BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018166
         (360 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
 pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
          Length = 859

 Score =  355 bits (911), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 184/320 (57%), Positives = 219/320 (68%), Gaps = 19/320 (5%)

Query: 1   MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNT 60
           ++++ILP  +  Y  +KRV +T LG+ +QC Q +   R   Q   N+ LKINVK+GG N 
Sbjct: 517 LVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNN 576

Query: 61  VLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ 120
           +L+   Q R P V  +P I  GADVTHP  G+   PSIAAVV SMD     +Y   V  Q
Sbjct: 577 ILLP--QGRPP-VFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQ 632

Query: 121 AHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQV 180
            H +EIIQDL               M+RELLI F +ST FKP RIIFYRDGVSEGQF QV
Sbjct: 633 QHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQV 679

Query: 181 LLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFD 240
           L HE+ AIR+AC  LE+ Y P +TF+VVQKRHHTRLF  D N R    +SGNI  GT  D
Sbjct: 680 LHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNER--VGKSGNIPAGTTVD 737

Query: 241 THICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSV 300
           T I HPTEFDFYL SHAGIQGTSRP+HYHVL+D+NRFS+D+ Q+LT  LC+TY RCTRSV
Sbjct: 738 TKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSV 797

Query: 301 SIVPPAYYAHLAAFRARYYI 320
           SI  PAYYAHL AFRARY++
Sbjct: 798 SIPAPAYYAHLVAFRARYHL 817


>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
          Length = 861

 Score =  355 bits (910), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 184/320 (57%), Positives = 219/320 (68%), Gaps = 19/320 (5%)

Query: 1   MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNT 60
           ++++ILP  +  Y  +KRV +T LG+ +QC Q +   R   Q   N+ LKINVK+GG N 
Sbjct: 519 LVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNN 578

Query: 61  VLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ 120
           +L+   Q R P V  +P I  GADVTHP  G+   PSIAAVV SMD     +Y   V  Q
Sbjct: 579 ILLP--QGRPP-VFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQ 634

Query: 121 AHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQV 180
            H +EIIQDL               M+RELLI F +ST FKP RIIFYRDGVSEGQF QV
Sbjct: 635 QHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQV 681

Query: 181 LLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFD 240
           L HE+ AIR+AC  LE+ Y P +TF+VVQKRHHTRLF  D N R    +SGNI  GT  D
Sbjct: 682 LHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNER--VGKSGNIPAGTTVD 739

Query: 241 THICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSV 300
           T I HPTEFDFYL SHAGIQGTSRP+HYHVL+D+NRFS+D+ Q+LT  LC+TY RCTRSV
Sbjct: 740 TKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSV 799

Query: 301 SIVPPAYYAHLAAFRARYYI 320
           SI  PAYYAHL AFRARY++
Sbjct: 800 SIPAPAYYAHLVAFRARYHL 819


>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
           Domains
          Length = 437

 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 174/333 (52%), Gaps = 33/333 (9%)

Query: 1   MLIIILP--DVSGSYGRIKRVCETELGIVSQCCQPRQ--ASRLNMQYFENVALKINVKVG 56
            ++++LP  DV+  Y  +KR  +   G+ + CC   +  +++  + YF NV LK+N+K G
Sbjct: 81  FVVVLLPRKDVA-IYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFG 139

Query: 57  GRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQ---PGED--SSPSIAAVVASMDWPEVT 111
           G N      ++  IPL+    T++ G DVTHP     G+   S+PSI  +V+++D   + 
Sbjct: 140 GTN----HNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLG 194

Query: 112 KYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDG 171
           ++  +V    H +E + + +      +          EL  +   +    P  I+ +RDG
Sbjct: 195 QWPAMVWNNPHGQESMTEQFTDKFKTRL---------ELWRSNPANNRSLPENILIFRDG 245

Query: 172 VSEGQFSQVLLHEMNAIRQACASL-EEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRS 230
           VSEGQF  V+  E+  +R AC  +   G  P +T +V  KRH TR FP D        +S
Sbjct: 246 VSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHIHFKSKS 305

Query: 231 GNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDE------NRFSADDFQV 284
                GTV D  + +   +DF+L +HA +QGT+R  HY VL DE         +AD  + 
Sbjct: 306 PK--EGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQ 363

Query: 285 LTNNLCYTYARCTRSVSIVPPAYYAHLAAFRAR 317
           LT+++CY + R T++VSI PPAYYA L   RAR
Sbjct: 364 LTHDMCYLFGRATKAVSICPPAYYADLVCDRAR 396


>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With
            A Guide Rna
 pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute With
            A Guide Rna
          Length = 1046

 Score =  175 bits (443), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 186/371 (50%), Gaps = 40/371 (10%)

Query: 10   SGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL-VDAVQK 68
            S  Y R+K + + + G ++ C       + ++QY  NV +K+N+K+ G N  L ++  + 
Sbjct: 694  SAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIENNKL 753

Query: 69   RIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ-AHHEEII 127
             I   ++ P ++ G+DVTH  P +D + SIA++V S D  + T++ G    Q    EEII
Sbjct: 754  LIDKESNLPILVLGSDVTH-YPEKDQN-SIASLVGSYD-DKFTQFPGDYMLQDGPGEEII 810

Query: 128  QDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFK-PHRIIFYRDGVSEGQFSQVLLHEMN 186
             ++             G ++   L  +++  N K P +I+++RDGVS  QFSQV+  E+ 
Sbjct: 811  TNV-------------GSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVK 857

Query: 187  AIRQAC----ASLEEG--YAPPVTFVVVQKRHHTRLFPADHNRRDLTDRS------GNIL 234
            +I+++       L  G  Y PPVT +   KR+  R  P   N ++           GN++
Sbjct: 858  SIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVM 917

Query: 235  PGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYA 294
            PGTV D  I     FDF++ SH  ++GT  P HY  LYDEN+ ++D  Q + NNLCY + 
Sbjct: 918  PGTVVDRGITSVAHFDFFIQSHQALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFG 977

Query: 295  RCTRSVSIVPPAYYAHLAA------FRARYYIXXXXXXXXXXXXXXXXXXXNLAIRPLPV 348
            R T SV +  P YYA L        F+A + +                   N+    LP 
Sbjct: 978  RSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEKGSKDQPTVSKNVL---LPQ 1034

Query: 349  IKDNVKDVMFY 359
            + DN+K VM+Y
Sbjct: 1035 VNDNIKSVMYY 1045


>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
           Domains
          Length = 388

 Score =  115 bits (287), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 146/332 (43%), Gaps = 82/332 (24%)

Query: 2   LIIILP--DVSGSYGRIKRVCETELGIVSQCCQPRQ--ASRLNMQYFENVALKINVKVGG 57
           ++++LP  DV+  Y  +KR  +   G+ + CC   +  +++  + YF NV LK+N+K GG
Sbjct: 82  VVVLLPRKDVA-IYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGG 140

Query: 58  RNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQ---PGED--SSPSIAAVVASMDWPEVTK 112
            N      ++  IPL+    T++ G DVTHP     G+   S+PSI  +V+++D   + +
Sbjct: 141 TN----HNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQ 195

Query: 113 YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGV 172
           +  +V    H +E + + +      +          EL  +   +    P  I+ +RDGV
Sbjct: 196 WPAMVWNNPHGQESMTEQFTDKFKTRL---------ELWRSNPANNRSLPENILIFRDGV 246

Query: 173 SEGQFSQVLLHEMNAIRQACASL-EEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSG 231
           SEGQF  V+  E+  +R AC  +   G  P +T +V  K                     
Sbjct: 247 SEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVK--------------------- 285

Query: 232 NILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDE------NRFSADDFQVL 285
                                          S   HY VL DE         +AD  + L
Sbjct: 286 ------------------------------GSGSAHYTVLVDEIFRADYGNKAADTLEQL 315

Query: 286 TNNLCYTYARCTRSVSIVPPAYYAHLAAFRAR 317
           T+++CY + R T++VSI PPAYYA L   RAR
Sbjct: 316 THDMCYLFGRATKAVSICPPAYYADLVCDRAR 347


>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
 pdb|4G0O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
          Length = 139

 Score =  114 bits (286), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 58/62 (93%)

Query: 1   MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNT 60
           +LI+ILPDV+GSYG+IKR+CETELGIVSQCCQPRQ ++LN QY ENVALKINVK GGRNT
Sbjct: 78  LLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNT 137

Query: 61  VL 62
           VL
Sbjct: 138 VL 139


>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
           Binding By Arabidopsis Ago Mid Domains
          Length = 154

 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 53/64 (82%), Gaps = 1/64 (1%)

Query: 1   MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRN 59
           +LI+ILPD +GS YG +KR+CETELGIVSQCC  +   +++ QY  NVALKINVKVGGRN
Sbjct: 85  LLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRN 144

Query: 60  TVLV 63
           TVLV
Sbjct: 145 TVLV 148


>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
           In Complex With Ump
 pdb|4G0Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
           In Complex With Cmp
 pdb|4G0Y|A Chain A, Crystal Structure Of Arabidopsis Ago1 In Complex With Amp
 pdb|4G0Z|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
           In Complex With Gmp
          Length = 147

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 52/63 (82%), Gaps = 1/63 (1%)

Query: 1   MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRN 59
           +LI+ILPD +GS YG +KR+CETELGIVSQCC  +   +++ QY  NVALKINVKVGGRN
Sbjct: 85  LLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRN 144

Query: 60  TVL 62
           TVL
Sbjct: 145 TVL 147


>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
           Binding By Arabidopsis Ago Domains
          Length = 155

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 51/65 (78%), Gaps = 2/65 (3%)

Query: 1   MLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGR 58
           +LI+ILPD   S  YG +KR+CETELGIVSQCC  +   +++ QY  NVALKINVKVGGR
Sbjct: 85  LLIVILPDKKNSDLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGR 144

Query: 59  NTVLV 63
           NTVLV
Sbjct: 145 NTVLV 149


>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
          Length = 147

 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 51/63 (80%), Gaps = 1/63 (1%)

Query: 1   MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRN 59
           +LI+ILPD +GS YG +KR+CETELGIVSQCC  +   + + QY  NVALKINVKVGGRN
Sbjct: 85  LLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKXSKQYXANVALKINVKVGGRN 144

Query: 60  TVL 62
           TVL
Sbjct: 145 TVL 147


>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2
 pdb|3LUC|B Chain B, Crystal Structure Of Mid Domain From Hago2
 pdb|3LUC|C Chain C, Crystal Structure Of Mid Domain From Hago2
 pdb|3LUD|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Amp
 pdb|3LUD|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Amp
 pdb|3LUD|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Amp
 pdb|3LUG|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Cmp
 pdb|3LUG|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Cmp
 pdb|3LUG|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Cmp
 pdb|3LUH|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Gmp
 pdb|3LUH|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Gmp
 pdb|3LUH|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Gmp
 pdb|3LUJ|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Ump
 pdb|3LUJ|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Ump
 pdb|3LUJ|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Ump
 pdb|3QX8|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
           M7gpppg
 pdb|3QX8|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
           M7gpppg
 pdb|3QX8|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
           M7gpppg
 pdb|3QX9|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Atp
 pdb|3QX9|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Atp
 pdb|3QX9|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
           Atp
          Length = 138

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query: 1   MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRN 59
           ++++ILP  +  Y  +KRV +T LG+ +QC Q +   R   Q   N+ LKINVK+GG N
Sbjct: 80  LVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138


>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2
 pdb|3LUK|B Chain B, Crystal Structure Of Mid Domain From Hago2
 pdb|3LUK|C Chain C, Crystal Structure Of Mid Domain From Hago2
          Length = 138

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 1   MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRN 59
           ++++ILP  +  Y  +KRV +T LG  +QC Q +   R   Q   N+ LKINVK+GG N
Sbjct: 80  LVVVILPGKTPVYAEVKRVGDTVLGXATQCVQXKNVQRTTPQTLSNLCLKINVKLGGVN 138


>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
 pdb|4G0M|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
          Length = 150

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%)

Query: 12  SYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL 62
            Y  +K + ET+LG+V+QC     A++   QY  N+ALK+N KVGG N  L
Sbjct: 100 GYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150


>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain
          Length = 145

 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 2   LIIILP--DVSGSYGRIKRVCETELGIVSQCCQPRQ--ASRLNMQYFENVALKINVKVGG 57
           ++++LP  DV+  Y  +KR  +   G+ + CC   +  +++  + YF NV LK+N+K GG
Sbjct: 82  VVVLLPRKDVA-IYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGG 140

Query: 58  RN 59
            N
Sbjct: 141 TN 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,218,343
Number of Sequences: 62578
Number of extensions: 398742
Number of successful extensions: 1128
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 18
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)