.-..| ..|-.+...+.++.+.+... .++.+..|-++-. |.+
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp 103 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTP 103 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-H
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCH
Confidence 47888999988888 46988888888887777543 3677777766654 543
No 414
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.20 E-value=2.3e+02 Score=26.00 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=51.7
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CCCCCCCCCCcEEEEEeCCCccCceEecCCCCHHHH
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNI 329 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l 329 (360)
+=-|++-.|..|-.+...+.-.+ .++. ++.-..||.... ++..-+|.++||+++ +|+. --+|.++.++|
T Consensus 120 FETy~SltC~nCPDVVQALN~ms-vlNp--~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~----fg~GRmtleei 190 (520)
T COG3634 120 FETYFSLTCHNCPDVVQALNLMS-VLNP--RIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEE----FGQGRMTLEEI 190 (520)
T ss_pred EEEEEEeeccCChHHHHHHHHHH-hcCC--CceeEEecchhhHhHHHhccceecceEEE--cchh----hcccceeHHHH
Confidence 33455667999988776665543 3443 788888887665 445568999999954 6644 34688899888
Q ss_pred HHHHHH
Q 018164 330 AAFIKE 335 (360)
Q Consensus 330 ~~~i~~ 335 (360)
..-|..
T Consensus 191 laki~~ 196 (520)
T COG3634 191 LAKIDT 196 (520)
T ss_pred HHHhcC
Confidence 776653
No 415
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=46.23 E-value=40 Score=28.59 Aligned_cols=45 Identities=11% Similarity=0.277 Sum_probs=36.4
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC--CCEEEEEEeCC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL--DNLVIAKIDAS 291 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~--~~~~~~~id~~ 291 (360)
....++|-+-..+|..|......++.|..+|... ++|.|..|+--
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 3567888888889999999999999999888543 47899888843
No 416
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=44.72 E-value=43 Score=26.70 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=31.7
Q ss_pred CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC
Q 018164 119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA 159 (360)
Q Consensus 119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~ 159 (360)
....++.|+... ++|..+.+.+.++.+++.+++.|..+...
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 344566676666 99999999999999999888888765543
No 417
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=44.40 E-value=49 Score=25.41 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=27.1
Q ss_pred ceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeC
Q 018164 121 KLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDI 158 (360)
Q Consensus 121 ~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~ 158 (360)
..+++|++.. ++|.++.+.++++..++. ++.+...+.
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~ 44 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFKEF 44 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEEeC
Confidence 4556666667 999999999999887774 566665543
No 418
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=43.84 E-value=69 Score=24.56 Aligned_cols=52 Identities=10% Similarity=0.092 Sum_probs=35.5
Q ss_pred EEeCCCCCCCCCCCCCCcEEEEEeCCC---------ccCceEecCCCCHHHHHHHHHHhcC
Q 018164 287 KIDASANEHPKLQVEEYPTLLFYPAGD---------KANPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 287 ~id~~~~~~~~~~i~~~Pti~~~~~g~---------~~~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
.+.++-.-..+|+|+.+|++++.+.+. ........|..+.+.-.+.|.+...
T Consensus 56 ~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~g~ 116 (130)
T TIGR02742 56 GVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQDGD 116 (130)
T ss_pred cEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHhCC
Confidence 344444455789999999999998774 0012345688888887777776543
No 419
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=42.36 E-value=39 Score=27.42 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=29.0
Q ss_pred EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEe
Q 018164 251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID 289 (360)
Q Consensus 251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id 289 (360)
.+.+|+..-|++|....+.+.++.+.+.+. .+.+.-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~-~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDV-EIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTC-EEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-cEEEeccc
Confidence 367899999999999999999999999331 34444343
No 420
>PRK09301 circadian clock protein KaiB; Provisional
Probab=40.89 E-value=1.4e+02 Score=21.77 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=46.5
Q ss_pred EEEEec-cchHHHHHHHHHHHHh-hcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCC
Q 018164 125 YVFAKA-DDLKSLLEPLEDIARN-FKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL 198 (360)
Q Consensus 125 ~f~~~~-~~~~~~~~~~~~la~~-~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~ 198 (360)
+|++.. ....+....++++.+. +.+...+-.||..+.+ .+++.++|-.. |+++...+. ..++. -|++
T Consensus 11 LyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qP---elAE~~~IvAT-PTLIK~~P~-P~rri--iGDl 79 (103)
T PRK09301 11 LYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNP---QLAEEDKILAT-PTLAKILPP-PVRKI--IGDL 79 (103)
T ss_pred EEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCH---hHHhHCCeEEe-cHHhhcCCC-Cccee--eccc
Confidence 444544 6677777777777664 4567888889999887 89999999988 998644433 23333 3654
No 421
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.88 E-value=1.2e+02 Score=25.79 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=29.6
Q ss_pred ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164 249 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 293 (360)
Q Consensus 249 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~ 293 (360)
...++.|....|++|+...+.+.+......+. ++.+..+-....
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~-~~~~~~~~f~~~ 128 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV-RLVLREFPFLDP 128 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCC-ceEEEEeecCCC
Confidence 67889999999999988877777744444332 455554444444
No 422
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=40.13 E-value=25 Score=28.97 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=23.8
Q ss_pred CCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHH
Q 018164 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFI 333 (360)
Q Consensus 297 ~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i 333 (360)
.+++.++|+++ +++|.. +.|..+.+.|.+||
T Consensus 167 ~~gi~gtPtii-~~~G~~-----~~G~~~~~~l~~~L 197 (197)
T cd03020 167 QLGVNGTPTIV-LADGRV-----VPGAPPAAQLEALL 197 (197)
T ss_pred HcCCCcccEEE-ECCCeE-----ecCCCCHHHHHhhC
Confidence 56889999997 766643 56888888888764
No 423
>PRK10853 putative reductase; Provisional
Probab=39.76 E-value=32 Score=25.79 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=25.1
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE 294 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~ 294 (360)
+.+|+.|.|+.|++....+++- ++.+-.+|...+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~d~~k~p 36 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ--------GIDYRFHDYRVDG 36 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc--------CCCcEEeehccCC
Confidence 4578899999999987666653 4556667766653
No 424
>PRK10329 glutaredoxin-like protein; Provisional
Probab=39.59 E-value=1.2e+02 Score=20.73 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=43.4
Q ss_pred EEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHH
Q 018164 124 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSN 202 (360)
Q Consensus 124 v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~ 202 (360)
.+|..++ +.|......|.+ + .|.|-.+|.+..+-....++..|.... |.+ ++ +. ... ..++.+.
T Consensus 4 ~lYt~~~Cp~C~~ak~~L~~-----~-gI~~~~idi~~~~~~~~~~~~~g~~~v-Pvv-~i-~~---~~~---~Gf~~~~ 68 (81)
T PRK10329 4 TIYTRNDCVQCHATKRAMES-----R-GFDFEMINVDRVPEAAETLRAQGFRQL-PVV-IA-GD---LSW---SGFRPDM 68 (81)
T ss_pred EEEeCCCCHhHHHHHHHHHH-----C-CCceEEEECCCCHHHHHHHHHcCCCCc-CEE-EE-CC---EEE---ecCCHHH
Confidence 3444455 889988777753 2 378888888755411122344455444 665 33 22 122 3578899
Q ss_pred HHHHHHHHhc
Q 018164 203 IEEFCSRLLH 212 (360)
Q Consensus 203 i~~fi~~~~~ 212 (360)
|.+.+.+...
T Consensus 69 l~~~~~~~~~ 78 (81)
T PRK10329 69 INRLHPAPHA 78 (81)
T ss_pred HHHHHHhhhh
Confidence 9998877553
No 425
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=39.32 E-value=41 Score=27.35 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=24.3
Q ss_pred EEEEeCCCChhhHHHHHHHHHHHHHhc
Q 018164 252 LLEVYTPWCVTCETTSKQIEKLAKHFK 278 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~la~~~~ 278 (360)
+.+|+.+.|+.|-...+.++++.+.+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567889999999999999999999984
No 426
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.56 E-value=65 Score=27.26 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=31.9
Q ss_pred CCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD 341 (360)
Q Consensus 297 ~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 341 (360)
+.+|+++|++++ .|+ +..+|..+.+-+..-|.+.++...
T Consensus 179 e~gI~gVP~fv~--d~~----~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 179 EMGIRGVPTFVF--DGK----YAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HCCCccCceEEE--cCc----EeecCCCCHHHHHHHHHHHHhccc
Confidence 569999999999 332 367899999999999999887554
No 427
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=38.48 E-value=31 Score=22.64 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=28.6
Q ss_pred EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--C---CCCC-CCCCCcEEEE
Q 018164 253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--E---HPKL-QVEEYPTLLF 308 (360)
Q Consensus 253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~---~~~~-~i~~~Pti~~ 308 (360)
.+|+.++|+.|.+++-.+....- .+....++.... . ..+. ....+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l------~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI------DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC------CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 46788999999998766555421 233444554322 1 1121 3456798864
No 428
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=38.06 E-value=77 Score=23.53 Aligned_cols=44 Identities=5% Similarity=0.116 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEEEEEeC
Q 018164 266 TSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPA 311 (360)
Q Consensus 266 ~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti~~~~~ 311 (360)
+.+.+..+.+........ +.+.++-+...+|+|+.+|++++-+.
T Consensus 37 ~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 37 FKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 344444444444332111 44555566667899999999999877
No 429
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=35.42 E-value=53 Score=24.97 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=24.0
Q ss_pred EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164 251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 293 (360)
Q Consensus 251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~ 293 (360)
.+.+|+.|.|..|++....+++- ++.+-.+|.-..
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~--------gi~~~~~d~~~~ 36 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS--------GHDVEVQDILKE 36 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC--------CCCcEEEeccCC
Confidence 35678899999999987766654 344555565554
No 430
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=34.26 E-value=2.3e+02 Score=26.43 Aligned_cols=88 Identities=10% Similarity=0.119 Sum_probs=56.0
Q ss_pred ccCccEEEEEeCCCChhhHHHH-HHHHH--HHHHhcCCCCEEEEEEeCCCCCCCC----CCCCCCcEEEEEeCCCccCce
Q 018164 246 NSHKDVLLEVYTPWCVTCETTS-KQIEK--LAKHFKGLDNLVIAKIDASANEHPK----LQVEEYPTLLFYPAGDKANPI 318 (360)
Q Consensus 246 ~~~~~~~v~f~~~~c~~c~~~~-~~~~~--la~~~~~~~~~~~~~id~~~~~~~~----~~i~~~Pti~~~~~g~~~~~~ 318 (360)
..++-++|.|.+.......+|. -.|.. .+..+.. .++.++|+....+... |.+..+|+++++...+. ...
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~--~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGt-pLe 92 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK--YFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGT-PLE 92 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc--ceEEEEeccCchhhhhhhhhcccccccceeeecCCCc-eeE
Confidence 3466788888887777777765 23332 2333333 5777777766654433 37778999998854433 123
Q ss_pred EecCCCCHHHHHHHHHHh
Q 018164 319 KVSARSSSKNIAAFIKEQ 336 (360)
Q Consensus 319 ~~~g~~~~~~l~~~i~~~ 336 (360)
...|..++++|..-|.+.
T Consensus 93 vitg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 93 VITGFVTADELASSIEKV 110 (506)
T ss_pred EeeccccHHHHHHHHHHH
Confidence 567888888888766654
No 431
>COG3411 Ferredoxin [Energy production and conversion]
Probab=34.11 E-value=85 Score=20.61 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=24.9
Q ss_pred CcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164 303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 338 (360)
Q Consensus 303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 338 (360)
=|++++|+.|- -| +..+.+...+++++++.
T Consensus 17 gPvl~vYpegv-----WY-~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 17 GPVLVVYPEGV-----WY-TRVDPEDARRIVQSHLL 46 (64)
T ss_pred CCEEEEecCCe-----eE-eccCHHHHHHHHHHHHh
Confidence 49999999982 33 57899999999999986
No 432
>PRK10026 arsenate reductase; Provisional
Probab=33.20 E-value=60 Score=25.26 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=17.5
Q ss_pred EEEEeCCCChhhHHHHHHHHHH
Q 018164 252 LLEVYTPWCVTCETTSKQIEKL 273 (360)
Q Consensus 252 ~v~f~~~~c~~c~~~~~~~~~l 273 (360)
+.+|+.|.|+.|++....+++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5578899999999987766653
No 433
>KOG2983 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.96 E-value=1e+02 Score=26.74 Aligned_cols=65 Identities=12% Similarity=0.209 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhc
Q 018164 199 TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFK 278 (360)
Q Consensus 199 ~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~ 278 (360)
..+.+...|+++...++.+...++. . .|+=.+....+.++|.| .|||+.-..+.-.|++|+..-.
T Consensus 206 ~kd~~k~lI~eff~d~i~~kF~ded-------f-------vfDVYi~k~~kv~lID~-Npf~~~TdsLlftWeEl~si~~ 270 (334)
T KOG2983|consen 206 EKDLLKGLIEEFFKDKILFKFPDED-------F-------VFDVYITKERKVWLIDF-NPFCGSTDSLLFTWEELESING 270 (334)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCC-------e-------eEEEEecCCCcEEEEec-cCccCccccceeeHHHHHhhcC
Confidence 4567888888888776655432221 1 23334444467777776 6999999999999999987654
No 434
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=32.85 E-value=1.4e+02 Score=22.80 Aligned_cols=27 Identities=11% Similarity=-0.168 Sum_probs=23.1
Q ss_pred EEEeccHHHHHHcCCCCCCCCCEEEEEecC
Q 018164 47 FVETSNFEVAKVLYPDIKSTDHFLGIVKSE 76 (360)
Q Consensus 47 F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~ 76 (360)
-+..-|+.+.++|+++ ..|++++.+..
T Consensus 55 ~~v~IdP~lF~~f~I~---~VPa~V~~~~~ 81 (130)
T TIGR02742 55 SGVQIDPQWFKQFDIT---AVPAFVVVKDG 81 (130)
T ss_pred CcEEEChHHHhhcCce---EcCEEEEECCC
Confidence 5667789999999998 89999998864
No 435
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=32.48 E-value=39 Score=22.19 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=14.9
Q ss_pred EEeCCCChhhHHHHHHHHHH
Q 018164 254 EVYTPWCVTCETTSKQIEKL 273 (360)
Q Consensus 254 ~f~~~~c~~c~~~~~~~~~l 273 (360)
.++.++|.+|.+.+-.+...
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~ 22 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK 22 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc
Confidence 56788999999887555544
No 436
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=31.98 E-value=79 Score=23.15 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=38.1
Q ss_pred EeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC--CC----CCCCCcEEEEEeCCCcc-CceE-e-cCCCC
Q 018164 255 VYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP--KL----QVEEYPTLLFYPAGDKA-NPIK-V-SARSS 325 (360)
Q Consensus 255 f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~--~~----~i~~~Pti~~~~~g~~~-~~~~-~-~g~~~ 325 (360)
|+.|.|..|++....+++- ++.+-.+|.....+. ++ ...+.+.--+++..... +... . ....+
T Consensus 1 Y~~~~C~t~rka~~~L~~~--------gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~~~~~~~~s 72 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN--------GIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELGKLKKDDLS 72 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT--------T--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTTHHHCTTSB
T ss_pred CcCCCCHHHHHHHHHHHHc--------CCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhhhhhhhhhh
Confidence 5789999999987777653 567777898886442 11 11111111123332221 1000 0 13577
Q ss_pred HHHHHHHHHHhcC
Q 018164 326 SKNIAAFIKEQLK 338 (360)
Q Consensus 326 ~~~l~~~i~~~~~ 338 (360)
.+++++.|.++-.
T Consensus 73 ~~e~i~~l~~~p~ 85 (110)
T PF03960_consen 73 DEELIELLLENPK 85 (110)
T ss_dssp HHHHHHHHHHSGG
T ss_pred hHHHHHHHHhChh
Confidence 8888888887754
No 437
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=31.95 E-value=1.3e+02 Score=25.22 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=31.0
Q ss_pred cCccEEEEEeCCCCh-hhHHHHHHHHHHHHHhc-CCC-C--EEEEEEeC
Q 018164 247 SHKDVLLEVYTPWCV-TCETTSKQIEKLAKHFK-GLD-N--LVIAKIDA 290 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~-~c~~~~~~~~~la~~~~-~~~-~--~~~~~id~ 290 (360)
..++++|.|--..|+ -|-.....+..+-+++. ... + +.++.+|-
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDP 114 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDP 114 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECC
Confidence 578999999777776 59888888888877776 222 4 45555553
No 438
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=30.82 E-value=76 Score=21.73 Aligned_cols=36 Identities=14% Similarity=0.018 Sum_probs=26.9
Q ss_pred EEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC
Q 018164 124 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA 159 (360)
Q Consensus 124 v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~ 159 (360)
.+|++.. +.|..+.+.++++.....+++.+.+....
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 4566666 88999999998888777777777766543
No 439
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=30.26 E-value=1.2e+02 Score=24.03 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=22.7
Q ss_pred CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCC
Q 018164 248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGL 280 (360)
Q Consensus 248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~ 280 (360)
.+.++++|| ..+++-|-.-.-.|+.....|+..
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~ 63 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL 63 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC
Confidence 558888887 445666766666777777777654
No 440
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=29.52 E-value=1e+02 Score=24.85 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=25.0
Q ss_pred CCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHH
Q 018164 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIK 334 (360)
Q Consensus 297 ~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~ 334 (360)
.+++.++|++++ +|+ ..+.|....+.|.+.|+
T Consensus 162 ~~gv~GvP~~vv--~g~----~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 162 QLGVFGVPTFVV--NGK----YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HTTCSSSSEEEE--TTT----EEEESCSSHHHHHHHH-
T ss_pred HcCCcccCEEEE--CCE----EEEECCCCHHHHHHHhC
Confidence 458999999999 554 36789999988887763
No 441
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=29.20 E-value=41 Score=22.15 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=28.5
Q ss_pred EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--CCCC----CCCCCcEEE
Q 018164 253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--HPKL----QVEEYPTLL 307 (360)
Q Consensus 253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~~~~----~i~~~Pti~ 307 (360)
.+|+.++|+.|.+.+-.+++. +. .+....+|..... .+.+ ....+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-----gi-~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL-----GL-ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc-----CC-CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 468889999998876555554 22 3444455543321 1222 344689995
No 442
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=29.06 E-value=75 Score=27.10 Aligned_cols=39 Identities=13% Similarity=0.237 Sum_probs=28.7
Q ss_pred hhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164 165 KPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 210 (360)
Q Consensus 165 ~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~ 210 (360)
..+++.+||+++ |+++ +.++ ..+ .|..+.+.|.+++...
T Consensus 192 ~~la~~lgi~gT-Ptiv-~~~G---~~~--~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 192 YALGVQFGVQGT-PAIV-LSNG---TLV--PGYQGPKEMKAFLDEH 230 (232)
T ss_pred HHHHHHcCCccc-cEEE-EcCC---eEe--eCCCCHHHHHHHHHHc
Confidence 467889999999 9884 3232 233 6778999999998764
No 443
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=29.02 E-value=1.5e+02 Score=23.54 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=34.8
Q ss_pred CceEEEEEEec--cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHHhhcCCC
Q 018164 120 IKLQVYVFAKA--DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGLE 174 (360)
Q Consensus 120 ~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~~~gi~ 174 (360)
.+++++||-.. +.|..-...|++...+|+.. ..++-|-.+...-.+++++.+|++
T Consensus 31 k~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 31 KPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred CcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 34555555433 77999999999999999852 333333333222235788888885
No 444
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=28.21 E-value=1.3e+02 Score=24.06 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=36.2
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~ 291 (360)
+++-+.+.++++.++.|.-+...++.+|+.|.+ .++.+-.+++.
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~-~~v~i~~~~~~ 169 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFE-LDVEIEHVECM 169 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTE-EEEEEEEEECC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCC-CCeEEEEeccc
Confidence 456778889999999999999999999999976 25777666664
No 445
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=27.84 E-value=4.9e+02 Score=24.02 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=101.9
Q ss_pred HHHHHHhh--hCCeEEEEEecCCCC--ccHHHHHHHHhcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCccc
Q 018164 7 NEAEEFLK--KYQTFVLGMFKKFEG--SDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTG 82 (360)
Q Consensus 7 ~~~~~~~~--~~~~~vv~ff~~~~~--~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~ 82 (360)
.||..+++ .+++.++.-..+.+. +..+...++|.+.+.+++-...+. ...|+..+-|++...-..
T Consensus 8 aQL~~yl~~l~~~i~l~asldds~~s~~~~~ll~eia~~S~kis~~~~~~~-----------~RkpSF~i~r~g~~~gv~ 76 (520)
T COG3634 8 AQLKAYLELLEQPIELVASLDDSEKSKEIKELLDEIASLSDKISLEEDSDL-----------VRKPSFSINRPGEDQGVR 76 (520)
T ss_pred HHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHHHhhccceeeeecCcc-----------ccCCceeecCCCcccceE
Confidence 56777776 466666655544332 345566778877777766443211 135999999988766677
Q ss_pred cCCCCChHHH----HHHHhhccCCceeecCcccccccccCCCceEEE-EEEec-cchHHHHHHHHHHHHhhcCceEEEEE
Q 018164 83 YEETFIMDKI----LQFLNYNKFPLVTKLTDINSASVHSSPIKLQVY-VFAKA-DDLKSLLEPLEDIARNFKGKIMFTAV 156 (360)
Q Consensus 83 y~g~~~~~~l----~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~-f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~v 156 (360)
|-|----.++ ...++-.-.|+= ...+-.+.+-.-..+..+- +|.-. ..|....+.+.-++--- .+|.-..+
T Consensus 77 FAglPlGHEftSlVLaLlqv~G~ppk--~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlN-p~I~H~~I 153 (520)
T COG3634 77 FAGLPLGHEFTSLVLALLQVGGHPPK--EDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLN-PRIKHTAI 153 (520)
T ss_pred EecCcccchHHHHHHHHHHhcCCCCc--hhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcC-CCceeEEe
Confidence 7652222233 333444444432 2222233332222233232 23333 78998888887666544 45999999
Q ss_pred eCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164 157 DIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR 209 (360)
Q Consensus 157 d~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~ 209 (360)
|..-+. +-.+.-+|... |+++ .++. .|- +|.++.+.|..-+..
T Consensus 154 dGa~Fq---~Evear~IMaV-Ptvf--lnGe---~fg-~GRmtleeilaki~~ 196 (520)
T COG3634 154 DGALFQ---DEVEARNIMAV-PTVF--LNGE---EFG-QGRMTLEEILAKIDT 196 (520)
T ss_pred cchhhH---hHHHhccceec-ceEE--Ecch---hhc-ccceeHHHHHHHhcC
Confidence 988664 55666678777 8873 3332 221 466777777665543
No 446
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=27.05 E-value=1.1e+02 Score=25.47 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=26.1
Q ss_pred EEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCC
Q 018164 126 VFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIAD 160 (360)
Q Consensus 126 f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~ 160 (360)
+...| +.|....+.|.+++++|++ .+.++.|.++.
T Consensus 33 ~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 33 HPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred ecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 34455 7899999999999999974 36676666554
No 447
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function.
Probab=26.47 E-value=3.7e+02 Score=22.23 Aligned_cols=96 Identities=9% Similarity=0.145 Sum_probs=55.1
Q ss_pred HHHHHHhhhCCeEEEEEecCCC----Cc----cHHHHHHHHhcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEe---c
Q 018164 7 NEAEEFLKKYQTFVLGMFKKFE----GS----DYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVK---S 75 (360)
Q Consensus 7 ~~~~~~~~~~~~~vv~ff~~~~----~~----~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~---~ 75 (360)
.+++..-+++...+||||...+ .. ..++-..+++.+++--+..+.|..+....+ .|.+.+|. .
T Consensus 65 ~qvd~~~~~~gl~IvGyY~Ane~~~d~~~~~~a~kiad~I~~~~~~a~ll~idn~kl~~~~~------~~~~~~~~~~~~ 138 (196)
T PF03665_consen 65 AQVDAYAKSNGLVIVGYYQANERLDDNSPSPVAEKIADKIAENFSDACLLMIDNKKLSSDCK------APAISVYQRDGN 138 (196)
T ss_pred HHHHHHHhhCCCEEEEEEEeccccccCCCCHHHHHHHHHHHhhCCCcEEEEEECcccccccC------CCcceeeeeecc
Confidence 5677788889999999997654 22 355556666666776666777776644332 35555665 3
Q ss_pred CCCCccc-------c-CCCCChHHHHHHHhhccCCceeecC
Q 018164 76 EPDRYTG-------Y-EETFIMDKILQFLNYNKFPLVTKLT 108 (360)
Q Consensus 76 ~~~~~~~-------y-~g~~~~~~l~~fi~~~~~p~v~~l~ 108 (360)
.+.+... . ..+-..+.+...++....--+..|+
T Consensus 139 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lvDFD 179 (196)
T PF03665_consen 139 SGGKWKSKDKSSVLLESWEEALEIVSDLLKSKKYRQLVDFD 179 (196)
T ss_pred CCCceeecCCCceeeeCcHHHHHHHHHHHHhCCcCcccchh
Confidence 2322211 1 1222344566666665554444443
No 448
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=26.06 E-value=77 Score=24.52 Aligned_cols=73 Identities=14% Similarity=0.293 Sum_probs=44.9
Q ss_pred cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCC----CCCcEEEEEeCCCccCceEecCC
Q 018164 250 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQV----EEYPTLLFYPAGDKANPIKVSAR 323 (360)
Q Consensus 250 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i----~~~Pti~~~~~g~~~~~~~~~g~ 323 (360)
--++.+++|.|+=|......++.. .+.+-.+..+.- .+. +++| .+=-|.++ +| .-.+|-
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~--------Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~G-----y~vEGH 90 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKAN--------GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NG-----YYVEGH 90 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhC--------CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cC-----EEEecc
Confidence 346779999999998865555422 455555554433 222 3444 23334433 33 235789
Q ss_pred CCHHHHHHHHHHhc
Q 018164 324 SSSKNIAAFIKEQL 337 (360)
Q Consensus 324 ~~~~~l~~~i~~~~ 337 (360)
...+++..++.+--
T Consensus 91 VPa~aI~~ll~~~p 104 (149)
T COG3019 91 VPAEAIARLLAEKP 104 (149)
T ss_pred CCHHHHHHHHhCCC
Confidence 99999999998654
No 449
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=25.93 E-value=2.9e+02 Score=24.81 Aligned_cols=79 Identities=9% Similarity=0.060 Sum_probs=50.0
Q ss_pred CEEEEEecCCCCccccCCCCChHHHHHHHhhccCCceeecCcccccccccCC-CceEEEEEEeccchHHHHHHHHHHHHh
Q 018164 68 HFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSP-IKLQVYVFAKADDLKSLLEPLEDIARN 146 (360)
Q Consensus 68 p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~la~~ 146 (360)
-++.+|+.....++.|. -++..+...|+.-...++...+.. +|..+.+.. ....++||. ..+|.++...+.++-..
T Consensus 56 GtffvY~R~~~p~~gf~-i~NR~~~~nf~e~lt~d~~~~~~g-~fl~~rn~s~~i~glWf~d-~~~~~ri~~L~~~ll~~ 132 (335)
T KOG2868|consen 56 GTFFVYKRDASPRHGFL-IVNRLSPDNFVEPLTKDLIFQLQG-PFLLYRNESGSIYGLWFYD-KNDCQRIATLLKKLLYR 132 (335)
T ss_pred eEEEEEEccCCCccceE-eecCCChhhhhhhcCCCeeeeecC-cceeeeccccceeEEEecC-cchHHHHHHHHHHHHHH
Confidence 77889986555555554 235566777777666666655544 444444332 333455553 36899999999888887
Q ss_pred hcC
Q 018164 147 FKG 149 (360)
Q Consensus 147 ~~~ 149 (360)
+..
T Consensus 133 ~~~ 135 (335)
T KOG2868|consen 133 YGL 135 (335)
T ss_pred hhh
Confidence 764
No 450
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=25.80 E-value=1.6e+02 Score=24.21 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=30.4
Q ss_pred CCceEEEEEE-ec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCc
Q 018164 119 PIKLQVYVFA-KA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE 161 (360)
Q Consensus 119 ~~~~~v~f~~-~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~ 161 (360)
++..+++||. .| ..|......+.+++++|.. .+.++.|.++..
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 3445555553 34 8899988899999999984 377777776643
No 451
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=25.57 E-value=90 Score=21.45 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCCccccC-CCCChHHHHHHHhhc
Q 018164 67 DHFLGIVKSEPDRYTGYE-ETFIMDKILQFLNYN 99 (360)
Q Consensus 67 ~p~i~~~~~~~~~~~~y~-g~~~~~~l~~fi~~~ 99 (360)
.|.+++|-..+......+ ..++.++|.+|+...
T Consensus 42 ~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 42 PPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp --EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 499999987665444444 568999999999864
No 452
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=23.49 E-value=2.8e+02 Score=20.44 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=36.2
Q ss_pred cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164 247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 293 (360)
Q Consensus 247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~ 293 (360)
..+.+||.=.|+.|+.-. ....+++|.++++.. .+.+..+-|..-
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~-gl~ILaFPcnqF 64 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK-GLEILAFPCNQF 64 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG-TEEEEEEEBSTT
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC-CeEEEeeehHHh
Confidence 367888888899999988 667899999999753 688888887664
No 453
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=23.41 E-value=60 Score=24.22 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=19.3
Q ss_pred CCCCCcEEEEEeCCCccCceEecCC
Q 018164 299 QVEEYPTLLFYPAGDKANPIKVSAR 323 (360)
Q Consensus 299 ~i~~~Pti~~~~~g~~~~~~~~~g~ 323 (360)
....||++++.++|..+ .|+|..+
T Consensus 41 Y~R~Ypv~lV~pDGSTI-~Iry~EP 64 (116)
T PF09776_consen 41 YARLYPVLLVRPDGSTI-NIRYHEP 64 (116)
T ss_pred hhhhccEEEEecCCCEE-EEeccCh
Confidence 44579999999999998 4777754
No 454
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=22.79 E-value=3.2e+02 Score=25.02 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=45.2
Q ss_pred CCChhhHH-HHHHHHHHHHHhcCCC-CEEEEEEeCCCCCC-----CCCCCCC-CcEEEEEeCCCccCceEecCCCCHHHH
Q 018164 258 PWCVTCET-TSKQIEKLAKHFKGLD-NLVIAKIDASANEH-----PKLQVEE-YPTLLFYPAGDKANPIKVSARSSSKNI 329 (360)
Q Consensus 258 ~~c~~c~~-~~~~~~~la~~~~~~~-~~~~~~id~~~~~~-----~~~~i~~-~Pti~~~~~g~~~~~~~~~g~~~~~~l 329 (360)
|.|+.|.. +.....++-+.|.+.+ .++++-+-|--|.. .++++.+ -+...+|.+|+.++ +..+..-.+.|
T Consensus 272 PgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~--kv~~~~~~~~l 349 (360)
T PRK00366 272 PTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIK--TLPEENIVEEL 349 (360)
T ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEee--eeChHhHHHHH
Confidence 33555544 4555666666776644 59999999975533 3567764 45667888887754 33343334444
Q ss_pred HHHHHH
Q 018164 330 AAFIKE 335 (360)
Q Consensus 330 ~~~i~~ 335 (360)
.+-|.+
T Consensus 350 ~~~i~~ 355 (360)
T PRK00366 350 EAEIEA 355 (360)
T ss_pred HHHHHH
Confidence 444443
No 455
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.41 E-value=1.3e+02 Score=24.91 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=0.0
Q ss_pred CCCCCCCcEEEEEeCCCccCceEecC--CCCHHHHHHHHHHhcCCC
Q 018164 297 KLQVEEYPTLLFYPAGDKANPIKVSA--RSSSKNIAAFIKEQLKEK 340 (360)
Q Consensus 297 ~~~i~~~Pti~~~~~g~~~~~~~~~g--~~~~~~l~~~i~~~~~~~ 340 (360)
++++.+|||+.+-.+|+. .+.-.| -.+.+.+..++.+.+...
T Consensus 169 rlg~~GfPTl~le~ng~~--~~l~~g~y~~~~~~~~arl~~~~~~~ 212 (212)
T COG3531 169 RLGAAGFPTLALERNGTM--YVLGTGAYFGSPDAWLARLAQRLATA 212 (212)
T ss_pred HhccCCCCeeeeeeCCce--EeccCCcccCCcHHHHHHHHHHHhcC
No 456
>PHA02151 hypothetical protein
Probab=21.09 E-value=59 Score=25.49 Aligned_cols=17 Identities=29% Similarity=0.905 Sum_probs=14.3
Q ss_pred cccCccEEEEEeCCCCh
Q 018164 245 LNSHKDVLLEVYTPWCV 261 (360)
Q Consensus 245 ~~~~~~~~v~f~~~~c~ 261 (360)
.+.+.+-+|+||..||.
T Consensus 200 inr~h~~~v~fy~kwct 216 (217)
T PHA02151 200 INRNHDRYVHFYKKWCT 216 (217)
T ss_pred ecccCceEEEEehhhcc
Confidence 36678889999999995
No 457
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.52 E-value=2.4e+02 Score=23.94 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=35.6
Q ss_pred hHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCC
Q 018164 166 PFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTP 217 (360)
Q Consensus 166 ~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~ 217 (360)
..++.+||++. |+++ + ..+|...|-.+.+.+..-|++.++.+..+
T Consensus 175 ~~A~e~gI~gV-P~fv-~-----d~~~~V~Gaq~~~v~~~al~~~~~~~~~~ 219 (225)
T COG2761 175 AAAQEMGIRGV-PTFV-F-----DGKYAVSGAQPYDVLEDALRQLLAEKAEE 219 (225)
T ss_pred HHHHHCCCccC-ceEE-E-----cCcEeecCCCCHHHHHHHHHHHHhccccc
Confidence 55789999998 9984 3 34677789999999999999998765443
No 458
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=20.49 E-value=74 Score=22.14 Aligned_cols=47 Identities=11% Similarity=0.253 Sum_probs=37.9
Q ss_pred cchHHHHHHHHHHHHh-hcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164 131 DDLKSLLEPLEDIARN-FKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 181 (360)
Q Consensus 131 ~~~~~~~~~~~~la~~-~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~ 181 (360)
.........++.+.+. ..+...+-.||....+ .+++.++|-.. |+++
T Consensus 9 ~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P---~lAe~~~ivAt-PtLi 56 (82)
T PF07689_consen 9 PSSERAIENLRRLCEEYLGGRYELEVIDVLEQP---ELAEEDRIVAT-PTLI 56 (82)
T ss_dssp HHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSH---SHHTTTEEECH-HHHH
T ss_pred hHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCH---hHHhHCCeeec-ceEe
Confidence 5567777788888887 4467999999999887 88999999888 8874
No 459
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=20.13 E-value=1.2e+02 Score=27.54 Aligned_cols=75 Identities=21% Similarity=0.386 Sum_probs=44.0
Q ss_pred ChhhHHHHHHHHHHHH----HhcCCC-CEEEEEEeCCCCCC-----CCCCCC-C-CcEEEEEeCCCccCceEe-cCCCCH
Q 018164 260 CVTCETTSKQIEKLAK----HFKGLD-NLVIAKIDASANEH-----PKLQVE-E-YPTLLFYPAGDKANPIKV-SARSSS 326 (360)
Q Consensus 260 c~~c~~~~~~~~~la~----~~~~~~-~~~~~~id~~~~~~-----~~~~i~-~-~Pti~~~~~g~~~~~~~~-~g~~~~ 326 (360)
|+.|-...-.+.++++ .+...+ .++++-|-|--|.. .++++. + --...+|++|+.++ +. ....-.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~--k~~~ee~~v 348 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVK--KVIPEEEIV 348 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEE--EE-CSTCHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEE--ecCCHHHHH
Confidence 5555554444444444 444333 79999999999933 356665 3 34588999887753 44 566667
Q ss_pred HHHHHHHHHh
Q 018164 327 KNIAAFIKEQ 336 (360)
Q Consensus 327 ~~l~~~i~~~ 336 (360)
+.|.+-|+++
T Consensus 349 d~L~~~I~~~ 358 (359)
T PF04551_consen 349 DELIELIEEH 358 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7787777765
No 460
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=20.01 E-value=1.7e+02 Score=23.57 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=27.2
Q ss_pred EEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCC
Q 018164 125 YVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIAD 160 (360)
Q Consensus 125 ~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~ 160 (360)
+|.+|. ..|=...+.++++..++.+++.+-.+-...
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~~ 38 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGGL 38 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--S
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEccc
Confidence 566777 889999999999999999988887766553
Done!