Query 018166
Match_columns 360
No_of_seqs 132 out of 915
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:58:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yhb_A QDE-2, post-transcripti 100.0 6.4E-94 2.2E-98 713.0 18.0 338 1-360 81-437 (437)
2 4f3t_A Protein argonaute-2; hy 100.0 1.6E-90 5.4E-95 738.2 30.2 340 1-360 519-861 (861)
3 4f1n_A Kpago; argonaute, RNAI, 100.0 3E-88 1E-92 723.1 26.0 341 1-360 683-1046(1046)
4 2yha_A Post-transcriptional ge 100.0 4.6E-77 1.6E-81 584.6 19.8 289 1-360 81-388 (388)
5 1yvu_A Hypothetical protein AQ 100.0 8.7E-62 3E-66 505.5 28.6 265 1-322 419-695 (706)
6 3ho1_A Argonaute; argonaute, p 100.0 6.7E-56 2.3E-60 455.1 26.3 259 1-318 405-669 (685)
7 1u04_A Argonaute, hypothetical 100.0 5.2E-56 1.8E-60 462.7 24.1 263 1-322 475-758 (771)
8 2w42_A PIWI, putative uncharac 100.0 1.7E-53 5.9E-58 422.5 18.8 274 2-322 103-407 (427)
9 4g0x_A Protein argonaute 1; MI 99.6 1.6E-16 5.4E-21 135.2 4.4 62 1-62 85-147 (147)
10 4g0o_A Protein argonaute 5; MI 99.6 1.1E-16 3.6E-21 135.0 3.2 62 1-62 78-139 (139)
11 4g0m_A Protein argonaute 2; MI 99.6 2.2E-16 7.6E-21 134.7 4.1 62 1-62 89-150 (150)
12 3luc_A Protein argonaute-2; MI 99.6 1.4E-15 4.9E-20 127.9 4.8 58 1-59 80-138 (138)
13 3goc_A Endonuclease V; alpha-b 90.5 2 6.7E-05 38.4 10.4 44 263-316 180-223 (237)
14 2w36_A Endonuclease V; hypoxan 88.4 5.4 0.00019 35.3 11.6 47 263-318 176-222 (225)
15 2nrr_A Uvrabc system protein C 74.0 29 0.001 28.8 10.1 96 77-211 17-114 (159)
16 3ga2_A Endonuclease V; alpha-b 61.4 13 0.00046 33.2 5.9 52 262-322 184-235 (246)
17 3qbz_A DDK kinase regulatory s 59.0 3.8 0.00013 34.2 1.7 62 149-210 46-116 (160)
18 2nrt_A Uvrabc system protein C 59.0 55 0.0019 28.7 9.3 95 77-211 22-119 (220)
19 2qh9_A UPF0215 protein AF_1433 44.3 17 0.00058 31.0 3.5 34 276-316 142-175 (184)
20 3c65_A Uvrabc system protein C 24.4 2.8E+02 0.0096 24.2 8.1 102 77-211 14-118 (226)
21 1nyc_A Staphostatin B, cystein 24.0 56 0.0019 24.2 2.9 21 251-271 89-110 (111)
22 3s82_A S-adenosylmethionine sy 23.8 28 0.00095 33.2 1.5 28 291-318 143-170 (407)
23 3iml_A S-adenosylmethionine sy 23.4 29 0.00099 33.0 1.5 28 291-318 131-158 (399)
24 1p7l_A S-adenosylmethionine sy 22.4 31 0.0011 32.6 1.5 28 291-318 123-150 (383)
25 3nqi_A Putative lipoprotein; s 21.8 48 0.0017 29.5 2.6 23 147-169 196-219 (246)
26 4b4u_A Bifunctional protein fo 21.8 1E+02 0.0034 28.4 4.9 56 2-59 57-116 (303)
27 2p02_A S-adenosylmethionine sy 21.7 33 0.0011 32.6 1.5 28 291-318 140-167 (396)
28 3so4_A Methionine-adenosyltran 21.5 33 0.0011 32.7 1.5 28 291-318 144-171 (415)
29 3e11_A Predicted zincin-like m 21.0 32 0.0011 26.9 1.2 14 158-171 62-75 (114)
30 1shu_X Anthrax toxin receptor 20.1 2.8E+02 0.0096 21.9 7.1 40 138-177 79-119 (182)
No 1
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=6.4e-94 Score=713.01 Aligned_cols=338 Identities=34% Similarity=0.599 Sum_probs=240.4
Q ss_pred CEEEEEcCCCCc-hHHHHHHhhhhcCceeeeeeccccccchhh--HHHHHHHHHHhhcCCceeeecccccccCCccCCCC
Q 018166 1 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQ--YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRP 77 (360)
Q Consensus 1 lvl~ilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~--~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~~~~ 77 (360)
|||||+|+++.+ |..||++|+.+.||+||||..+++.+.+++ +++||++|||+||||.||.|++. +|++.+.+
T Consensus 81 lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~~~~~~~~ 156 (437)
T 2yhb_A 81 FVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IPLLAKGK 156 (437)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----CHHHHTTC
T ss_pred EEEEEECCCChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceecccc----ccccCCCC
Confidence 589999998877 999999999999999999999999887778 99999999999999999999763 45555679
Q ss_pred eEEEEEeecCCC---CC--CCCCCcEEEEEEeeCCCCcccceeEEEEcc-CchhhhhhhhhccCCCCCccchhHHHHHHH
Q 018166 78 TIIFGADVTHPQ---PG--EDSSPSIAAVVASMDWPEVTKYRGLVSAQA-HHEEIIQDLYKSTQDPQRGLVHGGMIRELL 151 (360)
Q Consensus 78 tmiiGidvsh~~---~~--~~~~~si~avvaS~d~~~~~~y~~~~~~q~-~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L 151 (360)
|||||+||+|++ ++ ....||++|+|||+| +++++|.+.++.|. .++|++++| ++|++++|
T Consensus 157 tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~~~~~~L 222 (437)
T 2yhb_A 157 TMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TDKFKTRL 222 (437)
T ss_dssp EEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HHHHHHHH
T ss_pred EEEEEEEEeccccccCCCcCCCCCEEEEEEEecC-CCcCeeeeEEEEcCCcchhHHHHH-------------HHHHHHHH
Confidence 999999999998 66 346799999999999 99999999999999 999999998 99999999
Q ss_pred HHHHH---hcCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCC-CCCEEEEEEeecccccccccCCCCCCCC
Q 018166 152 IAFRR---STNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGY-APPVTFVVVQKRHHTRLFPADHNRRDLT 227 (360)
Q Consensus 152 ~~f~~---~~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~-~p~it~Ivv~K~~~~Rff~~~~~~~~~~ 227 (360)
+.|++ .++.+|++|||||||||||||.+|+++|+++|++||.++..++ +|+||||+|+||||+|||+.+.++. .
T Consensus 223 ~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~~--~ 300 (437)
T 2yhb_A 223 ELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHI--H 300 (437)
T ss_dssp HHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC------------------
T ss_pred HHHHhhhhhcCCCCceEEEEeCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEecccceeccCCcccc--c
Confidence 99998 7899999999999999999999999999999999999998777 8999999999999999999765421 1
Q ss_pred CCCCCCCCeeeeccccccCCcccEEEeecCCccccccceeEEEEecCC------CCCHHHHHHHHHHhHhhcCcCCCCcc
Q 018166 228 DRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDEN------RFSADDFQVLTNNLCYTYARCTRSVS 301 (360)
Q Consensus 228 ~~~~N~~~GtvVd~~i~~~~~~dF~L~s~~~~~GTarP~~Y~vl~d~~------~~~~d~lq~lt~~Lc~~~~~~~~~i~ 301 (360)
.+.+||+||||||++||+|..+||||+||.++|||+||+||+||+||+ ++++|+||+|||+|||+|++|+++||
T Consensus 301 ~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r~t~sVs 380 (437)
T 2yhb_A 301 FKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVS 380 (437)
T ss_dssp ---------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC---------
T ss_pred cccCCCCCceEecccccCCCCceEEEEecccccccCCceEEEEEeCCccccccCCCCHHHHHHHHHHHHHhhccccCCCC
Confidence 257899999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhhhhccccCCCCCCCCCCCCccccccCCCCccccccCCCCceeC
Q 018166 302 IVPPAYYAHLAAFRARYYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC 360 (360)
Q Consensus 302 lPaP~~yA~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 360 (360)
+|+|+||||++|+|||+|+....++++++++.++ +. ......++.+|.+|+++||||
T Consensus 381 ipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~mfyl 437 (437)
T 2yhb_A 381 ICPPAYYADLVCDRARIHQKELFDALDENDSVKT-DD-FARWGNSGAVHPNLRNSMYYI 437 (437)
T ss_dssp -CHHHHHHHHHHHHHHHHCHHHHHHHHHTSCCCH-HH-HHHHHHHTSCCGGGTTSCTTC
T ss_pred cCCHHHHHHHHHHHHHHHhhhhccCCCCCCccCC-CC-ccccccccccCHhhcCCceeC
Confidence 9999999999999999999864322111111111 10 111123578999999999997
No 2
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=1.6e-90 Score=738.20 Aligned_cols=340 Identities=55% Similarity=0.903 Sum_probs=295.2
Q ss_pred CEEEEEcCCCCchHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhhcCCceeeecccccccCCccCCCCeEE
Q 018166 1 MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTII 80 (360)
Q Consensus 1 lvl~ilp~~~~~Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~~~~tmi 80 (360)
|||||+|++++.|+.||++||.+.||+||||..+++.+.+++++.||++|||+||||.||.+.+. ..|.+...+|||
T Consensus 519 lvl~Ilp~~~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmi 595 (861)
T 4f3t_A 519 LVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIF 595 (861)
T ss_dssp EEEEEESSSCTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEE
T ss_pred EEEEEeCCCccHHHHHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceecccc---ccccccCCceEE
Confidence 68999997644499999999999999999999999988889999999999999999999988653 235445579999
Q ss_pred EEEeecCCCCCCCCCCcEEEEEEeeCCCCcccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHHhcCC
Q 018166 81 FGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNF 160 (360)
Q Consensus 81 iGidvsh~~~~~~~~~si~avvaS~d~~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~ 160 (360)
||+||+|++++....||++|||||+| .+.++|.+.++.|..++|+|++| ++|++++|+.|++.++.
T Consensus 596 iG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E~i~~l-------------~~~~~~~L~~~~~~~~~ 661 (861)
T 4f3t_A 596 LGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKSTRF 661 (861)
T ss_dssp EEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTTCCSCTTH-------------HHHHHHHHHHHHHHHSC
T ss_pred EEEEecccCCCCCCCceEEEEEEEcC-CCcceEEEEEEEcCCCccHHHHH-------------HHHHHHHHHHHHHHhCC
Confidence 99999999987667899999999999 78999999999999999999988 99999999999999999
Q ss_pred CCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCeeeec
Q 018166 161 KPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFD 240 (360)
Q Consensus 161 ~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~~~~N~~~GtvVd 240 (360)
+|++|||||||||||||++|+++|+++|++||.++..+|+|+||||+|+||||+|||+.+.++ ..++.+||+||||||
T Consensus 662 ~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~--~~~~~~N~~pGTvVD 739 (861)
T 4f3t_A 662 KPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNE--RVGKSGNIPAGTTVD 739 (861)
T ss_dssp CCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGGG--CBTTTTBCCTTEEEC
T ss_pred CCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEccccceeeecCCcc--cccccCCCCCceecc
Confidence 999999999999999999999999999999999998899999999999999999999976421 234689999999999
Q ss_pred cccccCCcccEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHHhhhhh
Q 018166 241 THICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYI 320 (360)
Q Consensus 241 ~~i~~~~~~dF~L~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r~~~~~ 320 (360)
++||+|..+||||+||.++|||+|||||+||+||+++++|+||+|||+|||+|+||+++||+|+|+||||++|+|||+|+
T Consensus 740 ~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~lty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l 819 (861)
T 4f3t_A 740 TKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHL 819 (861)
T ss_dssp SSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHHHHHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCHHHHHHHHHHHhhhhhccCCCCCCchHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC--CCCCCCCCC-CccccccCCCCccccccCCCCceeC
Q 018166 321 EDETSA--GGSTGGSRS-TADRNLAIRPLPVIKDNVKDVMFYC 360 (360)
Q Consensus 321 ~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~m~~~ 360 (360)
.+..++ .+|+.|+.+ ..+.+ .......+|++++++|||+
T Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vh~~~~~~M~y~ 861 (861)
T 4f3t_A 820 VDKEHDSAEGSHTSGQSNGRDHQ-ALAKAVQVHQDTLRTMYFA 861 (861)
T ss_dssp CCC----------------CCST-THHHHTCCCHHHHTTTTTC
T ss_pred ccccccCCccccccCCCcccchh-hhhhhhhhhhhhccCceeC
Confidence 864322 223222222 11111 1122357999999999997
No 3
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=3e-88 Score=723.05 Aligned_cols=341 Identities=33% Similarity=0.575 Sum_probs=295.0
Q ss_pred CEEEEEcCC-CCc-hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhhcCCceeeecccccccCCccC----
Q 018166 1 MLIIILPDV-SGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVT---- 74 (360)
Q Consensus 1 lvl~ilp~~-~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~---- 74 (360)
|||||+|++ +.+ |..||++||.++||+||||..+++.+.+.++++||++|||+||||+||.|++. .+|++.
T Consensus 683 lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~---~~~~l~~~~~ 759 (1046)
T 4f1n_A 683 YILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIE---NNKLLIDKES 759 (1046)
T ss_dssp EEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEEHHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTT---GGGGGEETTT
T ss_pred EEEEEecCCCCchHHHHHHHHhhccCCcccEEEehhhhccccHHHHHHHHHHHHHhcCCeeeecccc---cccccccccc
Confidence 589999998 455 99999999999999999999999988889999999999999999999999764 233332
Q ss_pred CCCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCcccceeEEEEccC-chhhhhhhhhccCCCCCccchhHHHHHHHHH
Q 018166 75 DRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAH-HEEIIQDLYKSTQDPQRGLVHGGMIRELLIA 153 (360)
Q Consensus 75 ~~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~y~~~~~~q~~-~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~ 153 (360)
..+|||||+||+|++++ ..+|++|||||+| .++++|.+.+++|.. ++|+|++| ++|+.++|+.
T Consensus 760 ~~ptMiiG~DVtH~p~~--~~~SiaavVaS~d-~~~t~y~s~~~~Q~~~~~Eii~~L-------------~~~~~~~L~~ 823 (1046)
T 4f1n_A 760 NLPILVLGSDVTHYPEK--DQNSIASLVGSYD-DKFTQFPGDYMLQDGPGEEIITNV-------------GSLMLNRLKI 823 (1046)
T ss_dssp TEECEEEEEEEECCSST--TCEEEEEEEECCS-SSCCCCCEEEEEEEEETCCSCTTG-------------GGGHHHHHHH
T ss_pred CCceEEEeeeeecCCCC--CCCeeeEEEEEEC-CCcCeEeeEEEEecCCCccHHHHH-------------HHHHHHHHHH
Confidence 24699999999995433 2469999999999 789999999999997 89999988 9999999999
Q ss_pred HHHh-cCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhc------CCCCCCEEEEEEeecccccccccCCCCCCC
Q 018166 154 FRRS-TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLE------EGYAPPVTFVVVQKRHHTRLFPADHNRRDL 226 (360)
Q Consensus 154 f~~~-~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~------~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~ 226 (360)
|++. ++.+|++|||||||||||||.+|+++|+++|++||.++. .+|+|+||||+|+||||+|||+.+.+..+.
T Consensus 824 y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~Ik~a~~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~ 903 (1046)
T 4f1n_A 824 YQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNE 903 (1046)
T ss_dssp HHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHHHHHHHHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECT
T ss_pred HHHhcCCCCCcEEEEEecCCchHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCEEEEEEecCccceeeecccccccc
Confidence 9998 789999999999999999999999999999999999985 578999999999999999999975321111
Q ss_pred C------CCCCCCCCeeeeccccccCCcccEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCc
Q 018166 227 T------DRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSV 300 (360)
Q Consensus 227 ~------~~~~N~~~GtvVd~~i~~~~~~dF~L~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i 300 (360)
. +..+||+||||||++||+|..+||||+||.++|||+|||||+||+||+++++|+||+|||+|||+|+||+++|
T Consensus 904 ~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sV 983 (1046)
T 4f1n_A 904 KGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSV 983 (1046)
T ss_dssp TSCEEECEETTEECTTEEECSSSSCSSBEEEEEECSCCCSSSCCCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCC
T ss_pred ccccccccccCCCCCCcEeeccccccCcceEEEEccccCCCcccCcEEEEEeCCCCCCHHHHHHHHHHHhhhhcccCCCc
Confidence 1 1368999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhhhhhccccCC---CCCCCCCCCCccccccCCCCccccccCCCCceeC
Q 018166 301 SIVPPAYYAHLAAFRARYYIEDETSA---GGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC 360 (360)
Q Consensus 301 ~lPaP~~yA~~~a~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 360 (360)
|+|+|+||||++|+|||+|+....++ .++.++++..+......++||.||++++++||||
T Consensus 984 svPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 984 KVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEKGSKDQPTVSKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC----------CCCHHHHSCCCCGGGTTSCTTC
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhccccccccccCCccccccCcccccchhhhhhccceeeC
Confidence 99999999999999999999864321 1221222211123445577999999999999997
No 4
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=4.6e-77 Score=584.60 Aligned_cols=289 Identities=33% Similarity=0.582 Sum_probs=241.2
Q ss_pred CEEEEEcCCCCc-hHHHHHHhhhhcCceeeeeeccccccchhh--HHHHHHHHHHhhcCCceeeecccccccCCccCCCC
Q 018166 1 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQ--YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRP 77 (360)
Q Consensus 1 lvl~ilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~--~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~~~~ 77 (360)
|||||+|+++.+ |..||++|+.+.||+||||..+++.+.+++ +++||++|||+||||+||.|++. +|++.+.+
T Consensus 81 lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~----~~~~~~~~ 156 (388)
T 2yha_A 81 FVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IPLLAKGK 156 (388)
T ss_dssp EEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSC----CHHHHTSC
T ss_pred EEEEEECCCChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceecccc----ccccCCCC
Confidence 589999998877 999999999999999999999999887788 99999999999999999999763 45555679
Q ss_pred eEEEEEeecCCC---CC--CCCCCcEEEEEEeeCCCCcccceeEEEEcc-CchhhhhhhhhccCCCCCccchhHHHHHHH
Q 018166 78 TIIFGADVTHPQ---PG--EDSSPSIAAVVASMDWPEVTKYRGLVSAQA-HHEEIIQDLYKSTQDPQRGLVHGGMIRELL 151 (360)
Q Consensus 78 tmiiGidvsh~~---~~--~~~~~si~avvaS~d~~~~~~y~~~~~~q~-~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L 151 (360)
|||||+||+|++ ++ ....||++|+|||+| +++++|.+.++.|. .++|++++| ++|++++|
T Consensus 157 tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~~~~~~L 222 (388)
T 2yha_A 157 TMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TDKFKTRL 222 (388)
T ss_dssp EEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HHHHHHHH
T ss_pred EEEEEEEEecccccCCCCcCCCCCEEEEEEEEcC-CCCCEEEEEEEEcCCCcccHHHHH-------------HHHHHHHH
Confidence 999999999998 66 446799999999999 99999999999999 899999998 99999999
Q ss_pred HHHHH---hcCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCC-CCCEEEEEEeecccccccccCCCCCCCC
Q 018166 152 IAFRR---STNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGY-APPVTFVVVQKRHHTRLFPADHNRRDLT 227 (360)
Q Consensus 152 ~~f~~---~~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~-~p~it~Ivv~K~~~~Rff~~~~~~~~~~ 227 (360)
+.|++ .++.+|++|||||||||||||.+|+++|+++|++||.++..++ +|+||||+|+||
T Consensus 223 ~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr---------------- 286 (388)
T 2yha_A 223 ELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG---------------- 286 (388)
T ss_dssp HHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC------------------
T ss_pred HHHHHhhhhcCCCCceEEEEecCcChhHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEeccc----------------
Confidence 99999 7899999999999999999999999999999999999998777 899999999997
Q ss_pred CCCCCCCCeeeeccccccCCcccEEEeecCCccccccceeEEEEecCC------CCCHHHHHHHHHHhHhhcCcCCCCcc
Q 018166 228 DRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDEN------RFSADDFQVLTNNLCYTYARCTRSVS 301 (360)
Q Consensus 228 ~~~~N~~~GtvVd~~i~~~~~~dF~L~s~~~~~GTarP~~Y~vl~d~~------~~~~d~lq~lt~~Lc~~~~~~~~~i~ 301 (360)
+||+||+||+||+ ++++|+||+|||+|||+|+||+++||
T Consensus 287 -----------------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r~t~sVs 331 (388)
T 2yha_A 287 -----------------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVS 331 (388)
T ss_dssp ---------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC---------
T ss_pred -----------------------------------cCCceEEEEeCCccccccCCCCHHHHHHHHHHHHHHhhcccCCCC
Confidence 8999999999998 89999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhhhhccccCCCCCCCCCCCCccccccCCCCccccccCCCCceeC
Q 018166 302 IVPPAYYAHLAAFRARYYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC 360 (360)
Q Consensus 302 lPaP~~yA~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 360 (360)
+|+|+||||++|+|||+|+.+..+++++++++++ +. ......++.+|.+|+++||||
T Consensus 332 ipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~mfyl 388 (388)
T 2yha_A 332 ICPPAYYADLVCDRARIHQKELFDALDENDSVKT-DD-FARWGNSGAVHPNLRNSMYYI 388 (388)
T ss_dssp -CHHHHHHHHHHHHHHHHCHHHHHHHTTCSCCCH-HH-HHHHHHHTCCCGGGTTSCTTC
T ss_pred cCcHHHHHHHHHHHHHHHhhhhccCCCcccccCC-Cc-ccccccccccCHHhcCCceeC
Confidence 9999999999999999999864332222211111 11 111123578999999999997
No 5
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=8.7e-62 Score=505.54 Aligned_cols=265 Identities=17% Similarity=0.191 Sum_probs=225.0
Q ss_pred CEEEEEcCC-------CCc-hHHHHHHhhhhcCceeeeeeccccccc-hhhHHHHHHHHHHhhcCCceeeecccccccCC
Q 018166 1 MLIIILPDV-------SGS-YGRIKRVCETELGIVSQCCQPRQASRL-NMQYFENVALKINVKVGGRNTVLVDAVQKRIP 71 (360)
Q Consensus 1 lvl~ilp~~-------~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~-~~~~~~ni~lkinaKlGG~n~~l~~~~~~~~p 71 (360)
|+|||+|++ +.+ |+.||++| .+.||+||||..+++.+. +.+++.||++|||+||||+||.|+..
T Consensus 419 lvlvIlp~~~~~~~~~~~~~Y~~IK~~~-~~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~~------ 491 (706)
T 1yvu_A 419 LVIVFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI------ 491 (706)
T ss_dssp EEEEEEC----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC------
T ss_pred EEEEEECCccccccccCccHHHHHHHHH-hcCCCceEEEehhhccccchHHHHHHHHHHHHHHhCCeeeeeccC------
Confidence 589999997 666 99999985 599999999999998764 57999999999999999999999752
Q ss_pred ccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCC--cccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHH
Q 018166 72 LVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPE--VTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRE 149 (360)
Q Consensus 72 ~~~~~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~--~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~ 149 (360)
...+|||||+||+|++.+. ..+|++|+|+|+| .+ +.+|.+....| .++|++++ ++..
T Consensus 492 --~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~d-~~g~~~~~~~~~~~q-~~~ei~~~----------------l~~~ 550 (706)
T 1yvu_A 492 --EGKVDAFVGIDISRITRDG-KTVNAVAFTKIFN-SKGELVRYYLTSYPA-FGEKLTEK----------------AIGD 550 (706)
T ss_dssp --TTCCSEEEEECEEECCCSS-SCCCEEEEEEEEC-TTSCEEEEEEEEECS-CTTHHHHH----------------HHHH
T ss_pred --CCCceEEEEEEEeccCCCC-CCceEEEEEEEEc-CCCCEEEEEEEeccc-ccchHHHH----------------HHHH
Confidence 1367999999999997433 3589999999999 54 56666655444 36777754 4567
Q ss_pred HHHHHHHhcCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCCC
Q 018166 150 LLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDR 229 (360)
Q Consensus 150 ~L~~f~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~~ 229 (360)
+|+.|++.++.+|++|||||||+|| ++|+++|++||.++ .|++++|+|+||||+|||+.+
T Consensus 551 ~l~~~~~~~~~~P~rIIiyRDGVse-------~~El~~Ik~A~~~~----~pkit~IvV~Krh~tRfF~~~--------- 610 (706)
T 1yvu_A 551 VFSLLEKLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGELY----GYSLELLEIIKRNNPRFFSNE--------- 610 (706)
T ss_dssp HHHHHHHTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHHH----TCEEEEEEEECSSCCCEECSC---------
T ss_pred HHHHHHHhcCCCCcEEEEEeCCCCc-------HHHHHHHHHHHHHc----CCcEEEEEEEeccCeeEECCC---------
Confidence 7788888888999999999999999 68999999999874 699999999999999999842
Q ss_pred CCCCCCeeeeccccccCCcccEEEeecCC-ccccccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHH
Q 018166 230 SGNILPGTVFDTHICHPTEFDFYLNSHAG-IQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYY 308 (360)
Q Consensus 230 ~~N~~~GtvVd~~i~~~~~~dF~L~s~~~-~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~y 308 (360)
||+||||||. ..++|||++|.+ .|||+||+||+++.+|. +.|+||++||+|||+|++|++++|+|+|+||
T Consensus 611 --np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY~vv~~D~--~~d~Lq~lty~Lc~ly~r~t~svslPaPiyY 681 (706)
T 1yvu_A 611 --KFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHY 681 (706)
T ss_dssp --SCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTT
T ss_pred --CCCCeEEEEc-----CCCeEEEEecCCccCCCCCCEEEEEEeCCC--CHHHHHHHHHHHHHhccccCCCcccChHHHH
Confidence 5999999994 457888877655 99999999999555554 8999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcc
Q 018166 309 AHLAAFRARYYIED 322 (360)
Q Consensus 309 A~~~a~r~~~~~~~ 322 (360)
||++|+|++.++.+
T Consensus 682 AhllA~r~~~~~~p 695 (706)
T 1yvu_A 682 SDKITKLMLRGIEP 695 (706)
T ss_dssp HHHHHHHHHTCSSC
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999998874
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=6.7e-56 Score=455.05 Aligned_cols=259 Identities=19% Similarity=0.227 Sum_probs=209.4
Q ss_pred CEEEEEcCCCCc-hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhhcCCceeeecccccccCCccCCCCeE
Q 018166 1 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTI 79 (360)
Q Consensus 1 lvl~ilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaKlGG~n~~l~~~~~~~~p~~~~~~tm 79 (360)
|||||+|+++.+ |+.||+.| .+.||+||||. +++.+...++++||++|||+||||.||.|+. |. .++|
T Consensus 405 lvvvIlp~~~~~~y~~IKk~~-~~~GIpTQcV~-~tl~k~~~~ia~NIaLkINaKLGG~pW~L~~------P~---~~tm 473 (685)
T 3ho1_A 405 AVLVLTPPMAWEDRNRLKALL-LREGLPSQILN-VPLREEERHRWENALLGLLAKAGLQVVALSG------AY---PAEL 473 (685)
T ss_dssp EEEEEESCCCHHHHHHHHHHH-HHTTCCEEEEE-SSCCTTCHHHHHHHHHHHHHHHTCCCCEECS------CC---SCSE
T ss_pred EEEEEECCCCccHHHHHHHHH-hcCCCccEEEe-cccccccHhHHHHHHHHHHHHhCCeeEEecC------CC---CCeE
Confidence 589999999888 99999875 79999999999 7777667788999999999999999999975 32 6899
Q ss_pred EEEEeecCCCCCCCCCCcEEEEEEeeCC-CCcccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHHhc
Q 018166 80 IFGADVTHPQPGEDSSPSIAAVVASMDW-PEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRST 158 (360)
Q Consensus 80 iiGidvsh~~~~~~~~~si~avvaS~d~-~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~~ 158 (360)
|||+||+|++. .++++++++++- ....+| +....|...++.++++ .+++.++|..|++.+
T Consensus 474 iIGiDVsH~~~-----~~~~~~aav~~~dg~~~~~-~~~~~Q~~e~l~~~~L-------------~~~l~eaL~~Y~k~n 534 (685)
T 3ho1_A 474 AVGFDAGGRES-----FRFGGAACAVGGDGGHLLW-TLPEAQAGERIPQEVV-------------WDLLEETLWAFRRKA 534 (685)
T ss_dssp EEEEEEEETTE-----EEEEEEEEEECC--CCCEE-ECCCCCCSCCCHHHHH-------------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCC-----CccceEEEEEECCCCEEEe-EEEEccCCcEecHHHH-------------HHHHHHHHHHHHHHh
Confidence 99999999862 355555555550 333443 2234444333334566 899999999999999
Q ss_pred CCCCceEEEeecCC-CchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCee
Q 018166 159 NFKPHRIIFYRDGV-SEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGT 237 (360)
Q Consensus 159 ~~~P~~IIiyRdGv-segq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~~~~N~~~Gt 237 (360)
+.+|+||||||||| +|+|+ ++|++||+++ .++++||+|+||||+|||+.+ .+|.+||
T Consensus 535 g~lP~RIIIyRDGV~se~E~--------~~I~eAl~~~----~~~~t~IvVqKRh~tRfF~~n----------~pp~~Gt 592 (685)
T 3ho1_A 535 GRLPSRVLLLRNGRVPQDEF--------ALALEALARE----GIAYDLVSVRKSGGGRVYPVQ----------GRLADGL 592 (685)
T ss_dssp SSCCSEEEEEECSSSCSGGG--------HHHHHHHHHT----TCEEEEEEEESSCCCCEEESS----------SCCCSSE
T ss_pred CCCCcEEEEEeCCCCCHHHH--------HHHHHHHHhc----CCCEEEEEEEecCCceEecCC----------CCCCCeE
Confidence 99999999999999 77755 5667888876 378999999999999999963 2467788
Q ss_pred eeccccccCCcccEEEeec-CCccccccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCC-CCcccccchHHHHHHH-H
Q 018166 238 VFDTHICHPTEFDFYLNSH-AGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCT-RSVSIVPPAYYAHLAA-F 314 (360)
Q Consensus 238 vVd~~i~~~~~~dF~L~s~-~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~-~~i~lPaP~~yA~~~a-~ 314 (360)
+++. +.++|||.++ .+.+||++|+||+ +|+++++.|+||++||+|||+|+||+ +++|+|+|+||||++| .
T Consensus 593 ~v~~-----e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~LQ~ltY~Lchmy~nst~~svsvPAP~~YAhklAk~ 665 (685)
T 3ho1_A 593 YVPL-----EDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKE 665 (685)
T ss_dssp EEEC-----STTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHHHHHHHHGGGCCSSCSSSCCSSCHHHHHHHHHHHH
T ss_pred EEeC-----CCCEEEEEecCCCCccCCceEEEE--ECCCCCCHHHHHHHHHHHHHhhccCCCCCCCcChHHHHHHHHHHH
Confidence 7743 4445555544 4689999999998 88889999999999999999999997 9999999999999999 5
Q ss_pred Hhhh
Q 018166 315 RARY 318 (360)
Q Consensus 315 r~~~ 318 (360)
|||.
T Consensus 666 ~~r~ 669 (685)
T 3ho1_A 666 VGRL 669 (685)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5553
No 7
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=5.2e-56 Score=462.72 Aligned_cols=263 Identities=18% Similarity=0.211 Sum_probs=220.3
Q ss_pred CEEEEE-cCCCCc-hHHHHHHhhhhcCceeeeeeccccccc----h-----hhHHHHHHHHHHhhcCCceeeeccccccc
Q 018166 1 MLIIIL-PDVSGS-YGRIKRVCETELGIVSQCCQPRQASRL----N-----MQYFENVALKINVKVGGRNTVLVDAVQKR 69 (360)
Q Consensus 1 lvl~il-p~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~----~-----~~~~~ni~lkinaKlGG~n~~l~~~~~~~ 69 (360)
|+||++ |.++.+ |+.||+.| .+.|||||||..+|+.+. + .+++.||++|||+||||.||.|+.
T Consensus 475 lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~~----- 548 (771)
T 1u04_A 475 LAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDY----- 548 (771)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEESC-----
T ss_pred EEEEEEcCCCCcchHHHHHHHH-hcCCcccEEEecccccCccccccccchhHHHHHHHHHHHHHHhCCcceeecC-----
Confidence 355666 444555 99999987 799999999999998643 1 678999999999999999999864
Q ss_pred CCccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCcccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHH
Q 018166 70 IPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRE 149 (360)
Q Consensus 70 ~p~~~~~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~ 149 (360)
|. .++||||+||+|+.++ ...++++|+|+|.| ..+.+|.+....+..++++ . + +.++++
T Consensus 549 -p~---~~tmiIGiDV~H~~~~-~~svs~~A~V~s~d-g~~~~~~s~~~~~~~~E~i-~-l-------------~~~l~~ 607 (771)
T 1u04_A 549 -RF---NYDYIIGIDVAPMKRS-EGYIGGSAVMFDSQ-GYIRKIVPIKIGEQRGESV-D-M-------------NEFFKE 607 (771)
T ss_dssp -CC---SSSEEEEEEEEEECCT-TTCEEEEEEEEETT-SCEEEEEEEECCCCSSSSC-C-H-------------HHHHHH
T ss_pred -CC---CCEEEEEEEEEcCCCC-CCceEEEEEEECCC-CCEEEEEEEEeecCCccEE-c-H-------------HHHHHH
Confidence 22 5899999999998543 34577788888887 6666776654444444443 2 4 779999
Q ss_pred HHHHHHHh-cCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccccccccCCCCCCCCC
Q 018166 150 LLIAFRRS-TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTD 228 (360)
Q Consensus 150 ~L~~f~~~-~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~~~~Rff~~~~~~~~~~~ 228 (360)
+|..|++. ++.+|+||||||||+ +.++|+++|++||.+. .|+++||+|+|||++|||. +
T Consensus 608 ~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh~tRfF~-~-------- 667 (771)
T 1u04_A 608 MVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNHPVRAFA-N-------- 667 (771)
T ss_dssp HHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCCCCCBSS-C--------
T ss_pred HHHHHHHHhCCCCCCEEEEEcCCC-------CCHHHHHHHHHHHHhc----CCCEEEEEEEecCceeeec-C--------
Confidence 99999998 588999999999996 5578999999999875 4899999999999999992 1
Q ss_pred CCCCCCCeeeeccccccCCcccEEEeecC--CccccccceeE--EEEecCCCCC----HHHHHHHHHHhHhhcCcCCC-C
Q 018166 229 RSGNILPGTVFDTHICHPTEFDFYLNSHA--GIQGTSRPTHY--HVLYDENRFS----ADDFQVLTNNLCYTYARCTR-S 299 (360)
Q Consensus 229 ~~~N~~~GtvVd~~i~~~~~~dF~L~s~~--~~~GTarP~~Y--~vl~d~~~~~----~d~lq~lt~~Lc~~~~~~~~-~ 299 (360)
++|||||+ . ||||+||. +.+||++|+|| +|++|+++++ .|+||++||+|||+|+||++ +
T Consensus 668 ----~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~~~~s 735 (771)
T 1u04_A 668 ----MKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISAD 735 (771)
T ss_dssp ----SCEEEEET-------T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSSCC
T ss_pred ----CCCeeEEe-------C-CEEEEeccccCCCCCCCCEEEEEEEEecCCCCCCCCCHHHHHHHHHHhhhhcccCCCCC
Confidence 25899993 3 99999996 45999999999 9999999999 99999999999999999998 9
Q ss_pred cccccchHHHHHHHHHhhhhhcc
Q 018166 300 VSIVPPAYYAHLAAFRARYYIED 322 (360)
Q Consensus 300 i~lPaP~~yA~~~a~r~~~~~~~ 322 (360)
+|+|||+||||++|++++.++..
T Consensus 736 vrvPAP~~YAhklA~lvgq~~~~ 758 (771)
T 1u04_A 736 MRLPAPVHYAHKFANAIRNEWKI 758 (771)
T ss_dssp CCSCHHHHHHHHHHHHHHTTCCC
T ss_pred ccCCchHHHHHHHHHHHHhhhcc
Confidence 99999999999999999887653
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=100.00 E-value=1.7e-53 Score=422.55 Aligned_cols=274 Identities=15% Similarity=0.116 Sum_probs=212.9
Q ss_pred EEEEE--------cCCCCchHHHHHHhhhhcCceeeeeeccccccchh-hHHHHHHHHHHhhcCCceeeecccccccCCc
Q 018166 2 LIIIL--------PDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNM-QYFENVALKINVKVGGRNTVLVDAVQKRIPL 72 (360)
Q Consensus 2 vl~il--------p~~~~~Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~-~~~~ni~lkinaKlGG~n~~l~~~~~~~~p~ 72 (360)
+|||+ |+++..|..+|+ ++.+.|||||||..+|+.+.+. ++++||++|||+||||+||.|+.. -|.
T Consensus 103 vlvilp~~~~~~~~~~~~~~y~~K~-~~~~~gvptQ~I~~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~ 177 (427)
T 2w42_A 103 AIDTGVDGIMLVLPEYNTPLYYKLK-SYLINSIPSQFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK 177 (427)
T ss_dssp HHHHCCSEEEEEESSCCHHHHHHHH-HHHHTTSCEEEEEGGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS
T ss_pred EEEEEEccccccCCCCCcchHHHHH-HHhCCCcCcEEEEhhhcccccchhHHHHHHHHHHHHhCCcceecccC----CCC
Confidence 45677 555555556886 5689999999999999986553 558999999999999999999752 122
Q ss_pred cCCCCeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCcccceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHH
Q 018166 73 VTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLI 152 (360)
Q Consensus 73 ~~~~~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~ 152 (360)
.++||||+|++|++++ +++|++.+.| .+...+...+..|.+++|+++++ .++++++|+
T Consensus 178 ---~~~miiGidv~h~~~~-----~v~g~a~v~~-~~g~~~~~~~~~~~~~~E~~~~l-------------~~~l~~aL~ 235 (427)
T 2w42_A 178 ---GSDIIIGTGATRIDNV-----NLFCFAMVFK-KDGTMLWNEISPIVTSSEYLTYL-------------KSTIKKVVY 235 (427)
T ss_dssp ---SCSEEEEEEEEESSSS-----EEEEEEEEEC-TTSCEEEEEECCCEEGGGHHHHH-------------HHHHHHHHH
T ss_pred ---CCeEEEEEEEEEcCCC-----cEEEEEEEEc-CCCCEEEEEEEecCChhHHHHHH-------------HHHHHHHHH
Confidence 5699999999998753 5666655445 44443444444555678999988 999999999
Q ss_pred HHHH-hcCCCCc--eEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcC----CCCCCEEEEEEeeccc-ccccccCCCCC
Q 018166 153 AFRR-STNFKPH--RIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEE----GYAPPVTFVVVQKRHH-TRLFPADHNRR 224 (360)
Q Consensus 153 ~f~~-~~~~~P~--~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~----~~~p~it~Ivv~K~~~-~Rff~~~~~~~ 224 (360)
.|++ .|+.+|+ ||||| ||+..+.++|+++|++||.+++. +++|+++||+|+|||+ .|+|..++
T Consensus 236 ~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~a~~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~~--- 306 (427)
T 2w42_A 236 GFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPNN--- 306 (427)
T ss_dssp HHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHHHHHHHHHTTSSCTTCEEEEEEEEECCCEEEEC-------
T ss_pred HHHHHhcCCCCCceEEEEE------eecccccHHHHHHHHHHHHHhccccccCCCCCEEEEEEEccccceeeecCCC---
Confidence 9999 8999888 66887 67778899999999999999865 7899999999999999 88886532
Q ss_pred CCCCCCCCCCCeeeeccccccCCcccEEEeecCCccc------c---ccceeEEEEec----CCCC-CHHHHHHHHHHhH
Q 018166 225 DLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQG------T---SRPTHYHVLYD----ENRF-SADDFQVLTNNLC 290 (360)
Q Consensus 225 ~~~~~~~N~~~GtvVd~~i~~~~~~dF~L~s~~~~~G------T---arP~~Y~vl~d----~~~~-~~d~lq~lt~~Lc 290 (360)
.+||+||||||.+ .+|||.++.+.|+ + ++|+||+|++| ++.+ +.|+||++||+||
T Consensus 307 -----~~nP~~GTvVd~~------~~~~l~~~~g~q~~~~~~~~~~~~~Pt~y~vi~d~~~~~~~~~~~d~lq~lty~L~ 375 (427)
T 2w42_A 307 -----RFHPYEGTKVKLS------SKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLS 375 (427)
T ss_dssp ---------CCSEEEESS------SSEEEEEEEC---------CEEEEEEEEEEEEEECCCTTTHHHHHHHHHHHHHHHH
T ss_pred -----CCCCCCceEEEcC------CCeEEEEEEeeeccccccccccCCCCEEEEEEecCCcCcccCCCHHHHHHHHHHhh
Confidence 3599999999973 3445555554444 3 34999999995 3444 5899999999999
Q ss_pred hhcCcCCCCcccccchHHHHHHHHHhhhhhcc
Q 018166 291 YTYARCTRSVSIVPPAYYAHLAAFRARYYIED 322 (360)
Q Consensus 291 ~~~~~~~~~i~lPaP~~yA~~~a~r~~~~~~~ 322 (360)
|+||+++.++|+|+|+||||++|+++.....-
T Consensus 376 ~~nw~~t~~v~vPap~~YAhklA~l~~~~~~~ 407 (427)
T 2w42_A 376 KMNWRGFRSRNLPVTVNYPKLVAGIIANVNRY 407 (427)
T ss_dssp TCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred CcccCCCCCCCcCcchHhHHHHHHHHhhhhhc
Confidence 99999999999999999999999999886553
No 9
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.62 E-value=1.6e-16 Score=135.20 Aligned_cols=62 Identities=69% Similarity=1.180 Sum_probs=58.2
Q ss_pred CEEEEEcCCCCc-hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhhcCCceeee
Q 018166 1 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL 62 (360)
Q Consensus 1 lvl~ilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaKlGG~n~~l 62 (360)
|||||+|+++.+ |+.||+++|.+.||+|||+..+++.+.++++++||++|||+||||+|+.|
T Consensus 85 lv~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 85 LLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp EEEEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred EEEEEeCCCCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 589999999877 99999999999999999999999988889999999999999999999864
No 10
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.62 E-value=1.1e-16 Score=134.96 Aligned_cols=62 Identities=82% Similarity=1.360 Sum_probs=58.0
Q ss_pred CEEEEEcCCCCchHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhhcCCceeee
Q 018166 1 MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL 62 (360)
Q Consensus 1 lvl~ilp~~~~~Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaKlGG~n~~l 62 (360)
|||||+|+++.+|+.||+++|.+.||+|||+..+++.+.++++++||++|||+||||+|+.|
T Consensus 78 lv~~ilp~~~~~Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 78 LLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp EEEEECCSSSSCHHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 68999999876699999999999999999999999988889999999999999999999864
No 11
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.61 E-value=2.2e-16 Score=134.71 Aligned_cols=62 Identities=37% Similarity=0.605 Sum_probs=52.1
Q ss_pred CEEEEEcCCCCchHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhhcCCceeee
Q 018166 1 MLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL 62 (360)
Q Consensus 1 lvl~ilp~~~~~Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaKlGG~n~~l 62 (360)
|||||+|+++..|+.||++||.+.||+|||+..+++.+.++++++||++|||+||||.|+.|
T Consensus 89 lv~~ilp~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 89 LVLCAMSRKDDGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp EEEEEESSCCTHHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred EEEEEECCCCccHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 58999999875599999999999999999999999988889999999999999999999864
No 12
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.56 E-value=1.4e-15 Score=127.88 Aligned_cols=58 Identities=43% Similarity=0.749 Sum_probs=53.2
Q ss_pred CEEEEEcCCCCc-hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhhcCCce
Q 018166 1 MLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRN 59 (360)
Q Consensus 1 lvl~ilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaKlGG~n 59 (360)
|||||+|++ .+ |+.||++||.+.||+|||+..+++.+.++++++||++|||+||||+|
T Consensus 80 lv~~ilp~~-~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 80 LVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp EEEEEECSS-CHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred EEEEEECCC-ChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 689999974 45 99999999999999999999999988889999999999999999986
No 13
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=90.54 E-value=2 Score=38.42 Aligned_cols=44 Identities=23% Similarity=0.136 Sum_probs=34.2
Q ss_pred ccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHHh
Q 018166 263 SRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 316 (360)
Q Consensus 263 arP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r~ 316 (360)
.+|+...+ -..++.|+--.++-.+| +.-|+|.|+..||++|+++
T Consensus 180 ~kPlyVS~---Ghrisl~~A~~~v~~~~-------~~yRlPEP~R~AD~lsr~~ 223 (237)
T 3goc_A 180 VKPVFVSV---GHRVDLDHACAHTLALT-------PKYRIPETTRRADSLCRRA 223 (237)
T ss_dssp SCCEEEEE---EESCCHHHHHHHHHHTC-------SSCSSCHHHHHHHHHHHHH
T ss_pred ccCEEEec---CCCcCHHHHHHHHHHHc-------cCCCCCHHHHHHHHHHHHH
Confidence 57876554 23588999999998876 4468999999999999554
No 14
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=88.35 E-value=5.4 Score=35.31 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=34.9
Q ss_pred ccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHHhhh
Q 018166 263 SRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARY 318 (360)
Q Consensus 263 arP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r~~~ 318 (360)
.+|+...+ -..++.|+--+++-.+|- +--|+|.|+..||++|++.+.
T Consensus 176 ~kPlyVS~---Gh~i~l~~A~~~v~~~~~------~~yRlPEP~R~Ad~~s~~~~~ 222 (225)
T 2w36_A 176 SAPIFVSP---GHLMDVESSKRLIKAFTL------PGRRIPEPTRLAHIYTQRLKK 222 (225)
T ss_dssp SCCEEEEE---CSSCCHHHHHHHHHHHCC------TTCSSCHHHHHHHHHHHHHTT
T ss_pred ccCEEEeC---CCCcCHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHhhh
Confidence 36764333 346899999999888762 225899999999999987655
No 15
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=74.00 E-value=29 Score=28.85 Aligned_cols=96 Identities=24% Similarity=0.273 Sum_probs=50.3
Q ss_pred CeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCcc--cceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 018166 77 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVT--KYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 154 (360)
Q Consensus 77 ~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~--~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f 154 (360)
+.-|-++|+||-.. .-.++++|.-.| .... .|- .+.... +-.+|+ .+|.+.|..-
T Consensus 17 P~RIE~fDiSh~~G----~~~VasmVVf~~-g~p~K~~YR-rf~I~~---~g~DDy--------------a~M~Evl~RR 73 (159)
T 2nrr_A 17 PYRIEGIDISHLQG----KYTVASLVVFED-GFPKKGDYR-RYKIEQ---DHPDDY--------------ESIRTVVKRR 73 (159)
T ss_dssp CCEEEEEEEECC-------CCEEEEEEEET-TEECGGGCE-EEEC--------CHH--------------HHHHHHHHHH
T ss_pred CCEEEEEECCccCC----ccceEEEEEEeC-CccChhhCc-eeecCC---CCCCHH--------------HHHHHHHHHH
Confidence 56899999999753 346777776555 3221 121 112211 112343 3455655443
Q ss_pred HHhcCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeec
Q 018166 155 RRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 211 (360)
Q Consensus 155 ~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~ 211 (360)
...- .+|+-|+| || +.||+. +.++++.+++. .+.+|-+.|+
T Consensus 74 ~~r~-~~PDLilI--DG-GkgQl~--------aA~~vl~elg~----~i~v~glAK~ 114 (159)
T 2nrr_A 74 YSKH-PLPNLLFV--DG-GIGQVN--------AAIEALKEIGK----DCPVVGLAKK 114 (159)
T ss_dssp HTTS-CCCSEEEE--SS-CHHHHH--------HHHHHHHHTTC----CCCEEEEC--
T ss_pred hccC-CCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CccEEEEEcC
Confidence 2222 68988877 66 356654 56777877753 2446777775
No 16
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=61.41 E-value=13 Score=33.17 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=40.5
Q ss_pred cccceeEEEEecCCCCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHHhhhhhcc
Q 018166 262 TSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIED 322 (360)
Q Consensus 262 TarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r~~~~~~~ 322 (360)
..+|+...+=+ .++.|+--.++-.+| .+.-++|.|+..||++|++.|..+..
T Consensus 184 ~~kPlyVS~Gh---~i~l~~A~~~v~~~~------~~~yRlPEP~R~AD~~a~~~r~~l~~ 235 (246)
T 3ga2_A 184 DVKPIFLSCGN---YIDLDSSYQITMSLI------NQESRLPIPVRLADLETHVLRTFYQK 235 (246)
T ss_dssp TSCCEEEEEEE---SSCHHHHHHHHHHTC------CTTCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeccC---CCCHHHHHHHHHHHc------cCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 35788666533 588999999988876 12468999999999999999886653
No 17
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=58.95 E-value=3.8 Score=34.15 Aligned_cols=62 Identities=13% Similarity=0.245 Sum_probs=40.3
Q ss_pred HHHHHHHHhc-CCCCceEEEeecCCCchhHHHHHHHHHH----HHHHHHHhhcCC----CCCCEEEEEEee
Q 018166 149 ELLIAFRRST-NFKPHRIIFYRDGVSEGQFSQVLLHEMN----AIRQACASLEEG----YAPPVTFVVVQK 210 (360)
Q Consensus 149 ~~L~~f~~~~-~~~P~~IIiyRdGvsegq~~~v~~~Ei~----~i~~a~~~~~~~----~~p~it~Ivv~K 210 (360)
+.|..|+++- +.+|...+||-|++++.+.......|++ .+++++..++.. +.-.+|+|+-++
T Consensus 46 ~eL~~WQ~~WRkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R 116 (160)
T 3qbz_A 46 KELLEWQTNWKKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRR 116 (160)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESS
T ss_pred HHHHHHHHHHHHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecC
Confidence 5556676653 4677788999999998754444444444 455777777642 556777776544
No 18
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=58.95 E-value=55 Score=28.66 Aligned_cols=95 Identities=24% Similarity=0.320 Sum_probs=53.4
Q ss_pred CeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCcc--cceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHH-
Q 018166 77 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVT--KYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIA- 153 (360)
Q Consensus 77 ~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~--~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~- 153 (360)
|.-|-++|+||-.. .-.++++|.-.| .... .|- .+.... +-.+|+ .+|.+.|..
T Consensus 22 p~rIE~fDiSh~~G----~~~V~smVvf~~-g~p~k~~YR-rf~i~~---~g~DDy--------------a~m~Evl~RR 78 (220)
T 2nrt_A 22 PYRIEGIDISHLQG----KYTVASLVVFED-GFPKKGDYR-RYKIEQ---DHPDDY--------------ESIRTVVKRR 78 (220)
T ss_dssp CCEEEEEEEEEETT----TEEEEEEEEEET-TEECGGGCE-EEEEEC---SSCCHH--------------HHHHHHHHHH
T ss_pred CCEEEEEECCccCC----ccceEEEEEEeC-CccChhhCc-eeeCCC---CCCCHH--------------HHHHHHHHHH
Confidence 56899999999753 356777776555 3221 222 122221 111343 345555543
Q ss_pred HHHhcCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeec
Q 018166 154 FRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 211 (360)
Q Consensus 154 f~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~K~ 211 (360)
|... .+|+-|+| || +.||+. +.++++.+++- .+.+|-+.|+
T Consensus 79 ~~r~--~~PDLili--DG-GkgQl~--------~a~~vl~~lg~----~i~v~glaK~ 119 (220)
T 2nrt_A 79 YSKH--PLPNLLFV--DG-GIGQVN--------AAIEALKEIGK----DCPVVGLAKK 119 (220)
T ss_dssp HTTS--CCCSEEEE--SS-SHHHHH--------HHHHHHHHTTC----CCCEEEECTT
T ss_pred hccC--CCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCeEEEEECC
Confidence 4322 68988877 66 356654 56777777753 2456777776
No 19
>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, PR structure initiative; 1.80A {Archaeoglobus fulgidus}
Probab=44.26 E-value=17 Score=31.00 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHhHhhcCcCCCCcccccchHHHHHHHHHh
Q 018166 276 RFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 316 (360)
Q Consensus 276 ~~~~d~lq~lt~~Lc~~~~~~~~~i~lPaP~~yA~~~a~r~ 316 (360)
+++.++-.+++..+| .--++|.|+..||++|...
T Consensus 142 Gi~l~~A~~iv~~~~-------~~~riPEPlR~Ahlia~~~ 175 (184)
T 2qh9_A 142 GLTPSEAEKLVKASL-------IKGNMPEPVRISHLVASAI 175 (184)
T ss_dssp SSCHHHHHHHHHHHC-------SSSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc-------ccCCCchhHHHHHHHHHhh
Confidence 489999999988865 2247999999999999654
No 20
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=24.44 E-value=2.8e+02 Score=24.16 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=52.2
Q ss_pred CeEEEEEeecCCCCCCCCCCcEEEEEEeeCCCCcc--cceeEEEEccCchhhhhhhhhccCCCCCccchhHHHHHHHHHH
Q 018166 77 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVT--KYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 154 (360)
Q Consensus 77 ~tmiiGidvsh~~~~~~~~~si~avvaS~d~~~~~--~y~~~~~~q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~L~~f 154 (360)
|.-|-++|+||-.. .-.++++|.-.| .... .|- .+.... .+-.+|+ ..+.+++.......
T Consensus 14 p~rIE~fDiSh~~G----~~~V~smVvf~~-g~p~k~~YR-~f~i~~--~~g~DDy----------a~m~Evl~RR~~r~ 75 (226)
T 3c65_A 14 PRRIEAFDNSNIYG----ADPVSALVVFLD-GKPAKKEYR-KYKVKT--VAGPNDY----------ETMREVVRRRYTRV 75 (226)
T ss_dssp CSEEEEEEEEESSS----SSCEEEEEEEET-TEECGGGCE-EEECCC--CCTTCHH----------HHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccCC----cCceEEEEEEeC-CccChhhCc-eeecCC--CCCCcHH----------HHHHHHHHHHHhhh
Confidence 67899999999753 356777776555 3221 121 112221 0111332 11244444333333
Q ss_pred HHhcCCCCceEEEeecCCCchhHHHHHHHHHHHHHHHH-HhhcCCCCCCEEEEEEeec
Q 018166 155 RRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQAC-ASLEEGYAPPVTFVVVQKR 211 (360)
Q Consensus 155 ~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~-~~~~~~~~p~it~Ivv~K~ 211 (360)
.+....+|+-|+| || +.||+. +.++++ .+++- .+.+|-+.|.
T Consensus 76 ~~e~~~~PDLili--DG-GkgQl~--------~a~~vl~~~lg~----~i~v~glaK~ 118 (226)
T 3c65_A 76 LKEGLPLPDLIII--DG-GKGHLS--------AVRDVLENELGL----DVPLAGLAKD 118 (226)
T ss_dssp HHHTCCCCSEEEE--SS-CHHHHH--------HHHHHHHHTSCC----CCCEEEC---
T ss_pred hcccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHhcCC----CceEEEEEcC
Confidence 2333368998887 66 456654 567788 47743 2446666674
No 21
>1nyc_A Staphostatin B, cysteine protease inhibitor; SSPC, hydrolase inhibitor; 1.40A {Staphylococcus aureus subsp} SCOP: b.61.2.2 PDB: 1pxv_C 1y4h_C 1qwx_A
Probab=23.96 E-value=56 Score=24.23 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=15.1
Q ss_pred EEE-eecCCccccccceeEEEE
Q 018166 251 FYL-NSHAGIQGTSRPTHYHVL 271 (360)
Q Consensus 251 F~L-~s~~~~~GTarP~~Y~vl 271 (360)
.|+ .|....-||+||.+|.-|
T Consensus 89 i~~qts~k~~~gtsrpi~ye~l 110 (111)
T 1nyc_A 89 ILMQTSSKQGIGTSRPIVYERL 110 (111)
T ss_dssp EEEEEEESSSSCCCCCEEEEEC
T ss_pred EEEEeecccCcCccCceEeeec
Confidence 344 445566799999999754
No 22
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=23.82 E-value=28 Score=33.18 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=21.2
Q ss_pred hhcCcCCCCcccccchHHHHHHHHHhhh
Q 018166 291 YTYARCTRSVSIVPPAYYAHLAAFRARY 318 (360)
Q Consensus 291 ~~~~~~~~~i~lPaP~~yA~~~a~r~~~ 318 (360)
|.|..--.+--+|+|++|||++++|...
T Consensus 143 FGYA~~ET~elMPlpi~lAH~L~~rla~ 170 (407)
T 3s82_A 143 FGYAINDTPERMPLPIALAHRLSRRLTE 170 (407)
T ss_dssp EEEEETTSTTSSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCcccCchHHHHHHHHHHHHHH
Confidence 4555445677899999999999977643
No 23
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=23.35 E-value=29 Score=32.95 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=20.4
Q ss_pred hhcCcCCCCcccccchHHHHHHHHHhhh
Q 018166 291 YTYARCTRSVSIVPPAYYAHLAAFRARY 318 (360)
Q Consensus 291 ~~~~~~~~~i~lPaP~~yA~~~a~r~~~ 318 (360)
|.|..--.+--+|+|++|||++++|...
T Consensus 131 FGYA~~ET~elMPlpi~lAH~L~~rl~~ 158 (399)
T 3iml_A 131 FGYACDETPELMPLPIHLSHRLVERQAN 158 (399)
T ss_dssp EEEEETTSTTSCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccccCCcHHHHHHHHHHHHHH
Confidence 4444444567799999999999977643
No 24
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=22.44 E-value=31 Score=32.61 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=20.2
Q ss_pred hhcCcCCCCcccccchHHHHHHHHHhhh
Q 018166 291 YTYARCTRSVSIVPPAYYAHLAAFRARY 318 (360)
Q Consensus 291 ~~~~~~~~~i~lPaP~~yA~~~a~r~~~ 318 (360)
|.|..--.+--+|+|++|||++++|...
T Consensus 123 FGYA~~ET~e~MPlpi~lAh~L~~rl~~ 150 (383)
T 1p7l_A 123 FGYATNETDVLMPAPITYAHRLVQRQAE 150 (383)
T ss_dssp EEEEETTSTTSCCHHHHHHHHHHHHHHH
T ss_pred eEEecCCCcccCchHHHHHHHHHHHHHH
Confidence 3344444567799999999999877644
No 25
>3nqi_A Putative lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.87A {Bacteroides fragilis}
Probab=21.80 E-value=48 Score=29.47 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCC-CCceEEEee
Q 018166 147 IRELLIAFRRSTNF-KPHRIIFYR 169 (360)
Q Consensus 147 ~~~~L~~f~~~~~~-~P~~IIiyR 169 (360)
|+.+|.+|+..+|. +|++|+|.-
T Consensus 196 Is~~l~aFk~k~G~~~PtkI~V~a 219 (246)
T 3nqi_A 196 ISQILREYTLKSGQTKPAKITIVA 219 (246)
T ss_dssp CHHHHHHHHHHHCCSSCSEEEEEE
T ss_pred HHHHHHHHHHhcCCcCCcEEEEEE
Confidence 46889999999986 899999963
No 26
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=21.79 E-value=1e+02 Score=28.36 Aligned_cols=56 Identities=23% Similarity=0.191 Sum_probs=37.7
Q ss_pred EEEEEcCCCCc--hHHHHHHhhhhcCceeeeeeccccccchhhHHHHHHHHHHhh--cCCce
Q 018166 2 LIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK--VGGRN 59 (360)
Q Consensus 2 vl~ilp~~~~~--Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~lkinaK--lGG~n 59 (360)
.++++-++..+ |-+.|...+.+.||.+..+.... .....-+.+.+.++|.- .-|+.
T Consensus 57 avIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~--~~se~ell~~I~~LN~D~~V~GIl 116 (303)
T 4b4u_A 57 ATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQ--ETTTEQLLAEIEKLNANPDVHGIL 116 (303)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECT--TCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCc--cCCHHHHHHHHHHhcCCCCccEEE
Confidence 34445554333 99999888899999999888753 12334466778888874 44554
No 27
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A*
Probab=21.73 E-value=33 Score=32.60 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=20.2
Q ss_pred hhcCcCCCCcccccchHHHHHHHHHhhh
Q 018166 291 YTYARCTRSVSIVPPAYYAHLAAFRARY 318 (360)
Q Consensus 291 ~~~~~~~~~i~lPaP~~yA~~~a~r~~~ 318 (360)
|.|..--.+--+|+|++|||++++|...
T Consensus 140 FGYAt~ET~elMPlpi~lAh~L~~rla~ 167 (396)
T 2p02_A 140 FGYATDETEECMPLTIVLAHKLNAKLAE 167 (396)
T ss_dssp EEEEETTSTTSSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcccCChHHHHHHHHHHHHHH
Confidence 3344344567799999999999877644
No 28
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica}
Probab=21.52 E-value=33 Score=32.68 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=20.5
Q ss_pred hhcCcCCCCcccccchHHHHHHHHHhhh
Q 018166 291 YTYARCTRSVSIVPPAYYAHLAAFRARY 318 (360)
Q Consensus 291 ~~~~~~~~~i~lPaP~~yA~~~a~r~~~ 318 (360)
|.|..--.+--+|+|++|||++++|...
T Consensus 144 FGYAtdET~elMPlpi~lAH~L~~rla~ 171 (415)
T 3so4_A 144 FGYATDESKEMMPLTHVLSTKLILRLQE 171 (415)
T ss_dssp EEEEETTSTTSSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCcccCCcHHHHHHHHHHHHHH
Confidence 4444444567799999999999977643
No 29
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=20.99 E-value=32 Score=26.85 Aligned_cols=14 Identities=43% Similarity=0.776 Sum_probs=11.5
Q ss_pred cCCCCceEEEeecC
Q 018166 158 TNFKPHRIIFYRDG 171 (360)
Q Consensus 158 ~~~~P~~IIiyRdG 171 (360)
.+..|.+|+|||.-
T Consensus 62 ~g~~p~rI~lYR~P 75 (114)
T 3e11_A 62 GGVLPDRIIIYRNT 75 (114)
T ss_dssp SCBCCEEEEEEHHH
T ss_pred CCCCCCEEEEehHH
Confidence 45789999999963
No 30
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=20.14 E-value=2.8e+02 Score=21.91 Aligned_cols=40 Identities=13% Similarity=-0.001 Sum_probs=28.2
Q ss_pred CCccchhHHHHHHHHHHHHhc-CCCCceEEEeecCCCchhH
Q 018166 138 QRGLVHGGMIRELLIAFRRST-NFKPHRIIFYRDGVSEGQF 177 (360)
Q Consensus 138 ~~~~~~~~~~~~~L~~f~~~~-~~~P~~IIiyRdGvsegq~ 177 (360)
..++.+.+-+..+++.+.... ...|+.||++-||.+.+.-
T Consensus 79 ~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~ 119 (182)
T 1shu_X 79 VGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLV 119 (182)
T ss_dssp CSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTH
T ss_pred CCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCC
Confidence 344556777778877776653 3567888999999876543
Done!