Query 018166
Match_columns 360
No_of_seqs 132 out of 915
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 1.1E-88 2.4E-93 725.4 33.7 345 1-360 553-900 (900)
2 cd04657 Piwi_ago-like Piwi_ago 100.0 3E-86 6.5E-91 659.8 32.5 301 1-320 123-426 (426)
3 KOG1041 Translation initiation 100.0 6.9E-82 1.5E-86 668.6 32.8 344 1-360 529-876 (876)
4 cd04658 Piwi_piwi-like_Euk Piw 100.0 2.5E-77 5.4E-82 600.2 31.7 289 1-317 155-447 (448)
5 PF02171 Piwi: Piwi domain; I 100.0 2.2E-77 4.7E-82 572.0 28.7 296 1-320 1-301 (302)
6 cd02826 Piwi-like Piwi-like: P 100.0 8.6E-77 1.9E-81 586.7 32.5 290 1-318 99-393 (393)
7 KOG1042 Germ-line stem cell di 100.0 4.4E-72 9.5E-77 550.2 23.0 290 1-321 535-831 (845)
8 cd04659 Piwi_piwi-like_ProArk 100.0 8.1E-49 1.8E-53 389.0 26.6 270 1-317 113-401 (404)
9 COG1431 Argonaute homolog, imp 99.6 3.6E-14 7.9E-19 140.3 15.1 242 13-321 421-671 (685)
10 PF13032 DUF3893: Domain of un 95.8 0.024 5.1E-07 48.1 6.1 57 262-322 66-122 (138)
11 cd06559 Endonuclease_V Endonuc 95.2 1 2.2E-05 40.9 14.9 42 263-314 166-207 (208)
12 PRK11617 endonuclease V; Provi 95.2 1.1 2.3E-05 41.1 14.9 48 263-320 170-217 (224)
13 COG1515 Nfi Deoxyinosine 3'end 91.8 2.8 6.2E-05 37.9 11.2 36 274-316 176-211 (212)
14 PF08459 UvrC_HhH_N: UvrC Heli 89.2 4.5 9.9E-05 34.9 9.9 100 76-211 10-114 (155)
15 PF04493 Endonuclease_5: Endon 79.7 6.9 0.00015 35.4 7.0 31 276-313 175-206 (206)
16 TIGR00194 uvrC excinuclease AB 75.3 32 0.0007 36.1 11.3 108 78-219 382-497 (574)
17 PRK14672 uvrC excinuclease ABC 68.7 54 0.0012 35.1 11.1 107 76-218 453-563 (691)
18 PRK12306 uvrC excinuclease ABC 64.6 85 0.0018 32.6 11.5 106 76-218 365-475 (519)
19 PRK14669 uvrC excinuclease ABC 63.4 57 0.0012 34.7 10.2 107 76-218 395-506 (624)
20 PRK14670 uvrC excinuclease ABC 63.3 1E+02 0.0022 32.4 11.9 110 76-218 357-471 (574)
21 PRK14666 uvrC excinuclease ABC 60.9 1.1E+02 0.0024 32.9 11.7 100 76-210 471-571 (694)
22 PRK14667 uvrC excinuclease ABC 60.8 99 0.0021 32.5 11.3 106 76-218 360-470 (567)
23 PRK14671 uvrC excinuclease ABC 59.5 1E+02 0.0022 32.8 11.2 106 76-218 414-524 (621)
24 PRK00766 hypothetical protein; 58.2 20 0.00044 32.1 5.0 35 275-316 152-186 (194)
25 PRK00558 uvrC excinuclease ABC 58.0 97 0.0021 32.8 10.8 100 76-211 382-486 (598)
26 PF02772 S-AdoMet_synt_M: S-ad 57.0 7.1 0.00015 32.2 1.8 31 291-321 12-42 (120)
27 PF09373 PMBR: Pseudomurein-bi 55.0 14 0.0003 23.0 2.5 19 149-167 15-33 (33)
28 cd01457 vWA_ORF176_type VWA OR 43.6 1.7E+02 0.0036 25.7 8.7 66 139-209 80-150 (199)
29 PRK14668 uvrC excinuclease ABC 40.2 2.7E+02 0.0058 29.4 10.7 103 76-212 374-479 (577)
30 COG0192 MetK S-adenosylmethion 38.7 21 0.00046 34.7 2.1 33 289-321 125-157 (388)
31 COG0322 UvrC Nuclease subunit 37.0 3.7E+02 0.0081 28.4 11.1 106 76-218 378-486 (581)
32 COG4634 Uncharacterized protei 36.0 82 0.0018 25.5 4.7 35 160-194 66-101 (113)
33 PF00763 THF_DHG_CYH: Tetrahyd 33.4 77 0.0017 25.7 4.4 51 2-54 33-85 (117)
34 PF01949 DUF99: Protein of unk 32.6 40 0.00086 30.1 2.7 39 270-315 142-180 (187)
35 PF08795 DUF1796: Putative pap 29.7 2.5E+02 0.0054 24.2 7.3 55 145-208 102-161 (167)
36 COG1431 Argonaute homolog, imp 27.1 2E+02 0.0043 30.3 6.8 62 2-65 239-305 (685)
37 PRK14183 bifunctional 5,10-met 25.3 1.4E+02 0.0031 28.3 5.2 51 2-54 35-87 (281)
38 PTZ00104 S-adenosylmethionine 24.2 55 0.0012 32.5 2.3 28 291-318 132-159 (398)
39 PRK05250 S-adenosylmethionine 23.8 56 0.0012 32.3 2.2 30 291-320 123-152 (384)
40 PF09469 Cobl: Cordon-bleu ubi 23.8 42 0.00092 25.4 1.1 20 159-178 8-27 (79)
41 PRK14187 bifunctional 5,10-met 22.4 2.1E+02 0.0045 27.5 5.8 51 2-54 36-88 (294)
42 PLN02243 S-adenosylmethionine 22.1 62 0.0013 32.0 2.2 28 291-318 127-154 (386)
43 PRK14178 bifunctional 5,10-met 21.6 2E+02 0.0043 27.3 5.4 51 2-54 30-82 (279)
44 smart00537 DCX Domain in the D 21.4 61 0.0013 25.0 1.6 14 160-173 3-16 (89)
45 PRK14192 bifunctional 5,10-met 21.3 2.3E+02 0.005 26.8 5.9 58 2-62 37-99 (283)
46 PRK14181 bifunctional 5,10-met 21.1 2E+02 0.0042 27.5 5.3 51 2-54 30-82 (287)
47 PRK14173 bifunctional 5,10-met 21.0 2E+02 0.0043 27.5 5.3 51 2-54 33-85 (287)
48 PF11019 DUF2608: Protein of u 20.9 2E+02 0.0042 26.8 5.2 37 149-195 165-201 (252)
49 PRK14166 bifunctional 5,10-met 20.1 2.1E+02 0.0046 27.2 5.3 51 2-54 34-86 (282)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=1.1e-88 Score=725.40 Aligned_cols=345 Identities=46% Similarity=0.786 Sum_probs=301.2
Q ss_pred CEEEEEcCC-CCc-hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhhcCCceeeecccccccCCccCCCCe
Q 018166 1 MLIIILPDV-SGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPT 78 (360)
Q Consensus 1 lvl~ilp~~-~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~~~~t 78 (360)
|||||+|++ +.+ |+.||++|+.++||+||||.... .++|++.||++|||+||||+||.++...+..+|++.+.+|
T Consensus 553 lv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~---~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~t 629 (900)
T PLN03202 553 FLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPTR---VNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPT 629 (900)
T ss_pred EEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCccc---cchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCe
Confidence 689999975 556 99999999999999999996543 4689999999999999999999887654455788777899
Q ss_pred EEEEEeecCCCCCCCCCCcEEEEEEeeCCCCcccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHHhc
Q 018166 79 IIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRST 158 (360)
Q Consensus 79 miiGidvsh~~~~~~~~~si~avvaS~d~~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~~ 158 (360)
||||+||+|++++....||++|+|||+||+.+++|++.++.|..++|++++++....+ ..+++|++++|..|++.+
T Consensus 630 MivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~ 705 (900)
T PLN03202 630 IILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSS 705 (900)
T ss_pred EEEEEEeecCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHc
Confidence 9999999999887645799999999999878999999999999999999886432111 125889999999999865
Q ss_pred -CCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCee
Q 018166 159 -NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGT 237 (360)
Q Consensus 159 -~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~~~~N~~~Gt 237 (360)
+++|++|||||||||||||.+|+++|+++|++||++++++|+|+||||+|+||||+|||+.. ..+||+|||
T Consensus 706 ~~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGT 777 (900)
T PLN03202 706 GKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGT 777 (900)
T ss_pred CCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCce
Confidence 69999999999999999999999999999999999998889999999999999999999853 358999999
Q ss_pred eeccccccCCcccEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHHhh
Q 018166 238 VFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRAR 317 (360)
Q Consensus 238 vVd~~i~~~~~~dF~L~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r~~ 317 (360)
|||++||+|..+||||+||.++|||+||+||+||+||+++++|+||+|||+|||+|+||+++||+|+|+||||++|+|||
T Consensus 778 vVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r 857 (900)
T PLN03202 778 VVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMG 857 (900)
T ss_pred EeccccccCCcceEEEecccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCCCCCCCCCccccccCCCCccccccCCCCceeC
Q 018166 318 YYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC 360 (360)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 360 (360)
+|+..+.++++++++++++.....+..+++.||++++++||||
T Consensus 858 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 858 QFMKFEDMSETSSSHGGITSAGAVPVPELPRLHENVASSMFFC 900 (900)
T ss_pred hhccccCCccccccccccCCCCccccccccccchhhcCCeeeC
Confidence 9998654333332222222222333457788999999999998
No 2
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=3e-86 Score=659.82 Aligned_cols=301 Identities=61% Similarity=1.024 Sum_probs=280.6
Q ss_pred CEEEEEcCCCCc-hHHHHHHhhhhcCceeeeeecccccc-chhhHHHHHHHHHHhhcCCceeeecccccccCCccCCCCe
Q 018166 1 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASR-LNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPT 78 (360)
Q Consensus 1 lvl~ilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k-~~~~~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~~~~t 78 (360)
|||||+|+++.+ |+.||++|+.+.||+||||..+++.+ .+++++.||++|||+||||+||.+++.. .+++...+|
T Consensus 123 lv~~ilp~~~~~~Y~~iK~~~~~~~gI~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~t 199 (426)
T cd04657 123 LVLVILPKKDSDIYGRIKRLADTELGIHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPT 199 (426)
T ss_pred EEEEEEcCCCcchHHHHHHHHhhcCCcccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCE
Confidence 689999998866 99999999999999999999999875 6789999999999999999999998651 233445899
Q ss_pred EEEEEeecCCCCCC-CCCCcEEEEEEeeCCCCcccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHHh
Q 018166 79 IIFGADVTHPQPGE-DSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRS 157 (360)
Q Consensus 79 miiGidvsh~~~~~-~~~~si~avvaS~d~~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~ 157 (360)
||||+||+|++++. ...||++|+|||+| .++++|.+.++.|..++|+++++ +++++++|+.|++.
T Consensus 200 miiG~Dv~H~~~~~~~~~pSiaa~Vas~d-~~~~~y~~~~~~q~~~~e~i~~l-------------~~~~~~~l~~~~~~ 265 (426)
T cd04657 200 MVLGADVTHPSPGDPAGAPSIAAVVASVD-WHLAQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKA 265 (426)
T ss_pred EEEEEeeecCCCCCCCCCCcEEEEEEecC-CcccccceEEEEeCCCcchHHHH-------------HHHHHHHHHHHHHH
Confidence 99999999998875 46799999999999 89999999999999999999988 99999999999999
Q ss_pred cCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCee
Q 018166 158 TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGT 237 (360)
Q Consensus 158 ~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~~~~N~~~Gt 237 (360)
+|.+|++|||||||||||||++|+++|+++|++||.++.++|+|+||||+|+||||+|||+.+..+++ ...+||+|||
T Consensus 266 ~~~~P~~IiiyRDGvsegq~~~v~~~E~~~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~--~~~~N~~pGT 343 (426)
T cd04657 266 TGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDAD--GKNGNVPPGT 343 (426)
T ss_pred hCCCCceEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEeccceeeeEeccCccccc--ccCCCCCCCe
Confidence 99999999999999999999999999999999999999888999999999999999999997654211 1378999999
Q ss_pred eeccccccCCcccEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHHhh
Q 018166 238 VFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRAR 317 (360)
Q Consensus 238 vVd~~i~~~~~~dF~L~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r~~ 317 (360)
|||++||+|..+||||+||.++||||||+||+||+||+++++|+||+|||+|||+|++|+++||+|+|+||||++|+|||
T Consensus 344 vVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r 423 (426)
T cd04657 344 VVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARAR 423 (426)
T ss_pred EEecccCCCCceeEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 018166 318 YYI 320 (360)
Q Consensus 318 ~~~ 320 (360)
+|+
T Consensus 424 ~~~ 426 (426)
T cd04657 424 CYL 426 (426)
T ss_pred hcC
Confidence 986
No 3
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-82 Score=668.62 Aligned_cols=344 Identities=47% Similarity=0.728 Sum_probs=305.9
Q ss_pred CEEEEEcCCCCc-hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhhcCCceeeecccccccCCccCCCCeE
Q 018166 1 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTI 79 (360)
Q Consensus 1 lvl~ilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~~~~tm 79 (360)
|++||+|++..+ |..||++++...||+|||+..+++.+..+|++.||++|||+||||+|+.+..+.....| ....+||
T Consensus 529 li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~-~~~~ptl 607 (876)
T KOG1041|consen 529 LVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP-KLDSPTL 607 (876)
T ss_pred EEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc-cCCCCeE
Confidence 578999999888 99999999989999999999999888889999999999999999999988876333333 3468999
Q ss_pred EEEEeecCCCCCCCC--CCcEEEEEEeeCCCCcccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHHh
Q 018166 80 IFGADVTHPQPGEDS--SPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRS 157 (360)
Q Consensus 80 iiGidvsh~~~~~~~--~~si~avvaS~d~~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~ 157 (360)
|||+||+||+++... .||+||||+|+|| +.++|.+.+++|..++|.++++ ++++.++|..|++.
T Consensus 608 ~IG~dVsHp~~~~~~~~~PSiagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~-------------~~~~~~~l~~f~~~ 673 (876)
T KOG1041|consen 608 FIGFDVSHPAAGTSFDGNPSIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL-------------GEMIRELLRSFRKS 673 (876)
T ss_pred EEEEeeeCCCcCCCcCCCccEEEEEecccc-cchhhcceEEEecCChhhhcch-------------HHHHHHHHHHHHHh
Confidence 999999999988655 5999999999997 8899999999999999999875 99999999999999
Q ss_pred cCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCee
Q 018166 158 TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGT 237 (360)
Q Consensus 158 ~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~~~~N~~~Gt 237 (360)
++.+|+||||||||||||||.+|+++|+.+|++||..+.++|+|+||||+|+||||+|||+.+..+ +..+..+|++|||
T Consensus 674 t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qKrHhtR~F~~~~~~-~~~~~~~Nv~pGT 752 (876)
T KOG1041|consen 674 TRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKLQEGYNPKITVIVAQKRHHTRLFAAELSK-DGKAQSQNVPPGT 752 (876)
T ss_pred ccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccceeeecccCCC-CccCCccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999987752 2345678999999
Q ss_pred eeccccccCCcccEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHHhh
Q 018166 238 VFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRAR 317 (360)
Q Consensus 238 vVd~~i~~~~~~dF~L~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r~~ 317 (360)
+||+.||+|.++||||+||.++|||+||+||+||+||+++++|+||+|||.|||+|++|+++||||+|+||||++|+|||
T Consensus 753 ~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~dd~~~~~d~lq~lt~~Lc~~~qr~t~pvSiP~P~YyA~~~A~Rgr 832 (876)
T KOG1041|consen 753 VVDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLYDDIGFSKDELQKLTYALCFTHQRCTKPVSLPAPLYYAHEVAKRGR 832 (876)
T ss_pred EecccccCCCcceEEEeccCcccccccCceEEEEeCCCCCCHHHHHHHHHHHhhheeeecCCCcCCchHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCCCCCCCC-CccccccCCCCccccccCCCCceeC
Q 018166 318 YYIEDETSAGGSTGGSRS-TADRNLAIRPLPVIKDNVKDVMFYC 360 (360)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~m~~~ 360 (360)
++.+....++....+..+ .+......+..+.+|.++..+||||
T Consensus 833 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~f~a 876 (876)
T KOG1041|consen 833 NNYKEHLREKNSSAIYQSIVDLDALNSEEGYKEKAGLFGTRFNA 876 (876)
T ss_pred hhhhhhccccCCCcccccccccchhhhhhHHHhhhcccceEEeC
Confidence 983221122211111111 2333444567899999999999998
No 4
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=2.5e-77 Score=600.19 Aligned_cols=289 Identities=35% Similarity=0.541 Sum_probs=268.5
Q ss_pred CEEEEEcCCCCc-hHHHHHHhhhhcCceeeeeeccccccc--hhhHHHHHHHHHHhhcCCceeeecccccccCCccCCCC
Q 018166 1 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRL--NMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRP 77 (360)
Q Consensus 1 lvl~ilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~--~~~~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~~~~ 77 (360)
|+|||+|++..+ |..||++++.+.||+||||..+++.+. ..+++.||++|||+||||.||.++.. .....+
T Consensus 155 lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~~~~~~ 228 (448)
T cd04658 155 LVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------PFILKN 228 (448)
T ss_pred EEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC------CCCCCC
Confidence 689999998766 999999999999999999999998763 46789999999999999999998753 123478
Q ss_pred eEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCcccceeEEEEccCchhh-hhhhhhccCCCCCccchhHHHHHHHHHHHH
Q 018166 78 TIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEI-IQDLYKSTQDPQRGLVHGGMIRELLIAFRR 156 (360)
Q Consensus 78 tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~y~~~~~~q~~~~e~-i~~~~~~~~~~~~~~~~~~~~~~~L~~f~~ 156 (360)
|||||+||+|+.++ ..+|++|+|||+| +++++|++.+..|..++|. ++++ +++++++|+.|++
T Consensus 229 tmiiGidv~h~~~~--~~~Si~a~vas~~-~~~~~~~~~~~~q~~~~e~~~~~l-------------~~~~~~~l~~y~~ 292 (448)
T cd04658 229 TMIVGIDVYHDTIT--KKKSVVGFVASLN-KSITKWFSKYISQVRGQEEIIDSL-------------GKSMKKALKAYKK 292 (448)
T ss_pred eEEEEEeeecCCCC--CCCcEEEEEEEcC-CCCceEeeEEEEeCCCceeeHHHH-------------HHHHHHHHHHHHH
Confidence 99999999999863 4699999999999 9999999999999988887 7777 9999999999999
Q ss_pred hcCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCe
Q 018166 157 STNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPG 236 (360)
Q Consensus 157 ~~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~~~~N~~~G 236 (360)
.+|.+|++||||||||||||+.+++++|+++|++||.++..+|+|+|+||+|+||||+|||+.++. ..+||+||
T Consensus 293 ~~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~------~~~N~~~G 366 (448)
T cd04658 293 ENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGN------NFSNPPPG 366 (448)
T ss_pred HhCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCC------CCCCCCCC
Confidence 999999999999999999999999999999999999988888999999999999999999997653 45899999
Q ss_pred eeeccccccCCcccEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHHh
Q 018166 237 TVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 316 (360)
Q Consensus 237 tvVd~~i~~~~~~dF~L~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r~ 316 (360)
||||++||+|..+||||+||.+.+|||||+||+|++||+++++|+||+|||+|||+|++|++++|+|+|+||||++|+|.
T Consensus 367 TvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA~~~a~~~ 446 (448)
T cd04658 367 TVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAFLV 446 (448)
T ss_pred cEecccccCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred h
Q 018166 317 R 317 (360)
Q Consensus 317 ~ 317 (360)
.
T Consensus 447 g 447 (448)
T cd04658 447 G 447 (448)
T ss_pred c
Confidence 4
No 5
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=2.2e-77 Score=571.96 Aligned_cols=296 Identities=46% Similarity=0.754 Sum_probs=267.1
Q ss_pred CEEEEEcCCCCc-hHHHHHHhhhhcCceeeeeeccccccc--hhhHHHHHHHHHHhhcCCce-eeecccccccCCccCCC
Q 018166 1 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRL--NMQYFENVALKINVKVGGRN-TVLVDAVQKRIPLVTDR 76 (360)
Q Consensus 1 lvl~ilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~--~~~~~~ni~lkinaKlGG~n-~~l~~~~~~~~p~~~~~ 76 (360)
|+|||+|+++.+ |+.+|++++.++||+||||..+++.+. ..+++.||++|||+||||.| |.++.. ...++ .
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~--~~~~~---~ 75 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSP--PSIDL---K 75 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCS--SGSSE---S
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccc--ccccc---C
Confidence 689999998777 999999999999999999999999876 46999999999999999995 555433 11222 6
Q ss_pred CeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCcccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHH
Q 018166 77 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRR 156 (360)
Q Consensus 77 ~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f~~ 156 (360)
++||||+||+|++++....+|++|+|+|+| ++.++|.+.+..|..++|.++++ +++++++|+.|++
T Consensus 76 ~~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~L~~~~~ 141 (302)
T PF02171_consen 76 NTMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNL-------------EEIIKEALKEFKK 141 (302)
T ss_dssp EEEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHH-------------HHHHHHHHHHHHH
T ss_pred ceEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcch-------------hhHHHHHHHHHHH
Confidence 899999999999876556799999999999 99999999999999999999887 9999999999999
Q ss_pred hcCC-CCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCC
Q 018166 157 STNF-KPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILP 235 (360)
Q Consensus 157 ~~~~-~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~~~~N~~~ 235 (360)
.++. +|++||||||||||||+++++++|+++|++||+++..+|+|++++|+|+|||++|||+.+++ +...||+|
T Consensus 142 ~~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~-----~~~~N~~~ 216 (302)
T PF02171_consen 142 NNGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGR-----DGLQNPPP 216 (302)
T ss_dssp TTTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSE-----ETTTEECT
T ss_pred HcCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeecccc-----cccCCCCC
Confidence 9997 99999999999999999999999999999999999989999999999999999999998764 24789999
Q ss_pred eeeeccccccCCcccEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHH
Q 018166 236 GTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFR 315 (360)
Q Consensus 236 GtvVd~~i~~~~~~dF~L~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r 315 (360)
||+||+.+++|..+||||+||.+.+||+||+||+|++||..+++|+||++||+|||+|++|++++|+|+|+||||++|+|
T Consensus 217 Gtvvd~~i~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~ 296 (302)
T PF02171_consen 217 GTVVDTGITSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKR 296 (302)
T ss_dssp TEEESSEEEECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHH
T ss_pred CeeeccceeeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh
Q 018166 316 ARYYI 320 (360)
Q Consensus 316 ~~~~~ 320 (360)
+++++
T Consensus 297 ~~~~~ 301 (302)
T PF02171_consen 297 GRNNL 301 (302)
T ss_dssp HHHHC
T ss_pred HHhhc
Confidence 99976
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=8.6e-77 Score=586.70 Aligned_cols=290 Identities=37% Similarity=0.592 Sum_probs=262.6
Q ss_pred CEEEEEcCCCCc-hHHHHHHhhhhcCceeeeeecccccc--chhhHHHHHHHHHHhhcCCceeeecccccccCCccCCCC
Q 018166 1 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASR--LNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRP 77 (360)
Q Consensus 1 lvl~ilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k--~~~~~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~~~~ 77 (360)
|++||+|+++.+ |+.||++++.. ||+||||..+++.+ ..++++.||++|||+||||.||.++.+ .+...+
T Consensus 99 lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~~~~~~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~ 171 (393)
T cd02826 99 LVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMRRLKQTLDNLLRKVNSKLGGINYILDSP------VKLFKS 171 (393)
T ss_pred EEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhhccccccHHHHHHHHHHHhhhhCCeeeEeccC------CCCCCC
Confidence 689999998767 99999999877 99999999999876 568999999999999999999999764 122478
Q ss_pred eEEEEEeecCCCCC-CCCCCcEEEEEEeeCCCCcccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHH
Q 018166 78 TIIFGADVTHPQPG-EDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRR 156 (360)
Q Consensus 78 tmiiGidvsh~~~~-~~~~~si~avvaS~d~~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f~~ 156 (360)
|||||+||+|++++ ....+|++|+|+|+| .. ..+.+..+.|..++|.++++ +++++++|+.|++
T Consensus 172 tmiiGiDv~h~~~~~~~~~~si~~~vas~~-~~-~~~g~~~~~~~~~~~~~~~l-------------~~~~~~~L~~y~~ 236 (393)
T cd02826 172 DIFIGFDVSHPDRRTVNGGPSAVGFAANLS-NH-TFLGGFLYVQPSREVKLQDL-------------GEVIKKCLDGFKK 236 (393)
T ss_pred EEEEEEEeeCCCCCCCCCCCcEEEEEeecC-Cc-cccceEEEEecCccchHHHH-------------HHHHHHHHHHHHH
Confidence 99999999999875 335799999999999 54 22334456777778888777 9999999999999
Q ss_pred hcCC-CCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCC
Q 018166 157 STNF-KPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILP 235 (360)
Q Consensus 157 ~~~~-~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~~~~N~~~ 235 (360)
+++. +|++||||||||||||++.++++|++++++||. +..+|+|++++|+|+||||+|||+.++++ ..+||+|
T Consensus 237 ~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~-~~~~~~p~it~Ivv~Krh~~Rff~~~~~~-----~~~Np~~ 310 (393)
T cd02826 237 STGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE-IEESYRPKLVIIVVQKRHNTRFFPNEKNG-----GVQNPEP 310 (393)
T ss_pred HcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-hCCCCCCCEEEEEEeccccceeccCCCCC-----CCCCCCC
Confidence 9998 999999999999999999999999999999999 77789999999999999999999976542 3489999
Q ss_pred eeeeccccccCCcccEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHH
Q 018166 236 GTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFR 315 (360)
Q Consensus 236 GtvVd~~i~~~~~~dF~L~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r 315 (360)
|||||.++|+|..+||||+||.+.|||+||+||+|++||+++++|+||+|||.|||+|+||++++|+|+|+||||++|+|
T Consensus 311 GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~~~~d~lq~lty~lc~~y~~~~~~vslP~p~~yA~~~a~r 390 (393)
T cd02826 311 GTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNWSLNELEILTYILCLTHQNVYSPISLPAPLYYAHKLAKR 390 (393)
T ss_pred ceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCcccChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 018166 316 ARY 318 (360)
Q Consensus 316 ~~~ 318 (360)
||+
T Consensus 391 ~rn 393 (393)
T cd02826 391 GRN 393 (393)
T ss_pred hcC
Confidence 985
No 7
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.4e-72 Score=550.18 Aligned_cols=290 Identities=33% Similarity=0.519 Sum_probs=270.5
Q ss_pred CEEEEEcCCCCc-hHHHHHHhhhhcCceeeeeeccccccch--hhHHHHHHHHHHhhcCCceeeecccccccCCccCCCC
Q 018166 1 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLN--MQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRP 77 (360)
Q Consensus 1 lvl~ilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~--~~~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~~~~ 77 (360)
||+|++|+.+++ |+.||++++.+..|||||+..+|+.+.. ..+.++|++||||||||.+|.++ +|+ +.
T Consensus 535 mvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~------IPL---k~ 605 (845)
T KOG1042|consen 535 MVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVE------IPL---KG 605 (845)
T ss_pred EEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEe------eec---cc
Confidence 589999999988 9999999999999999999999998654 46788999999999999999986 565 77
Q ss_pred eEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCcccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHHh
Q 018166 78 TIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRS 157 (360)
Q Consensus 78 tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~ 157 (360)
+|+||+||.|.+.. +..|++|+|||+| ..+++|+|.+..|..++|+.+.| +-++..+|++|++.
T Consensus 606 lMiVG~Dv~hd~~~--k~rsvga~VAs~n-~~~tr~fS~v~~~~~~qel~d~L-------------~~~~~~ALr~y~~~ 669 (845)
T KOG1042|consen 606 LMIVGFDVYHDPTL--KGRSVGAFVASMN-NDFTRWFSRVIEQENGQELADNL-------------KVFLAKALRQYYEV 669 (845)
T ss_pred ceEEEEEeecCccc--cCceEEEEEEeec-cchhhhhhheecccCHHHHHHHH-------------HHHHHHHHHHHHHh
Confidence 99999999999753 5689999999999 99999999999999999999988 88999999999999
Q ss_pred cCCCCceEEEeecCCCchhHHHHHHHHHH----HHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCC
Q 018166 158 TNFKPHRIIFYRDGVSEGQFSQVLLHEMN----AIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNI 233 (360)
Q Consensus 158 ~~~~P~~IIiyRdGvsegq~~~v~~~Ei~----~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~~~~N~ 233 (360)
|..+|+|||+|||||++||++++.+.||+ ++.+.+.++..+++|+++||+|+||.++|||....+ +.+||
T Consensus 670 n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a~~~~~~~~rl~~iVV~KrvntR~f~~~~~------~~~NP 743 (845)
T KOG1042|consen 670 NRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYAELSNKEKPRLAVIVVTKRVNTRFFLQGSS------NAQNP 743 (845)
T ss_pred cccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHHHhcCCCCCcEEEEEEEeeccHHHHhhCCc------cccCC
Confidence 99999999999999999999999999999 777777777778999999999999999999997653 58999
Q ss_pred CCeeeeccccccCCcccEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHH
Q 018166 234 LPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAA 313 (360)
Q Consensus 234 ~~GtvVd~~i~~~~~~dF~L~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a 313 (360)
+||||||++||.|.++||||+||...+||..||+|.|++|++++++|.+|+|||.|||+|+||.++||+||||+|||++|
T Consensus 744 ~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~PDkmQrLtfKlCHlYyNW~GtiRVPApCqYAHKLA 823 (845)
T KOG1042|consen 744 PPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSPDKMQRLTFKLCHLYYNWPGTIRVPAPCQYAHKLA 823 (845)
T ss_pred CCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCHHHHHHHHHHHhheeecCCcceeccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhc
Q 018166 314 FRARYYIE 321 (360)
Q Consensus 314 ~r~~~~~~ 321 (360)
+....-+.
T Consensus 824 fLv~qslH 831 (845)
T KOG1042|consen 824 FLVAQSLH 831 (845)
T ss_pred HHHHhhhh
Confidence 88766444
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=8.1e-49 Score=389.04 Aligned_cols=270 Identities=20% Similarity=0.216 Sum_probs=215.8
Q ss_pred CEEEEEcCCC------Cc-hHHHHHHhhhhcCceeeeeeccccccc--hhhHHHHHHHHHHhhcCCceeeecccccccCC
Q 018166 1 MLIIILPDVS------GS-YGRIKRVCETELGIVSQCCQPRQASRL--NMQYFENVALKINVKVGGRNTVLVDAVQKRIP 71 (360)
Q Consensus 1 lvl~ilp~~~------~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~--~~~~~~ni~lkinaKlGG~n~~l~~~~~~~~p 71 (360)
++||++|++. .+ |..||+++ .+.|||||||..+++.+. ..+++.||++|||+|+||+||.|+..
T Consensus 113 ~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~aKlGG~pW~l~~~------ 185 (404)
T cd04659 113 VVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYAKLGGIPWKLDAD------ 185 (404)
T ss_pred EEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHHhcCCCceEcccC------
Confidence 5799999875 45 99999986 689999999999999754 56889999999999999999999753
Q ss_pred ccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCcccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHH
Q 018166 72 LVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELL 151 (360)
Q Consensus 72 ~~~~~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L 151 (360)
...+|||||+|++|+..+ ...+++++...| .+...+ ...+...++.+++- +...+.++++++|
T Consensus 186 --~~~~~~iIGidv~~~~~~---~~~~~~~a~vf~-~~g~g~---~~~~~~~~~~~~~~--------~~~~~~~~l~~~l 248 (404)
T cd04659 186 --SDPADLYIGIGFARSRDG---EVRVTGCAQVFD-SDGLGL---ILRGAPIEEPTEDR--------SPADLKDLLKRVL 248 (404)
T ss_pred --CCCCeEEEEEEEEEcCCC---CEEEEEEEEEEc-CCCCEE---EEecCccCCccccc--------CHHHHHHHHHHHH
Confidence 136799999999999754 122333333344 332121 11122222222100 0112489999999
Q ss_pred HHHHHhcCC-CCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCCCC
Q 018166 152 IAFRRSTNF-KPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRS 230 (360)
Q Consensus 152 ~~f~~~~~~-~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~~~ 230 (360)
+.|++.++. +|+||||||||+. .++|+++|++|+.+++ ++++||+|+|+|++|||..+... ..
T Consensus 249 ~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~~i~~I~V~k~~~~R~f~~~~~~-----~~ 312 (404)
T cd04659 249 EGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----IKVDLVEVIKSGPHRLFRFGTYP-----NG 312 (404)
T ss_pred HHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----ceEEEEEEEecCCcceEEecCCC-----CC
Confidence 999999988 9999999999984 4789999999999874 89999999999999999865431 12
Q ss_pred CCCCCeeeeccccccCCcccEEEeecCCc--------cccccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCC-Ccc
Q 018166 231 GNILPGTVFDTHICHPTEFDFYLNSHAGI--------QGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTR-SVS 301 (360)
Q Consensus 231 ~N~~~GtvVd~~i~~~~~~dF~L~s~~~~--------~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~-~i~ 301 (360)
.||++||+|+. ..++|||++|... +||++|+| |++++...+.|+|++++|.||++|||++. +++
T Consensus 313 ~np~~GT~v~~-----~~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~~~n~~~~~~~ 385 (404)
T cd04659 313 FPPRRGTYVKL-----SDDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSGNTDLEQLASQILGLTKLNWNSFQFYSR 385 (404)
T ss_pred CCCCCceEEEe-----CCCeEEEEecCCccccccCCCCCCCCcEE--EEEccCCCCHHHHHHHHHHHhhcCcCCCCCCCC
Confidence 79999999985 3589999999875 89999999 77888889999999999999999999987 999
Q ss_pred cccchHHHHHHHHHhh
Q 018166 302 IVPPAYYAHLAAFRAR 317 (360)
Q Consensus 302 lPaP~~yA~~~a~r~~ 317 (360)
+|+|++|||++|+...
T Consensus 386 lP~ti~YA~~~a~~~~ 401 (404)
T cd04659 386 LPVTIHYADRVAKLLK 401 (404)
T ss_pred cceEEeHHHHHHHHHh
Confidence 9999999999997654
No 9
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=3.6e-14 Score=140.32 Aligned_cols=242 Identities=18% Similarity=0.174 Sum_probs=151.0
Q ss_pred hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhhcCCceeeecccccccCCccCCCCeEEEEEeecCCCCCC
Q 018166 13 YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGE 92 (360)
Q Consensus 13 Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~~~~tmiiGidvsh~~~~~ 92 (360)
|+.+|+ .+.-||||.|.-.+.++.-..+++|++.|+-+|.+|+||.+.+. . ...+-|+|+||+....+
T Consensus 421 YailKr---ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~---~-----gpvDaivGlDvsr~~~g- 488 (685)
T COG1431 421 YAILKR---LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNG---L-----GPVDAIVGLDVSRVSEG- 488 (685)
T ss_pred HHHHHh---hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeecc---C-----CCccceeeeeeeEEeeC-
Confidence 999997 46679999999998876667889999999999999999988654 1 13479999999987632
Q ss_pred CCCCcEEEEEEeeCC-CCcccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHH--hcC-CCCceEEEe
Q 018166 93 DSSPSIAAVVASMDW-PEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRR--STN-FKPHRIIFY 168 (360)
Q Consensus 93 ~~~~si~avvaS~d~-~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f~~--~~~-~~P~~IIiy 168 (360)
...+-|++...+. ....+|+.....- . ++-+..+.+-+.. ..+ +.-++|++.
T Consensus 489 --n~tV~gct~~f~seg~l~eyy~t~tpa-~---------------------GErl~~~g~yle~~~~~gfe~~n~iV~l 544 (685)
T COG1431 489 --NWTVEGCTSCFVSEGGLEEYYHTVTPA-L---------------------GERLETSGRYLEKMNWRGFESRNLIVTL 544 (685)
T ss_pred --CeEEeeeeEEEeccCceEEeeecccCC-c---------------------cchhhhHHHHHHHHHhhhhhccCeeEEE
Confidence 2333332222220 1223333222111 0 1112111111111 122 345789999
Q ss_pred ecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCeeeeccccccCCc
Q 018166 169 RDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTE 248 (360)
Q Consensus 169 RdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~~~~N~~~GtvVd~~i~~~~~ 248 (360)
|||. +...|++++++.=+++ .....++.+.| .+.+||..... .. |..+..++..+
T Consensus 545 RDG~-------l~~~E~aavkeyg~el----gsn~ev~~i~k-nNp~vf~~e~~-------i~----g~f~~~~~s~~-- 599 (685)
T COG1431 545 RDGK-------LVAGEIAAVKEYGGEL----GSNPEVNRILK-NNPWVFAIEGE-------IW----GAFVRLDGSTV-- 599 (685)
T ss_pred ecCc-------cchHHHHHHHHHhhhc----CCChhhheecc-cCCeEEEecce-------ee----eEEEecCCccc--
Confidence 9994 4457777766544443 34556666655 56668886542 11 22332111100
Q ss_pred ccEEEe---ecCCccccccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCC--cccccchHHHHHHHHHhhhhhc
Q 018166 249 FDFYLN---SHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRS--VSIVPPAYYAHLAAFRARYYIE 321 (360)
Q Consensus 249 ~dF~L~---s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~--i~lPaP~~yA~~~a~r~~~~~~ 321 (360)
-++ +.....||.+|....-. +..++-|-|- |+|.|+-|++..... .+||||+||||++.|.++.-..
T Consensus 600 ---h~~~~~ynpv~~gT~~pi~~r~~--~g~l~~e~i~-lv~dLT~mNys~~~g~~~rlPApvhYaDk~~kl~~~~~~ 671 (685)
T COG1431 600 ---HLCCSPYNPVRRGTPRPIALRRR--DGKLDGELIG-LVHDLTAMNYSNPSGTWSRLPAPVHYADKASKLARYGVS 671 (685)
T ss_pred ---ccccCCCCceecCCCcccccccc--cCccchhhHH-HHHHhhhhccCCCCCceecCCcchhhhHHHHHHHhccCC
Confidence 111 12355799999875433 3345566666 999999999988877 9999999999999999987433
No 10
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=95.81 E-value=0.024 Score=48.06 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=45.4
Q ss_pred cccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHHhhhhhcc
Q 018166 262 TSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIED 322 (360)
Q Consensus 262 TarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r~~~~~~~ 322 (360)
....+=++|+.-...-+.+++..+|+.||+.+.-+...+++|.|+|+|.++ +.|+.+
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~~----~eYi~~ 122 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQA----KEYILP 122 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHHH----HHHccc
Confidence 344555667665555688999999999999999999999999999999884 566554
No 11
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=95.24 E-value=1 Score=40.88 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=32.8
Q ss_pred ccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHH
Q 018166 263 SRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAF 314 (360)
Q Consensus 263 arP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~ 314 (360)
.+|+...+ -..++.|+-.+++-.+| +.-++|.|+..||++|+
T Consensus 166 ~~PiyVS~---Gh~i~l~~A~~~v~~~~-------~~~r~Pep~R~Ad~~sr 207 (208)
T cd06559 166 VKPVYVSP---GHRIDLETAVELVLKCC-------KGYRLPEPTRLADLLSR 207 (208)
T ss_pred CCCEEEcC---CCCcCHHHHHHHHHHHc-------cCCCCCcHHHHHHHHhc
Confidence 56765433 34589999999998877 44789999999999984
No 12
>PRK11617 endonuclease V; Provisional
Probab=95.19 E-value=1.1 Score=41.10 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=36.9
Q ss_pred ccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHHhhhhh
Q 018166 263 SRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYI 320 (360)
Q Consensus 263 arP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r~~~~~ 320 (360)
.+|+...+ -..++.|+-..++-.+|- --|+|.|+..||++|++.+...
T Consensus 170 ~kPiyVS~---Gh~i~l~~A~~~v~~~~~-------~yRlPePlR~Ad~ls~~~~~~~ 217 (224)
T PRK11617 170 CNPLFIST---GHRVSLDSALAWVQRCMK-------GYRLPEPTRWADALASRRPAFV 217 (224)
T ss_pred CCCEEEcC---CCCcCHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHhhhhhhh
Confidence 47775333 345899999999999873 3489999999999998777654
No 13
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=91.82 E-value=2.8 Score=37.87 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHHh
Q 018166 274 ENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 316 (360)
Q Consensus 274 ~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r~ 316 (360)
.+.++.++.-+++..|| +..++|.|+..||.+|++.
T Consensus 176 g~~i~l~sal~l~~~l~-------~~~rlpeptr~ad~~a~~~ 211 (212)
T COG1515 176 GHRISLPSALKLAQRLS-------KGYRLPEPTRLADILAKKR 211 (212)
T ss_pred CCccCHHHHHHHHHHHc-------ccccCCCcccHHHHhhhhc
Confidence 34578999999999877 3388999999999998654
No 14
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=89.23 E-value=4.5 Score=34.90 Aligned_cols=100 Identities=21% Similarity=0.245 Sum_probs=49.4
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCc-ccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 018166 76 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEV-TKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 154 (360)
Q Consensus 76 ~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~-~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f 154 (360)
.|.-|-++|+||-.. .-.++++|.-.| ... ...+-.+..... +-.+|+ ++|.+.|..+
T Consensus 10 ~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~-G~~~k~~YR~f~i~~~--~~~dDy--------------~~M~Evl~RR 68 (155)
T PF08459_consen 10 LPRRIECFDISHIQG----SDTVGSMVVFEN-GKPDKSEYRRFNIKTV--DGGDDY--------------AAMREVLTRR 68 (155)
T ss_dssp --SEEEEEEEEECTT----TCEEEEEEEEET-TEE-GGG-EEEEEE----STT-HH--------------HHHHHHHHHH
T ss_pred CCCEEEEEECcccCC----cccEEEEEEEEC-CccChhhCceEecCCC--CCCcHH--------------HHHHHHHHHH
Confidence 457899999999853 345667666555 321 122223333321 111443 3455555554
Q ss_pred HH----hcCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeec
Q 018166 155 RR----STNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 211 (360)
Q Consensus 155 ~~----~~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~ 211 (360)
.+ ....+|+-|+| || +.||+ .+.++++++++- .+-+|...|+
T Consensus 69 ~~~~~~~~~~lPDLilI--DG-G~gQl--------~aa~~~l~~lgl----~i~viglaK~ 114 (155)
T PF08459_consen 69 FKRLKEEKEPLPDLILI--DG-GKGQL--------NAAKEVLKELGL----NIPVIGLAKN 114 (155)
T ss_dssp HCCCHHHT----SEEEE--SS-SHHHH--------HHHHHHHHCTT--------EEEEESS
T ss_pred HhcccccCCCCCCEEEE--cC-CHHHH--------HHHHHHHHHcCC----CeEEEEEEec
Confidence 43 23468998888 66 34554 366788887743 2556666665
No 15
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=79.68 E-value=6.9 Score=35.42 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHhHhhcCcCCCC-cccccchHHHHHHH
Q 018166 276 RFSADDFQVLTNNLCYTYARCTRS-VSIVPPAYYAHLAA 313 (360)
Q Consensus 276 ~~~~d~lq~lt~~Lc~~~~~~~~~-i~lPaP~~yA~~~a 313 (360)
.++.+..-+++..+| +. .++|.|++.||+++
T Consensus 175 ~i~l~ta~~iv~~~~-------~~~~r~PeP~r~Ad~~t 206 (206)
T PF04493_consen 175 RISLETALEIVLKLC-------KGGYRLPEPTRLADLLT 206 (206)
T ss_dssp SS-HHHHHHHHHHTS-------STTSSS-HHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHc-------CCCCcCCCcchhhhhcC
Confidence 478999999998877 44 68999999999864
No 16
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=75.34 E-value=32 Score=36.11 Aligned_cols=108 Identities=24% Similarity=0.241 Sum_probs=57.0
Q ss_pred eEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCccc-ceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHH-HH
Q 018166 78 TIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIA-FR 155 (360)
Q Consensus 78 tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~-y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~-f~ 155 (360)
.-|-++|+||-.+ .-.|+++|.-.| ....+ .+-.+..... +-.+|+ .+|.+.|.. |.
T Consensus 382 ~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~~--~~~dDy--------------a~m~Evl~RR~~ 440 (574)
T TIGR00194 382 KRIEIFDISHIDG----SQTVGSMVVFED-GKPLKASYRRYNINSI--TGGDDY--------------AAMREVLRRRYS 440 (574)
T ss_pred CEEEEEECCccCC----CcceEEEEEEeC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHHHh
Confidence 7899999999864 346777776555 32221 1111222210 012342 334454433 32
Q ss_pred Hh-c--C-CCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEee--ccccccccc
Q 018166 156 RS-T--N-FKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQK--RHHTRLFPA 219 (360)
Q Consensus 156 ~~-~--~-~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K--~~~~Rff~~ 219 (360)
.. . . .+|+-||| || +.||+. +..+++++++-. ..+.+|...| +|.+++|..
T Consensus 441 r~~~~~~~~~PDLili--DG-GkgQl~--------aa~~~l~~lg~~--~~i~viglaK~~~~~~~i~~~ 497 (574)
T TIGR00194 441 SIQKKNNLPLPDLILI--DG-GKGQLN--------AALEVLKSLGVV--NKPIVIGLAKAKRHETDIFLI 497 (574)
T ss_pred hhccccCCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCCC--CCCcEEEEEecCCCceEEEeC
Confidence 21 1 1 48887777 65 346654 556777776421 1355677777 565666653
No 17
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=68.66 E-value=54 Score=35.07 Aligned_cols=107 Identities=24% Similarity=0.336 Sum_probs=59.0
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCccc-ceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 018166 76 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 154 (360)
Q Consensus 76 ~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~-y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f 154 (360)
.+..|-++|+||-.+ .-.++++|.-.| ....+ .|-.+.+... +.-.+|+ .+|.+.|...
T Consensus 453 ~p~rIE~fDiSh~~G----~~~VasmVvf~~-G~p~k~~YR~f~ik~~-~~~~DD~--------------asM~Evl~RR 512 (691)
T PRK14672 453 IPTLIEGFDISHLGG----KYTVASLICFKN-GAPDTKNYRLFNLRAH-DTRIDDF--------------ASMREAIARR 512 (691)
T ss_pred CCCeEEEEECCccCC----cCceEEEEEEEC-CccChhhCCeeeccCC-CCCCchH--------------HHHHHHHHHH
Confidence 468999999999864 346777777666 32211 1112222211 0002343 3445555443
Q ss_pred HHh---cCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccc
Q 018166 155 RRS---TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 218 (360)
Q Consensus 155 ~~~---~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~ 218 (360)
... ...+|+-||| || +.||+ .+.++++.+++- .+.+|-..|+. ..+|.
T Consensus 513 ~~r~~~~~~~PDLilI--DG-GkgQl--------~aa~~vl~elgl----~i~vigLaKr~-e~i~~ 563 (691)
T PRK14672 513 YTHTPEGYTLPDLILV--DG-GIGHV--------SAAQHVLDALGL----SIPLVGLAKRA-EELFI 563 (691)
T ss_pred hhcccccCCCCCEEEE--eC-CHHHH--------HHHHHHHHHcCC----CCcEEEEEecc-cEEEe
Confidence 332 1258988877 55 23554 366777777742 46678888865 44554
No 18
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=64.60 E-value=85 Score=32.58 Aligned_cols=106 Identities=21% Similarity=0.324 Sum_probs=56.8
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCccc-ceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHH-
Q 018166 76 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIA- 153 (360)
Q Consensus 76 ~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~-y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~- 153 (360)
.+.-|-|+|+||-.+ .-.++++|.-.| ....+ .+-.+.... .+-.+|+ .+|.+.|..
T Consensus 365 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~p~k~~YR~f~Ik~--~~~~dDy--------------~~m~Evl~RR 423 (519)
T PRK12306 365 PPNVIECFDISHLSG----TSTVGSMVQFRN-GKPDKKNYRRFKIKT--VEGIDDF--------------ASIAEVVRRR 423 (519)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEeC-CccChhhcCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 456799999999753 346777776555 32211 111222221 0112343 334455433
Q ss_pred HHHhc---CCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccc
Q 018166 154 FRRST---NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 218 (360)
Q Consensus 154 f~~~~---~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~ 218 (360)
|.... +.+|+-||| || +-||+. +..+++.+++- .+.+|...|+. .++|.
T Consensus 424 ~~r~~~~~~~~PDLilI--DG-GkgQl~--------aa~~~l~elg~----~i~viglaK~~-e~i~~ 475 (519)
T PRK12306 424 YSRLLEENSELPDLIVI--DG-GKGQLS--------SAFKELRKLGL----KIPLISIAKRE-EEIYV 475 (519)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEcCc-eEEEe
Confidence 33211 248987777 65 346654 55677777642 46678877854 44544
No 19
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=63.45 E-value=57 Score=34.66 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=56.6
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCccc-ceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHH-
Q 018166 76 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIA- 153 (360)
Q Consensus 76 ~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~-y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~- 153 (360)
.|.-|-++|+||-.+ .-.++++|.-.| ....+ .+-.+.+.. .+-.+|+ .+|.+.|..
T Consensus 395 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~Ik~--~~~~DDy--------------a~M~Evl~RR 453 (624)
T PRK14669 395 LPSRIECFDISHIQG----AETVASMVVWED-GKMKKSDYRKFIIKT--VVGVDDF--------------ASMREVVTRR 453 (624)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 457899999999753 345677776555 32211 111222221 0012343 234444433
Q ss_pred HHHh--c-CCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccc
Q 018166 154 FRRS--T-NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 218 (360)
Q Consensus 154 f~~~--~-~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~ 218 (360)
|... + ..+|+-||| || +.||+. +.++++.+++-. .+.+|...|+. .++|.
T Consensus 454 ~~r~~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~elgl~---~i~vigLaK~~-e~i~~ 506 (624)
T PRK14669 454 YSRLQEEKQPMPGLVLI--DG-GLGQLH--------AAAEALEAIGIT---DQPLASIAKRE-EIIYV 506 (624)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCCC---CCcEEEEecCC-eEEEC
Confidence 3321 1 248987777 65 345554 556777777421 25677777865 44554
No 20
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=63.31 E-value=1e+02 Score=32.45 Aligned_cols=110 Identities=21% Similarity=0.245 Sum_probs=57.8
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCccc-ceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 018166 76 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 154 (360)
Q Consensus 76 ~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~-y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f 154 (360)
.|.-|-++|+||-.+ .-.++++|.-.| ....+ .+-.+..........+|+ .+|.+.|...
T Consensus 357 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~ik~~~~~~~DD~--------------a~M~Evl~RR 417 (574)
T PRK14670 357 LPKTIEGFDIAHLNG----QKTVASLVTFKM-GKPFKDGYRVYKINSLLKGEIDDF--------------KAIKEVISRR 417 (574)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeeccCCCCCCCCHH--------------HHHHHHHHHH
Confidence 457899999999864 345777776555 32221 122222221100002343 3445555443
Q ss_pred HHh--c--CCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccc
Q 018166 155 RRS--T--NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 218 (360)
Q Consensus 155 ~~~--~--~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~ 218 (360)
... . +.+|+-||| || +.||+. +..+++.+++- ...+.+|...|+. .++|.
T Consensus 418 ~~r~~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~~lg~--~~~i~v~gLaK~~-e~i~~ 471 (574)
T PRK14670 418 YSKLINEQLELPNLILI--DG-GKGQLN--------AAYSILKGLKI--ENKVKVCALAKKE-ETIFL 471 (574)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC--CCCceEEEEecCC-eEEEe
Confidence 322 1 258987777 65 345544 55677777642 2236678887855 33443
No 21
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=60.85 E-value=1.1e+02 Score=32.89 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=54.7
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCccc-ceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 018166 76 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 154 (360)
Q Consensus 76 ~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~-y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f 154 (360)
.+.-|-++|+||-.. ...++++|.-.| ....+ .|-.+.+... + -+|+ .+|.+.+...
T Consensus 471 ~p~rIE~~DiSh~~G----~~~v~~mVvf~~-G~p~k~~YR~f~i~~~--~-~dD~--------------~~m~ev~~RR 528 (694)
T PRK14666 471 PPHRIEAVDVSHTGG----RNTRVGMVVFED-GKPARDAYRTYAFEDG--E-GDDY--------------GTLAAWAGRR 528 (694)
T ss_pred CCCEEEEEECcccCC----cCceEEEEEEEC-CccChhhCCeeeCCCC--C-CChH--------------HHHHHHHHHH
Confidence 467899999999863 345677776565 33222 1112222211 1 1343 3344555443
Q ss_pred HHhcCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEee
Q 018166 155 RRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQK 210 (360)
Q Consensus 155 ~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K 210 (360)
......+|+-|+| || +.||+. +..+++.+++.+ ..+.+|...|
T Consensus 529 ~~~~~~~PDLili--DG-G~gQl~--------aa~~~l~e~g~~--~~~~v~~laK 571 (694)
T PRK14666 529 VESGPPWPDLLLV--DG-GRGQLA--------AVVRALEEAGMG--GLFAVASIAK 571 (694)
T ss_pred hcCCCCCCCEEEE--cC-CHHHHH--------HHHHHHHHcCCC--CCccEEEEec
Confidence 3322358887777 55 346654 556777777532 1366777777
No 22
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=60.75 E-value=99 Score=32.49 Aligned_cols=106 Identities=23% Similarity=0.249 Sum_probs=57.9
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCccc-ceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 018166 76 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 154 (360)
Q Consensus 76 ~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~-y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f 154 (360)
.+.-|-++|+||-.+ .-.++++|.-.| ....+ .+-.+..... +-.+|+ .+|.+.|...
T Consensus 360 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~~--~~~dD~--------------~~m~Evl~RR 418 (567)
T PRK14667 360 LPERIEGFDISHFYG----EFTVGSCVVWED-GSMNKKEYRRYKIKTV--DGIDDY--------------ASLREVLTRR 418 (567)
T ss_pred CCCeEEEEECcccCC----CcceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 467899999999753 346777777666 32221 1112222211 112343 3445555443
Q ss_pred H-Hh---cCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccc
Q 018166 155 R-RS---TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 218 (360)
Q Consensus 155 ~-~~---~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~ 218 (360)
. .. ++.+|+-||| || +.||+. +..+++++++- .+.+|...|+. .++|.
T Consensus 419 ~~r~~~~~~~~PDLili--DG-GkgQl~--------aa~~~l~~lg~----~i~v~glaK~~-e~i~~ 470 (567)
T PRK14667 419 ARRYKEGENPMPDLWLI--DG-GKGQLS--------VGIEVRDRLGL----NIKVFSLAKKE-EILYT 470 (567)
T ss_pred hhhccccCCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEecC-cEEEc
Confidence 3 32 1248988777 65 345544 56677777743 35577777754 44543
No 23
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=59.53 E-value=1e+02 Score=32.82 Aligned_cols=106 Identities=23% Similarity=0.238 Sum_probs=57.2
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCccc-ceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 018166 76 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 154 (360)
Q Consensus 76 ~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~-y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f 154 (360)
.|.-|-|+|+||-.+ .-.++++|.-.| ....+ -|-.+..... .-.+|+ .+|.+.|...
T Consensus 414 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~ik~~--~~~dDy--------------~~m~Evl~RR 472 (621)
T PRK14671 414 LPRRIECFDNSHFQG----TDYVSSMVCFVD-GKPKKSDYRKFKLRSF--EGSDDY--------------AAMREVVTRR 472 (621)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 457899999999863 346777776555 32211 1111222211 012343 3445555443
Q ss_pred H-Hh---cCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccc
Q 018166 155 R-RS---TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 218 (360)
Q Consensus 155 ~-~~---~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~ 218 (360)
. .. ++.+|+-||| || +.||+. +..+++.+++- .+.+|-..|+. .++|.
T Consensus 473 ~~r~~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~~lg~----~i~viglaK~~-e~i~~ 524 (621)
T PRK14671 473 YSGSLAEELPLPDLIVI--DG-GKGQVN--------SAWKVLQELGL----SVPVIGLAKRL-EEIFT 524 (621)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEecc-cEEEe
Confidence 3 31 1258988877 65 345554 55677777642 46677777843 44554
No 24
>PRK00766 hypothetical protein; Provisional
Probab=58.16 E-value=20 Score=32.09 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHHh
Q 018166 275 NRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 316 (360)
Q Consensus 275 ~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r~ 316 (360)
.+++.++..+++-.+|.- -++|.|+..||++|...
T Consensus 152 ~gi~l~~A~~lv~~~~~~-------~riPEPlR~Ahlia~~~ 186 (194)
T PRK00766 152 AGIDPETAAEIVRLTSTR-------SLIPEPLRLAHLIASGV 186 (194)
T ss_pred cCCCHHHHHHHHHHhccC-------CCCchhhHHHHHHHHHh
Confidence 468899999999988842 37999999999999443
No 25
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=58.03 E-value=97 Score=32.76 Aligned_cols=100 Identities=24% Similarity=0.265 Sum_probs=53.6
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCccc-ceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHH-
Q 018166 76 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIA- 153 (360)
Q Consensus 76 ~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~-y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~- 153 (360)
.+.-|-++|+||-.+ .-.|+++|.-.| ....+ -+-.+..... +-.+|+ .+|.+.|..
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~~--~~~dDy--------------a~m~Evl~RR 440 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFED-GGPDKSEYRRYNIKGV--TGGDDY--------------AAMREVLTRR 440 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 467899999999753 346777776555 32211 1111222211 112332 344555543
Q ss_pred HHHh---cCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeec
Q 018166 154 FRRS---TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 211 (360)
Q Consensus 154 f~~~---~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~ 211 (360)
|... .+.+|+-||| || +.||+. +..+++.+++- .+.+|...|.
T Consensus 441 ~~~~~~~~~~~PDLili--DG-GkgQl~--------~a~~~l~~lg~----~i~v~glaK~ 486 (598)
T PRK00558 441 YSRLLKEFGPLPDLILI--DG-GKGQLN--------AAKEVLEELGL----DIPVVGLAKG 486 (598)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHCCC----CCcEEEEEec
Confidence 3322 2358988877 65 346654 55677777643 3556666663
No 26
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=56.97 E-value=7.1 Score=32.21 Aligned_cols=31 Identities=23% Similarity=0.121 Sum_probs=21.9
Q ss_pred hhcCcCCCCcccccchHHHHHHHHHhhhhhc
Q 018166 291 YTYARCTRSVSIVPPAYYAHLAAFRARYYIE 321 (360)
Q Consensus 291 ~~~~~~~~~i~lPaP~~yA~~~a~r~~~~~~ 321 (360)
|.|.-.-.+--+|+|+++||++++|......
T Consensus 12 fGYA~~ET~~~MPl~i~lAh~L~~~l~~~R~ 42 (120)
T PF02772_consen 12 FGYACDETPELMPLPIVLAHRLARRLAEVRK 42 (120)
T ss_dssp EEEEETTSTTSS-HHHHHHHHHHHHHHHHHH
T ss_pred EeeEcCCCCccCChHHHHHHHHHHHHHHHHh
Confidence 3444445677799999999999988765443
No 27
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=54.98 E-value=14 Score=23.00 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCCCceEEE
Q 018166 149 ELLIAFRRSTNFKPHRIIF 167 (360)
Q Consensus 149 ~~L~~f~~~~~~~P~~IIi 167 (360)
..+..|.+.||++|..|-|
T Consensus 15 ~rv~~f~~~ngRlPnyV~i 33 (33)
T PF09373_consen 15 SRVNNFYESNGRLPNYVSI 33 (33)
T ss_pred HHHHHHHHHcCCCCCeeeC
Confidence 5668899999999998754
No 28
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=43.60 E-value=1.7e+02 Score=25.73 Aligned_cols=66 Identities=12% Similarity=0.203 Sum_probs=39.9
Q ss_pred CccchhHHHHHHHHHHHHhc---CCC--CceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEe
Q 018166 139 RGLVHGGMIRELLIAFRRST---NFK--PHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQ 209 (360)
Q Consensus 139 ~~~~~~~~~~~~L~~f~~~~---~~~--P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~ 209 (360)
..+.+...+..+++.|.... ... +..|||+-||...+.- . -.+.|.++.+++....+..+.+|.|-
T Consensus 80 G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~-~----~~~~i~~a~~~l~~~~~i~i~~v~vG 150 (199)
T cd01457 80 GGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKD-A----VERVIIKASDELDADNELAISFLQIG 150 (199)
T ss_pred CcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHH-H----HHHHHHHHHHhhccccCceEEEEEeC
Confidence 34456777777877776531 234 4889999999876421 1 12455666666544434567777663
No 29
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=40.16 E-value=2.7e+02 Score=29.38 Aligned_cols=103 Identities=22% Similarity=0.226 Sum_probs=54.0
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCccc-ceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 018166 76 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 154 (360)
Q Consensus 76 ~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~-y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f 154 (360)
.+.-|-++|+||-.+ .-.++++|.-.| ....+ .+-.+.... + .+|+ ..+.+++...+..+
T Consensus 374 ~p~rIE~fDiSh~~G----~~~V~s~Vvf~~-G~~~k~~YR~f~i~~-~---~dD~----------~~m~Evl~RR~~r~ 434 (577)
T PRK14668 374 RPERIEGFDVSHAQG----RAVVGSNVCFVD-GSAETADYRRKKLTE-R---NDDY----------ANMRELVRWRAERA 434 (577)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEEC-CccCHHHcCeecCCC-C---CChH----------HHHHHHHHHHHHhh
Confidence 467899999999753 346777776555 32221 111222221 1 2343 01233333333333
Q ss_pred HHhc--CCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecc
Q 018166 155 RRST--NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRH 212 (360)
Q Consensus 155 ~~~~--~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~ 212 (360)
.+.. +.+|+-||| || +.||+. +..+++.+++- .+.+|...|+.
T Consensus 435 ~~~~~~~~~PDLili--DG-G~gQl~--------aa~~~l~elg~----~i~v~glaK~~ 479 (577)
T PRK14668 435 VEGRDDRPDPDLLLI--DG-GDGQLG--------AARDALAETGW----DVPAIALAKAE 479 (577)
T ss_pred hccccCCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEcCC
Confidence 2211 258987777 55 345543 56677777743 35577777743
No 30
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=38.68 E-value=21 Score=34.74 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=25.4
Q ss_pred hHhhcCcCCCCcccccchHHHHHHHHHhhhhhc
Q 018166 289 LCYTYARCTRSVSIVPPAYYAHLAAFRARYYIE 321 (360)
Q Consensus 289 Lc~~~~~~~~~i~lPaP~~yA~~~a~r~~~~~~ 321 (360)
+-|.|...-.+.-+|+|++|||++++|...+..
T Consensus 125 imFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk 157 (388)
T COG0192 125 IMFGYACNETPELMPLPISLAHRLLRRLAEVRK 157 (388)
T ss_pred eEeeeecCCcccccChHHHHHHHHHHHHHHHHh
Confidence 445566666778899999999999988866433
No 31
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=36.98 E-value=3.7e+02 Score=28.36 Aligned_cols=106 Identities=24% Similarity=0.287 Sum_probs=54.2
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCccc-ceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHH-HH
Q 018166 76 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELL-IA 153 (360)
Q Consensus 76 ~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~-y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L-~~ 153 (360)
.+.-|-++|+||.... -.++++|...| ....+ .+-.+.... +-.+|+ .. |.+.| +.
T Consensus 378 ~p~rIE~~D~Sh~~g~----~~V~smvvf~~-g~~~k~~YRry~i~~---~~~dDy-------------a~-m~evl~RR 435 (581)
T COG0322 378 APYRIECFDISHIQGE----DTVGSMVVFED-GGPSKKDYRRYNIKI---TGGDDY-------------AS-MREVLTRR 435 (581)
T ss_pred CceeEEEeecCccccc----cceeEEEEEcC-CCCChhhcccccccC---CCCchH-------------HH-HHHHHHHH
Confidence 4678999999998642 34555554444 22111 111111110 002232 33 33444 44
Q ss_pred HHHhc-CCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccc
Q 018166 154 FRRST-NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 218 (360)
Q Consensus 154 f~~~~-~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~ 218 (360)
|...- ..+|+-|+| || +.||+. +.++++.+++-. .+ +|.+.|+...-|++
T Consensus 436 ~~~~~~~~~Pdli~i--DG-GkgQl~--------~a~~vl~~l~~~--~~--viglaK~~~~~~~~ 486 (581)
T COG0322 436 YSRLLKEELPDLILI--DG-GKGQLN--------AAKEVLKELGLD--IP--VIGLAKGEEELLLP 486 (581)
T ss_pred hhhccccCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCCC--cc--EEEEEecCceeEec
Confidence 55543 389966665 55 345554 567777777432 22 78888876633333
No 32
>COG4634 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.98 E-value=82 Score=25.51 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=29.0
Q ss_pred CCCceEEEeecC-CCchhHHHHHHHHHHHHHHHHHh
Q 018166 160 FKPHRIIFYRDG-VSEGQFSQVLLHEMNAIRQACAS 194 (360)
Q Consensus 160 ~~P~~IIiyRdG-vsegq~~~v~~~Ei~~i~~a~~~ 194 (360)
..|.+|+..|-| +|..+...+...+++++.+-+.+
T Consensus 66 G~Ppki~wLr~gNvs~~~ie~l~~~~l~~~~e~le~ 101 (113)
T COG4634 66 GSPPKIVWLRCGNVSTREIEILIRSVLRAIGEELES 101 (113)
T ss_pred CCCCeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 467788888988 99999999998888888877664
No 33
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=33.43 E-value=77 Score=25.70 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=31.9
Q ss_pred EEEEEcCCCCc--hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhh
Q 018166 2 LIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 54 (360)
Q Consensus 2 vl~ilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaK 54 (360)
+++.+.+...+ |...|...+.+.||.+..+.... .....-+...+.++|.-
T Consensus 33 aii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 33 AIILVGDDPASISYVRSKQKAAEKLGIEFELIELPE--DISEEELLELIEKLNED 85 (117)
T ss_dssp EEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-T--TSSHHHHHHHHHHHHH-
T ss_pred EEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCC--CcCHHHHHHHHHHHhCC
Confidence 33444444333 99999888899999999998742 12345566777888765
No 34
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=32.59 E-value=40 Score=30.06 Aligned_cols=39 Identities=21% Similarity=0.124 Sum_probs=26.4
Q ss_pred EEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHH
Q 018166 270 VLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFR 315 (360)
Q Consensus 270 vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r 315 (360)
|.....+++.++..+++...+ .--++|.|+..||++|.-
T Consensus 142 vyv~~~Gi~~~~A~~li~~~t-------~~g~iPEPLRvAhliA~~ 180 (187)
T PF01949_consen 142 VYVQSWGIDLEEARELIRRTT-------LHGKIPEPLRVAHLIASA 180 (187)
T ss_dssp EEEEEESS-HHHHHHHHHHC--------SSSSS-HHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHh-------ccCCCcccHHHHHHHHHH
Confidence 333445788888888877654 334799999999999943
No 35
>PF08795 DUF1796: Putative papain-like cysteine peptidase (DUF1796); InterPro: IPR014903 The proteins in this entry are uncharacterised; but are related to papain-like cysteine peptidases.
Probab=29.73 E-value=2.5e+02 Score=24.25 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEee-----cCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEE
Q 018166 145 GMIRELLIAFRRSTNFKPHRIIFYR-----DGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVV 208 (360)
Q Consensus 145 ~~~~~~L~~f~~~~~~~P~~IIiyR-----dGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv 208 (360)
+-+..+++.|.+.- ..+++|++.| +|..+ -+|+..+.++++++.++ ...+.+|.+
T Consensus 102 ~k~~rRi~Rf~~~l-~~~~~ilFvr~~~~~~~~~~-------~e~~~eL~~~L~~~~~~-~~~~l~~~~ 161 (167)
T PF08795_consen 102 EKYDRRIDRFLKKL-ESSKRILFVRTRIAETGGED-------YEEAKELLQVLSELVKG-NFFLLLLNH 161 (167)
T ss_pred HHHHHHHHHHHHHH-hCCCcEEEEEEccccCCCCC-------HHHHHHHHHHHHHHcCC-CceEEEEEc
Confidence 33455666665533 4557999999 66533 36788888888887554 445555443
No 36
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=27.09 E-value=2e+02 Score=30.27 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=47.2
Q ss_pred EEEEEcCC---CCc-hHHHHHHhhhhcCceeeeeeccccccc-hhhHHHHHHHHHHhhcCCceeeeccc
Q 018166 2 LIIILPDV---SGS-YGRIKRVCETELGIVSQCCQPRQASRL-NMQYFENVALKINVKVGGRNTVLVDA 65 (360)
Q Consensus 2 vl~ilp~~---~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~-~~~~~~ni~lkinaKlGG~n~~l~~~ 65 (360)
+|+++|+. ..- |+.++.+ ...++++|....+-+... .-.++.|+.-+.-.|++|-+|.+...
T Consensus 239 illvlp~~~~y~~~~~~pl~sY--~~le~~srnev~dil~nrk~L~~idn~l~~~v~~lr~~pw~l~~d 305 (685)
T COG1431 239 ILLVLPEDVLYNTPLYYPLKSY--LILEIPSRNEVYDILSNRKLLFYIDNLLVQFVSKLRGKPWILNVD 305 (685)
T ss_pred eEEECCccccccccccchHHHH--HhhcchhhhhhhhHhhhhhhhhHHHHHHHHHHHHhccCCCccccC
Confidence 45677773 233 8899965 577899998888766554 34678999999999999999988654
No 37
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.30 E-value=1.4e+02 Score=28.35 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=33.9
Q ss_pred EEEEEcCCCCc--hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhh
Q 018166 2 LIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 54 (360)
Q Consensus 2 vl~ilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaK 54 (360)
.++.+.++..+ |.+.|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 35 aii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~D 87 (281)
T PRK14183 35 AVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPS--TISQKEILETIAMMNNN 87 (281)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 34445544433 99999888899999998887642 11223366777788754
No 38
>PTZ00104 S-adenosylmethionine synthase; Provisional
Probab=24.19 E-value=55 Score=32.47 Aligned_cols=28 Identities=18% Similarity=0.005 Sum_probs=21.3
Q ss_pred hhcCcCCCCcccccchHHHHHHHHHhhh
Q 018166 291 YTYARCTRSVSIVPPAYYAHLAAFRARY 318 (360)
Q Consensus 291 ~~~~~~~~~i~lPaP~~yA~~~a~r~~~ 318 (360)
|.|.---.+--+|+|++|||++++|...
T Consensus 132 fGYA~~ET~~~MPlpi~lAh~L~~~l~~ 159 (398)
T PTZ00104 132 FGYATDETEELMPLTHELATKLAKRLSE 159 (398)
T ss_pred eeeecCCCcccCCcHHHHHHHHHHHHHH
Confidence 4444444677799999999999988754
No 39
>PRK05250 S-adenosylmethionine synthetase; Validated
Probab=23.81 E-value=56 Score=32.31 Aligned_cols=30 Identities=20% Similarity=0.093 Sum_probs=21.9
Q ss_pred hhcCcCCCCcccccchHHHHHHHHHhhhhh
Q 018166 291 YTYARCTRSVSIVPPAYYAHLAAFRARYYI 320 (360)
Q Consensus 291 ~~~~~~~~~i~lPaP~~yA~~~a~r~~~~~ 320 (360)
|.|..--.+--+|+|+++||++++|.....
T Consensus 123 fGYA~~ET~~~MPl~i~lAh~l~~~l~~~R 152 (384)
T PRK05250 123 FGYACNETPELMPLPITLAHRLVRRLAEVR 152 (384)
T ss_pred eeeecCCCcccCChHHHHHHHHHHHHHHHH
Confidence 344444456779999999999998876543
No 40
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=23.79 E-value=42 Score=25.38 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=10.9
Q ss_pred CCCCceEEEeecCCCchhHH
Q 018166 159 NFKPHRIIFYRDGVSEGQFS 178 (360)
Q Consensus 159 ~~~P~~IIiyRdGvsegq~~ 178 (360)
..-|+++|..||++|..+++
T Consensus 8 Efdp~htvLLrD~~s~e~Ld 27 (79)
T PF09469_consen 8 EFDPEHTVLLRDYQSGEELD 27 (79)
T ss_dssp T--TTSEEEES-SS---B--
T ss_pred ccCcceEEEeecCCCCCccc
Confidence 35699999999999987664
No 41
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.44 E-value=2.1e+02 Score=27.46 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=34.2
Q ss_pred EEEEEcCCCCc--hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhh
Q 018166 2 LIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 54 (360)
Q Consensus 2 vl~ilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaK 54 (360)
.++.+.++..+ |.+.|...+.+.||.+..+.... .....-+...+.++|.-
T Consensus 36 aiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 36 IVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPS--TISESSLIEKINELNND 88 (294)
T ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 34444444333 99999888899999999988752 11233466777788765
No 42
>PLN02243 S-adenosylmethionine synthase
Probab=22.15 E-value=62 Score=31.99 Aligned_cols=28 Identities=14% Similarity=0.015 Sum_probs=21.0
Q ss_pred hhcCcCCCCcccccchHHHHHHHHHhhh
Q 018166 291 YTYARCTRSVSIVPPAYYAHLAAFRARY 318 (360)
Q Consensus 291 ~~~~~~~~~i~lPaP~~yA~~~a~r~~~ 318 (360)
|.|.-.-.+--+|+|+++||++++|...
T Consensus 127 fGYA~~ET~e~MPlpi~lAh~l~~~l~~ 154 (386)
T PLN02243 127 FGYATDETPELMPLTHVLATKLGARLTE 154 (386)
T ss_pred eeeecCCCcccCChHHHHHHHHHHHHHH
Confidence 3444444677799999999999987654
No 43
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.62 E-value=2e+02 Score=27.33 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=34.1
Q ss_pred EEEEEcCCCCc--hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhh
Q 018166 2 LIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 54 (360)
Q Consensus 2 vl~ilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaK 54 (360)
.++.+.++..+ |.+.|...+.+.||.+..+.... .....-+...+.++|.-
T Consensus 30 aii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 30 ATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPG--DATTRTVLERIRRLNED 82 (279)
T ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 34444444443 99999888899999999888753 11233455777787765
No 44
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=21.36 E-value=61 Score=25.01 Aligned_cols=14 Identities=57% Similarity=1.023 Sum_probs=11.7
Q ss_pred CCCceEEEeecCCC
Q 018166 160 FKPHRIIFYRDGVS 173 (360)
Q Consensus 160 ~~P~~IIiyRdGvs 173 (360)
..|++|.|||.|-.
T Consensus 3 ~k~k~i~~~rNGD~ 16 (89)
T smart00537 3 VKPKRIRFYRNGDR 16 (89)
T ss_pred ccceEEEEEeCCCC
Confidence 47999999999943
No 45
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.26 E-value=2.3e+02 Score=26.85 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=40.4
Q ss_pred EEEEEcCCCCc--hHHHHHHhhhhcCceeeeeecc-ccccchhhHHHHHHHHHHhh--cCCceeee
Q 018166 2 LIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINVK--VGGRNTVL 62 (360)
Q Consensus 2 vl~ilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~-t~~k~~~~~~~ni~lkinaK--lGG~n~~l 62 (360)
.++.+.++..+ |..+|...+.+.||.+..+... .+ ...-+..++.++|.. ..|++-.+
T Consensus 37 ~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~~l~~~i~~Ln~d~~v~Gi~Vql 99 (283)
T PRK14192 37 ATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQET---TTEQLLAKIEELNANPDVHGILLQH 99 (283)
T ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeC
Confidence 34445554443 9999998899999999998873 22 233367888888876 66776543
No 46
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.08 E-value=2e+02 Score=27.51 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=34.1
Q ss_pred EEEEEcCCCCc--hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhh
Q 018166 2 LIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 54 (360)
Q Consensus 2 vl~ilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaK 54 (360)
.++.+.++..+ |.+.|...+.+.||.+..+.... .....-+..++.++|.-
T Consensus 30 aiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~t~~el~~~I~~lN~d 82 (287)
T PRK14181 30 AVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPS--DATLSDILKLIHRLNND 82 (287)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 34444544443 99999888899999998888743 11233455777788753
No 47
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.03 E-value=2e+02 Score=27.49 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=34.6
Q ss_pred EEEEEcCCCCc--hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhh
Q 018166 2 LIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 54 (360)
Q Consensus 2 vl~ilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaK 54 (360)
.++.+.++..+ |.+.|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 33 aii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 33 RVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPE--STSQEELLELIARLNAD 85 (287)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 34445554443 99999888899999999888752 11233456777788874
No 48
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=20.87 E-value=2e+02 Score=26.79 Aligned_cols=37 Identities=30% Similarity=0.548 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhh
Q 018166 149 ELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASL 195 (360)
Q Consensus 149 ~~L~~f~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~ 195 (360)
++|..|-...+..|++||+.=|. .+.+..+.++|...
T Consensus 165 ~~L~~fL~~~~~~pk~IIfIDD~----------~~nl~sv~~a~k~~ 201 (252)
T PF11019_consen 165 EVLKYFLDKINQSPKKIIFIDDN----------KENLKSVEKACKKS 201 (252)
T ss_pred HHHHHHHHHcCCCCCeEEEEeCC----------HHHHHHHHHHHhhC
Confidence 55666667788999999998664 57888999999974
No 49
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.14 E-value=2.1e+02 Score=27.21 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=33.9
Q ss_pred EEEEEcCCCCc--hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhh
Q 018166 2 LIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 54 (360)
Q Consensus 2 vl~ilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaK 54 (360)
.++.+.++..+ |.+.|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 34 aii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~t~~~l~~~I~~lN~D 86 (282)
T PRK14166 34 AVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNE--NTTQNELLALINTLNHD 86 (282)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 34444444333 99999888899999999998753 11223355777788763
Done!