Query 018167
Match_columns 360
No_of_seqs 213 out of 1490
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3958 Transketolase, C-termi 100.0 3E-78 6.5E-83 552.9 30.1 300 37-358 4-312 (312)
2 COG0022 AcoB Pyruvate/2-oxoglu 100.0 4.2E-78 9E-83 555.6 30.6 320 40-360 2-324 (324)
3 CHL00144 odpB pyruvate dehydro 100.0 1.6E-74 3.5E-79 556.3 35.4 318 38-359 2-324 (327)
4 PLN02683 pyruvate dehydrogenas 100.0 2.9E-74 6.2E-79 559.7 37.0 325 34-359 21-351 (356)
5 PTZ00182 3-methyl-2-oxobutanat 100.0 5.9E-74 1.3E-78 557.3 34.9 321 37-358 32-355 (355)
6 PRK09212 pyruvate dehydrogenas 100.0 1.4E-73 2.9E-78 550.5 36.5 320 38-359 2-324 (327)
7 PRK11892 pyruvate dehydrogenas 100.0 5.9E-73 1.3E-77 565.2 35.7 320 37-358 139-462 (464)
8 PLN02225 1-deoxy-D-xylulose-5- 100.0 2.1E-67 4.6E-72 540.6 35.4 304 39-358 380-690 (701)
9 COG1154 Dxs Deoxyxylulose-5-ph 100.0 3.1E-65 6.6E-70 506.2 32.6 304 37-359 313-623 (627)
10 KOG0524 Pyruvate dehydrogenase 100.0 1E-64 2.2E-69 456.3 25.8 325 33-359 28-359 (359)
11 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 5.2E-64 1.1E-68 519.5 34.9 301 39-358 309-616 (617)
12 KOG0525 Branched chain alpha-k 100.0 1.4E-64 3E-69 449.6 20.7 323 38-360 39-362 (362)
13 PLN02582 1-deoxy-D-xylulose-5- 100.0 9E-63 1.9E-67 509.7 35.3 303 39-358 355-666 (677)
14 PRK12571 1-deoxy-D-xylulose-5- 100.0 2.3E-62 5.1E-67 508.7 34.4 305 39-360 318-629 (641)
15 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.7E-61 3.6E-66 498.1 32.8 297 39-359 277-581 (581)
16 PRK05444 1-deoxy-D-xylulose-5- 100.0 4E-60 8.6E-65 489.4 33.3 294 40-358 279-580 (580)
17 PLN02234 1-deoxy-D-xylulose-5- 100.0 1.3E-59 2.8E-64 482.5 32.2 273 39-327 356-632 (641)
18 TIGR00232 tktlase_bact transke 100.0 9E-54 1.9E-58 445.7 27.9 295 36-358 345-653 (653)
19 PRK12753 transketolase; Review 100.0 2E-53 4.4E-58 443.0 29.5 294 36-358 351-663 (663)
20 KOG0523 Transketolase [Carbohy 100.0 5.9E-54 1.3E-58 423.5 20.2 297 40-359 320-626 (632)
21 PRK05899 transketolase; Review 100.0 6.4E-53 1.4E-57 439.3 23.0 289 38-358 317-624 (624)
22 PTZ00089 transketolase; Provis 100.0 1.7E-52 3.6E-57 436.8 24.5 295 37-359 352-659 (661)
23 PLN02790 transketolase 100.0 4.8E-52 1E-56 432.8 27.5 292 38-358 342-654 (654)
24 PRK12754 transketolase; Review 100.0 5.4E-52 1.2E-56 430.2 25.4 297 37-358 352-663 (663)
25 TIGR03186 AKGDH_not_PDH alpha- 100.0 5.5E-48 1.2E-52 404.8 27.0 301 37-359 487-859 (889)
26 PRK09405 aceE pyruvate dehydro 100.0 3.2E-47 7E-52 399.1 30.3 301 37-359 492-862 (891)
27 PRK13012 2-oxoacid dehydrogena 100.0 1.8E-44 3.9E-49 379.8 28.1 293 36-359 499-867 (896)
28 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 7.9E-44 1.7E-48 311.7 17.0 165 44-210 1-167 (167)
29 PRK09404 sucA 2-oxoglutarate d 100.0 1.3E-41 2.8E-46 360.2 29.2 316 5-332 547-899 (924)
30 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 3.2E-41 7E-46 355.7 30.4 318 4-332 547-905 (929)
31 COG0021 TktA Transketolase [Ca 100.0 6.3E-41 1.4E-45 334.8 25.0 299 37-359 351-663 (663)
32 cd07033 TPP_PYR_DXS_TK_like Py 100.0 1.5E-38 3.3E-43 276.2 17.5 155 44-210 1-156 (156)
33 PF02779 Transket_pyr: Transke 100.0 2.1E-38 4.6E-43 281.1 15.0 168 38-215 1-177 (178)
34 smart00861 Transket_pyr Transk 100.0 7.9E-32 1.7E-36 236.7 15.4 155 41-210 1-166 (168)
35 PF02780 Transketolase_C: Tran 99.9 1.2E-25 2.6E-30 187.8 3.3 120 230-350 1-124 (124)
36 PRK07119 2-ketoisovalerate fer 99.9 5.4E-20 1.2E-24 179.3 29.0 273 56-359 20-350 (352)
37 PRK05261 putative phosphoketol 99.9 8.9E-21 1.9E-25 198.0 21.2 221 38-273 389-651 (785)
38 PRK08659 2-oxoglutarate ferred 99.9 7.6E-19 1.7E-23 172.6 28.6 248 81-357 45-375 (376)
39 TIGR03336 IOR_alpha indolepyru 99.8 3.2E-19 6.9E-24 185.5 25.5 246 87-357 47-335 (595)
40 PRK09627 oorA 2-oxoglutarate-a 99.8 7.7E-18 1.7E-22 165.2 26.8 279 43-357 9-375 (375)
41 PRK09622 porA pyruvate flavodo 99.8 5.2E-16 1.1E-20 154.2 31.1 288 42-358 15-381 (407)
42 KOG0450 2-oxoglutarate dehydro 99.8 3E-17 6.6E-22 164.6 19.0 303 3-315 611-971 (1017)
43 PRK08366 vorA 2-ketoisovalerat 99.7 3.1E-15 6.7E-20 147.5 26.6 209 92-311 55-332 (390)
44 PRK12270 kgd alpha-ketoglutara 99.7 7.3E-16 1.6E-20 160.8 22.8 314 4-331 850-1201(1228)
45 TIGR03710 OAFO_sf 2-oxoacid:ac 99.7 2.7E-15 5.8E-20 154.9 25.3 217 87-313 238-537 (562)
46 PRK08367 porA pyruvate ferredo 99.7 7.8E-14 1.7E-18 137.8 27.7 285 43-358 10-373 (394)
47 KOG0451 Predicted 2-oxoglutara 99.6 3.6E-15 7.8E-20 146.9 13.8 320 4-336 524-892 (913)
48 TIGR00759 aceE pyruvate dehydr 99.6 6.2E-14 1.3E-18 147.2 23.8 293 38-359 487-856 (885)
49 COG0567 SucA 2-oxoglutarate de 99.4 8E-13 1.7E-17 138.2 13.9 303 3-315 527-865 (906)
50 cd06586 TPP_enzyme_PYR Pyrimid 99.4 7.6E-12 1.6E-16 107.5 13.3 119 81-209 31-153 (154)
51 COG4231 Indolepyruvate ferredo 99.4 1.8E-10 4E-15 116.6 24.2 246 86-359 58-354 (640)
52 COG2609 AceE Pyruvate dehydrog 99.4 6.6E-11 1.4E-15 120.1 20.3 292 37-358 489-857 (887)
53 TIGR02176 pyruv_ox_red pyruvat 99.3 3.9E-10 8.5E-15 124.8 27.3 218 87-315 53-346 (1165)
54 COG0674 PorA Pyruvate:ferredox 99.3 1.9E-09 4.1E-14 105.8 24.1 239 57-307 20-326 (365)
55 PRK13030 2-oxoacid ferredoxin 98.9 1.8E-07 3.9E-12 102.8 23.9 298 40-358 20-394 (1159)
56 PRK09193 indolepyruvate ferred 98.8 1.8E-06 3.8E-11 95.0 25.0 250 86-358 82-402 (1165)
57 PRK13029 2-oxoacid ferredoxin 98.8 1E-06 2.2E-11 96.6 22.3 250 86-358 85-416 (1186)
58 COG3957 Phosphoketolase [Carbo 98.6 1.1E-06 2.3E-11 90.3 15.5 227 43-277 404-668 (793)
59 PF01855 POR_N: Pyruvate flavo 98.1 1.3E-05 2.9E-10 73.9 8.7 116 88-213 38-157 (230)
60 PF03894 XFP: D-xylulose 5-pho 97.2 0.01 2.2E-07 51.9 12.9 152 44-199 2-178 (179)
61 cd07034 TPP_PYR_PFOR_IOR-alpha 97.2 0.02 4.3E-07 49.4 14.9 111 85-208 41-158 (160)
62 cd07035 TPP_PYR_POX_like Pyrim 96.8 0.015 3.2E-07 49.8 10.9 113 86-209 35-154 (155)
63 TIGR03297 Ppyr-DeCO2ase phosph 96.6 0.019 4.1E-07 56.6 10.8 125 79-213 20-155 (361)
64 PF02776 TPP_enzyme_N: Thiamin 96.4 0.029 6.3E-07 49.1 9.7 157 41-215 2-166 (172)
65 PRK07092 benzoylformate decarb 96.0 0.54 1.2E-05 48.6 18.4 152 40-214 12-174 (530)
66 TIGR03457 sulphoacet_xsc sulfo 95.9 0.42 9.1E-06 50.0 17.4 118 86-215 40-164 (579)
67 PRK07710 acetolactate synthase 95.6 0.4 8.6E-06 50.2 15.7 154 40-213 16-177 (571)
68 TIGR02418 acolac_catab acetola 95.6 0.23 5E-06 51.5 13.8 170 86-267 37-226 (539)
69 PRK07525 sulfoacetaldehyde ace 95.6 0.47 1E-05 49.8 16.2 156 40-215 6-168 (588)
70 PRK12474 hypothetical protein; 95.6 2.4 5.3E-05 43.7 21.2 158 38-214 3-168 (518)
71 cd07039 TPP_PYR_POX Pyrimidine 95.6 0.22 4.7E-06 43.4 11.5 114 86-211 39-159 (164)
72 PRK07979 acetolactate synthase 95.5 0.74 1.6E-05 48.2 17.3 116 86-213 43-166 (574)
73 PRK08199 thiamine pyrophosphat 95.5 0.69 1.5E-05 48.2 16.9 118 86-215 47-172 (557)
74 PRK08322 acetolactate synthase 95.5 0.32 7E-06 50.4 14.4 118 86-215 39-164 (547)
75 PRK06466 acetolactate synthase 95.5 0.58 1.3E-05 48.9 16.2 116 86-213 43-166 (574)
76 PRK07524 hypothetical protein; 95.4 1.1 2.3E-05 46.5 18.0 117 86-214 40-167 (535)
77 PRK06457 pyruvate dehydrogenas 95.4 0.37 8.1E-06 50.1 14.4 117 86-214 40-163 (549)
78 TIGR03845 sulfopyru_alph sulfo 95.3 0.56 1.2E-05 40.6 13.2 112 86-211 35-155 (157)
79 TIGR00118 acolac_lg acetolacta 95.3 0.85 1.8E-05 47.5 16.6 116 86-213 40-163 (558)
80 PRK07064 hypothetical protein; 95.3 1.3 2.8E-05 46.0 17.9 116 86-213 42-168 (544)
81 PRK07418 acetolactate synthase 95.0 1.4 3E-05 46.6 17.6 160 37-214 16-185 (616)
82 PRK07282 acetolactate synthase 95.0 0.85 1.8E-05 47.7 15.7 155 40-213 10-172 (566)
83 PRK08266 hypothetical protein; 94.9 1.2 2.7E-05 46.1 16.6 157 40-214 4-171 (542)
84 PRK05858 hypothetical protein; 94.8 0.97 2.1E-05 46.9 15.5 116 86-213 43-166 (542)
85 cd02001 TPP_ComE_PpyrDC Thiami 94.7 0.93 2E-05 39.1 12.9 113 84-206 34-150 (157)
86 PRK08155 acetolactate synthase 94.7 1.5 3.2E-05 45.8 16.5 116 86-213 52-175 (564)
87 PRK06965 acetolactate synthase 94.6 1.5 3.3E-05 46.0 16.5 155 40-213 21-183 (587)
88 PRK09124 pyruvate dehydrogenas 94.5 1.8 3.9E-05 45.3 16.8 155 41-214 4-165 (574)
89 TIGR01504 glyox_carbo_lig glyo 94.5 0.82 1.8E-05 48.0 14.1 117 86-214 42-167 (588)
90 PRK08979 acetolactate synthase 94.5 1.8 3.9E-05 45.3 16.6 154 41-213 5-166 (572)
91 PRK08617 acetolactate synthase 94.4 2 4.3E-05 44.7 16.7 156 40-215 5-168 (552)
92 PRK11269 glyoxylate carboligas 94.4 1.4 3.1E-05 46.2 15.7 156 40-214 4-168 (591)
93 PRK07586 hypothetical protein; 94.3 0.9 2E-05 46.8 13.7 170 86-267 40-228 (514)
94 cd07037 TPP_PYR_MenD Pyrimidin 94.2 0.5 1.1E-05 41.1 9.9 111 86-207 36-159 (162)
95 PRK06048 acetolactate synthase 94.1 1.3 2.8E-05 46.2 14.6 116 86-213 46-169 (561)
96 PRK08611 pyruvate oxidase; Pro 94.1 1.4 3E-05 46.1 14.9 158 40-215 4-168 (576)
97 PRK06456 acetolactate synthase 94.0 1 2.2E-05 47.0 13.7 116 87-214 45-168 (572)
98 PRK06725 acetolactate synthase 93.9 1.2 2.6E-05 46.6 14.0 154 40-213 15-176 (570)
99 PRK07789 acetolactate synthase 93.9 0.87 1.9E-05 48.1 13.0 117 86-214 70-194 (612)
100 PRK09259 putative oxalyl-CoA d 93.9 0.72 1.6E-05 48.2 12.2 118 86-215 48-175 (569)
101 PRK06882 acetolactate synthase 93.7 3.7 8.1E-05 42.9 17.1 116 86-213 43-166 (574)
102 PRK08327 acetolactate synthase 93.6 2.4 5.1E-05 44.4 15.5 116 87-214 52-184 (569)
103 PRK06112 acetolactate synthase 93.5 1.2 2.7E-05 46.5 13.2 118 86-215 50-175 (578)
104 PLN02573 pyruvate decarboxylas 93.5 2 4.2E-05 45.1 14.6 155 40-214 16-185 (578)
105 PRK08978 acetolactate synthase 93.4 1.5 3.2E-05 45.6 13.6 116 86-213 39-162 (548)
106 COG0028 IlvB Thiamine pyrophos 93.1 1.4 3E-05 46.0 12.6 176 77-266 33-230 (550)
107 TIGR02720 pyruv_oxi_spxB pyruv 92.9 3.1 6.8E-05 43.5 15.0 116 86-213 39-161 (575)
108 PRK09107 acetolactate synthase 92.7 2.1 4.6E-05 45.0 13.5 116 86-213 50-173 (595)
109 TIGR02177 PorB_KorB 2-oxoacid: 92.5 2.6 5.7E-05 40.2 12.6 144 41-206 11-181 (287)
110 COG4032 Predicted thiamine-pyr 92.4 0.19 4.1E-06 42.5 4.2 113 88-213 43-166 (172)
111 cd02014 TPP_POX Thiamine pyrop 92.4 2.5 5.5E-05 37.0 11.8 116 79-206 36-168 (178)
112 cd03376 TPP_PFOR_porB_like Thi 92.3 5.2 0.00011 36.9 14.2 30 177-206 166-195 (235)
113 PRK11866 2-oxoacid ferredoxin 92.3 3.1 6.8E-05 39.5 12.8 146 42-206 18-187 (279)
114 PRK11864 2-ketoisovalerate fer 92.2 2 4.4E-05 41.2 11.4 37 170-206 166-202 (300)
115 cd07038 TPP_PYR_PDC_IPDC_like 92.1 2.3 5.1E-05 36.8 11.0 111 86-209 36-161 (162)
116 cd02009 TPP_SHCHC_synthase Thi 92.1 1.7 3.6E-05 38.1 10.1 112 84-206 40-170 (175)
117 TIGR03254 oxalate_oxc oxalyl-C 92.1 1.3 2.7E-05 46.2 10.9 119 86-215 41-168 (554)
118 cd02004 TPP_BZL_OCoD_HPCL Thia 91.9 1.2 2.6E-05 38.7 9.0 111 85-206 38-167 (172)
119 PLN02470 acetolactate synthase 91.8 1.4 3.1E-05 46.1 11.0 155 40-213 13-175 (585)
120 CHL00099 ilvB acetohydroxyacid 91.4 4.4 9.6E-05 42.5 14.1 115 87-213 53-175 (585)
121 cd03375 TPP_OGFOR Thiamine pyr 91.3 6.3 0.00014 35.1 13.1 25 182-206 155-179 (193)
122 cd02010 TPP_ALS Thiamine pyrop 91.2 3.8 8.3E-05 35.9 11.4 111 85-206 38-165 (177)
123 PRK08527 acetolactate synthase 91.2 4.8 0.0001 42.0 14.0 116 86-213 42-165 (563)
124 PRK08273 thiamine pyrophosphat 91.1 3.5 7.7E-05 43.4 13.0 157 41-214 4-167 (597)
125 PRK06154 hypothetical protein; 91.0 4.3 9.4E-05 42.4 13.5 153 39-214 19-179 (565)
126 TIGR03393 indolpyr_decarb indo 90.3 3.3 7.2E-05 42.9 11.9 118 86-215 40-170 (539)
127 TIGR03394 indol_phenyl_DC indo 90.3 2.8 6.1E-05 43.5 11.3 118 86-214 39-168 (535)
128 PRK06276 acetolactate synthase 89.7 3.7 7.9E-05 43.1 11.7 116 86-213 39-162 (586)
129 cd02018 TPP_PFOR Thiamine pyro 89.4 13 0.00028 34.4 13.8 32 175-206 166-198 (237)
130 PRK11869 2-oxoacid ferredoxin 89.2 5.3 0.00011 38.0 11.3 146 41-206 18-188 (280)
131 PRK11865 pyruvate ferredoxin o 89.2 5 0.00011 38.5 11.1 37 170-206 170-206 (299)
132 cd02003 TPP_IolD Thiamine pyro 89.2 7.9 0.00017 34.8 12.0 35 171-206 145-179 (205)
133 PRK07449 2-succinyl-5-enolpyru 89.2 4.3 9.4E-05 42.3 11.8 116 86-212 48-175 (568)
134 PF02775 TPP_enzyme_C: Thiamin 88.6 3.8 8.2E-05 34.8 9.1 111 85-206 18-151 (153)
135 PRK11867 2-oxoglutarate ferred 88.5 11 0.00023 36.0 13.0 144 41-206 27-197 (286)
136 PRK06546 pyruvate dehydrogenas 88.5 4.1 8.9E-05 42.7 11.1 117 86-214 42-165 (578)
137 TIGR03846 sulfopy_beta sulfopy 88.5 11 0.00024 33.3 12.2 144 43-207 1-152 (181)
138 PRK08266 hypothetical protein; 88.5 11 0.00023 39.2 14.0 110 85-206 392-520 (542)
139 cd03371 TPP_PpyrDC Thiamine py 88.0 18 0.00038 32.1 13.3 111 85-206 41-158 (188)
140 PF09363 XFP_C: XFP C-terminal 87.6 3 6.4E-05 37.6 7.9 73 239-316 35-120 (203)
141 PRK09628 oorB 2-oxoglutarate-a 87.0 23 0.0005 33.6 14.1 162 23-206 5-196 (277)
142 cd02015 TPP_AHAS Thiamine pyro 86.7 6.9 0.00015 34.4 9.9 111 85-206 40-169 (186)
143 PRK06163 hypothetical protein; 86.4 24 0.00053 31.7 13.6 146 43-206 15-168 (202)
144 cd03372 TPP_ComE Thiamine pyro 85.7 24 0.00052 31.0 12.9 109 85-206 35-150 (179)
145 TIGR03297 Ppyr-DeCO2ase phosph 85.5 40 0.00086 33.3 15.6 112 85-207 214-332 (361)
146 PRK08155 acetolactate synthase 85.4 7.1 0.00015 40.7 10.7 111 85-206 409-538 (564)
147 cd00568 TPP_enzymes Thiamine p 85.2 8.1 0.00017 32.9 9.4 99 97-206 50-164 (168)
148 cd02013 TPP_Xsc_like Thiamine 84.9 6.6 0.00014 35.0 8.9 111 85-206 43-174 (196)
149 cd02008 TPP_IOR_alpha Thiamine 84.3 11 0.00024 32.9 9.9 99 99-206 57-172 (178)
150 cd02006 TPP_Gcl Thiamine pyrop 83.8 14 0.00031 33.0 10.6 116 79-206 42-189 (202)
151 PRK06048 acetolactate synthase 83.0 12 0.00025 39.1 11.1 111 85-206 404-533 (561)
152 PRK06457 pyruvate dehydrogenas 82.5 18 0.00039 37.6 12.2 111 85-206 386-514 (549)
153 TIGR00173 menD 2-succinyl-5-en 82.3 6.1 0.00013 39.8 8.5 116 86-212 39-167 (432)
154 TIGR03336 IOR_alpha indolepyru 81.5 13 0.00027 39.3 10.7 114 85-207 395-526 (595)
155 TIGR03254 oxalate_oxc oxalyl-C 81.0 13 0.00028 38.7 10.5 146 46-206 371-533 (554)
156 cd02002 TPP_BFDC Thiamine pyro 81.0 35 0.00075 29.5 11.8 34 172-206 141-174 (178)
157 PRK08617 acetolactate synthase 78.9 14 0.00031 38.4 10.0 144 45-206 369-531 (552)
158 PRK05778 2-oxoglutarate ferred 77.9 14 0.00031 35.5 8.9 143 41-206 28-198 (301)
159 COG0075 Serine-pyruvate aminot 77.8 8.1 0.00018 38.4 7.4 82 233-317 75-161 (383)
160 KOG1185 Thiamine pyrophosphate 77.8 35 0.00075 35.0 11.7 183 5-206 334-555 (571)
161 cd00860 ThrRS_anticodon ThrRS 77.3 12 0.00027 28.1 7.0 58 240-300 3-62 (91)
162 PRK06546 pyruvate dehydrogenas 76.9 20 0.00044 37.5 10.6 109 85-206 398-525 (578)
163 cd03033 ArsC_15kD Arsenate Red 76.3 7 0.00015 31.8 5.5 49 240-290 1-49 (113)
164 KOG1185 Thiamine pyrophosphate 76.0 90 0.0019 32.1 14.0 158 34-211 8-173 (571)
165 PRK06276 acetolactate synthase 75.7 32 0.0007 36.1 11.7 111 85-206 409-538 (586)
166 PRK08527 acetolactate synthase 74.3 25 0.00055 36.6 10.4 111 85-206 404-533 (563)
167 PRK07710 acetolactate synthase 74.0 26 0.00056 36.7 10.4 111 85-206 414-543 (571)
168 PRK06882 acetolactate synthase 73.8 35 0.00077 35.6 11.4 146 45-206 376-541 (574)
169 COG1393 ArsC Arsenate reductas 73.7 11 0.00023 31.0 5.9 49 241-291 3-51 (117)
170 cd01481 vWA_collagen_alpha3-VI 73.7 8.4 0.00018 33.3 5.7 55 241-298 110-164 (165)
171 PRK09107 acetolactate synthase 73.7 39 0.00085 35.5 11.7 111 85-206 420-549 (595)
172 TIGR00118 acolac_lg acetolacta 73.1 22 0.00049 36.9 9.7 146 45-206 367-531 (558)
173 cd02012 TPP_TK Thiamine pyroph 72.9 46 0.001 30.9 10.9 101 97-207 109-223 (255)
174 cd02005 TPP_PDC_IPDC Thiamine 72.5 47 0.001 29.1 10.3 145 46-206 7-169 (183)
175 PRK08273 thiamine pyrophosphat 72.2 37 0.0008 35.7 11.1 35 171-206 507-541 (597)
176 PRK08322 acetolactate synthase 71.9 41 0.0009 34.8 11.3 111 85-206 396-523 (547)
177 cd03028 GRX_PICOT_like Glutare 71.8 10 0.00023 29.2 5.3 67 238-310 7-82 (90)
178 PRK08978 acetolactate synthase 71.6 44 0.00096 34.7 11.4 111 85-206 391-520 (548)
179 COG4231 Indolepyruvate ferredo 71.6 15 0.00031 38.7 7.5 106 97-210 432-553 (640)
180 PF10740 DUF2529: Protein of u 71.4 11 0.00024 33.1 5.7 80 187-271 24-115 (172)
181 PF03960 ArsC: ArsC family; I 70.8 6.7 0.00015 31.5 4.1 41 250-291 6-46 (110)
182 PRK09259 putative oxalyl-CoA d 70.4 33 0.00071 35.8 10.2 147 45-206 377-541 (569)
183 PRK06466 acetolactate synthase 70.3 51 0.0011 34.5 11.6 111 85-206 413-543 (574)
184 TIGR02418 acolac_catab acetola 68.9 50 0.0011 34.1 11.1 147 44-206 362-525 (539)
185 cd03035 ArsC_Yffb Arsenate Red 68.7 11 0.00024 30.1 4.9 41 250-291 9-49 (105)
186 COG0028 IlvB Thiamine pyrophos 68.3 44 0.00095 35.0 10.5 149 43-206 361-526 (550)
187 cd02007 TPP_DXS Thiamine pyrop 67.9 88 0.0019 27.8 11.1 105 88-207 71-186 (195)
188 PRK06154 hypothetical protein; 67.7 71 0.0015 33.4 12.0 111 85-206 421-550 (565)
189 PRK06965 acetolactate synthase 67.6 39 0.00085 35.4 10.1 111 85-206 427-557 (587)
190 cd00859 HisRS_anticodon HisRS 67.4 23 0.00051 26.1 6.4 56 240-298 3-60 (91)
191 cd00858 GlyRS_anticodon GlyRS 67.2 25 0.00055 28.5 6.9 57 239-299 27-87 (121)
192 PRK07418 acetolactate synthase 67.0 59 0.0013 34.3 11.4 111 85-206 424-554 (616)
193 PRK08979 acetolactate synthase 66.9 54 0.0012 34.3 11.0 111 85-206 411-541 (572)
194 PF03358 FMN_red: NADPH-depend 65.8 19 0.00041 30.2 6.1 66 247-313 14-93 (152)
195 PRK10853 putative reductase; P 64.7 13 0.00028 30.5 4.7 40 250-290 10-49 (118)
196 cd03027 GRX_DEP Glutaredoxin ( 64.4 21 0.00045 26.0 5.3 66 240-308 2-68 (73)
197 PRK06112 acetolactate synthase 64.1 88 0.0019 32.7 11.9 109 87-206 429-555 (578)
198 TIGR00365 monothiol glutaredox 63.6 18 0.00039 28.4 5.1 72 237-310 10-86 (97)
199 PLN02980 2-oxoglutarate decarb 63.3 25 0.00053 41.8 8.2 114 86-210 340-466 (1655)
200 TIGR01504 glyox_carbo_lig glyo 63.1 26 0.00057 36.8 7.8 111 85-206 408-550 (588)
201 PRK07524 hypothetical protein; 63.1 87 0.0019 32.3 11.6 111 85-206 396-524 (535)
202 PRK07092 benzoylformate decarb 62.2 90 0.0019 32.2 11.4 111 85-206 398-525 (530)
203 PRK05858 hypothetical protein; 61.9 58 0.0013 33.8 10.0 111 85-206 397-525 (542)
204 PRK10026 arsenate reductase; P 61.3 19 0.0004 30.7 5.1 41 250-291 12-52 (141)
205 PRK06725 acetolactate synthase 61.1 54 0.0012 34.3 9.6 111 85-206 412-540 (570)
206 COG0426 FpaA Uncharacterized f 60.6 18 0.00039 36.0 5.6 70 240-313 248-320 (388)
207 CHL00099 ilvB acetohydroxyacid 60.6 1.5E+02 0.0034 31.0 13.0 111 85-206 420-550 (585)
208 TIGR01616 nitro_assoc nitrogen 60.6 18 0.0004 30.0 4.9 40 250-290 11-50 (126)
209 COG3961 Pyruvate decarboxylase 60.4 45 0.00097 34.5 8.3 144 58-217 20-176 (557)
210 PLN02470 acetolactate synthase 60.2 99 0.0021 32.4 11.4 111 85-206 416-552 (585)
211 COG0680 HyaD Ni,Fe-hydrogenase 60.1 24 0.00053 30.6 5.7 56 239-298 2-64 (160)
212 cd01080 NAD_bind_m-THF_DH_Cycl 59.9 26 0.00056 30.6 6.0 52 237-296 43-94 (168)
213 TIGR00014 arsC arsenate reduct 59.7 21 0.00045 28.9 5.0 41 250-291 9-49 (114)
214 cd03034 ArsC_ArsC Arsenate Red 59.6 21 0.00045 28.8 5.0 41 250-291 9-49 (112)
215 cd06062 H2MP_MemB-H2up Endopep 59.4 33 0.00073 28.9 6.5 54 241-298 1-61 (146)
216 PRK07789 acetolactate synthase 59.1 63 0.0014 34.1 9.8 111 85-206 437-571 (612)
217 TIGR02194 GlrX_NrdH Glutaredox 58.9 20 0.00044 26.0 4.4 55 250-306 9-64 (72)
218 PRK07449 2-succinyl-5-enolpyru 58.5 50 0.0011 34.4 8.8 98 98-206 430-544 (568)
219 PRK03767 NAD(P)H:quinone oxido 58.2 74 0.0016 28.2 8.8 68 246-315 12-94 (200)
220 PF03129 HGTP_anticodon: Antic 58.1 34 0.00074 26.0 5.8 56 240-298 1-61 (94)
221 cd00861 ProRS_anticodon_short 57.3 45 0.00098 25.2 6.4 57 240-299 3-64 (94)
222 PRK11269 glyoxylate carboligas 56.5 95 0.0021 32.6 10.6 111 85-206 409-551 (591)
223 TIGR02190 GlrX-dom Glutaredoxi 55.6 59 0.0013 24.1 6.6 73 236-313 5-78 (79)
224 cd06063 H2MP_Cyano-H2up This g 55.5 36 0.00079 28.7 6.0 54 241-298 1-60 (146)
225 PRK07586 hypothetical protein; 55.5 1.9E+02 0.0041 29.6 12.5 111 85-206 376-510 (514)
226 PRK09124 pyruvate dehydrogenas 55.2 1.1E+02 0.0025 31.8 10.9 111 85-206 398-525 (574)
227 cd00738 HGTP_anticodon HGTP an 54.7 49 0.0011 24.8 6.2 57 240-299 3-64 (94)
228 PRK13344 spxA transcriptional 53.6 28 0.00061 29.1 4.9 42 249-291 9-50 (132)
229 PF00258 Flavodoxin_1: Flavodo 53.0 24 0.00052 29.2 4.5 46 246-296 7-52 (143)
230 PF03102 NeuB: NeuB family; I 53.0 1.9E+02 0.0042 26.8 11.1 70 242-313 116-192 (241)
231 PF03610 EIIA-man: PTS system 52.9 1.2E+02 0.0025 24.3 10.3 106 241-354 2-115 (116)
232 PLN02790 transketolase 52.7 1.5E+02 0.0033 31.7 11.4 77 123-209 152-236 (654)
233 smart00226 LMWPc Low molecular 52.6 23 0.00051 29.4 4.3 87 255-359 45-139 (140)
234 cd03036 ArsC_like Arsenate Red 52.2 29 0.00064 27.8 4.7 40 250-290 9-48 (111)
235 PF01565 FAD_binding_4: FAD bi 51.9 1.3E+02 0.0028 24.5 8.8 28 180-207 3-30 (139)
236 PRK05899 transketolase; Review 51.5 1.8E+02 0.0039 30.9 11.7 40 168-208 203-245 (624)
237 KOG4044 Mitochondrial associat 51.4 1.6E+02 0.0034 26.0 9.1 106 191-299 42-165 (201)
238 cd02977 ArsC_family Arsenate R 50.2 39 0.00084 26.6 5.1 41 250-291 9-49 (105)
239 cd03032 ArsC_Spx Arsenate Redu 50.2 32 0.0007 27.7 4.7 41 249-290 9-49 (115)
240 KOG2862 Alanine-glyoxylate ami 49.8 88 0.0019 30.4 8.0 74 234-311 88-163 (385)
241 PRK10264 hydrogenase 1 maturat 49.7 50 0.0011 29.6 6.2 56 239-298 4-66 (195)
242 PRK08199 thiamine pyrophosphat 49.5 1.5E+02 0.0032 30.9 10.6 34 172-206 500-533 (557)
243 PRK07064 hypothetical protein; 49.5 1.1E+02 0.0023 31.7 9.6 111 85-206 396-523 (544)
244 PRK06756 flavodoxin; Provision 49.2 1.2E+02 0.0025 25.4 8.2 30 246-275 12-41 (148)
245 TIGR02189 GlrX-like_plant Glut 48.7 1E+02 0.0022 24.1 7.3 68 238-309 7-79 (99)
246 PF00289 CPSase_L_chain: Carba 48.5 70 0.0015 25.8 6.4 31 239-272 3-33 (110)
247 cd00006 PTS_IIA_man PTS_IIA, P 48.5 1.5E+02 0.0031 24.1 10.7 110 240-357 2-119 (122)
248 cd06070 H2MP_like-2 Putative [ 48.1 53 0.0012 27.5 5.8 50 243-298 2-55 (140)
249 PRK12559 transcriptional regul 47.9 42 0.00092 28.0 5.1 40 250-290 10-49 (131)
250 PF03853 YjeF_N: YjeF-related 47.8 60 0.0013 28.1 6.3 51 241-291 29-81 (169)
251 COG1945 Pyruvoyl-dependent arg 47.8 24 0.00052 30.6 3.6 81 259-354 28-117 (163)
252 PRK10466 hybD hydrogenase 2 ma 47.7 77 0.0017 27.3 7.0 55 240-298 2-63 (164)
253 PRK08327 acetolactate synthase 47.5 72 0.0016 33.3 7.9 149 39-206 384-562 (569)
254 PLN02409 serine--glyoxylate am 47.4 60 0.0013 32.1 7.1 75 235-312 81-162 (401)
255 PRK11544 hycI hydrogenase 3 ma 47.1 51 0.0011 28.3 5.6 56 241-298 3-63 (156)
256 KOG1184 Thiamine pyrophosphate 47.0 85 0.0018 32.4 7.8 143 57-216 19-175 (561)
257 PF12500 TRSP: TRSP domain C t 46.6 32 0.00069 29.8 4.2 32 237-268 56-87 (155)
258 cd00518 H2MP Hydrogenase speci 46.6 55 0.0012 27.2 5.7 52 243-298 2-59 (139)
259 COG1707 ACT domain-containing 46.5 1.8E+02 0.0038 25.7 8.6 87 238-328 83-174 (218)
260 TIGR00824 EIIA-man PTS system, 46.4 1.6E+02 0.0034 23.8 9.9 87 240-334 3-95 (116)
261 COG0655 WrbA Multimeric flavod 46.3 1E+02 0.0023 27.4 7.9 69 246-315 13-100 (207)
262 COG4981 Enoyl reductase domain 46.1 37 0.00081 35.2 5.2 52 125-184 160-219 (717)
263 PRK05444 1-deoxy-D-xylulose-5- 45.8 1.4E+02 0.0031 31.3 9.8 101 97-209 121-240 (580)
264 cd03418 GRX_GRXb_1_3_like Glut 45.5 62 0.0013 23.2 5.3 66 241-309 2-69 (75)
265 TIGR03457 sulphoacet_xsc sulfo 45.4 1.8E+02 0.0039 30.4 10.6 109 85-206 420-552 (579)
266 TIGR01617 arsC_related transcr 45.4 39 0.00085 27.3 4.5 43 248-291 7-49 (117)
267 TIGR00142 hycI hydrogenase mat 45.1 47 0.001 28.1 5.1 56 241-298 1-62 (146)
268 TIGR02364 dha_pts dihydroxyace 44.9 1.1E+02 0.0024 25.3 7.1 90 1-103 12-107 (125)
269 PRK07979 acetolactate synthase 44.8 1.9E+02 0.004 30.3 10.5 111 85-206 411-543 (574)
270 TIGR03181 PDH_E1_alph_x pyruva 44.6 1.2E+02 0.0026 29.6 8.4 31 175-206 207-241 (341)
271 TIGR03569 NeuB_NnaB N-acetylne 44.0 2.8E+02 0.0061 27.0 10.9 74 237-313 132-214 (329)
272 TIGR00072 hydrog_prot hydrogen 43.8 74 0.0016 26.7 6.1 52 243-298 2-60 (145)
273 cd06068 H2MP_like-1 Putative [ 43.6 72 0.0016 26.8 6.0 53 243-298 2-60 (144)
274 TIGR00130 frhD coenzyme F420-r 43.2 50 0.0011 28.1 5.0 59 239-298 3-69 (153)
275 cd00115 LMWPc Substituted upda 43.1 58 0.0012 27.1 5.3 87 255-359 49-141 (141)
276 PTZ00089 transketolase; Provis 43.1 2.5E+02 0.0054 30.1 11.2 89 111-209 150-247 (661)
277 COG1071 AcoA Pyruvate/2-oxoglu 42.9 1.6E+02 0.0034 29.1 8.9 35 171-206 218-256 (358)
278 TIGR02720 pyruv_oxi_spxB pyruv 42.6 3.4E+02 0.0074 28.3 12.1 109 85-206 398-527 (575)
279 PRK08611 pyruvate oxidase; Pro 42.5 2.6E+02 0.0057 29.2 11.2 111 85-206 398-525 (576)
280 PRK07525 sulfoacetaldehyde ace 42.4 1.9E+02 0.0041 30.4 10.1 111 85-206 425-557 (588)
281 PRK10638 glutaredoxin 3; Provi 42.2 78 0.0017 23.6 5.5 66 240-308 3-69 (83)
282 PRK00366 ispG 4-hydroxy-3-meth 42.0 2.5E+02 0.0054 27.7 10.0 77 278-359 89-167 (360)
283 PRK08105 flavodoxin; Provision 42.0 28 0.00062 29.6 3.3 34 243-276 5-42 (149)
284 PRK06703 flavodoxin; Provision 41.9 92 0.002 26.1 6.4 34 243-276 5-42 (151)
285 PRK12315 1-deoxy-D-xylulose-5- 41.8 2.7E+02 0.0058 29.3 11.1 109 88-208 109-240 (581)
286 PRK07308 flavodoxin; Validated 41.2 1.2E+02 0.0027 25.1 7.1 63 246-315 12-74 (146)
287 PRK12474 hypothetical protein; 41.1 2.4E+02 0.0053 28.9 10.6 146 45-206 345-514 (518)
288 PF02662 FlpD: Methyl-viologen 40.9 1.2E+02 0.0026 25.0 6.8 57 241-297 2-60 (124)
289 TIGR03393 indolpyr_decarb indo 40.4 3.8E+02 0.0083 27.7 12.0 110 85-206 394-522 (539)
290 TIGR02690 resist_ArsH arsenica 39.7 1.5E+02 0.0033 27.1 7.8 63 250-313 43-113 (219)
291 PRK06456 acetolactate synthase 39.0 2.4E+02 0.0052 29.4 10.2 111 85-206 411-540 (572)
292 COG1104 NifS Cysteine sulfinat 38.9 59 0.0013 32.4 5.3 75 243-317 94-171 (386)
293 COG2241 CobL Precorrin-6B meth 38.0 2.1E+02 0.0045 26.0 8.3 71 239-318 95-165 (210)
294 cd05125 Mth938_2P1-like Mth938 37.2 23 0.0005 28.9 1.8 38 236-273 52-90 (114)
295 PF04430 DUF498: Protein of un 37.0 24 0.00052 28.4 1.9 38 237-274 52-90 (110)
296 PRK08114 cystathionine beta-ly 35.9 70 0.0015 32.0 5.4 35 259-298 121-155 (395)
297 PRK10569 NAD(P)H-dependent FMN 35.7 1.6E+02 0.0034 26.1 7.2 63 250-313 17-89 (191)
298 cd06211 phenol_2-monooxygenase 35.6 3.3E+02 0.0072 24.5 9.6 33 238-270 109-143 (238)
299 PRK09004 FMN-binding protein M 35.2 1.6E+02 0.0035 24.8 6.9 52 243-303 5-60 (146)
300 cd03798 GT1_wlbH_like This fam 35.1 3.5E+02 0.0076 24.6 10.9 74 275-359 264-343 (377)
301 COG2089 SpsE Sialic acid synth 35.1 4E+02 0.0086 26.1 10.0 65 236-301 145-216 (347)
302 TIGR00612 ispG_gcpE 1-hydroxy- 34.9 3.7E+02 0.008 26.4 9.8 34 326-359 124-158 (346)
303 PRK10824 glutaredoxin-4; Provi 34.8 1.3E+02 0.0027 24.6 5.8 67 238-310 14-89 (115)
304 TIGR02181 GRX_bact Glutaredoxi 34.4 81 0.0018 23.0 4.4 58 248-310 7-68 (79)
305 CHL00201 syh histidine-tRNA sy 34.3 1.2E+02 0.0027 30.5 7.0 57 239-298 326-384 (430)
306 TIGR02326 transamin_PhnW 2-ami 34.1 2.1E+02 0.0046 27.4 8.5 19 280-298 148-166 (363)
307 PRK01655 spxA transcriptional 33.9 87 0.0019 26.0 4.9 42 248-290 8-49 (131)
308 PF00070 Pyr_redox: Pyridine n 33.8 56 0.0012 24.1 3.4 31 241-274 2-32 (80)
309 COG3380 Predicted NAD/FAD-depe 33.5 52 0.0011 31.4 3.7 30 240-272 3-32 (331)
310 PRK05569 flavodoxin; Provision 33.4 98 0.0021 25.5 5.2 30 246-275 12-41 (141)
311 PF00456 Transketolase_N: Tran 33.3 1.7E+02 0.0038 28.5 7.5 79 123-211 158-243 (332)
312 COG2805 PilT Tfp pilus assembl 33.3 53 0.0011 31.8 3.8 23 43-65 184-206 (353)
313 COG0543 UbiB 2-polyprenylpheno 33.0 2.1E+02 0.0045 26.5 7.8 72 228-300 96-172 (252)
314 COG4635 HemG Flavodoxin [Energ 32.9 1.1E+02 0.0024 26.8 5.3 61 247-315 12-72 (175)
315 PRK05568 flavodoxin; Provision 32.8 99 0.0021 25.4 5.1 30 247-276 13-42 (142)
316 cd03412 CbiK_N Anaerobic cobal 32.8 2.7E+02 0.0059 22.8 7.7 76 240-315 2-95 (127)
317 TIGR01753 flav_short flavodoxi 32.6 1.8E+02 0.0039 23.4 6.7 31 247-277 10-40 (140)
318 PLN02573 pyruvate decarboxylas 31.9 4E+02 0.0087 27.9 10.6 110 85-206 418-547 (578)
319 PF07905 PucR: Purine cataboli 31.7 2E+02 0.0043 23.4 6.7 65 242-307 45-116 (123)
320 PF00676 E1_dh: Dehydrogenase 31.5 2E+02 0.0044 27.4 7.6 99 99-206 107-220 (300)
321 cd05212 NAD_bind_m-THF_DH_Cycl 31.1 1E+02 0.0022 26.0 4.9 52 237-296 27-78 (140)
322 PF12328 Rpp20: Rpp20 subunit 31.0 85 0.0018 26.8 4.4 32 238-269 61-93 (144)
323 cd00248 Mth938-like Mth938-lik 31.0 28 0.00061 28.0 1.4 35 239-273 53-88 (109)
324 COG0062 Uncharacterized conser 31.0 1.1E+02 0.0024 27.6 5.4 46 241-286 53-98 (203)
325 PRK12321 cobN cobaltochelatase 30.9 4.1E+02 0.0089 30.5 10.8 67 237-306 23-91 (1100)
326 TIGR02257 cobalto_cobN cobalto 30.9 4.6E+02 0.01 30.1 11.2 60 238-298 24-86 (1122)
327 PRK10329 glutaredoxin-like pro 30.8 2.1E+02 0.0046 21.4 6.2 33 241-274 3-35 (81)
328 COG0452 Dfp Phosphopantothenoy 30.6 71 0.0015 31.9 4.5 46 238-283 4-54 (392)
329 PLN02463 lycopene beta cyclase 30.6 54 0.0012 33.3 3.7 36 239-277 29-64 (447)
330 COG3962 Acetolactate synthase 30.5 3.1E+02 0.0067 28.3 8.7 163 91-267 61-260 (617)
331 PF14258 DUF4350: Domain of un 29.8 1.5E+02 0.0032 21.3 5.1 36 255-299 9-44 (70)
332 TIGR03567 FMN_reduc_SsuE FMN r 29.7 2.4E+02 0.0052 24.2 7.2 64 249-313 15-88 (171)
333 COG1171 IlvA Threonine dehydra 29.5 4.3E+02 0.0094 26.0 9.5 112 180-316 76-199 (347)
334 PRK10537 voltage-gated potassi 29.4 1.5E+02 0.0032 29.7 6.5 56 238-296 240-309 (393)
335 COG1691 NCAIR mutase (PurE)-re 29.4 4.7E+02 0.01 24.3 9.8 72 238-312 117-193 (254)
336 PRK09754 phenylpropionate diox 29.2 77 0.0017 31.2 4.5 33 237-272 143-175 (396)
337 cd05009 SIS_GlmS_GlmD_2 SIS (S 29.1 2.5E+02 0.0054 23.0 7.0 90 235-333 10-100 (153)
338 cd01482 vWA_collagen_alphaI-XI 29.0 1.3E+02 0.0028 25.4 5.4 54 241-297 107-162 (164)
339 cd01474 vWA_ATR ATR (Anthrax T 28.9 64 0.0014 28.0 3.5 43 253-298 123-165 (185)
340 PF02441 Flavoprotein: Flavopr 28.9 55 0.0012 26.9 2.8 32 240-271 2-34 (129)
341 PRK11200 grxA glutaredoxin 1; 28.8 2.4E+02 0.0052 20.9 6.3 71 241-315 3-81 (85)
342 cd01453 vWA_transcription_fact 28.8 1.4E+02 0.003 26.1 5.6 42 253-298 125-167 (183)
343 TIGR03586 PseI pseudaminic aci 28.6 5.6E+02 0.012 24.9 11.0 70 241-313 136-213 (327)
344 TIGR01755 flav_wrbA NAD(P)H:qu 28.3 3E+02 0.0066 24.3 7.8 67 246-315 11-93 (197)
345 COG0026 PurK Phosphoribosylami 28.3 1.8E+02 0.0039 28.8 6.6 58 239-300 2-72 (375)
346 PRK00170 azoreductase; Reviewe 28.0 3E+02 0.0064 24.0 7.7 65 250-315 19-111 (201)
347 PRK08762 molybdopterin biosynt 27.9 4.6E+02 0.01 25.7 9.7 24 290-317 135-158 (376)
348 cd03029 GRX_hybridPRX5 Glutare 27.9 2.3E+02 0.0049 20.2 6.3 69 240-313 2-71 (72)
349 PRK02812 ribose-phosphate pyro 27.9 5.4E+02 0.012 25.0 10.0 119 168-300 11-149 (330)
350 PRK07282 acetolactate synthase 27.8 3.1E+02 0.0067 28.6 8.8 110 85-206 408-536 (566)
351 PRK12770 putative glutamate sy 27.7 75 0.0016 30.8 4.0 34 237-273 17-50 (352)
352 PRK00037 hisS histidyl-tRNA sy 27.5 1.8E+02 0.004 28.8 6.9 57 239-298 319-377 (412)
353 PF03033 Glyco_transf_28: Glyc 27.5 85 0.0018 25.4 3.8 34 241-274 1-36 (139)
354 cd03416 CbiX_SirB_N Sirohydroc 27.4 2.9E+02 0.0062 21.2 6.8 74 241-314 2-83 (101)
355 TIGR01292 TRX_reduct thioredox 27.4 76 0.0016 29.3 3.9 31 240-273 2-32 (300)
356 COG1010 CobJ Precorrin-3B meth 27.3 71 0.0015 29.6 3.4 52 264-316 127-183 (249)
357 cd03409 Chelatase_Class_II Cla 27.1 2.6E+02 0.0057 21.2 6.4 61 241-301 2-70 (101)
358 PRK10953 cysJ sulfite reductas 26.9 3.1E+02 0.0068 29.0 8.7 59 239-305 62-124 (600)
359 PRK09739 hypothetical protein; 26.8 1.6E+02 0.0034 26.0 5.6 65 250-315 20-104 (199)
360 PF00975 Thioesterase: Thioest 26.7 1.1E+02 0.0024 26.9 4.8 29 240-268 67-95 (229)
361 TIGR02853 spore_dpaA dipicolin 26.5 1.7E+02 0.0036 27.8 6.0 54 237-293 150-213 (287)
362 TIGR00442 hisS histidyl-tRNA s 26.4 2E+02 0.0043 28.4 6.8 57 239-298 323-381 (397)
363 COG0695 GrxC Glutaredoxin and 26.2 1.3E+02 0.0028 22.5 4.3 58 241-299 3-62 (80)
364 TIGR03249 KdgD 5-dehydro-4-deo 26.2 1.5E+02 0.0033 28.1 5.8 35 264-299 130-164 (296)
365 PLN02980 2-oxoglutarate decarb 26.1 3.1E+02 0.0066 33.0 9.2 30 178-207 856-885 (1655)
366 PF12683 DUF3798: Protein of u 26.1 3E+02 0.0066 26.1 7.4 139 47-201 76-223 (275)
367 PRK10126 tyrosine phosphatase; 26.0 75 0.0016 26.8 3.3 87 255-359 48-140 (147)
368 TIGR02032 GG-red-SF geranylger 25.9 81 0.0018 28.9 3.8 32 240-274 2-33 (295)
369 cd01475 vWA_Matrilin VWA_Matri 25.7 1.4E+02 0.003 26.9 5.2 55 241-298 112-168 (224)
370 PF07991 IlvN: Acetohydroxy ac 25.6 79 0.0017 27.7 3.3 34 237-273 3-36 (165)
371 TIGR01316 gltA glutamate synth 25.5 85 0.0018 31.7 4.1 34 237-273 132-165 (449)
372 PRK12753 transketolase; Review 25.5 6.2E+02 0.013 27.2 10.7 77 123-209 161-244 (663)
373 COG1165 MenD 2-succinyl-6-hydr 25.4 4.1E+02 0.0089 27.9 8.8 145 50-209 15-173 (566)
374 PF11823 DUF3343: Protein of u 25.0 77 0.0017 23.3 2.8 53 250-317 11-63 (73)
375 cd05560 Xcc1710_like Xcc1710_l 24.9 40 0.00088 27.2 1.3 37 237-273 51-88 (109)
376 PF13241 NAD_binding_7: Putati 24.9 97 0.0021 24.3 3.5 35 237-274 6-40 (103)
377 PF13738 Pyr_redox_3: Pyridine 24.9 87 0.0019 27.1 3.6 32 237-271 166-197 (203)
378 PRK06718 precorrin-2 dehydroge 24.8 2.3E+02 0.0049 25.3 6.3 33 237-272 9-41 (202)
379 PRK08306 dipicolinate synthase 24.7 1.8E+02 0.004 27.6 6.0 55 237-294 151-215 (296)
380 cd06064 H2MP_F420-Reduc Endope 24.6 1E+02 0.0022 26.1 3.8 32 243-274 2-40 (150)
381 PF01946 Thi4: Thi4 family; PD 24.5 1.1E+02 0.0023 28.3 4.0 31 239-272 18-48 (230)
382 PRK05802 hypothetical protein; 24.5 3.1E+02 0.0067 26.4 7.6 37 238-274 172-209 (320)
383 PLN02275 transferase, transfer 24.3 3.5E+02 0.0075 26.2 8.1 106 239-358 262-371 (371)
384 PF02254 TrkA_N: TrkA-N domain 24.2 1E+02 0.0023 24.1 3.6 53 241-296 1-69 (116)
385 PRK12754 transketolase; Review 24.0 7.3E+02 0.016 26.7 10.9 77 124-210 162-245 (663)
386 KOG0029 Amine oxidase [Seconda 24.0 91 0.002 32.3 4.0 35 237-274 14-48 (501)
387 PRK04923 ribose-phosphate pyro 24.0 6.6E+02 0.014 24.3 12.4 113 174-300 2-135 (319)
388 cd02000 TPP_E1_PDC_ADC_BCADC T 23.9 4.5E+02 0.0097 24.8 8.5 31 175-206 189-223 (293)
389 PRK12770 putative glutamate sy 23.8 1.5E+02 0.0032 28.6 5.3 35 238-275 172-207 (352)
390 cd01452 VWA_26S_proteasome_sub 23.8 2.9E+02 0.0063 24.5 6.7 59 241-299 111-175 (187)
391 cd01472 vWA_collagen von Wille 23.7 1.7E+02 0.0036 24.6 5.1 54 241-297 107-162 (164)
392 PRK12810 gltD glutamate syntha 23.6 96 0.0021 31.5 4.1 34 237-273 142-175 (471)
393 PRK13984 putative oxidoreducta 23.6 91 0.002 32.8 4.0 35 236-273 281-315 (604)
394 cd05126 Mth938 Mth938 domain. 23.5 37 0.00081 27.8 0.9 37 235-271 55-93 (117)
395 cd03415 CbiX_CbiC Archaeal sir 23.4 3.4E+02 0.0073 22.4 6.6 57 240-296 2-64 (125)
396 PF01494 FAD_binding_3: FAD bi 23.4 1E+02 0.0022 28.9 4.0 34 239-275 2-35 (356)
397 PRK12779 putative bifunctional 23.3 89 0.0019 35.0 4.0 34 237-273 305-338 (944)
398 PRK09590 celB cellobiose phosp 23.3 2.2E+02 0.0047 22.7 5.3 49 239-289 51-102 (104)
399 PRK12831 putative oxidoreducta 23.3 93 0.002 31.6 3.9 33 237-272 139-171 (464)
400 COG0821 gcpE 1-hydroxy-2-methy 23.2 5.9E+02 0.013 25.0 8.9 108 237-357 48-158 (361)
401 cd05569 PTS_IIB_fructose PTS_I 23.2 2.2E+02 0.0047 22.2 5.2 55 241-299 2-63 (96)
402 cd06067 H2MP_MemB-H2evol Endop 23.1 2.6E+02 0.0056 23.1 6.0 52 243-298 2-60 (136)
403 TIGR00232 tktlase_bact transke 23.0 7E+02 0.015 26.7 10.5 77 123-209 157-240 (653)
404 PRK06222 ferredoxin-NADP(+) re 22.9 1.2E+02 0.0026 28.5 4.3 33 238-270 98-130 (281)
405 cd03041 GST_N_2GST_N GST_N fam 22.9 2.5E+02 0.0054 20.3 5.3 61 251-315 11-75 (77)
406 cd06219 DHOD_e_trans_like1 FAD 22.8 1.5E+02 0.0032 27.1 4.9 42 229-270 88-129 (248)
407 PRK07313 phosphopantothenoylcy 22.6 1.6E+02 0.0034 26.0 4.7 33 239-271 2-35 (182)
408 TIGR03566 FMN_reduc_MsuE FMN r 22.6 3.8E+02 0.0081 23.0 7.2 64 250-314 16-92 (174)
409 PRK11104 hemG protoporphyrinog 22.6 2.7E+02 0.0059 24.2 6.3 60 247-315 12-71 (177)
410 PRK05920 aromatic acid decarbo 22.5 1.6E+02 0.0034 26.6 4.8 33 238-270 3-36 (204)
411 PRK14175 bifunctional 5,10-met 22.5 2E+02 0.0044 27.4 5.8 51 237-295 157-207 (286)
412 PRK05335 tRNA (uracil-5-)-meth 22.5 1.1E+02 0.0023 31.1 4.0 33 239-274 3-35 (436)
413 cd01521 RHOD_PspE2 Member of t 22.5 98 0.0021 24.3 3.2 34 237-270 63-96 (110)
414 PRK06719 precorrin-2 dehydroge 22.3 1.1E+02 0.0023 26.3 3.6 34 237-273 12-45 (157)
415 TIGR02329 propionate_PrpR prop 22.2 9E+02 0.019 25.2 11.8 129 46-206 15-150 (526)
416 PF01488 Shikimate_DH: Shikima 22.2 1.3E+02 0.0027 24.9 3.9 32 237-271 11-43 (135)
417 PRK08305 spoVFB dipicolinate s 22.2 1.5E+02 0.0033 26.6 4.6 36 237-272 4-41 (196)
418 PRK14194 bifunctional 5,10-met 22.2 1.5E+02 0.0033 28.5 4.8 52 237-296 158-209 (301)
419 CHL00149 odpA pyruvate dehydro 22.1 4.3E+02 0.0093 25.8 8.1 36 170-206 215-254 (341)
420 PRK11391 etp phosphotyrosine-p 22.0 64 0.0014 27.2 2.1 87 255-359 48-140 (144)
421 PHA03050 glutaredoxin; Provisi 22.0 4.1E+02 0.0089 21.1 7.0 70 238-310 12-88 (108)
422 TIGR00762 DegV EDD domain prot 22.0 5E+02 0.011 24.2 8.4 117 235-359 75-215 (275)
423 PRK08535 translation initiatio 21.7 5.6E+02 0.012 24.6 8.7 53 256-316 163-220 (310)
424 cd03816 GT1_ALG1_like This fam 21.5 4.7E+02 0.01 25.8 8.5 106 240-359 271-380 (415)
425 TIGR01752 flav_long flavodoxin 21.5 3.5E+02 0.0075 23.1 6.7 33 243-275 3-37 (167)
426 PF01266 DAO: FAD dependent ox 21.4 99 0.0021 29.0 3.5 30 240-273 1-31 (358)
427 cd06210 MMO_FAD_NAD_binding Me 21.4 3.3E+02 0.0072 24.3 6.8 27 238-264 108-134 (236)
428 cd06189 flavin_oxioreductase N 21.4 5.7E+02 0.012 22.6 10.0 111 238-351 98-220 (224)
429 TIGR01718 Uridine-psphlse urid 21.2 3.4E+02 0.0074 24.9 6.9 74 180-274 14-87 (245)
430 PRK12831 putative oxidoreducta 21.2 2.3E+02 0.005 28.7 6.3 41 236-279 279-319 (464)
431 cd03045 GST_N_Delta_Epsilon GS 21.1 1.9E+02 0.0041 20.4 4.3 24 252-275 11-34 (74)
432 cd03799 GT1_amsK_like This is 21.0 6.6E+02 0.014 23.1 11.4 75 274-359 240-326 (355)
433 COG0021 TktA Transketolase [Ca 21.0 3.3E+02 0.0071 29.1 7.2 64 148-212 179-249 (663)
434 COG0124 HisS Histidyl-tRNA syn 21.0 1.3E+02 0.0028 30.5 4.2 60 237-299 334-395 (429)
435 TIGR02113 coaC_strep phosphopa 20.9 1.7E+02 0.0036 25.7 4.5 31 240-270 2-33 (177)
436 PRK12769 putative oxidoreducta 20.8 1.1E+02 0.0023 32.7 3.9 34 237-273 326-359 (654)
437 COG1635 THI4 Ribulose 1,5-bisp 20.7 1E+02 0.0023 28.6 3.2 31 238-271 30-60 (262)
438 PRK14012 cysteine desulfurase; 20.7 4.4E+02 0.0094 25.8 8.0 24 276-299 159-182 (404)
439 cd01465 vWA_subgroup VWA subgr 20.4 3.8E+02 0.0082 22.2 6.7 46 251-298 116-162 (170)
440 PRK02948 cysteine desulfurase; 20.4 3.2E+02 0.007 26.4 7.0 22 278-299 155-176 (381)
441 PRK07200 aspartate/ornithine c 20.4 3E+02 0.0064 27.6 6.6 44 237-280 186-234 (395)
442 TIGR01465 cobM_cbiF precorrin- 20.3 90 0.0019 28.1 2.8 34 280-317 145-178 (229)
443 cd06215 FNR_iron_sulfur_bindin 20.3 2.5E+02 0.0053 25.0 5.7 27 238-264 103-129 (231)
444 KOG0572 Glutamine phosphoribos 20.3 2.2E+02 0.0048 28.4 5.5 112 238-354 291-426 (474)
445 PLN02530 histidine-tRNA ligase 20.1 2.6E+02 0.0056 28.7 6.4 57 239-298 402-460 (487)
No 1
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-78 Score=552.89 Aligned_cols=300 Identities=25% Similarity=0.388 Sum_probs=277.0
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEe
Q 018167 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (360)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~ 116 (360)
+...++|++|+++|.+++++|+++|++++|++.++ .+..|.++| ||||+|+|||||+|||+|||||++|++||++
T Consensus 4 ~~~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St---~~~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~- 78 (312)
T COG3958 4 GNTESLRKVYGETLAELGRKNSDIVVLDADLSSST---KTGYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVS- 78 (312)
T ss_pred ccchHHHHHHHHHHHHHHhcCCCEEEEeccccccc---chhHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCceee-
Confidence 34578999999999999999999999999998443 578999999 9999999999999999999999999999999
Q ss_pred cCcccHH-HHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHHHHHHHH
Q 018167 117 QFADYIF-PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (360)
Q Consensus 117 ~f~~F~~-ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l 194 (360)
+|+.|+. |+||||||++|+++ +|| ++|.+++|..+|++|++|+ .||+++||.+|||+|++|||+.+++.++
T Consensus 79 tfa~F~s~Ra~EQir~~iay~~------lnV-Kiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~ 151 (312)
T COG3958 79 TFAAFLSRRAWEQIRNSIAYNN------LNV-KIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAIL 151 (312)
T ss_pred chHHHHHHHHHHHHHHHhhhcc------CCe-EEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHH
Confidence 6999996 99999999999888 588 9999999999998887775 9999999999999999999999999999
Q ss_pred HHhHhCCCCEEEeccccccccCcccCC-CCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEec
Q 018167 195 LSCIRDPNPVVFFEPKWLYRLSVEEVP-EDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (360)
Q Consensus 195 ~~a~~~~~P~~i~~~k~l~r~~~~~v~-~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (360)
+++.+++||+|+ |+.|.+.|.+. +++|.|++||++++|+|+|+|||++|.|++.|++||+.|+++||++.|||++
T Consensus 152 ~~~~~~~GP~Y~----Rl~R~~~p~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~ 227 (312)
T COG3958 152 DQIADYKGPVYM----RLGRGKVPVVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMF 227 (312)
T ss_pred HHHHhcCCCEEE----EecCCCCCceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecC
Confidence 999999999999 77776666544 3459999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCc------cccccccCCCCH
Q 018167 274 TLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPF------PLVFEPFYMPTK 347 (360)
Q Consensus 274 ~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~------~~~~e~~gl~~~ 347 (360)
||||+|++++.+.++++++|||+|||+..||||++|++.+++++ +.|++|+|.+ +.| .+++++||| |+
T Consensus 228 tIKPiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp-~~fg~sg~~~~Ll~~ygl-~~ 301 (312)
T COG3958 228 TIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVP-DTFGRSGKADELLDYYGL-DP 301 (312)
T ss_pred ccCCCCHHHHHHHHhhcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEecCC-chhccccchHHHHHHhCC-CH
Confidence 99999999999999999999999999999999999999999986 6889999554 444 367999999 99
Q ss_pred HHHHHHHHHhh
Q 018167 348 NKILDAIKSTV 358 (360)
Q Consensus 348 ~~I~~~i~~~l 358 (360)
++|++++++++
T Consensus 302 ~~I~~~v~~~~ 312 (312)
T COG3958 302 ESIAARVLELL 312 (312)
T ss_pred HHHHHHHHhhC
Confidence 99999999874
No 2
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=4.2e-78 Score=555.58 Aligned_cols=320 Identities=55% Similarity=0.917 Sum_probs=310.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCC-CCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecC
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~-~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f 118 (360)
++|++|++++|.+.|++|++|+++++|++ +||+|+.|.+|.++||++|++|++|+|.+++|+|.|+|+.|+||++++||
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf 81 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF 81 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence 68999999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCI 198 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~ 198 (360)
.+|++.|+|||.|++|+.+||+++++++ |+|++.|.|..-.++.+|||+-.+++.++||++|++|++|.|++++|++|+
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~-PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAI 160 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTV-PIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAI 160 (324)
T ss_pred cchhHHHHHHHHHHHHHHhhhcCCceeC-CEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHHh
Confidence 9999999999999999999999999999 999999988877899999999999999999999999999999999999999
Q ss_pred hCCCCEEEeccccccccCcccCCCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCC
Q 018167 199 RDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278 (360)
Q Consensus 199 ~~~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~ 278 (360)
++++||++++||++||....++|+++|.+|+||+.++|+|+|+|||+||.|++.+++||++|+++||+++|||+|||+|+
T Consensus 161 rd~dPViflE~k~lY~~~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~Pl 240 (324)
T COG0022 161 RDPDPVIFLEHKRLYRSFKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSPL 240 (324)
T ss_pred cCCCCEEEEecHHHhcccccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccccCcc
Confidence 99999999999999997667889999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCcc--ccccccCCCCHHHHHHHHHH
Q 018167 279 DKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP--LVFEPFYMPTKNKILDAIKS 356 (360)
Q Consensus 279 d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~--~~~e~~gl~~~~~I~~~i~~ 356 (360)
|.++|.+|++||+|+++|||.+.++|+|++|++.+.|+.|..|++|+.|+++.|.|.| ..+|++.+|++++|.+++++
T Consensus 241 D~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~~lE~~~lp~~~~I~~av~~ 320 (324)
T COG0022 241 DKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSAALEKAYLPNPERIVAAVKK 320 (324)
T ss_pred CHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcchhHHhhhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999854 45999999999999999999
Q ss_pred hhhC
Q 018167 357 TVNY 360 (360)
Q Consensus 357 ~l~~ 360 (360)
+++|
T Consensus 321 v~~~ 324 (324)
T COG0022 321 VLEF 324 (324)
T ss_pred HhhC
Confidence 9875
No 3
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=1.6e-74 Score=556.28 Aligned_cols=318 Identities=40% Similarity=0.664 Sum_probs=289.7
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEcCCCCC-CCccccchhHHHHhCCC-cEEechhHHHHHHHHHHHHhcCCCeeEEE
Q 018167 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKS-RVFNTPLCEQGIVGFAIGLAAMGNRAIAE 115 (360)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~-g~~~~~~~~~~~~~gp~-r~i~~GIaE~~~vg~AaGlA~~G~~p~~~ 115 (360)
.+++||++|+++|.+++++||+++++++|++. +++|+.+++|+++| |+ ||||+|||||+|||+|+|||++|++||++
T Consensus 2 ~~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~f-p~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~ 80 (327)
T CHL00144 2 SEVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKY-GDLRVLDTPIAENSFTGMAIGAAMTGLRPIVE 80 (327)
T ss_pred CcchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHC-CCccEeeccccHHHHHHHHHHHHHCCCEEEEE
Confidence 34799999999999999999999999999974 44477789999999 78 99999999999999999999999999999
Q ss_pred ecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 018167 116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (360)
Q Consensus 116 ~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~ 195 (360)
++|++|++||||||+|++|+++|++++++++ +++++++++..+.+|+|||+.-+++||+||||+|++|+|+.|++.+++
T Consensus 81 ~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~-~vv~~~~g~~~~~~G~tHs~~~ea~~~~iPgl~V~~Psd~~d~~~~l~ 159 (327)
T CHL00144 81 GMNMGFLLLAFNQISNNAGMLHYTSGGNFTI-PIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLK 159 (327)
T ss_pred eehhhHHHHHHHHHHHHHHHHhhccCCCccC-CEEEEecCCCCCCCCccccccHHHHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 7677888999999999999999999999999 999998777666678888655569999999999999999999999999
Q ss_pred HhHhCCCCEEEeccccccccCcccCCCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccc
Q 018167 196 SCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (360)
Q Consensus 196 ~a~~~~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~i 275 (360)
++++.++|+|||+||+++|.. +.++++++.+++||++++|+|+|++||+||.|+++|++|++.|+++||+++|||++||
T Consensus 160 ~a~~~~~Pv~ire~~~l~~~~-~~v~~~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~i 238 (327)
T CHL00144 160 SAIRSNNPVIFFEHVLLYNLK-EEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISL 238 (327)
T ss_pred HHHhCCCcEEEEEcHHhcCCC-CCCCCCCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcC
Confidence 999999999999999999854 5677677889999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCcc---ccccccCCCCHHHHHH
Q 018167 276 IPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP---LVFEPFYMPTKNKILD 352 (360)
Q Consensus 276 kP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~---~~~e~~gl~~~~~I~~ 352 (360)
||||+++|.++++++++|||+|||+..||+|++|++.+.+++|..++.|+.+++..|.+.+ .+.+.+|+ |+++|++
T Consensus 239 kPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~~~~gl-~~~~I~~ 317 (327)
T CHL00144 239 KPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLEEATVI-QPAQIIE 317 (327)
T ss_pred CCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHHHHhCC-CHHHHHH
Confidence 9999999999999999999999999999999999999999876556789999987777555 33444676 9999999
Q ss_pred HHHHhhh
Q 018167 353 AIKSTVN 359 (360)
Q Consensus 353 ~i~~~l~ 359 (360)
+++++++
T Consensus 318 ~i~~~l~ 324 (327)
T CHL00144 318 AVEQIIT 324 (327)
T ss_pred HHHHHHh
Confidence 9999875
No 4
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=2.9e-74 Score=559.67 Aligned_cols=325 Identities=38% Similarity=0.658 Sum_probs=293.0
Q ss_pred CCCCCcccHHHHHHHHHHHHHhcCCCEEEEcCCCC-CCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCee
Q 018167 34 VGSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRA 112 (360)
Q Consensus 34 ~~~~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~-~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p 112 (360)
...-++++||++|+++|.+++++||+++++++|++ ++++|+.+++|.++|||+||||+|||||||+|+|+|||++|++|
T Consensus 21 ~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P 100 (356)
T PLN02683 21 ASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKP 100 (356)
T ss_pred CccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEE
Confidence 33445689999999999999999999999999998 55667778899999989999999999999999999999999999
Q ss_pred EEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHH
Q 018167 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKG 192 (360)
Q Consensus 113 ~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~ 192 (360)
|++++|++|++||||||+|++|+++|++++++++ +++++++.|...++|+||++.++++||+||||+|++|+|+.|++.
T Consensus 101 ~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~-pV~i~~~~G~~~g~G~tH~~~~~a~lr~iPnl~V~~Pad~~e~~~ 179 (356)
T PLN02683 101 VVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISV-PIVFRGPNGAAAGVGAQHSQCFAAWYSSVPGLKVLAPYSSEDARG 179 (356)
T ss_pred EEEEehhhHHHHHHHHHHHHHHHhccccCCCccC-CEEEEEeCCCCCCCCCccccCHHHHHhcCCCCEEEEeCCHHHHHH
Confidence 9997678889999999999999999999999888 888887766554568888876789999999999999999999999
Q ss_pred HHHHhHhCCCCEEEeccccccccCcccC---CCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeE
Q 018167 193 LLLSCIRDPNPVVFFEPKWLYRLSVEEV---PEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCEL 269 (360)
Q Consensus 193 ~l~~a~~~~~P~~i~~~k~l~r~~~~~v---~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~V 269 (360)
++++++++++|+|||+++.+++...+.. +++++.+++|+++++|+|+|++|||+|+++..|++|++.|+++||+++|
T Consensus 180 ~l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~V 259 (356)
T PLN02683 180 LLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEV 259 (356)
T ss_pred HHHHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999888877543321 1224678899999999999999999999999999999999999999999
Q ss_pred EEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCccc--cccccCCCCH
Q 018167 270 IDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPL--VFEPFYMPTK 347 (360)
Q Consensus 270 i~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~~--~~e~~gl~~~ 347 (360)
||++||||||+++|.++++++++|||+|||+..||||++|++.+.+++|..++.|+.|++..|.|.|. .+|++++|++
T Consensus 260 Id~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~le~~~~p~~ 339 (356)
T PLN02683 260 INLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAANLERLALPQV 339 (356)
T ss_pred EECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHHHHHhhCCCH
Confidence 99999999999999999999999999999999999999999999998776567899999888877664 5999999999
Q ss_pred HHHHHHHHHhhh
Q 018167 348 NKILDAIKSTVN 359 (360)
Q Consensus 348 ~~I~~~i~~~l~ 359 (360)
++|+++++++++
T Consensus 340 ~~i~~a~~~~~~ 351 (356)
T PLN02683 340 EDIVRAAKRACY 351 (356)
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 5
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=5.9e-74 Score=557.27 Aligned_cols=321 Identities=61% Similarity=1.073 Sum_probs=297.9
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEcCCCC-CCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEE
Q 018167 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAE 115 (360)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~-~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~ 115 (360)
+.+++||++|+++|.+++++||+++++++|++ +|++++.+++|+++|||+||||+|||||+|+|+|+|||++|++||++
T Consensus 32 ~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~ 111 (355)
T PTZ00182 32 TVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAE 111 (355)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 55689999999999999999999999999997 55667778999999999999999999999999999999999999999
Q ss_pred ecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 018167 116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (360)
Q Consensus 116 ~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~ 195 (360)
++|++|++||||||+|++|+++|++++++++ +++++++++.++.+|+||++.++++||+||||+|++|+|+.|++.+++
T Consensus 112 ~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v-~vv~~~~~g~~g~~G~tHs~~~ea~lr~iPn~~V~~Psd~~e~~~~l~ 190 (355)
T PTZ00182 112 FMFADFIFPAFDQIVNEAAKYRYMSGGQFDC-PIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLLK 190 (355)
T ss_pred echhhHHHHHHHHHHHHHHHhhcccCCCccC-CEEEEeCCCCCCCCCCcccchHHHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 7799999999999999999999999999999 999999999999999999777779999999999999999999999999
Q ss_pred HhHhCCCCEEEeccccccccCcccCCCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccc
Q 018167 196 SCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (360)
Q Consensus 196 ~a~~~~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~i 275 (360)
+++++++|+||++||+++|...+.++++++.+++||++++++|+|++||+||+++..|++|++.|+++|++++|||++++
T Consensus 191 ~a~~~~~P~~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l 270 (355)
T PTZ00182 191 AAIRDPNPVVFFEPKLLYRESVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSL 270 (355)
T ss_pred HHHhCCCcEEEEeehHHhCCCCCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeC
Confidence 99999999999999999987665555556788999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCcccc--ccccCCCCHHHHHHH
Q 018167 276 IPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLV--FEPFYMPTKNKILDA 353 (360)
Q Consensus 276 kP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~~~--~e~~gl~~~~~I~~~ 353 (360)
+|||++.|.+.++++++|||+|||+..||||++|++++.+++|..|+.|+.|++..|.+.|+. ++++.+|++++|+++
T Consensus 271 ~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~le~~~~~~~~~i~~~ 350 (355)
T PTZ00182 271 RPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKNLEPAYLPDKEKVVEA 350 (355)
T ss_pred CCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999987766788999998777766543 677777899999999
Q ss_pred HHHhh
Q 018167 354 IKSTV 358 (360)
Q Consensus 354 i~~~l 358 (360)
+++++
T Consensus 351 ~~~~~ 355 (355)
T PTZ00182 351 AKRVL 355 (355)
T ss_pred HHHhC
Confidence 99874
No 6
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=1.4e-73 Score=550.50 Aligned_cols=320 Identities=43% Similarity=0.722 Sum_probs=293.1
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEcCCCC-CCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEe
Q 018167 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (360)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~-~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~ 116 (360)
.+++||++|+++|.+++++||+++++++|++ .+++|+.+++|+++|||+||||+|||||||+|+|+|||++|+|||+++
T Consensus 2 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~ 81 (327)
T PRK09212 2 AQLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEF 81 (327)
T ss_pred CcchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEe
Confidence 4679999999999999999999999999998 456677789999999999999999999999999999999999999997
Q ss_pred cCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 018167 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (360)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~ 196 (360)
++++|++||||||+|++|+++|++++++++ ++++++++|.++.+|+|||+..+++||+||||+|++|+|+.|++.++++
T Consensus 82 ~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v-~vv~~~~~g~~~~~G~tH~~~~ea~~r~iP~l~V~~P~d~~e~~~~l~~ 160 (327)
T PRK09212 82 MTFNFSMQAIDQIVNSAAKTNYMSGGQLKC-PIVFRGPNGAAARVAAQHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKT 160 (327)
T ss_pred ehhhHHHHHHHHHHHHHHHHhhccCCCcCc-cEEEEeCCCCCCCCCcccccCHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 444788999999999999999999999999 9999999988888899996555699999999999999999999999999
Q ss_pred hHhCCCCEEEeccccccccCcccCCCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecccc
Q 018167 197 CIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (360)
Q Consensus 197 a~~~~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ik 276 (360)
++++++|+|||+|+..++. .+.++++++.+++||++++++|+|++||+||+++..|++|++.|+++|++++|||+++|+
T Consensus 161 a~~~~~Pv~i~~~~~~~~~-~~~~~~~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~ 239 (327)
T PRK09212 161 AIRDPNPVIFLENEILYGH-SHEVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLR 239 (327)
T ss_pred HHhCCCcEEEEEchhhcCC-CCCCCCCCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 9999999999998876652 345565567899999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCcc--ccccccCCCCHHHHHHHH
Q 018167 277 PWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP--LVFEPFYMPTKNKILDAI 354 (360)
Q Consensus 277 P~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~--~~~e~~gl~~~~~I~~~i 354 (360)
|||+++|.++++++++|||||||+..||+|+++++++.++++..++.++.++++.+.+.+ .++++++||++++|++++
T Consensus 240 Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~~~le~~~l~~~~~I~~~i 319 (327)
T PRK09212 240 PLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYAANLEKLALPSEEDIIEAV 319 (327)
T ss_pred CCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCchHHHHHhcCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999765445679999988887654 579999999999999999
Q ss_pred HHhhh
Q 018167 355 KSTVN 359 (360)
Q Consensus 355 ~~~l~ 359 (360)
+++++
T Consensus 320 ~~~~~ 324 (327)
T PRK09212 320 KKVCY 324 (327)
T ss_pred HHHHh
Confidence 99874
No 7
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=5.9e-73 Score=565.22 Aligned_cols=320 Identities=40% Similarity=0.697 Sum_probs=293.3
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEcCCCC-CCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEE
Q 018167 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAE 115 (360)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~-~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~ 115 (360)
+.++++|++|+++|.+++++|++|+++++|++ +++.|+.+.+|.++|||+||||+||+||+|+|+|+|||++|+|||++
T Consensus 139 ~~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~ 218 (464)
T PRK11892 139 MVTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVE 218 (464)
T ss_pred ccchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 44568999999999999999999999999998 55667778999999999999999999999999999999999999999
Q ss_pred ecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 018167 116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (360)
Q Consensus 116 ~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~ 195 (360)
+++++|++||||||+|++|+..|++++..++ +++++++.|.....|+||+++|+++||+||||+|++|+|+.|++.+++
T Consensus 219 ~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~-pVv~~g~~G~~~~~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~ 297 (464)
T PRK11892 219 FMTFNFAMQAIDQIINSAAKTLYMSGGQMGC-PIVFRGPNGAAARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLK 297 (464)
T ss_pred EehHHHHHHHHHHHHHHHhHHhhhcCCccCC-CEEEEecCCCCCCCCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHHH
Confidence 7667888999999999999999999999999 999998877766678899999999999999999999999999999999
Q ss_pred HhHhCCCCEEEeccccccccCcccCCC-CCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc
Q 018167 196 SCIRDPNPVVFFEPKWLYRLSVEEVPE-DDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 196 ~a~~~~~P~~i~~~k~l~r~~~~~v~~-~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
+++++++|+||++++.+|.... .+|. +++.+++||++++|+|+|+|||++|.++..|++|++.|+++||+++|||++|
T Consensus 298 ~ai~~~~Pv~ile~~~ry~~~~-~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~t 376 (464)
T PRK11892 298 AAIRDPNPVIFLENEILYGQSF-DVPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRT 376 (464)
T ss_pred HHhhCCCcEEEEechhhcCCCC-CCCCcCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 9999999999999886665431 1222 4578899999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCcc--ccccccCCCCHHHHHH
Q 018167 275 LIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP--LVFEPFYMPTKNKILD 352 (360)
Q Consensus 275 ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~--~~~e~~gl~~~~~I~~ 352 (360)
|||||+++|.++++++++|||+|||+..||||++|++++.+++|+.++.|+.|++..|.+.+ .++|+++|||+++|++
T Consensus 377 lkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~~~~~le~~~l~~~~~Iv~ 456 (464)
T PRK11892 377 IRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMPYAANLEKLALPSVAEVVE 456 (464)
T ss_pred CCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCCcHHHHHHhcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999988777889999988776544 5799999999999999
Q ss_pred HHHHhh
Q 018167 353 AIKSTV 358 (360)
Q Consensus 353 ~i~~~l 358 (360)
++++++
T Consensus 457 av~~~~ 462 (464)
T PRK11892 457 AVKAVC 462 (464)
T ss_pred HHHHHh
Confidence 999875
No 8
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=2.1e-67 Score=540.56 Aligned_cols=304 Identities=21% Similarity=0.270 Sum_probs=267.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecC
Q 018167 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (360)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f 118 (360)
..+|+++|+++|.+++++|++|+++++||..|+ .+..|+++| |+||||+||||||||++|+|||++|++||+++ |
T Consensus 380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gt---gl~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~~G~kPvv~i-y 454 (701)
T PLN02225 380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDA---SLITFQERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCII-P 454 (701)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcc---cHHHHHHHc-cccccccCccHHHHHHHHHHHHHCCCEEEEEe-e
Confidence 458999999999999999999999999998543 479999999 99999999999999999999999999999995 9
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCC-CchHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~H-s~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a 197 (360)
++|++||||||+||+|++++ || ++++.. +|.++.+|+|| +.+|+++||+||||+|++|+|+.|++.++++|
T Consensus 455 stFlqRAyDQI~~Dval~~l------pV-~~vid~-aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A 526 (701)
T PLN02225 455 SAFLQRAYDQVVHDVDRQRK------AV-RFVITS-AGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATA 526 (701)
T ss_pred hhHHHHHHHHHHHHHHhhcC------Cc-eEEEEC-CccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999999984 67 777654 56677788766 59999999999999999999999999999998
Q ss_pred Hh-CCCCEEEeccccccccCcccCCCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecccc
Q 018167 198 IR-DPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (360)
Q Consensus 198 ~~-~~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ik 276 (360)
+. .++|+|||+||.........+ ++++.+++||++++++|+|++|||+|.+++.|++|++.|+++||+++|||++|||
T Consensus 527 ~~~~~gPv~IR~pRg~~~~~~~~~-~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ik 605 (701)
T PLN02225 527 AYVTDRPVCFRFPRGSIVNMNYLV-PTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCK 605 (701)
T ss_pred HhcCCCCEEEEecccccCCCCcCC-CCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 85 579999999986432210011 2346789999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCc-----cccccccCCCCHHHHH
Q 018167 277 PWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPF-----PLVFEPFYMPTKNKIL 351 (360)
Q Consensus 277 P~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~-----~~~~e~~gl~~~~~I~ 351 (360)
|||+++|.++++++++|||||||+. ||+|++|++++.+.+....+.++++++.+|.+. .++++++|| |+++|+
T Consensus 606 PLD~e~I~~~~~k~~~vVTvEE~~~-GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G~~~~ll~~~GL-dae~I~ 683 (701)
T PLN02225 606 PLDIKLVRDLCQNHKFLITVEEGCV-GGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLALAGL-TGHHIA 683 (701)
T ss_pred CCCHHHHHHHHhhcCeEEEEcCCCC-CchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCCCHHHHHHHhCc-CHHHHH
Confidence 9999999999999999999999986 999999999999875211135788996656433 367999999 999999
Q ss_pred HHHHHhh
Q 018167 352 DAIKSTV 358 (360)
Q Consensus 352 ~~i~~~l 358 (360)
++|++++
T Consensus 684 ~~i~~~l 690 (701)
T PLN02225 684 ATALSLL 690 (701)
T ss_pred HHHHHHH
Confidence 9999887
No 9
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=3.1e-65 Score=506.23 Aligned_cols=304 Identities=19% Similarity=0.296 Sum_probs=274.4
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEe
Q 018167 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (360)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~ 116 (360)
....+|.++|+++|.+++++|+++|.+|+.|..|+ ++.+|+++| |+||||+|||||++|++|+|||.+|+|||+++
T Consensus 313 ~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gt---GL~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaI 388 (627)
T COG1154 313 PSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGT---GLVKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAI 388 (627)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCC---ChHHHHHhC-chhheehhhhHHHHHHHHHHHHhCCCCCEEEE
Confidence 34578999999999999999999999999999665 579999999 99999999999999999999999999999997
Q ss_pred cCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 018167 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (360)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~ 195 (360)
|++|+||||||+.||+|++|+ || ++..+++|.+|.||+||+ ..|+++||+||||+|++|+|.+|++.+++
T Consensus 389 -YSTFLQRAYDQliHDvaiqnL------PV--~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ 459 (627)
T COG1154 389 -YSTFLQRAYDQLIHDVAIQNL------PV--TFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLY 459 (627)
T ss_pred -ecHHHHHHHHHHHHHHHhccC------Ce--EEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHH
Confidence 999999999999999999994 55 455789999999999886 99999999999999999999999999999
Q ss_pred HhHhCC-CCEEEeccccccccCcccCCCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc
Q 018167 196 SCIRDP-NPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 196 ~a~~~~-~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
+++.++ +|+.||+||.-.-... .......+++|||+++++|.|++||++|.++..|++|++.|.+.||+++|||+++
T Consensus 460 ta~~~~~gP~AiRyPrg~~~~~~--~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rf 537 (627)
T COG1154 460 TALAQDDGPVAIRYPRGNGVGVI--LTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRF 537 (627)
T ss_pred HHHhcCCCCeEEEecCCCCCCCC--cccccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCee
Confidence 999985 8999999986321111 1111356889999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCc-----cccccccCCCCHHH
Q 018167 275 LIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPF-----PLVFEPFYMPTKNK 349 (360)
Q Consensus 275 ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~-----~~~~e~~gl~~~~~ 349 (360)
+||+|++.|.+.+++++.+||+||+...||+||.|++++.+.++ ..|+++++.+|..+ .++++.+|| |++.
T Consensus 538 vkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~lglpd~fi~hg~~~el~~~~gL-d~~~ 613 (627)
T COG1154 538 VKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNLGLPDEFIDHGSPEELLAELGL-DAEG 613 (627)
T ss_pred cCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCC---CCceEEecCChHhhccCCHHHHHHHcCC-CHHH
Confidence 99999999999999999999999999999999999999999764 57899996666544 367999999 9999
Q ss_pred HHHHHHHhhh
Q 018167 350 ILDAIKSTVN 359 (360)
Q Consensus 350 I~~~i~~~l~ 359 (360)
|.++|.++++
T Consensus 614 i~~~i~~~l~ 623 (627)
T COG1154 614 IARRILEWLK 623 (627)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 10
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1e-64 Score=456.34 Aligned_cols=325 Identities=42% Similarity=0.696 Sum_probs=305.5
Q ss_pred CCCCCCcccHHHHHHHHHHHHHhcCCCEEEEcCCCC-CCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCe
Q 018167 33 GVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNR 111 (360)
Q Consensus 33 ~~~~~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~-~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~ 111 (360)
+.+.+..++.|+|+++++.+.++.|++|++++++++ ++|+++.+++|.++||+.|++|++|+|.+..|+|.|.|+.|+|
T Consensus 28 s~r~~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLr 107 (359)
T KOG0524|consen 28 SARAAKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLR 107 (359)
T ss_pred ccccceeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcc
Confidence 333467899999999999999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred eEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHH
Q 018167 112 AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAK 191 (360)
Q Consensus 112 p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~ 191 (360)
|+++.+-..|++.|+|||.|++++..||++++.++ |+|+++|.|...+-+..|||.-.+|+.++||++|++|.+++|++
T Consensus 108 Pi~efMtfnFsmqAid~IiNsaakt~YmSgG~~~~-piVfRGPnG~~~gv~AqHSQ~f~~wy~siPGlkvvapysaedak 186 (359)
T KOG0524|consen 108 PICEFMTFNFSMQAIDQIINSAAKTHYMSGGQQPV-PIVFRGPNGAAAGVAAQHSQDFASWYGSIPGLKVVAPYSAEDAK 186 (359)
T ss_pred hhhhhhcchhHHHHHHHHHHHHHHHhcccCCceec-cEEEeCCCCcccchhhhhhhhhHHHhccCCCceEeccCChhhhh
Confidence 99996556678999999999999999999999999 99999999988888899999999999999999999999999999
Q ss_pred HHHHHhHhCCCCEEEeccccccccCcccCCC----CCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCe
Q 018167 192 GLLLSCIRDPNPVVFFEPKWLYRLSVEEVPE----DDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISC 267 (360)
Q Consensus 192 ~~l~~a~~~~~P~~i~~~k~l~r~~~~~v~~----~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v 267 (360)
+++++|+++++||+++++.-||..+.+ +++ +++..++||+.+.|+|+|+||+++..++..+++||+.|.++|+++
T Consensus 187 GLlKaAIRd~NPVV~lEnelLYg~~f~-i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~ 265 (359)
T KOG0524|consen 187 GLLKAAIRDENPVVFLENELLYGLSFE-IPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSA 265 (359)
T ss_pred hHHHHhccCCCCeEEEechhhcCCCcc-CChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999988876654 333 358889999999999999999999999999999999999999999
Q ss_pred eEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCcccc--ccccCCC
Q 018167 268 ELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLV--FEPFYMP 345 (360)
Q Consensus 268 ~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~~~--~e~~gl~ 345 (360)
+|||+|||+|||.++|..+++||.++++||+++..+|+|++|++.++|..|+.|++|+.|+.+.|.|.|+. +|+.-+|
T Consensus 266 EVInlrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PYa~~lE~~a~p 345 (359)
T KOG0524|consen 266 EVINLRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPYAKTLEDWAVP 345 (359)
T ss_pred eeEeeeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCccchhhHhhcCC
Confidence 99999999999999999999999999999999999999999999999988999999999999999877765 9999999
Q ss_pred CHHHHHHHHHHhhh
Q 018167 346 TKNKILDAIKSTVN 359 (360)
Q Consensus 346 ~~~~I~~~i~~~l~ 359 (360)
++++|+.++++++.
T Consensus 346 ~~~~iV~Avk~~~~ 359 (359)
T KOG0524|consen 346 QPADIVTAVKKLCN 359 (359)
T ss_pred CHHHHHHHHHHhhC
Confidence 99999999999863
No 11
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=5.2e-64 Score=519.50 Aligned_cols=301 Identities=19% Similarity=0.324 Sum_probs=266.8
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecC
Q 018167 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (360)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f 118 (360)
..+|+++|+++|.+++++|++|+++++|+..++ .+++|+++| |+||||+|||||+|||+|+|||+.|++||+++ |
T Consensus 309 ~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~---~~~~f~~~f-P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~-~ 383 (617)
T TIGR00204 309 LPSYSKIFSDTLCELAKKDNKIVGITPAMPEGS---GLDKFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAI-Y 383 (617)
T ss_pred CccHHHHHHHHHHHHHhhCcCEEEEECCccCCc---ChHHHHHHC-ccccccCCccHHHHHHHHHHHHHCCCEEEEEe-c
Confidence 468999999999999999999999999996333 379999999 99999999999999999999999999999996 9
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a 197 (360)
++|++||||||++++|+++ +|| .+++.+ +|..+.+|+||+ .+|+++||++|||+|++|+|+.|++.++++|
T Consensus 384 a~Fl~ra~dQi~~~~a~~~------lpV-~i~~~~-~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a 455 (617)
T TIGR00204 384 STFLQRAYDQVVHDVCIQK------LPV-LFAIDR-AGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTG 455 (617)
T ss_pred HHHHHHHHHHHHHHHHhcC------CCE-EEEEEC-CCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHH
Confidence 9999999999999999877 455 444333 445677777775 9999999999999999999999999999999
Q ss_pred HhCC-CCEEEeccccccccCcccCCCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecccc
Q 018167 198 IRDP-NPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (360)
Q Consensus 198 ~~~~-~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ik 276 (360)
++.+ +|+|||+||..+.. . ..+++++.+++|+++++++|+|++||++|.+++.|++|+++|+++||+++|||++|||
T Consensus 456 ~~~~~~Pv~ir~~r~~~~~-~-~~~~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lk 533 (617)
T TIGR00204 456 YHYDDGPIAVRYPRGNAVG-V-ELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVK 533 (617)
T ss_pred HhCCCCCEEEEEccCCcCC-c-ccCCccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCC
Confidence 9865 99999988864421 1 1122346789999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCc-----cccccccCCCCHHHHH
Q 018167 277 PWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPF-----PLVFEPFYMPTKNKIL 351 (360)
Q Consensus 277 P~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~-----~~~~e~~gl~~~~~I~ 351 (360)
|||+++|.+++++++++||||||+..||||++|++++.+++ ++.|+.+++.++.+. .++++++|| |+++|+
T Consensus 534 PlD~e~i~~~~~k~~~vvtvEE~~~~GGlGs~v~~~l~~~~---~~~~v~~ig~~d~~~~~g~~~~L~~~~Gl-~~~~I~ 609 (617)
T TIGR00204 534 PLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQN---KLVPVKRLGIPDFFIPHGTQEEVLAELGL-DTAGME 609 (617)
T ss_pred cCCHHHHHHHHhhcCeEEEEECCCCccChHHHHHHHHHhcC---CCCCeEEEeCCCcCcCCCCHHHHHHHHCc-CHHHHH
Confidence 99999999999999999999999999999999999999874 467999997766544 367999999 999999
Q ss_pred HHHHHhh
Q 018167 352 DAIKSTV 358 (360)
Q Consensus 352 ~~i~~~l 358 (360)
++|++++
T Consensus 610 ~~i~~~~ 616 (617)
T TIGR00204 610 AKILAWL 616 (617)
T ss_pred HHHHHhh
Confidence 9999876
No 12
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.4e-64 Score=449.63 Aligned_cols=323 Identities=83% Similarity=1.377 Sum_probs=313.8
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEec
Q 018167 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (360)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~ 117 (360)
++++.-++++++|.-.+++||+-++.++|++.||+|..+.+++++||.||+||++++||.++|+..|+|..|.+.+++|+
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiq 118 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQ 118 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEEe
Confidence 66888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 018167 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (360)
Q Consensus 118 f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a 197 (360)
|++++..|||||.|.+++.+|+++++++++++.++.+.|.+|+|+-+|||+.++++.+.||++|+.|..|.|+++++..+
T Consensus 119 fadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff~h~pgikvviprsp~qakglllsc 198 (362)
T KOG0525|consen 119 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLLSC 198 (362)
T ss_pred eccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCCchhheecCCCceEEecCCcchhhceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCEEEeccccccccCcccCCCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHH-hcCCCeeEEEecccc
Q 018167 198 IRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAE-KEGISCELIDLKTLI 276 (360)
Q Consensus 198 ~~~~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~-~~Gi~v~Vi~~~~ik 276 (360)
+++++|+++++||.|||+..+++|.++|.+|+++++++|+|+|+|+++||..++.++|++-.-+ +.|++++|||+.+|-
T Consensus 199 irdpnp~iffepk~lyr~a~edvp~~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidlkti~ 278 (362)
T KOG0525|consen 199 IRDPNPCIFFEPKILYRQAVEDVPEGDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDLKTII 278 (362)
T ss_pred ccCCCceEEechHHHHHHhhhhCCCCCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEeeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999887543 459999999999999
Q ss_pred CCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCccccccccCCCCHHHHHHHHHH
Q 018167 277 PWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKS 356 (360)
Q Consensus 277 P~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~~~~e~~gl~~~~~I~~~i~~ 356 (360)
|+|.+.+.++++||+++++-.|...+||+|++|+..+.+++|..|..|+.|++|.|.|+|...|-+++||..+|.++|++
T Consensus 279 pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~vfepfy~ptk~ki~daik~ 358 (362)
T KOG0525|consen 279 PWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPHVFEPFYMPTKNKILDAIKK 358 (362)
T ss_pred CccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcccccccccCcHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred hhhC
Q 018167 357 TVNY 360 (360)
Q Consensus 357 ~l~~ 360 (360)
.++|
T Consensus 359 ~vny 362 (362)
T KOG0525|consen 359 TVNY 362 (362)
T ss_pred hccC
Confidence 9987
No 13
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=9e-63 Score=509.72 Aligned_cols=303 Identities=19% Similarity=0.312 Sum_probs=260.8
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecC
Q 018167 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (360)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f 118 (360)
..+|.++|+++|.+++++||+||++++|++ ++++ +..|+++| |+||||+|||||+||++|+|||+.|++||+++ |
T Consensus 355 ~~~~s~a~~~aL~~~a~~d~~vv~ita~m~--g~~g-l~~f~~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~-f 429 (677)
T PLN02582 355 TQSYTTYFAEALIAEAEVDKDVVAIHAAMG--GGTG-LNLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-Y 429 (677)
T ss_pred CcCHHHHHHHHHHHHHccCCCEEEEeCCCC--Cccc-hHHHHHHc-CccccccCcCHHHHHHHHHHHHHCCCeEEEEe-c
Confidence 358999999999999999999999999987 3343 57999999 99999999999999999999999999999995 9
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a 197 (360)
++|++||||||++++|+++ +|| .+++.+ +|.++.+|+||+ .+|+++||+||||+|++|+|+.|++.++++|
T Consensus 430 s~Fl~RA~DQI~~dval~~------lpV-v~v~~~-aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a 501 (677)
T PLN02582 430 SSFLQRGYDQVVHDVDLQK------LPV-RFAMDR-AGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATA 501 (677)
T ss_pred HHHHHHHHHHHHHHHHhcC------CCE-EEEEEC-CCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999999999887 455 444333 455777787775 9999999999999999999999999999999
Q ss_pred HhC-CCCEEEeccccccccCcccCCCC--CcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc
Q 018167 198 IRD-PNPVVFFEPKWLYRLSVEEVPED--DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 198 ~~~-~~P~~i~~~k~l~r~~~~~v~~~--~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
++. ++|+|||+||.... . ..++++ ++.+++||++++++|+|++|||+|++++.|++|++.|+++||+++|||++|
T Consensus 502 l~~~~gPv~IR~pr~~~~-~-~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~ 579 (677)
T PLN02582 502 AAIDDRPSCFRYPRGNGI-G-VQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVADARF 579 (677)
T ss_pred HhCCCCCEEEEEecCCCC-C-cccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 975 69999999886311 1 112221 356889999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCc-----cccccccCCCCHHH
Q 018167 275 LIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPF-----PLVFEPFYMPTKNK 349 (360)
Q Consensus 275 ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~-----~~~~e~~gl~~~~~ 349 (360)
|||||++.|.+.+++++.+||+|||.. ||||++|++++.+.+......++.+++.+|... .++++++|| |+++
T Consensus 580 lkPlD~~~i~~~~k~~~~vVtvEe~~~-GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~~~GL-~~e~ 657 (677)
T PLN02582 580 CKPLDRALIRSLAKSHEVLITVEEGSI-GGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGL-TPSH 657 (677)
T ss_pred CCCCCHHHHHHHhhhCCEEEEECCCCC-CcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCHHHHHHHhCc-CHHH
Confidence 999999999877777788899999987 999999999999864211125788886656432 467999999 9999
Q ss_pred HHHHHHHhh
Q 018167 350 ILDAIKSTV 358 (360)
Q Consensus 350 I~~~i~~~l 358 (360)
|+++|++++
T Consensus 658 I~~~i~~~l 666 (677)
T PLN02582 658 IAATVLNVL 666 (677)
T ss_pred HHHHHHHHH
Confidence 999999887
No 14
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.3e-62 Score=508.73 Aligned_cols=305 Identities=23% Similarity=0.342 Sum_probs=266.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecC
Q 018167 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (360)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f 118 (360)
..+|+++|+++|.+++++||+|+++++|+..++ .++.|+++| |+||||+|||||+|+|+|+|||+.|++||+++ |
T Consensus 318 ~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~---~~~~f~~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~-f 392 (641)
T PRK12571 318 APSYTSVFGEELTKEAAEDSDIVAITAAMPLGT---GLDKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAV-Y 392 (641)
T ss_pred chhHHHHHHHHHHHHHhhCCCEEEEeCCccCCC---ChHHHHHhC-CCcccccCccHHHHHHHHHHHHHCCCEEEEEe-h
Confidence 358999999999999999999999999997433 368999999 99999999999999999999999999999995 9
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a 197 (360)
++|++||||||++++|+++ +|| .+++. ++|..|++|+||+ .+|+++||+||||+|++|+|+.|++.++++|
T Consensus 393 ~~Fl~ra~dQI~~~~a~~~------lpv-~~v~~-~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a 464 (641)
T PRK12571 393 STFLQRGYDQLLHDVALQN------LPV-RFVLD-RAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTA 464 (641)
T ss_pred HHHHHHHHHHHHHHHhhcC------CCe-EEEEE-CCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999999999877 466 55543 4454688888775 8999999999999999999999999999999
Q ss_pred HhC-CCCEEEeccccccccCcccCCCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecccc
Q 018167 198 IRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (360)
Q Consensus 198 ~~~-~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ik 276 (360)
++. ++|+|||+||..+.. ..++++++.+++||+.++++|+|++|||+|++++.|++|++.|+++||+++|||++||+
T Consensus 465 ~~~~~~P~~ir~~r~~~~~--~~~~~~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lk 542 (641)
T PRK12571 465 AAHDDGPIAVRFPRGEGVG--VEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVK 542 (641)
T ss_pred HhCCCCcEEEEEecCcCCc--cccCCCCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCC
Confidence 995 899999888753311 12334446788999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCc-----cccccccCCCCHHHHH
Q 018167 277 PWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPF-----PLVFEPFYMPTKNKIL 351 (360)
Q Consensus 277 P~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~-----~~~~e~~gl~~~~~I~ 351 (360)
|||++.+.+ +.++++++|+|||+..||||++|++++.++++..+..|+++++..|.+. .++++++|+ |+++|+
T Consensus 543 PlD~~~i~s-v~k~~~vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl-~~~~I~ 620 (641)
T PRK12571 543 PLDEALTDL-LVRHHIVVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGL-TAPDIA 620 (641)
T ss_pred CcCHHHHHH-HhhhCCEEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCc-CHHHHH
Confidence 999998854 5566689999999999999999999999987655577999997656543 367999999 999999
Q ss_pred HHHHHhhhC
Q 018167 352 DAIKSTVNY 360 (360)
Q Consensus 352 ~~i~~~l~~ 360 (360)
++|+++++|
T Consensus 621 ~~i~~~l~~ 629 (641)
T PRK12571 621 AAVTGALAR 629 (641)
T ss_pred HHHHHHHHh
Confidence 999998864
No 15
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.7e-61 Score=498.12 Aligned_cols=297 Identities=19% Similarity=0.234 Sum_probs=258.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecC
Q 018167 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (360)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f 118 (360)
+.+|+++|+++|.+++++|++++++++|++. .+ .++.|+++| |+||||+|||||+|+++|+|||+.|++||+. +|
T Consensus 277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~--~~-~~~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~-~f 351 (581)
T PRK12315 277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPG--VF-GLKEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVIF-VN 351 (581)
T ss_pred CcCHHHHHHHHHHHHhccCCCEEEEeCcccc--cc-CcHHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEEE-ee
Confidence 5689999999999999999999999999863 34 358999999 9999999999999999999999999999997 69
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a 197 (360)
++|++||||||+|++|+++ +|| .+++. .+|..+ +|+||+ ++|+++||++|||+|++|+|+.|++.++++|
T Consensus 352 s~Fl~ra~dQi~~d~a~~~------lpv-~~~~~-~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a 422 (581)
T PRK12315 352 STFLQRAYDQLSHDLAINN------NPA-VMIVF-GGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWA 422 (581)
T ss_pred HHHHHHHHHHHHHHHHhcC------CCE-EEEEE-CCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHH
Confidence 9999999999999999887 466 55544 344444 777775 9999999999999999999999999999999
Q ss_pred HhC-CCCEEEeccccccccCcccCCCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhc-CCCeeEEEeccc
Q 018167 198 IRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTL 275 (360)
Q Consensus 198 ~~~-~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~i 275 (360)
++. ++|+|||+||..++. ++..+..+..+|++++++|+|++|||+|++++.|++|++.|+++ ||+++|||++||
T Consensus 423 ~~~~~gP~~ir~~r~~~~~----~~~~~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~i 498 (581)
T PRK12315 423 LTQHEHPVAIRVPEHGVES----GPTVDTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFI 498 (581)
T ss_pred HhCCCCcEEEEEcCCccCC----CCCCccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcC
Confidence 986 799999988865432 11122245567999999999999999999999999999999999 999999999999
Q ss_pred cCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCC-----CccccccccCCCCHHHH
Q 018167 276 IPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDT-----PFPLVFEPFYMPTKNKI 350 (360)
Q Consensus 276 kP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~-----~~~~~~e~~gl~~~~~I 350 (360)
||||++.+.+..++++.+||+|||+..||||++|++++.+.+ .++.+++.++. +..++++++|| |+++|
T Consensus 499 kPlD~~~i~~~~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~-----~~~~~~gi~d~f~~~g~~~~l~~~~Gl-~~~~I 572 (581)
T PRK12315 499 TGLDEELLEKLKEDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYGAKKEFNDRVPVEELYKRNHL-TPEQI 572 (581)
T ss_pred CCCCHHHHHHHHhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC-----CeEEEecCCCCCCCCCCHHHHHHHHCc-CHHHH
Confidence 999999988877777889999999999999999999998753 47888854443 23477999999 99999
Q ss_pred HHHHHHhhh
Q 018167 351 LDAIKSTVN 359 (360)
Q Consensus 351 ~~~i~~~l~ 359 (360)
+++|+++++
T Consensus 573 ~~~i~~~l~ 581 (581)
T PRK12315 573 VEDILSVLK 581 (581)
T ss_pred HHHHHHHhC
Confidence 999999874
No 16
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=4e-60 Score=489.37 Aligned_cols=294 Identities=20% Similarity=0.344 Sum_probs=259.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecCc
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFA 119 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~ 119 (360)
.+||++|+++|.+++++||+++++++|+..++ .+..|+++| |+||||+||+||+|+|+|+|||++|++||+++ |+
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~---~~~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~-f~ 353 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGT---GLVKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAI-YS 353 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCC---CHHHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEEEe-eH
Confidence 68999999999999999999999999986433 356799999 99999999999999999999999999999995 99
Q ss_pred ccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q 018167 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCI 198 (360)
Q Consensus 120 ~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~ 198 (360)
+|++||+|||++++|+++ +|+ .+++.+.++ .+.+|+||+ .+|+++||+||||+|++|+|+.|++.++++++
T Consensus 354 ~F~~ra~dQi~~~~a~~~------~pv-~~v~~~~G~-~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~ 425 (580)
T PRK05444 354 TFLQRAYDQVIHDVALQN------LPV-TFAIDRAGL-VGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTAL 425 (580)
T ss_pred HHHHHHHHHHHHHhhhcC------CCE-EEEEeCCCc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 999999999999999877 466 666555554 567777775 99999999999999999999999999999999
Q ss_pred hC-CCCEEEeccccccccCcccCC-CCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecccc
Q 018167 199 RD-PNPVVFFEPKWLYRLSVEEVP-EDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (360)
Q Consensus 199 ~~-~~P~~i~~~k~l~r~~~~~v~-~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ik 276 (360)
+. ++|+|||++|.... .++ ++.+.+++||++++++|+|++|||+|++++.|++|++.|+ +++|||++|++
T Consensus 426 ~~~~~P~~ir~~r~~~~----~~~~~~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i~ 497 (580)
T PRK05444 426 AYDDGPIAIRYPRGNGV----GVELPELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDARFVK 497 (580)
T ss_pred hCCCCcEEEEecCCCCC----CCCCCCcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcCC
Confidence 76 89999988775432 222 2256789999999999999999999999999999999996 99999999999
Q ss_pred CCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCc-----cccccccCCCCHHHHH
Q 018167 277 PWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPF-----PLVFEPFYMPTKNKIL 351 (360)
Q Consensus 277 P~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~-----~~~~e~~gl~~~~~I~ 351 (360)
|||++.+.+++++++++||+|||+..||||++|++++.++++ +.|+.+++..+.+. .++++++|| |+++|+
T Consensus 498 p~D~~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl-~~~~I~ 573 (580)
T PRK05444 498 PLDEELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNLGLPDEFIDHGSREELLAELGL-DAEGIA 573 (580)
T ss_pred ccCHHHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEEecCCcCCCCCCHHHHHHHHCc-CHHHHH
Confidence 999999999999999999999999999999999999998754 56899997656533 357999999 999999
Q ss_pred HHHHHhh
Q 018167 352 DAIKSTV 358 (360)
Q Consensus 352 ~~i~~~l 358 (360)
++|++++
T Consensus 574 ~~i~~~~ 580 (580)
T PRK05444 574 RRILELL 580 (580)
T ss_pred HHHHhhC
Confidence 9999864
No 17
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.3e-59 Score=482.48 Aligned_cols=273 Identities=21% Similarity=0.337 Sum_probs=237.7
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecC
Q 018167 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (360)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f 118 (360)
..+++++|+++|.+++++||+|+++++|++.|+ .+..|+++| |+||||+|||||+|||+|+|||++|+|||+++ |
T Consensus 356 ~~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt---~~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~-f 430 (641)
T PLN02234 356 TQSYTSCFVEALIAEAEADKDIVAIHAAMGGGT---MLNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCTI-Y 430 (641)
T ss_pred CCCHHHHHHHHHHHHHHHCcCEEEEECCCCCCc---chHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEEEe-h
Confidence 468999999999999999999999999997432 378999999 99999999999999999999999999999996 9
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a 197 (360)
++|++||||||+|++|+++ +|+ .+++.+ .|..|.+|+||+ .+|+++||+||||+|++|+|+.|++.+++++
T Consensus 431 s~Fl~RA~DQI~~dva~~~------lpV-~~v~~~-aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a 502 (641)
T PLN02234 431 SSFMQRAYDQVVHDVDLQK------LPV-RFAIDR-AGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATA 502 (641)
T ss_pred HHHHHHHHHHHHHHHhhcC------CCE-EEEEeC-CccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999999999887 466 565544 455677787775 9999999999999999999999999999998
Q ss_pred HhC-CCCEEEeccccccccCcccCCC--CCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc
Q 018167 198 IRD-PNPVVFFEPKWLYRLSVEEVPE--DDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 198 ~~~-~~P~~i~~~k~l~r~~~~~v~~--~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
+.. ++|+|||+||..+... .+++ ..+.+++||++++++|+|++||++|++++.|++|+++|+++||+++|||++|
T Consensus 503 ~~~~~~Pv~ir~~R~~~~~~--~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rs 580 (641)
T PLN02234 503 AAIDDRPSCFRYHRGNGIGV--SLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVADARF 580 (641)
T ss_pred HhCCCCCEEEEeeccccccc--ccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 865 6999999998754221 1222 2346789999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEE
Q 018167 275 LIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVAR 327 (360)
Q Consensus 275 ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~ 327 (360)
+||||++.+.+.+++++.|||+|||.. ||+|++|++++++.+...-..|+.|
T Consensus 581 ikPlD~~~i~sl~k~~~~vVt~Ee~~~-GG~Gs~Va~~l~e~~~~~~~~~~~~ 632 (641)
T PLN02234 581 CKPLDVALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGKLKVYR 632 (641)
T ss_pred cCCCCHHHHHHHHHhCCEEEEECCCCC-CcHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999998877777788899999976 9999999999999874333345544
No 18
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=9e-54 Score=445.74 Aligned_cols=295 Identities=16% Similarity=0.150 Sum_probs=243.2
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchh-----HHHHhCCCcEEechhHHHHHHHHHHHHhc-CC
Q 018167 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTG-----LADRFGKSRVFNTPLCEQGIVGFAIGLAA-MG 109 (360)
Q Consensus 36 ~~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~-----~~~~~gp~r~i~~GIaE~~~vg~AaGlA~-~G 109 (360)
++.+.++|++++++|.++++++|+++++++|++.++ .+.. |+++| |+||||+|||||+|+++|+|||+ .|
T Consensus 345 ~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~---~~~~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~~gG 420 (653)
T TIGR00232 345 KLQALATRKYSQNVLNAIANVLPELLGGSADLAPSN---LTKWKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIALHGG 420 (653)
T ss_pred cCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccC---CcccccccchhhcC-CCCeEeecccHHHHHHHHHHHHHcCC
Confidence 455689999999999999999999999999997433 2333 88999 99999999999999999999999 68
Q ss_pred CeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHH
Q 018167 110 NRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPR 188 (360)
Q Consensus 110 ~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~ 188 (360)
++||++ +|++|++|+++|||+. |+++ +|| .++++|++..+|.+|+||+ +||+++||+||||+|++|+|+.
T Consensus 421 ~~p~~~-tf~~F~~r~~~~ir~~-a~~~------lpV-~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~ 491 (653)
T TIGR00232 421 FKPYGG-TFLMFVDYARPAIRLA-ALMK------LPV-IYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGN 491 (653)
T ss_pred CeEEEE-EhHHHHHHHHHHHHHH-HhcC------CCE-EEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHH
Confidence 999999 6999999999999976 9887 477 8888888888888888775 9999999999999999999999
Q ss_pred HHHHHHHHhH-hCCCCEEEeccccccccCcccCCCCC-cccCCCceEEe--eeCCcEEEEEechhHHHHHHHHHHHHhcC
Q 018167 189 QAKGLLLSCI-RDPNPVVFFEPKWLYRLSVEEVPEDD-YMLPLSEAEVI--REGSDITLVGWGAQLSIMEQACLDAEKEG 264 (360)
Q Consensus 189 e~~~~l~~a~-~~~~P~~i~~~k~l~r~~~~~v~~~~-~~~~~Gk~~vl--~~G~dv~Iia~G~~~~~al~Aa~~L~~~G 264 (360)
|++.++++++ +.++|+|||++| .+.+.+++.+ ..+..|+ +++ ++|.|++||++|+++.+|++|++.|+++|
T Consensus 492 E~~~~~~~a~~~~~gP~~irl~r----~~~~~~~~~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~~L~~~G 566 (653)
T TIGR00232 492 ETAAAWKYALESQDGPTALILSR----QNLPQLEESSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAKKLAAEN 566 (653)
T ss_pred HHHHHHHHHHhcCCCcEEEEEcC----CccCCCCcccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHHHHHhcC
Confidence 9999999999 568999995555 4555444333 4577786 677 67999999999999999999999999999
Q ss_pred CCeeEEEeccccCCcHHH---HHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCccccccc
Q 018167 265 ISCELIDLKTLIPWDKET---VEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEP 341 (360)
Q Consensus 265 i~v~Vi~~~~ikP~d~~~---l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~~~~e~ 341 (360)
|+++|||++|++|||++. +.+.++++..+||+|||+. +||.. .. .+......+.++ +...+..+++++
T Consensus 567 i~~~VI~~~~ikpld~~~~~~~~~~~~~~~~vvtvEe~~~-~g~~~----~~---~~~~~~igvd~f-g~sg~~~~L~~~ 637 (653)
T TIGR00232 567 IKVRVVSMPSFDLFDKQDEEYRESVLPANVTRLAVEAGAA-DEWYK----YA---GLVGAILGMDSF-GESAPGDKLFEE 637 (653)
T ss_pred CcEEEEecccCcccccCCHHHHHHHhcccCceEEEecccH-hHHHH----hc---CCcceEEEecCC-cCCCCHHHHHHH
Confidence 999999999999997755 7777777788999999976 45531 11 110001112233 334455688999
Q ss_pred cCCCCHHHHHHHHHHhh
Q 018167 342 FYMPTKNKILDAIKSTV 358 (360)
Q Consensus 342 ~gl~~~~~I~~~i~~~l 358 (360)
||| |+++|+++|++++
T Consensus 638 ~Gl-t~e~I~~~i~~~~ 653 (653)
T TIGR00232 638 FGF-TVENVVAKAKKLL 653 (653)
T ss_pred hCC-CHHHHHHHHHHhC
Confidence 999 9999999998864
No 19
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=2e-53 Score=443.03 Aligned_cols=294 Identities=15% Similarity=0.113 Sum_probs=240.5
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCc--cccchhHHHHhCCCcEEechhHHHHHHHHHHHHhc-CCCee
Q 018167 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGV--FRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAA-MGNRA 112 (360)
Q Consensus 36 ~~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~--~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~-~G~~p 112 (360)
++.++++|++++++|.++++++|+++++++|++.++. +.....|+++| |+||||+||+||+|+++|+|||+ .|++|
T Consensus 351 ~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P 429 (663)
T PRK12753 351 NPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVP 429 (663)
T ss_pred cccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeE
Confidence 3557899999999999999999999999999974331 11236799999 99999999999999999999999 78999
Q ss_pred EEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHHHHH
Q 018167 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAK 191 (360)
Q Consensus 113 ~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~ 191 (360)
|++ +|++|++|++||||+. |+++ +|| .+|+++++...|++|+||+ +||+++||+||||+|++|+|+.|++
T Consensus 430 ~~~-tf~~F~~r~~~qir~~-a~~~------l~V-~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~ 500 (663)
T PRK12753 430 YTA-TFLMFVEYARNAARMA-ALMK------ARQ-IMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAA 500 (663)
T ss_pred EEE-ehHHHHHHHHHHHHHH-HhcC------CCe-EEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHH
Confidence 999 5999999999999975 9888 477 8888898888899888885 9999999999999999999999999
Q ss_pred HHHHHhHh-CCCCEEEeccccccccCcccCCCCC---cccCCCceEEeeeCC---cEEEEEechhHHHHHHHHHHHHhcC
Q 018167 192 GLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPEDD---YMLPLSEAEVIREGS---DITLVGWGAQLSIMEQACLDAEKEG 264 (360)
Q Consensus 192 ~~l~~a~~-~~~P~~i~~~k~l~r~~~~~v~~~~---~~~~~Gk~~vl~~G~---dv~Iia~G~~~~~al~Aa~~L~~~G 264 (360)
.+++++++ .++|+|| |+.|+..+.++... ..+..|+ +++++|+ |++||++|+++++|++|+++|+++|
T Consensus 501 ~~~~~al~~~~gP~~i----rl~R~~~~~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~~~g 575 (663)
T PRK12753 501 VAWKLAIERHNGPTAL----ILSRQNLAQQERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLTAEG 575 (663)
T ss_pred HHHHHHHhcCCCCEEE----EecCCCCCCCCCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 99999998 5899999 55556666555432 3466776 8888864 9999999999999999999999999
Q ss_pred CCeeEEEeccccCCcHHHH--HHHHhc--CCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEec----CCCCcc
Q 018167 265 ISCELIDLKTLIPWDKETV--EASVRK--TGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCG----LDTPFP 336 (360)
Q Consensus 265 i~v~Vi~~~~ikP~d~~~l--~~~~~~--~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~----~~~~~~ 336 (360)
|+++|||++|+||||++.+ ++.+.. ..+.|++|+|. +..++++. ..+..++|. ...+..
T Consensus 576 i~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~-----~~~~~~~~--------~~~~~~iGvd~Fg~sg~~~ 642 (663)
T PRK12753 576 RNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGI-----ADYWYKYV--------GLKGAIIGMTGFGESAPAD 642 (663)
T ss_pred CCcEEEECCcCCccchhHHHHHHhhcccccceEEEEccCh-----HHHHHHHc--------CCCCeEEEeCCCcCcCCHH
Confidence 9999999999999999976 222222 12348999982 22222221 223444532 333456
Q ss_pred ccccccCCCCHHHHHHHHHHhh
Q 018167 337 LVFEPFYMPTKNKILDAIKSTV 358 (360)
Q Consensus 337 ~~~e~~gl~~~~~I~~~i~~~l 358 (360)
+++++||| |+++|++++++++
T Consensus 643 ~l~~~~Gl-t~~~Iv~~i~~~~ 663 (663)
T PRK12753 643 KLFPFFGF-TVENIVAKAKKLL 663 (663)
T ss_pred HHHHHhCC-CHHHHHHHHHHhC
Confidence 88999999 9999999998864
No 20
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-54 Score=423.45 Aligned_cols=297 Identities=22% Similarity=0.272 Sum_probs=254.2
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCC-eeEEEecC
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGN-RAIAEIQF 118 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~-~p~~~~~f 118 (360)
.++|++|+++|..+++.+|+|+++++|+..++ .++-|.++| |+|||++||+||||+++|+|+|..|. +||+. +|
T Consensus 320 ~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st---~td~~~~~~-p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~~-tf 394 (632)
T KOG0523|consen 320 VATRKAFGEALAALAEADPRVIGGSADLKNST---LTDFFPKRF-PERFIECGIAEQNMVGIANGIACRGRTIPFCG-TF 394 (632)
T ss_pred hhHHHHHHHHHHHHhhcCcCeEEEecccCCCc---hhhhccccC-ccceEEEeeehhhhHHhhhchhcCCCccchhH-HH
Confidence 89999999999999999999999999998654 367888999 99999999999999999999999998 99999 69
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a 197 (360)
+.|++|||||+|+++-.+ .++ ..+.+|.+++.|+||++|+ +||+++||+||||+|++|+|..|+..+++.|
T Consensus 395 ~~F~trA~dqvr~~a~s~-------~~v-~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~PaD~~et~~av~~A 466 (632)
T KOG0523|consen 395 AAFFTRAFDQVRMGALSQ-------ANV-IYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPADGNETENAVATA 466 (632)
T ss_pred HHHHHHhhhheeehhhcc-------CCc-EEEEEeccccccCCCcccccHHHHHHHHhCCCceEEecCchHHHHHHHHHH
Confidence 999999999999875433 256 6788899999999999996 9999999999999999999999999999999
Q ss_pred HhCCC-CEEEeccccccccCcccCCCCCcccCCCceE-EeeeCC-cEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc
Q 018167 198 IRDPN-PVVFFEPKWLYRLSVEEVPEDDYMLPLSEAE-VIREGS-DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 198 ~~~~~-P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~-vl~~G~-dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
++.++ |.++ ++.|+..+.++ ....+.+||+. ++++++ ||++|++|+++++|++||+.|+++||+++|+|+++
T Consensus 467 a~~~~~p~i~----~~~r~~~~~~~-~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~~~gi~vrVvd~~~ 541 (632)
T KOG0523|consen 467 ANTKGTPSIR----TLSRQNLPIYN-NTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLSEDGIKVRVVDPFT 541 (632)
T ss_pred HhcCCCeeEE----EecCccccccC-CCchhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHHhcCceEEEecccc
Confidence 99765 8877 66667766654 34457888887 677776 99999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHhcC-CeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEe----cCCCCccccccccCCCCHHH
Q 018167 275 LIPWDKETVEASVRKT-GRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVC----GLDTPFPLVFEPFYMPTKNK 349 (360)
Q Consensus 275 ikP~d~~~l~~~~~~~-~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~----~~~~~~~~~~e~~gl~~~~~ 349 (360)
+||||..+|+++.+.+ .++.|+|+|...||++.++........ ...+..++ +.+.+.+++++.||+ |+++
T Consensus 542 ~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~~~----~~~~~~~~~~~~~~sG~p~ell~~fGi-t~~~ 616 (632)
T KOG0523|consen 542 WKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKYP----GILVPSLGVDTFGRSGPPPELLKMFGI-TARH 616 (632)
T ss_pred eeecchHHhhhhhcccceeEEEccCCCCCcchhheeeehhcccC----CccceeeccccCCcCCCCHHHHHHhCC-CHHH
Confidence 9999999999988877 466777888877888887776554421 11122231 233455789999999 9999
Q ss_pred HHHHHHHhhh
Q 018167 350 ILDAIKSTVN 359 (360)
Q Consensus 350 I~~~i~~~l~ 359 (360)
|++++++++.
T Consensus 617 Ia~~a~~~~~ 626 (632)
T KOG0523|consen 617 IAAAALSLIG 626 (632)
T ss_pred HHHHHHHHHh
Confidence 9999999886
No 21
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=6.4e-53 Score=439.30 Aligned_cols=289 Identities=16% Similarity=0.179 Sum_probs=234.3
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHH------HHhCCCcEEechhHHHHHHHHHHHHhcCC-C
Q 018167 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLA------DRFGKSRVFNTPLCEQGIVGFAIGLAAMG-N 110 (360)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~------~~~gp~r~i~~GIaE~~~vg~AaGlA~~G-~ 110 (360)
.+.++|++|+++|.+++++||+++++++|++.++. +..|. ++| |+||||+|||||+|+|+|+|||+.| +
T Consensus 317 ~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~---~~~~~~~~f~~~~~-p~R~~d~GIaE~~~vg~A~GlA~~G~~ 392 (624)
T PRK05899 317 EKVATRKASGKALNALAKALPELVGGSADLAGSNN---TKIKGSKDFAPEDY-SGRYIHYGVREFAMAAIANGLALHGGF 392 (624)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccC---cccccccccCccCC-CCCeeeeChhHHHHHHHHHHHHHcCCC
Confidence 55788999999999999999999999999974331 33343 577 8999999999999999999999999 9
Q ss_pred eeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCC-CchHHHHHcCCCCcEEEeeCCHHH
Q 018167 111 RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQ 189 (360)
Q Consensus 111 ~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~H-s~~d~a~~r~iPn~~V~~P~d~~e 189 (360)
+||++ +|++|++|++||||+. |+++ +|+ .++..+.|...+.+|+|| ++||+++||++|||+|++|+|++|
T Consensus 393 ~pv~~-t~~~F~~r~~~qir~~-~~~~------~pv-~~v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e 463 (624)
T PRK05899 393 IPFGG-TFLVFSDYARNAIRLA-ALMK------LPV-IYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANE 463 (624)
T ss_pred eEEEE-EcHHHHHHHHHHHHHH-HhcC------CCE-EEEEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHH
Confidence 99999 5999999999999985 8766 466 566555555567677666 599999999999999999999999
Q ss_pred HHHHHHHhHhC-CCCEEEeccccccccCcccCCCC--CcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCC
Q 018167 190 AKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPED--DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGIS 266 (360)
Q Consensus 190 ~~~~l~~a~~~-~~P~~i~~~k~l~r~~~~~v~~~--~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~ 266 (360)
++.+++++++. ++|+|||++| ...+.+++. .+.++.|+ +++++|.|+|||++|+++++|++|++.|+++||+
T Consensus 464 ~~~~l~~a~~~~~~P~~ir~~r----~~~~~~~~~~~~~~~~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~gi~ 538 (624)
T PRK05899 464 TAAAWKYALERKDGPSALVLTR----QNLPVLERTAQEEGVAKGG-YVLRDDPDVILIATGSEVHLALEAADELEAEGIK 538 (624)
T ss_pred HHHHHHHHHHcCCCCEEEEEeC----CCCCCcCCccccccccCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhcCCc
Confidence 99999999998 8999997765 444444332 25688886 8899999999999999999999999999999999
Q ss_pred eeEEEeccccCCcHHH---HHHHH-hcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCC----CCcccc
Q 018167 267 CELIDLKTLIPWDKET---VEASV-RKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLD----TPFPLV 338 (360)
Q Consensus 267 v~Vi~~~~ikP~d~~~---l~~~~-~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~----~~~~~~ 338 (360)
++|||++||+|||++. +...+ .....+|++|++.. +|| ..++ ..+++++|..+ ++..++
T Consensus 539 ~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~-~g~----~~~~--------~~~~~~iGv~~f~~~g~~~~l 605 (624)
T PRK05899 539 VRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVA-DGW----YKYV--------GLDGKVLGIDTFGASAPADEL 605 (624)
T ss_pred EEEEECCCcchhccCcHHHHhccccccccceEEEccCCc-cch----hhhc--------CCCceEEECCCCCCCCCHHHH
Confidence 9999999999999983 43444 33456677776654 666 2111 23556774433 122467
Q ss_pred ccccCCCCHHHHHHHHHHhh
Q 018167 339 FEPFYMPTKNKILDAIKSTV 358 (360)
Q Consensus 339 ~e~~gl~~~~~I~~~i~~~l 358 (360)
++++|| |+++|+++|++++
T Consensus 606 ~~~~gl-~~~~I~~~i~~~~ 624 (624)
T PRK05899 606 FKEFGF-TVENIVAAAKELL 624 (624)
T ss_pred HHHhCC-CHHHHHHHHHHhC
Confidence 999999 9999999998864
No 22
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=1.7e-52 Score=436.75 Aligned_cols=295 Identities=14% Similarity=0.172 Sum_probs=240.0
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccc--cchhHHHHhCC-CcEEechhHHHHHHHHHHHHhc-CCCee
Q 018167 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFR--CTTGLADRFGK-SRVFNTPLCEQGIVGFAIGLAA-MGNRA 112 (360)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~--~~~~~~~~~gp-~r~i~~GIaE~~~vg~AaGlA~-~G~~p 112 (360)
....++|++++++|.++++.+|+++++++|+..++.+. ....|+++| | +||||+|||||||+++|+|||+ .|++|
T Consensus 352 ~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~-P~~rfi~~GIaEq~mv~~AaGlA~~~G~~P 430 (661)
T PTZ00089 352 DKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKAS-PEGRYIRFGVREHAMCAIMNGIAAHGGFIP 430 (661)
T ss_pred CcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccC-CCCCeeeeeecHHHHHHHHHHHHHcCCCeE
Confidence 45678999999999999999999999999997433110 114799999 8 8999999999999999999999 78999
Q ss_pred EEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHHHHH
Q 018167 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAK 191 (360)
Q Consensus 113 ~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~ 191 (360)
|++ +|++|++|+|||||+. |+++ +|| .+++++++..+|++|+||+ +||+++||+||||+|++|+|+.|++
T Consensus 431 ~~~-tf~~Fl~Ra~dqir~~-al~~------lpV-~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~ 501 (661)
T PTZ00089 431 FGA-TFLNFYGYALGAVRLA-ALSH------HPV-IYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETS 501 (661)
T ss_pred EEE-ehHHHHHHHHHHHHHH-HhcC------CCe-EEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHH
Confidence 999 5999999999999865 9888 577 8888888877899888885 9999999999999999999999999
Q ss_pred HHHHHhHh-CCCCEEEeccccccccCcccCCCCCcccCCCceEEeeeC---CcEEEEEechhHHHHHHHHHHHHhcCCCe
Q 018167 192 GLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREG---SDITLVGWGAQLSIMEQACLDAEKEGISC 267 (360)
Q Consensus 192 ~~l~~a~~-~~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G---~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v 267 (360)
.+++++++ .++|+|||+|| +..+.++..+..+..++++++++| .|++||++|+++.+|++|++.|++ |+++
T Consensus 502 ~~l~~al~~~~gP~~irl~R----~~~~~~~~~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~-Gi~~ 576 (661)
T PTZ00089 502 GAYALALANAKTPTILCLSR----QNTPPLPGSSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK-ELNV 576 (661)
T ss_pred HHHHHHHHcCCCCEEEEecC----CCCCCcCCCccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHHHHhc-CCCe
Confidence 99999995 58999995554 555555544445556777899975 799999999999999999999999 9999
Q ss_pred eEEEeccccCCcHHHHHHH---Hh-cCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCccccccccC
Q 018167 268 ELIDLKTLIPWDKETVEAS---VR-KTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFY 343 (360)
Q Consensus 268 ~Vi~~~~ikP~d~~~l~~~---~~-~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~~~~e~~g 343 (360)
+|||++|+||||.+.+... +. +...++++|+|+.. ||...+ . . ...+..+ +...+..+++++||
T Consensus 577 ~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~-g~~~~~----~-~-----~igv~~F-g~sg~~~~l~~~~G 644 (661)
T PTZ00089 577 RVVSMPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSF-GWEKYS----H-V-----HVGISGF-GASAPANALYKHFG 644 (661)
T ss_pred EEEeCCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHH-HHHhcC----C-e-----EEECCCc-cccCCHHHHHHHhC
Confidence 9999999999999976433 33 34568999999764 332100 0 0 0011122 33445568899999
Q ss_pred CCCHHHHHHHHHHhhh
Q 018167 344 MPTKNKILDAIKSTVN 359 (360)
Q Consensus 344 l~~~~~I~~~i~~~l~ 359 (360)
| |+++|+++|++++.
T Consensus 645 l-~~e~I~~~i~~~l~ 659 (661)
T PTZ00089 645 F-TVENVVEKARALAA 659 (661)
T ss_pred C-CHHHHHHHHHHHhh
Confidence 9 99999999998874
No 23
>PLN02790 transketolase
Probab=100.00 E-value=4.8e-52 Score=432.84 Aligned_cols=292 Identities=15% Similarity=0.163 Sum_probs=243.2
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCc--cccchhHHHH-hCCCcEEechhHHHHHHHHHHHHhcC--CCee
Q 018167 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGV--FRCTTGLADR-FGKSRVFNTPLCEQGIVGFAIGLAAM--GNRA 112 (360)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~--~~~~~~~~~~-~gp~r~i~~GIaE~~~vg~AaGlA~~--G~~p 112 (360)
.+.++|++++++|..+++.+|+++++++|+..++. +..+..|+++ | |+||||+|||||||+++|+|||++ |++|
T Consensus 342 ~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~-p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P 420 (654)
T PLN02790 342 PADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSSGLIP 420 (654)
T ss_pred cchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCC-CCCeEEeeechHHHHHHHHHHHhcCCCcEE
Confidence 35789999999999999999999999999974321 1135789888 6 899999999999999999999996 6999
Q ss_pred EEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHHHHH
Q 018167 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAK 191 (360)
Q Consensus 113 ~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~ 191 (360)
|++ +|+.|+.|+++|||+. |+++ +|| .++++|++..+|++|+||+ +||+++||+||||+|++|+|+.|++
T Consensus 421 ~~~-tf~~F~~~~~~~ir~~-al~~------lpV-~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~ 491 (654)
T PLN02790 421 YCA-TFFVFTDYMRAAMRLS-ALSE------AGV-IYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETA 491 (654)
T ss_pred EEE-ecHHHHHHHHHHHHHH-HhcC------CCe-EEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHH
Confidence 999 6999999999999865 9888 477 8888888777898888885 9999999999999999999999999
Q ss_pred HHHHHhHh-CCCCEEEeccccccccCcccCCCC-CcccCCCceEEeeeC-----CcEEEEEechhHHHHHHHHHHHHhcC
Q 018167 192 GLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPED-DYMLPLSEAEVIREG-----SDITLVGWGAQLSIMEQACLDAEKEG 264 (360)
Q Consensus 192 ~~l~~a~~-~~~P~~i~~~k~l~r~~~~~v~~~-~~~~~~Gk~~vl~~G-----~dv~Iia~G~~~~~al~Aa~~L~~~G 264 (360)
.+++++++ .++|+|||+|| +..+.++.. ...+.+|+ ++++++ .|++||++|+++.+|++|++.|+++|
T Consensus 492 ~~l~~al~~~~gP~~irl~R----~~~~~~~~~~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~~g 566 (654)
T PLN02790 492 GAYKVAVTNRKRPTVLALSR----QKVPNLPGTSIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAAKAAKELRKEG 566 (654)
T ss_pred HHHHHHHHcCCCCEEEEecC----CCCCCCCCCcccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHHHHHHHHHhcC
Confidence 99999997 58999995554 555555433 35678897 667764 79999999999999999999999999
Q ss_pred CCeeEEEeccccCCcHHHHH---HHH-hcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEe----cCCCCcc
Q 018167 265 ISCELIDLKTLIPWDKETVE---ASV-RKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVC----GLDTPFP 336 (360)
Q Consensus 265 i~v~Vi~~~~ikP~d~~~l~---~~~-~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~----~~~~~~~ 336 (360)
|+++|||++|+||||++.+. +.+ ++++.+||+|||+. +||++.+ . .+..+++ +...+..
T Consensus 567 i~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~-~G~~~~~----~--------~~~~~igvd~Fg~sg~~~ 633 (654)
T PLN02790 567 KKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGST-FGWEKYV----G--------SKGKVIGVDRFGASAPAG 633 (654)
T ss_pred CceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccc-hhHHHhc----C--------CCceEEEeCCCcCcCCHH
Confidence 99999999999999998754 555 56678999999975 8876521 1 1223332 2333446
Q ss_pred ccccccCCCCHHHHHHHHHHhh
Q 018167 337 LVFEPFYMPTKNKILDAIKSTV 358 (360)
Q Consensus 337 ~~~e~~gl~~~~~I~~~i~~~l 358 (360)
++++++|| |+++|+++|++++
T Consensus 634 ~l~~~~Gl-t~e~I~~~i~~~~ 654 (654)
T PLN02790 634 ILYKEFGF-TVENVVAAAKSLL 654 (654)
T ss_pred HHHHHhCC-CHHHHHHHHHHhC
Confidence 78999999 9999999998764
No 24
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=5.4e-52 Score=430.20 Aligned_cols=297 Identities=13% Similarity=0.141 Sum_probs=243.9
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCc--cccchhHHHHhCCCcEEechhHHHHHHHHHHHHhc-CCCeeE
Q 018167 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGV--FRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAA-MGNRAI 113 (360)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~--~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~-~G~~p~ 113 (360)
+.+.++|++++++|.++++.+|+++++++|++.++. +..+..|+++| |+||||+||+||+|+++|+|||+ .|++||
T Consensus 352 ~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf 430 (663)
T PRK12754 352 PAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFLPY 430 (663)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccC-CCCeEeeccchhhHHHHHhhHHhcCCCeEE
Confidence 346799999999999999999999999999973321 11246898999 99999999999999999999999 689999
Q ss_pred EEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHHHHHH
Q 018167 114 AEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKG 192 (360)
Q Consensus 114 ~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~ 192 (360)
++ +|++|+.|++||||+. |+++ +|| .+|++|.+..+|++|+||+ +||+++||+||||+|+.|+|+.|+..
T Consensus 431 ~~-tf~~F~~r~~~qir~~-a~~~------l~V-~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~ 501 (663)
T PRK12754 431 TS-TFLMFVEYARNAVRMA-ALMK------QRQ-VMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAV 501 (663)
T ss_pred EE-eeHHHHHHHHHHHHHH-HHcC------CCe-EEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHH
Confidence 99 6999999999999985 9888 577 8899999988999888885 99999999999999999999999999
Q ss_pred HHHHhHhC-CCCEEEeccccccccCcccCCCC---CcccCCCceEEeeeCC---cEEEEEechhHHHHHHHHHHHHhcCC
Q 018167 193 LLLSCIRD-PNPVVFFEPKWLYRLSVEEVPED---DYMLPLSEAEVIREGS---DITLVGWGAQLSIMEQACLDAEKEGI 265 (360)
Q Consensus 193 ~l~~a~~~-~~P~~i~~~k~l~r~~~~~v~~~---~~~~~~Gk~~vl~~G~---dv~Iia~G~~~~~al~Aa~~L~~~Gi 265 (360)
+++++++. ++|+|| |+.|+..|.++.. ...+..|+ +++++|+ |++||++|+++.+|++|++.|+++||
T Consensus 502 ~~~~a~~~~~gP~yi----rl~R~~~p~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi 576 (663)
T PRK12754 502 AWKYGVERQDGPTAL----ILSRQNLAQQERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGV 576 (663)
T ss_pred HHHHHHhCCCCCEEE----EeCCCCCCCCCCccchhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHHhhCC
Confidence 99999987 799999 6666666665431 23566776 8888864 99999999999999999999999999
Q ss_pred CeeEEEeccccCCcHHH--HHHHHhcCC--eEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCccccccc
Q 018167 266 SCELIDLKTLIPWDKET--VEASVRKTG--RLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEP 341 (360)
Q Consensus 266 ~v~Vi~~~~ikP~d~~~--l~~~~~~~~--~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~~~~e~ 341 (360)
+++|||++|++|||++. .++.+.... ..|++|.+ ...||... +...+ ....+.++ |.+.+..+++++
T Consensus 577 ~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~-~~~~w~~~----~~~~~---~~igi~~F-G~Sg~~~~l~~~ 647 (663)
T PRK12754 577 KARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAG-IADYWYKY----VGLNG---AIVGMTTF-GESAPAELLFEE 647 (663)
T ss_pred CcEEEEcCccCcCCCCCHHHHHhcCccccccceEeecc-cccchhhh----ccCCC---CEEEeCCC-CCCCCHHHHHHH
Confidence 99999999999999972 333333221 34888886 34455442 32222 11234455 566777789999
Q ss_pred cCCCCHHHHHHHHHHhh
Q 018167 342 FYMPTKNKILDAIKSTV 358 (360)
Q Consensus 342 ~gl~~~~~I~~~i~~~l 358 (360)
||| |+++|++++++++
T Consensus 648 ~G~-t~e~I~~~~~~~~ 663 (663)
T PRK12754 648 FGF-TVDNVVAKAKALL 663 (663)
T ss_pred hCC-CHHHHHHHHHHhC
Confidence 999 9999999998865
No 25
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=5.5e-48 Score=404.81 Aligned_cols=301 Identities=16% Similarity=0.124 Sum_probs=251.9
Q ss_pred CCcccHHHHHHHHHHHHHh---cCCCEEEEcCCCCCCC----ccc------------------cchhHHHHhCCCcEEec
Q 018167 37 GKSLNLYSAINQALHIALE---TDPRAYVFGEDVGFGG----VFR------------------CTTGLADRFGKSRVFNT 91 (360)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~---~~~~vv~i~~Dl~~g~----~~~------------------~~~~~~~~~gp~r~i~~ 91 (360)
+++++++.||+.+|..|++ ..++||.+.+|.+.++ .|. ....+++.+ |+||||+
T Consensus 487 ~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~-p~R~ie~ 565 (889)
T TIGR03186 487 GKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDT-DGQILEE 565 (889)
T ss_pred CCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcC-CCcEEEe
Confidence 4679999999999777765 4678999999987332 111 133567889 9999999
Q ss_pred hhHHHHHHH--HHHHHhcC----CCeeEEEecCcccH-HHHHHHHHHHHHhcccccCCCccccceEEEcCCC-CCCCCCC
Q 018167 92 PLCEQGIVG--FAIGLAAM----GNRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG-AVGHGGH 163 (360)
Q Consensus 92 GIaE~~~vg--~AaGlA~~----G~~p~~~~~f~~F~-~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g-~~g~~g~ 163 (360)
||+||||++ +|+|+|++ |++||+. +|++|. +|++|||+++ |+++ .++ .++..+.|. ..+++|.
T Consensus 566 GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~-tya~F~~~Ra~Dqir~a-~~~~------a~v-~lvG~~aG~tTlg~eG~ 636 (889)
T TIGR03186 566 GISEAGAISSWIAAATSYSVHDLPMLPFYI-YYSMFGFQRIGDLIWAA-ADQR------ARG-FLIGATSGKTTLGGEGL 636 (889)
T ss_pred chhhHHHHHHHHHHHHhhhhcCCCceEEEE-ehHHhHhhhHHHHHHHH-hhcC------CCc-EEEEECCCccCCCCCcc
Confidence 999999999 99999998 8899999 699996 9999999998 8776 466 777777777 4666666
Q ss_pred CC-CchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh------CCCCEEEeccccccccCc--ccCCCCC-cccCCCc--
Q 018167 164 YH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR------DPNPVVFFEPKWLYRLSV--EEVPEDD-YMLPLSE-- 231 (360)
Q Consensus 164 ~H-s~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~------~~~P~~i~~~k~l~r~~~--~~v~~~~-~~~~~Gk-- 231 (360)
+| +++|+++||+||||+|+.|+|+.|++.+++++++ .++|+|| |++|.+. |.+++++ ..+..|+
T Consensus 637 tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~Yl----Rl~r~~~~~p~~~~~~~~~~~~gi~k 712 (889)
T TIGR03186 637 QHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYL----TVTNENYAQPSLPEDRLDAVRRGILK 712 (889)
T ss_pred cccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEE----EeCCCCCCCCCcCCCcccchhcchhh
Confidence 66 6999999999999999999999999999999777 5799999 6666544 4555443 3355554
Q ss_pred e-EEee----eCCcEEEEEechhHHHHHHHHHHHHhc-CCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCC---CcC
Q 018167 232 A-EVIR----EGSDITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA---PVT 302 (360)
Q Consensus 232 ~-~vl~----~G~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~---~~~ 302 (360)
+ ++++ +|+|++|+++|.++++|++|++.|+++ ||+++|+|++|+||||++.+. ++++++++++||| ++.
T Consensus 713 g~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~~~~v~ 790 (889)
T TIGR03186 713 GMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPPSPHVA 790 (889)
T ss_pred eeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCcccccccccccHh
Confidence 5 7788 578999999999999999999999998 999999999999999999986 7889999999998 999
Q ss_pred CchHH-------------HHHHHHHHhccccCCCceEEEecCCCC-----ccccccccCCCCHHHHHHHHHHhhh
Q 018167 303 GGFGA-------------EISASILERCFLRLEAPVARVCGLDTP-----FPLVFEPFYMPTKNKILDAIKSTVN 359 (360)
Q Consensus 303 GGlgs-------------~v~~~l~~~~~~~l~~~~~~i~~~~~~-----~~~~~e~~gl~~~~~I~~~i~~~l~ 359 (360)
||||+ ++++++.+.. +.++.++|. |.+ ..+++++||+ |+++|+.+++++|.
T Consensus 791 ggLg~~~~p~va~~D~~~avae~i~~~~----p~~~~~LG~-D~FG~Sgtr~~Lr~~fgl-da~~Iv~aal~~L~ 859 (889)
T TIGR03186 791 QALGATQGPVIAATDYVRAVPELIRAYV----PRRYVTLGT-DGFGRSDTRAALRAFFEV-DRASIVIAALQALA 859 (889)
T ss_pred hhhCCCCCCeeeecchHHHHHHHHHhhC----CCCEEEecc-CCCCCcCCHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 99999 9999998853 678888854 532 2468999999 99999999998763
No 26
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=3.2e-47 Score=399.09 Aligned_cols=301 Identities=10% Similarity=0.042 Sum_probs=248.1
Q ss_pred CCcccHHHHHHHHHHHHHhc---CCCEEEEcCCCCCCCcc----c------------------cchhHHHHhCCCcEEec
Q 018167 37 GKSLNLYSAINQALHIALET---DPRAYVFGEDVGFGGVF----R------------------CTTGLADRFGKSRVFNT 91 (360)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~---~~~vv~i~~Dl~~g~~~----~------------------~~~~~~~~~gp~r~i~~ 91 (360)
++++++|.||+++|.+|++. +++||.+++|++.++.+ . .+..|+++| |+||||+
T Consensus 492 ~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~-PgRf~e~ 570 (891)
T PRK09405 492 EREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESK-DGQILQE 570 (891)
T ss_pred CCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcC-CCcEEEe
Confidence 46789999999999999996 99999999998842211 0 125688999 9999999
Q ss_pred hhHHHHHHH--HHHHHhcC----CCeeEEEecCccc-HHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCC
Q 018167 92 PLCEQGIVG--FAIGLAAM----GNRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY 164 (360)
Q Consensus 92 GIaE~~~vg--~AaGlA~~----G~~p~~~~~f~~F-~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~ 164 (360)
||+||||++ +|+|+|++ |++||+. +|++| ++|++||||+++|+++ .++ .++.++.+...+..|.+
T Consensus 571 GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~-tya~F~~~Ra~Dqir~a~~~~~------~~v-~iggt~gg~tl~~eG~q 642 (891)
T PRK09405 571 GINEAGAMASWIAAATSYSTHGEPMIPFYI-YYSMFGFQRIGDLAWAAGDQRA------RGF-LLGGTAGRTTLNGEGLQ 642 (891)
T ss_pred chhhhHHHHHHHHHHHhhhhcCCCceEEEE-ehHHhhhhhHHHHHHHHHHhcC------CCe-EEEEECccccCCCCccc
Confidence 999999999 99999998 8899999 69999 5999999999999776 355 55555544445555555
Q ss_pred C-CchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCC--CEEEeccccccccCc--ccCCCCCcccCCCce-EE
Q 018167 165 H-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPN--PVVFFEPKWLYRLSV--EEVPEDDYMLPLSEA-EV 234 (360)
Q Consensus 165 H-s~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~--P~~i~~~k~l~r~~~--~~v~~~~~~~~~Gk~-~v 234 (360)
| ..+|+++||++|||+|+.|+|+.|+..+++++++ ..+ |.|++ ++..+. +..| +++.+.+||. ++
T Consensus 643 Hqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlr----l~ne~~~~~~~p-e~~~~~igKg~y~ 717 (891)
T PRK09405 643 HEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYIT----VMNENYHQPAMP-EGAEEGILKGMYK 717 (891)
T ss_pred CCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEE----eCCCCCCCCCCC-cccccccceEEEE
Confidence 5 6999999999999999999999999999999876 445 77784 321111 1222 3467889996 99
Q ss_pred eeeCC------cEEEEEechhHHHHHHHHHHHHh-cCCCeeEEEeccccCCcHHHHHHHH---------hcCCeEEEEeC
Q 018167 235 IREGS------DITLVGWGAQLSIMEQACLDAEK-EGISCELIDLKTLIPWDKETVEASV---------RKTGRLLISHE 298 (360)
Q Consensus 235 l~~G~------dv~Iia~G~~~~~al~Aa~~L~~-~Gi~v~Vi~~~~ikP~d~~~l~~~~---------~~~~~ivvvEe 298 (360)
+++|. |++|+++|.++++|++|++.|++ +||+++|+|++|+||||.+.+.... ++++.|+++|+
T Consensus 718 Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee 797 (891)
T PRK09405 718 LETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLK 797 (891)
T ss_pred eccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhc
Confidence 99976 89999999999999999999998 6999999999999999999987766 56778899999
Q ss_pred CCcCCchH-------HHHHHHHHHhccccCCCceEEEecCCC-----CccccccccCCCCHHHHHHHHHHhhh
Q 018167 299 APVTGGFG-------AEISASILERCFLRLEAPVARVCGLDT-----PFPLVFEPFYMPTKNKILDAIKSTVN 359 (360)
Q Consensus 299 ~~~~GGlg-------s~v~~~l~~~~~~~l~~~~~~i~~~~~-----~~~~~~e~~gl~~~~~I~~~i~~~l~ 359 (360)
| .||++ ++|++.+++.. +.++.++|. |. ...+++++||+ |+++|+++++++|.
T Consensus 798 ~--~gG~~Vtv~D~~~aVae~la~~~----p~~~~~LGv-D~FG~SGt~~~L~~~fgl-da~~Iv~aal~~La 862 (891)
T PRK09405 798 G--AEGPVVAATDYMKLFAEQIRAFV----PGDYVVLGT-DGFGRSDTREALRRFFEV-DAEYVVVAALKALA 862 (891)
T ss_pred c--cCCcEEEecchHHHHHHHHHHhC----CCCEEEEec-CCCCCCCCHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 8 68888 99999998853 578888854 53 22478999999 99999999999874
No 27
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=1.8e-44 Score=379.84 Aligned_cols=293 Identities=15% Similarity=0.128 Sum_probs=235.6
Q ss_pred CCCcccHHHHHHHHHHHHHhc---CCCEEEEcCCCCCCC----ccc------------------cchhHHHHhCCCcEEe
Q 018167 36 SGKSLNLYSAINQALHIALET---DPRAYVFGEDVGFGG----VFR------------------CTTGLADRFGKSRVFN 90 (360)
Q Consensus 36 ~~~~~~~r~a~~~~L~~l~~~---~~~vv~i~~Dl~~g~----~~~------------------~~~~~~~~~gp~r~i~ 90 (360)
.++++++|.+|+++|.++++. +++||.+++|++.++ .|. .+..|+++| |+|||+
T Consensus 499 ~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~-pgR~ie 577 (896)
T PRK13012 499 GGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK-DGQILE 577 (896)
T ss_pred CCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCC-CCcEEe
Confidence 456799999999999999988 999999999987321 111 024567899 999999
Q ss_pred chhHHHHHHH--HHHHHhcC----CCeeEEEecCccc-HHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCC
Q 018167 91 TPLCEQGIVG--FAIGLAAM----GNRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGH 163 (360)
Q Consensus 91 ~GIaE~~~vg--~AaGlA~~----G~~p~~~~~f~~F-~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~ 163 (360)
+||+||+|++ +|+|+|++ |++||+. +|+.| .+|++||++++++++. .++ .++.++.+...+++|+
T Consensus 578 ~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~-tfs~F~~~R~~Dqir~a~~~~~------~~v-lig~T~gg~tlg~dG~ 649 (896)
T PRK13012 578 EGITEAGAISSWIAAATSYSVHGLPMLPFYI-YYSMFGFQRVGDLIWAAADQRA------RGF-LLGATAGRTTLGGEGL 649 (896)
T ss_pred cchhhhhhhHHHHHHHhhHHhcCCCcEEEEE-ehHHHHHHHHHHHHHHHHhccc------CCe-EEEEeCcccccCCCCC
Confidence 9999999999 99999777 6799999 69999 5999999999988655 245 5555555556677777
Q ss_pred CCC-chHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C--CCCEEEeccccccccCc--ccCCCC-CcccCCCceE
Q 018167 164 YHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D--PNPVVFFEPKWLYRLSV--EEVPED-DYMLPLSEAE 233 (360)
Q Consensus 164 ~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~--~~P~~i~~~k~l~r~~~--~~v~~~-~~~~~~Gk~~ 233 (360)
||+ .+|++++|+||||+|+.|+|+.|+..+++.+++ . ++|+|| +++|.+. |.++++ +..+..|+ +
T Consensus 650 THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YI----rL~r~~~~~p~~~~~~~~~i~kG~-y 724 (896)
T PRK13012 650 QHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYL----TVMNENYAQPALPEGAEEGILKGM-Y 724 (896)
T ss_pred CCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEE----EecCCCCCCCCCCccchhccccCc-E
Confidence 775 999999999999999999999999999998773 2 689999 6666655 344543 35667787 5
Q ss_pred Eee---eCCcEEEEEechhHHHHHHHHHHHHhc-CCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchH---
Q 018167 234 VIR---EGSDITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFG--- 306 (360)
Q Consensus 234 vl~---~G~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlg--- 306 (360)
+++ +|.|++|+++|+++++|++|++.|+++ ||+++|+|++|++|||.+.+.. |||+..||++
T Consensus 725 ~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~-----------E~hn~~gglg~~~ 793 (896)
T PRK13012 725 RLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAA-----------ERANLLGPAEEAR 793 (896)
T ss_pred EEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHH-----------HHHhhcCCCcccc
Confidence 563 467999999999999999999999999 9999999999999999997732 6666666666
Q ss_pred -H---------------------HHHHHHHHhccccCCCceEEEecCCC-----CccccccccCCCCHHHHHHHHHHhhh
Q 018167 307 -A---------------------EISASILERCFLRLEAPVARVCGLDT-----PFPLVFEPFYMPTKNKILDAIKSTVN 359 (360)
Q Consensus 307 -s---------------------~v~~~l~~~~~~~l~~~~~~i~~~~~-----~~~~~~e~~gl~~~~~I~~~i~~~l~ 359 (360)
+ +|++.+.+.. +.++.++| .|. +.++++++||+ |+++|+++++++|.
T Consensus 794 ~sy~~~~l~~~~~p~Va~~D~~~aVae~l~~~~----~~~~~~LG-vD~FG~Sg~~~~L~~~fGl-da~~Iv~aal~~La 867 (896)
T PRK13012 794 VPYVTQCLAGTRGPVVAATDYVRAVPEQIRAFV----PARYVTLG-TDGFGRSDTRAALRRFFEV-DRHSIVLAALKALA 867 (896)
T ss_pred ccHHHHhhcccCCCeEEecchHHHHHHHHHHhC----CCCeEEEe-eCCCCCCCCHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 3 6777776642 45777774 343 33578999999 99999999998864
No 28
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=7.9e-44 Score=311.75 Aligned_cols=165 Identities=58% Similarity=0.938 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCC-CCccccchhHHHHhCCC-cEEechhHHHHHHHHHHHHhcCCCeeEEEecCccc
Q 018167 44 SAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKS-RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADY 121 (360)
Q Consensus 44 ~a~~~~L~~l~~~~~~vv~i~~Dl~~-g~~~~~~~~~~~~~gp~-r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F 121 (360)
++++++|.+++++||+++++++|++. ||++..+++|+++| |+ ||||+||+||+|+|+|+|||++|++||++++|++|
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~-p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~F 79 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKF-GPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADF 79 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhC-CCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHH
Confidence 37899999999999999999999973 55666789999999 78 99999999999999999999999999999789999
Q ss_pred HHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCC
Q 018167 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDP 201 (360)
Q Consensus 122 ~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~ 201 (360)
+.|+|||||+++|+++|+++++.+. +++++++++..+.+|+||+++|+++||+||||+|++|+|+.|++.+++++++++
T Consensus 80 l~ra~dQi~~~~a~~~~~~~~~~~~-pv~i~~~~gg~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~ 158 (167)
T cd07036 80 ALPAFDQIVNEAAKLRYMSGGQFKV-PIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDD 158 (167)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccC-CEEEEEeCCCCCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCC
Confidence 9999999999999999998888888 888888777777788899999999999999999999999999999999999999
Q ss_pred CCEEEeccc
Q 018167 202 NPVVFFEPK 210 (360)
Q Consensus 202 ~P~~i~~~k 210 (360)
+|+++++||
T Consensus 159 ~P~~~~e~k 167 (167)
T cd07036 159 DPVIFLEHK 167 (167)
T ss_pred CcEEEEecC
Confidence 999999987
No 29
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.3e-41 Score=360.25 Aligned_cols=316 Identities=20% Similarity=0.273 Sum_probs=265.9
Q ss_pred hHHHHhhhcc--cccccchhhHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHhcCCCEEEEcCCCC--------------
Q 018167 5 LRRFVGSLSR--RNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-------------- 68 (360)
Q Consensus 5 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~-------------- 68 (360)
|+.+++.+.. .+|+.|+.++++++++.+.+..++.++|..|.+.++..++++|++|++.++|++
T Consensus 547 l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq 626 (924)
T PRK09404 547 LKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQ 626 (924)
T ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhcccc
Confidence 5566655554 999999999999988888886666799999999999999999999999999997
Q ss_pred -CCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCe--eEEEecCcccHH---HHHHHHHHHH-HhcccccC
Q 018167 69 -FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNR--AIAEIQFADYIF---PAFDQIVNEA-AKFRYRSG 141 (360)
Q Consensus 69 -~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~--p~~~~~f~~F~~---ra~dQi~~~~-a~~~~~~~ 141 (360)
.|+.|+.+++|.++|||+|++|++|+|.+++|++.|+|+.|.+ |++++||.+|+. .++||+.+.+ ++.+++
T Consensus 627 ~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~-- 704 (924)
T PRK09404 627 KTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRL-- 704 (924)
T ss_pred CCCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCc--
Confidence 4678888999999999999999999999999999999999996 599999999984 7799999875 665544
Q ss_pred CCccccceEEEcCCCCCCCCCCCCCchHHHHHcCC--CCcEEEeeCCHHHHHHHHHHhH-hC-CCCEEEeccccccccCc
Q 018167 142 NQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHV--PGLKVVIPRSPRQAKGLLLSCI-RD-PNPVVFFEPKWLYRLSV 217 (360)
Q Consensus 142 ~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r~i--Pn~~V~~P~d~~e~~~~l~~a~-~~-~~P~~i~~~k~l~r~~~ 217 (360)
. ++|++.|.|+.|.++.|||+..++++... |||+|+.|++|.|++++|+.++ +. ++|++|++||.|+|.+.
T Consensus 705 ----s-glv~~~p~G~~g~g~~hsS~~~E~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~ 779 (924)
T PRK09404 705 ----S-GLVMLLPHGYEGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPL 779 (924)
T ss_pred ----c-CeEEEecCcCCCCChhhhccCHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCC
Confidence 3 68889999977778888889999999655 7999999999999999999865 66 59999999999998642
Q ss_pred -----ccCCCCCcccCCCceEEeeeCCcE--EEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcC
Q 018167 218 -----EEVPEDDYMLPLSEAEVIREGSDI--TLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (360)
Q Consensus 218 -----~~v~~~~~~~~~Gk~~vl~~G~dv--~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~ 290 (360)
.+++++.+..+++++. .++++|+ +|||||.+++.++++++.+.. .+++|||+++|.|||.++|.++++++
T Consensus 780 ~~s~~~e~~~~~f~~vi~~~~-~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~~--~~v~ii~le~L~P~~~~~i~~~v~k~ 856 (924)
T PRK09404 780 AVSSLEELAEGSFQPVIGDID-ELDPKKVKRVVLCSGKVYYDLLEARRKRGI--DDVAIVRIEQLYPFPHEELAAELAKY 856 (924)
T ss_pred CCCCHHHcCCCCceeeccccc-ccCccceeEEEEEcCHHHHHHHHHHHhCCC--CCEEEEEeeeeCCCCHHHHHHHHHhc
Confidence 2344444555666655 5678899 799999999999999985533 49999999999999999999999997
Q ss_pred ---CeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCC
Q 018167 291 ---GRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLD 332 (360)
Q Consensus 291 ---~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~ 332 (360)
+++|+|+|...+.|.++.|...+.+.-. ...++..+|-..
T Consensus 857 ~~~~~~v~vqEe~~n~G~~~~~~~~~~~~~~--~~~~~~y~gR~~ 899 (924)
T PRK09404 857 PNAKEVVWCQEEPKNQGAWYFIQHHLEEVLP--EGQKLRYAGRPA 899 (924)
T ss_pred CCCCeEEEEeeCCCCCCcHHHHHHHHHHHhc--cCCeeEEECCCC
Confidence 4899998888999999999998875310 013566664433
No 30
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=3.2e-41 Score=355.72 Aligned_cols=318 Identities=21% Similarity=0.297 Sum_probs=262.1
Q ss_pred hhHHHHhhhcc--cccccchhhHHHHHhh-cCCCCCCCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCC-----------
Q 018167 4 GLRRFVGSLSR--RNLSTACANKQLIQQH-DGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGF----------- 69 (360)
Q Consensus 4 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~----------- 69 (360)
-|+.+++.+.. .+|++|+.++++++.+ ......++.++|.+|.+.++.+++++|++|++.++|++.
T Consensus 547 ~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~ 626 (929)
T TIGR00239 547 RLQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLH 626 (929)
T ss_pred HHHHHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCccccccccccc
Confidence 46777877776 8999999999999887 444544455899999999999999999999999999974
Q ss_pred ----CCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCee--EEEecCcccHH---HHHHHHHHH-HHhcccc
Q 018167 70 ----GGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRA--IAEIQFADYIF---PAFDQIVNE-AAKFRYR 139 (360)
Q Consensus 70 ----g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p--~~~~~f~~F~~---ra~dQi~~~-~a~~~~~ 139 (360)
|+.|+.+++|.++||++|++|++|+|.+++|++.|+|+.|.+| ++++||.+|+. .++||+.+. .++.+++
T Consensus 627 dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~ 706 (929)
T TIGR00239 627 DQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQM 706 (929)
T ss_pred ccccCceeecccchhhhcCCeeEEcCCccHHHHHHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCc
Confidence 4455789999999999999999999999999999999999777 49999999984 779999987 5666654
Q ss_pred cCCCccccceEEEcCCCCCCCCCCCCCchHHHHH--cCCCCcEEEeeCCHHHHHHHHH-HhHhC-CCCEEEecccccccc
Q 018167 140 SGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFF--CHVPGLKVVIPRSPRQAKGLLL-SCIRD-PNPVVFFEPKWLYRL 215 (360)
Q Consensus 140 ~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~--r~iPn~~V~~P~d~~e~~~~l~-~a~~~-~~P~~i~~~k~l~r~ 215 (360)
+ ++|++.|.|+.|.++.|||+..+++| .+.|||+|+.|++|.|++++|+ ++++. ++|+++++||.|+|.
T Consensus 707 s-------glv~~~p~G~~g~g~~hsS~~~E~~lql~~~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~ 779 (929)
T TIGR00239 707 S-------GLVMLLPHGYEGQGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRH 779 (929)
T ss_pred c-------CeEEEecCcCCCCCchhhccCHHHHHHHhCCCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcC
Confidence 3 68889999988888889999999999 8999999999999999999999 69986 999999999999986
Q ss_pred Cc-----ccCCCCCcccCCCceE-----EeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHH
Q 018167 216 SV-----EEVPEDDYMLPLSEAE-----VIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEA 285 (360)
Q Consensus 216 ~~-----~~v~~~~~~~~~Gk~~-----vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~ 285 (360)
+. .+++++.+..++++.. +.+++.+.+|+++| +++.++++ ++++++|++++|||+++|.|||.++|.+
T Consensus 780 ~~a~S~~~e~~~~~f~~~i~~~~~~~~~~~~~~v~~vv~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~ 857 (929)
T TIGR00239 780 PLAVSSLEELAEGTFQPVIGEIEESGLSLDPEGVKRLVLCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKE 857 (929)
T ss_pred ccccCccccCCCCCcccccccccccccccCccCCcEEEEECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHH
Confidence 43 3566666766675421 22334455555655 67777777 6677789999999999999999999999
Q ss_pred HHhcCC---eEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCC
Q 018167 286 SVRKTG---RLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLD 332 (360)
Q Consensus 286 ~~~~~~---~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~ 332 (360)
++++|. ++|++.|...+.|-++.|...|.+.-. ...++..+|-+.
T Consensus 858 sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~~l~--~~~~l~y~gR~~ 905 (929)
T TIGR00239 858 VLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLREVIP--EGVSVRYAGRPA 905 (929)
T ss_pred HHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHHHhc--cCCceEEeCCCC
Confidence 999996 799998888899999999998876310 013566664333
No 31
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-41 Score=334.81 Aligned_cols=299 Identities=17% Similarity=0.202 Sum_probs=250.4
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC--ccccchhHH-HHhCCCcEEechhHHHHHHHHHHHHhcCC-Cee
Q 018167 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGG--VFRCTTGLA-DRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRA 112 (360)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~--~~~~~~~~~-~~~gp~r~i~~GIaE~~~vg~AaGlA~~G-~~p 112 (360)
+..+++|.+++++|..+.+..|+++..++|++.+. ..+....|. +.| +.|+|.+||+|++|.+++.|||++| ++|
T Consensus 351 ~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~-~gr~i~~GVREf~M~AimNGialhGg~~p 429 (663)
T COG0021 351 GKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENY-AGRYIHFGVREFAMAAIMNGIALHGGFIP 429 (663)
T ss_pred ccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCC-CCCeeEEeeHHHHHHHHHHhHHHhcCcee
Confidence 34589999999999999999999999999998332 112233454 677 7999999999999999999999985 699
Q ss_pred EEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHcCCCCcEEEeeCCHHHHH
Q 018167 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAK 191 (360)
Q Consensus 113 ~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~ 191 (360)
|.. ||..|+.++..++|. .|+|+ +|+ .+|++|.+...|+||+||+ +|+++.+|+|||+.|+.|||+.|+.
T Consensus 430 ygg-TFlvFsdY~r~AiRl-aALm~------l~~-~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~ 500 (663)
T COG0021 430 YGG-TFLVFSDYARPAVRL-AALMG------LPV-IYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETA 500 (663)
T ss_pred ecc-eehhhHhhhhHHHHH-HHhcC------CCe-EEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHH
Confidence 999 699999999999996 68777 467 8999999999999999997 9999999999999999999999999
Q ss_pred HHHHHhHhC-CCCEEEeccccccccCcccCCCCCcccCCCceEEeee----CCcEEEEEechhHHHHHHHHHHHHhcCCC
Q 018167 192 GLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIRE----GSDITLVGWGAQLSIMEQACLDAEKEGIS 266 (360)
Q Consensus 192 ~~l~~a~~~-~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~----G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~ 266 (360)
.+|+.|++. ++|+++ .+.|+..|.++..+.......++++++ +.|++||++|+.|..|++|++.|+++|++
T Consensus 501 ~aw~~Al~~~~gPt~L----iltRQnlp~l~~t~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~~~~ 576 (663)
T COG0021 501 AAWKYALERKDGPTAL----ILTRQNLPVLERTDLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAEGIK 576 (663)
T ss_pred HHHHHHHhcCCCCeEE----EEecCCCCccCCCccccccCccEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhcCCc
Confidence 999999995 999999 889999998877654445556788887 47999999999999999999999988999
Q ss_pred eeEEEeccccCCcHHH--HHHHHhcC--CeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCcccccccc
Q 018167 267 CELIDLKTLIPWDKET--VEASVRKT--GRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPF 342 (360)
Q Consensus 267 v~Vi~~~~ikP~d~~~--l~~~~~~~--~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~~~~e~~ 342 (360)
++||+++|...||.+. .++++... .+.|.+|-. ...||...+-. . +....+.++ |.+.|.+.++++|
T Consensus 577 vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~-~~~~W~ky~g~----~---g~~ig~~~F-G~Sap~~~l~~~f 647 (663)
T COG0021 577 VRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAG-SALGWYKYVGL----D---GAVIGMDSF-GASAPGDELFKEF 647 (663)
T ss_pred eEEEeccchHHHHcCCHHHHHhhccCCccceEEEEec-cccchhhhcCC----C---CcEEeeccC-cCCCCHHHHHHHh
Confidence 9999999999999854 44555443 235778876 46778775421 1 112345566 6777888999999
Q ss_pred CCCCHHHHHHHHHHhhh
Q 018167 343 YMPTKNKILDAIKSTVN 359 (360)
Q Consensus 343 gl~~~~~I~~~i~~~l~ 359 (360)
|+ |+++|+++++++++
T Consensus 648 Gf-t~e~vv~~~~~~l~ 663 (663)
T COG0021 648 GF-TVENVVAKAKSLLN 663 (663)
T ss_pred CC-CHHHHHHHHHHhhC
Confidence 99 99999999999874
No 32
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=1.5e-38 Score=276.20 Aligned_cols=155 Identities=25% Similarity=0.369 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecCcccHH
Q 018167 44 SAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIF 123 (360)
Q Consensus 44 ~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F~~ 123 (360)
++++++|.+++++||+++++++|++.++ .+++|.++| |+||+|+||+||+|+|+|+|||+.|++||+++ |++|++
T Consensus 1 ~~~~~~l~~~~~~~~~~v~~~~Dl~~~~---~~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~-~~~f~~ 75 (156)
T cd07033 1 KAFGEALLELAKKDPRIVALSADLGGST---GLDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVST-FSFFLQ 75 (156)
T ss_pred ChHHHHHHHHHhhCCCEEEEECCCCCCC---CcHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEEEE-CHHHHH
Confidence 3689999999999999999999998433 579999999 99999999999999999999999999999995 788899
Q ss_pred HHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCC-CchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCC
Q 018167 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPN 202 (360)
Q Consensus 124 ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~H-s~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~ 202 (360)
|++||||+++|+++ +|+ .+++.+.+...+.+|+|| +++|++++|++||++|++|+|+.|++.+++++++.++
T Consensus 76 ra~dqi~~~~a~~~------~pv-~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~~~ 148 (156)
T cd07033 76 RAYDQIRHDVALQN------LPV-KFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEYDG 148 (156)
T ss_pred HHHHHHHHHHhccC------CCe-EEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhCCC
Confidence 99999999999887 466 565555445555677777 6999999999999999999999999999999999999
Q ss_pred CEEEeccc
Q 018167 203 PVVFFEPK 210 (360)
Q Consensus 203 P~~i~~~k 210 (360)
|+|||++|
T Consensus 149 P~~irl~~ 156 (156)
T cd07033 149 PVYIRLPR 156 (156)
T ss_pred CEEEEeeC
Confidence 99997664
No 33
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=2.1e-38 Score=281.10 Aligned_cols=168 Identities=42% Similarity=0.626 Sum_probs=137.2
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCC--CeeEEE
Q 018167 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG--NRAIAE 115 (360)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G--~~p~~~ 115 (360)
++++||++++++|.+++++||+|+++++|++ ++++..+.++...+||+||+|+||+||+|+|+|+|||+.| ++||+.
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~-~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~ 79 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLG-GGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVES 79 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTH-HHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEE
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcC-cchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEe
Confidence 4689999999999999999999999999998 3344445566667778899999999999999999999999 555555
Q ss_pred ecCcccHH----HHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCC-CCCCCCchHHHHHcCCCCcEEEeeCCHHHH
Q 018167 116 IQFADYIF----PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH-GGHYHSQSPEAFFCHVPGLKVVIPRSPRQA 190 (360)
Q Consensus 116 ~~f~~F~~----ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~-~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~ 190 (360)
+|++|+. |+++|+++++++++ +|+ + ++.+.+...+. |++||+++|+++||++|||+|++|+|+.|+
T Consensus 80 -~f~~F~~~~q~r~~~~~~~~~~~~~------~~v-~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~ 150 (178)
T PF02779_consen 80 -TFADFLTPAQIRAFDQIRNDMAYGQ------LPV-P-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEA 150 (178)
T ss_dssp -EEGGGGGGGHHHHHHHHHHHHHHHT------S-E-E-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHH
T ss_pred -eccccccccchhhhhhhhhhhhccc------cee-c-ceeecCcccccccccccccccccccccccccccccCCCHHHH
Confidence 8999998 99999999999887 467 7 44444443444 555668999999999999999999999999
Q ss_pred HHHHHHhHh--CCCCEEEecccccccc
Q 018167 191 KGLLLSCIR--DPNPVVFFEPKWLYRL 215 (360)
Q Consensus 191 ~~~l~~a~~--~~~P~~i~~~k~l~r~ 215 (360)
+.+++++++ +++|+|||+||.+++.
T Consensus 151 ~~~l~~a~~~~~~~P~~ir~~r~~~~~ 177 (178)
T PF02779_consen 151 KGLLRAAIRRESDGPVYIREPRGLYPH 177 (178)
T ss_dssp HHHHHHHHHSSSSSEEEEEEESSEES-
T ss_pred HHHHHHHHHhCCCCeEEEEeeHHhCCC
Confidence 999999999 7899999999987653
No 34
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.98 E-value=7.9e-32 Score=236.66 Aligned_cols=155 Identities=39% Similarity=0.512 Sum_probs=130.4
Q ss_pred cHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCCccccchhHHHHhCCC-------cEEechhHHHHHHHHHHHHhcCCCee
Q 018167 41 NLYSAINQALHIALETDP-RAYVFGEDVGFGGVFRCTTGLADRFGKS-------RVFNTPLCEQGIVGFAIGLAAMGNRA 112 (360)
Q Consensus 41 ~~r~a~~~~L~~l~~~~~-~vv~i~~Dl~~g~~~~~~~~~~~~~gp~-------r~i~~GIaE~~~vg~AaGlA~~G~~p 112 (360)
++|++++++|.+++++|+ +++++++|++.++. +. ..+.| |+ ||+|+||+||+|+++|+|||++|++|
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~---~~-~~~~~-~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~p 75 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTG---LD-RGGVF-PDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRP 75 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcC---CC-cCCcc-CCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCc
Confidence 479999999999999955 99999999974321 12 24555 45 59999999999999999999999999
Q ss_pred EEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcC-CCCCCCCCC-CCCchHHHHHcCCCCcEEEeeCCHHHH
Q 018167 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAVGHGGH-YHSQSPEAFFCHVPGLKVVIPRSPRQA 190 (360)
Q Consensus 113 ~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~-~g~~g~~g~-~Hs~~d~a~~r~iPn~~V~~P~d~~e~ 190 (360)
|++ +|++|+.|++||++++++++ ++ +++++++ ++..+.+|+ ||+++|++++++|||++|++|+|+.|+
T Consensus 76 i~~-~~~~f~~~a~~~~~~~~~~~--------~~-~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~ 145 (168)
T smart00861 76 VVA-IFFTFFDRAKDQIRSDGAMG--------RV-PVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEA 145 (168)
T ss_pred EEE-eeHHHHHHHHHHHHHhCccc--------CC-CEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHH
Confidence 999 59999899999999988743 24 6777885 456676565 667999999999999999999999999
Q ss_pred HHHHHHhHhC-CCCEEEeccc
Q 018167 191 KGLLLSCIRD-PNPVVFFEPK 210 (360)
Q Consensus 191 ~~~l~~a~~~-~~P~~i~~~k 210 (360)
+.+++++++. ++|+|||.++
T Consensus 146 ~~~l~~a~~~~~~p~~i~~~~ 166 (168)
T smart00861 146 KGLLRAAIRRDDGPPVIRLER 166 (168)
T ss_pred HHHHHHHHhCCCCCEEEEecC
Confidence 9999999976 7899996553
No 35
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.91 E-value=1.2e-25 Score=187.81 Aligned_cols=120 Identities=37% Similarity=0.613 Sum_probs=110.7
Q ss_pred CceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHH
Q 018167 230 SEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEI 309 (360)
Q Consensus 230 Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v 309 (360)
||+.++++|+|++|||||++++.|++|++.|+++|++++|||++|++|||++.|.++++++++++|+|||+..||+|+.|
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCceEEEecCCCCcc----ccccccCCCCHHHH
Q 018167 310 SASILERCFLRLEAPVARVCGLDTPFP----LVFEPFYMPTKNKI 350 (360)
Q Consensus 310 ~~~l~~~~~~~l~~~~~~i~~~~~~~~----~~~e~~gl~~~~~I 350 (360)
++++.++++..+..++.+++.+|.+.+ ++++++|+ |+++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~gl-~~e~I 124 (124)
T PF02780_consen 81 AEYLAENGFNDLDAPVKRLGVPDEFIPHGRAELLEAFGL-DAESI 124 (124)
T ss_dssp HHHHHHHTTTGEEEEEEEEEE-SSSHHSSHHHHHHHTTH-SHHHH
T ss_pred HHHHHHhCCccCCCCeEEEEECCCcccCcHHHHHHHCcC-CCCcC
Confidence 999999776444578999988888776 67999999 99987
No 36
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.88 E-value=5.4e-20 Score=179.33 Aligned_cols=273 Identities=20% Similarity=0.199 Sum_probs=191.7
Q ss_pred cCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecCcccHHHHHHHHHHHHHh
Q 018167 56 TDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAK 135 (360)
Q Consensus 56 ~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F~~ra~dQi~~~~a~ 135 (360)
.+.+++..=+=...+.....+..+.+++ ...|++ .-+|..++++|.|.|.+|.|.++. |.++.+..+++.+-. ++.
T Consensus 20 ag~~~~a~YPiTPsTeI~e~la~~~~~~-~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~ta-TSg~Gl~lm~E~l~~-a~~ 95 (352)
T PRK07119 20 AGCRCYFGYPITPQSEIPEYMSRRLPEV-GGVFVQ-AESEVAAINMVYGAAATGKRVMTS-SSSPGISLKQEGISY-LAG 95 (352)
T ss_pred hCCCEEEEeCCCCchHHHHHHHHHHHHh-CCEEEe-eCcHHHHHHHHHHHHhhCCCEEee-cCcchHHHHHHHHHH-HHH
Confidence 3666665444433322221223344566 367888 789999999999999999999999 688888888998764 555
Q ss_pred cccccCCCccccceEEEcCCCCCCCCCCCC-CchHHHHHcC-----CCCcEEEeeCCHHHHHHHHHHhHh----CCCCEE
Q 018167 136 FRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCH-----VPGLKVVIPRSPRQAKGLLLSCIR----DPNPVV 205 (360)
Q Consensus 136 ~~~~~~~~~~v~~~v~~~~~g~~g~~g~~H-s~~d~a~~r~-----iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ 205 (360)
.+ +|+ .+++..+.++..+ .++ .|.|.-+.+. --++.|++|+|++|++.+...|++ ++-||+
T Consensus 96 ~e------~P~-v~v~v~R~~p~~g--~t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PVi 166 (352)
T PRK07119 96 AE------LPC-VIVNIMRGGPGLG--NIQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVM 166 (352)
T ss_pred cc------CCE-EEEEeccCCCCCC--CCcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 55 466 5666666654433 245 4888866531 224889999999999999999887 478999
Q ss_pred EeccccccccCcc-cCCC--------CCcccCCCce--------------------------------------EEe-ee
Q 018167 206 FFEPKWLYRLSVE-EVPE--------DDYMLPLSEA--------------------------------------EVI-RE 237 (360)
Q Consensus 206 i~~~k~l~r~~~~-~v~~--------~~~~~~~Gk~--------------------------------------~vl-~~ 237 (360)
++.+.++.....+ .+++ .++.+ .|.. +.. .+
T Consensus 167 v~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~ 245 (352)
T PRK07119 167 VLGDGVLGQMMEPVEFPPRKKRPLPPKDWAV-TGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTE 245 (352)
T ss_pred EEcchhhhCceeeecCCchhhcccCCCCCcc-CCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCC
Confidence 9987765422111 0110 01100 1100 111 14
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhc
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERC 317 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~ 317 (360)
+.|++||+||+++..+++|++.|+++|++++|+++++++|||.+.|.+.++++++|+|+|++ .|.+..+|...+..
T Consensus 246 dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n--~g~l~~ei~~~~~~-- 321 (352)
T PRK07119 246 DAELVLVAYGTSARIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMS--MGQMVEDVRLAVNG-- 321 (352)
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCC--ccHHHHHHHHHhCC--
Confidence 68999999999999999999999999999999999999999999999999999999999997 46688877754421
Q ss_pred cccCCCceEEEecCCCCccccccccCCCCHHHHHHHHHHhhh
Q 018167 318 FLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKSTVN 359 (360)
Q Consensus 318 ~~~l~~~~~~i~~~~~~~~~~~e~~gl~~~~~I~~~i~~~l~ 359 (360)
..++..++..++. .|+++.|.+.++++++
T Consensus 322 ----~~~~~~i~k~~G~---------~~~~~~i~~~~~~~~~ 350 (352)
T PRK07119 322 ----KKPVEFYGRMGGM---------VPTPEEILEKIKEILG 350 (352)
T ss_pred ----CCceeEEeccCCE---------eCCHHHHHHHHHHHhc
Confidence 1234444433332 2389999999998764
No 37
>PRK05261 putative phosphoketolase; Provisional
Probab=99.87 E-value=8.9e-21 Score=197.98 Aligned_cols=221 Identities=14% Similarity=0.118 Sum_probs=171.8
Q ss_pred CcccHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCCccccchhHH----------------HHhCCCcEEechhHHHHHHH
Q 018167 38 KSLNLYSAINQALHIALETDPR-AYVFGEDVGFGGVFRCTTGLA----------------DRFGKSRVFNTPLCEQGIVG 100 (360)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~-vv~i~~Dl~~g~~~~~~~~~~----------------~~~gp~r~i~~GIaE~~~vg 100 (360)
...+||. +++.|.++++.+|+ +++.++|...+. +.-..|. ... ..|+++ |++|.+|.|
T Consensus 389 ~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SN--rl~~~f~~t~r~~~~~~~~~d~~~~~-~Grvie-~LsEh~~~g 463 (785)
T PRK05261 389 MAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASN--RLQAVFEVTDRQWMAEILPYDEHLAP-DGRVME-VLSEHLCEG 463 (785)
T ss_pred ccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhh--ccHhHHhhhccccccccCCcccccCC-CCCeee-eecHHHHHH
Confidence 4568888 99999999999999 899999976321 1111221 122 379999 999999999
Q ss_pred HHHHHhcCCCeeEEEecCcccH---HHHHHHH----HHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC----chH
Q 018167 101 FAIGLAAMGNRAIAEIQFADYI---FPAFDQI----VNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS----QSP 169 (360)
Q Consensus 101 ~AaGlA~~G~~p~~~~~f~~F~---~ra~dQi----~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs----~~d 169 (360)
++.|+++.|.++++. +|-.|+ ..++.|+ |.. ....|+... ..+ .+|+++.+-..+++|.||+ ++.
T Consensus 464 ~~~Gy~LtG~~~~~~-sYeaF~~ivd~m~~q~~kw~r~~-~~~~wr~~~-~sL-n~l~Ts~~~~qghNG~THQ~Pg~ie~ 539 (785)
T PRK05261 464 WLEGYLLTGRHGFFS-SYEAFIHIVDSMFNQHAKWLKVA-REIPWRKPI-PSL-NYLLTSHVWRQDHNGFSHQDPGFIDH 539 (785)
T ss_pred HHHHHHhcCCCccee-cHHHHHHHHHHHHHHHHHHHHHH-hhcccCCCC-cce-eEEeecceeecCCCCCCCCCchHHHH
Confidence 999999999999999 699997 7788888 653 334444211 123 5666776777889999985 466
Q ss_pred HHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCCEEEeccccccccCcccCCCCC---cccCCCceEEee--e-----C
Q 018167 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDD---YMLPLSEAEVIR--E-----G 238 (360)
Q Consensus 170 ~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-~~P~~i~~~k~l~r~~~~~v~~~~---~~~~~Gk~~vl~--~-----G 238 (360)
++-+|+ |++.|+.|+|.+|+..+++.|++. ++|.+| .+.|++.|.....+ ..+..|. +++. + +
T Consensus 540 l~~~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~I----vlsRQ~lp~~~~~~~a~~~~~kGa-yi~~~a~~~~~~~ 613 (785)
T PRK05261 540 VANKKP-DVIRVYLPPDANTLLAVADHCLRSRNYINVI----VAGKQPRPQWLSMDEARKHCTKGL-GIWDWASNDDGEE 613 (785)
T ss_pred HHhcCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEE----EEeCCCCcccCChHHHHHhccCce-EEEEeccCCCCCC
Confidence 677788 999999999999999999999986 899999 67777777653322 2455664 4554 2 3
Q ss_pred CcEEEEEechhHHH-HHHHHHHHHhc--CCCeeEEEec
Q 018167 239 SDITLVGWGAQLSI-MEQACLDAEKE--GISCELIDLK 273 (360)
Q Consensus 239 ~dv~Iia~G~~~~~-al~Aa~~L~~~--Gi~v~Vi~~~ 273 (360)
.|++|+|+|+++.. |++|++.|+++ |++++||++.
T Consensus 614 pDvvL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~ 651 (785)
T PRK05261 614 PDVVLACAGDVPTLETLAAADLLREHFPDLKIRVVNVV 651 (785)
T ss_pred CCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEec
Confidence 59999999999998 99999999999 9999999994
No 38
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.85 E-value=7.6e-19 Score=172.62 Aligned_cols=248 Identities=17% Similarity=0.235 Sum_probs=177.8
Q ss_pred HHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCC
Q 018167 81 DRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH 160 (360)
Q Consensus 81 ~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~ 160 (360)
+++| ..|+++- +|.+++++|.|.|.+|.|.++. |.++=+....+++-.. +..+ +|+ .++...++|...+
T Consensus 45 ~~~~-~~~vq~E-~E~aA~~~a~GAs~aG~Ra~Ta-TSg~Gl~lm~E~~~~a-~~~e------~P~-Viv~~~R~gp~tg 113 (376)
T PRK08659 45 PKVG-GVFIQME-DEIASMAAVIGASWAGAKAMTA-TSGPGFSLMQENIGYA-AMTE------TPC-VIVNVQRGGPSTG 113 (376)
T ss_pred hhhC-CEEEEeC-chHHHHHHHHhHHhhCCCeEee-cCCCcHHHHHHHHHHH-HHcC------CCE-EEEEeecCCCCCC
Confidence 3453 5788888 9999999999999999999999 5777677788888643 3333 455 5666677776555
Q ss_pred CCCCCCchHHHHHc-----CCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCcc-------cCC---
Q 018167 161 GGHYHSQSPEAFFC-----HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE-------EVP--- 221 (360)
Q Consensus 161 ~g~~Hs~~d~a~~r-----~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~l~r~~~~-------~v~--- 221 (360)
..++++|.|+-..+ ..| ..|++|+|++|+..+...|++ ++.||+++.+.++.....+ .++
T Consensus 114 ~p~~~~q~D~~~~~~~~hgd~~-~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~ 192 (376)
T PRK08659 114 QPTKPAQGDMMQARWGTHGDHP-IIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIE 192 (376)
T ss_pred CCCCcCcHHHHHHhcccCCCcC-cEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccc
Confidence 55555688887666 455 469999999999999998887 4789999976654322110 000
Q ss_pred ----C------CCcc-----cC----CC--c------------------------------------------eEEee-e
Q 018167 222 ----E------DDYM-----LP----LS--E------------------------------------------AEVIR-E 237 (360)
Q Consensus 222 ----~------~~~~-----~~----~G--k------------------------------------------~~vl~-~ 237 (360)
. ..+. ++ .| . .+... +
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~ 272 (376)
T PRK08659 193 RKLPKVPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLE 272 (376)
T ss_pred cccCCCCccccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCC
Confidence 0 0000 00 01 0 00111 4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhc
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERC 317 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~ 317 (360)
+.|++||++|+++..+++|++.|+++|++++++++++++|||.+.|.+.+++.++|+|||+| .|.+..++...+..
T Consensus 273 ~ad~~iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~--~g~l~~el~~~~~~-- 348 (376)
T PRK08659 273 DAEVVVVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN--LGQMSLEVERVVNG-- 348 (376)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHHhCC--
Confidence 68999999999999999999999999999999999999999999999999999999999998 46555555544321
Q ss_pred cccCCCceEEEecCCCCccccccccCCCCHHHHHHHHHHh
Q 018167 318 FLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKST 357 (360)
Q Consensus 318 ~~~l~~~~~~i~~~~~~~~~~~e~~gl~~~~~I~~~i~~~ 357 (360)
..++..+.+.++. -+ +++.|.+.++++
T Consensus 349 ----~~~~~~i~~~~G~--------~~-~~~ei~~~~~~~ 375 (376)
T PRK08659 349 ----RAKVEGINKIGGE--------LI-TPEEILEKIKEV 375 (376)
T ss_pred ----CCCeeEEeccCCC--------cC-CHHHHHHHHHhh
Confidence 1134445444332 14 889999988764
No 39
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.84 E-value=3.2e-19 Score=185.50 Aligned_cols=246 Identities=16% Similarity=0.159 Sum_probs=175.7
Q ss_pred cEEechhHHHHHHHHHHHHhcCCCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC
Q 018167 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS 166 (360)
Q Consensus 87 r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs 166 (360)
-++.....|..++.+|.|.|.+|.|.++. |-++=+..+.|++.. +++... +. ++|+..... .+...++..
T Consensus 47 ~~~~~~~~E~~a~~~~~GAs~aG~ra~t~-ts~~Gl~~~~e~l~~-~~~~g~------~~-~iV~~~~~~-~gp~~~~~~ 116 (595)
T TIGR03336 47 VYFEWSVNEKVAVEVAAGAAWSGLRAFCT-MKHVGLNVAADPLMT-LAYTGV------KG-GLVVVVADD-PSMHSSQNE 116 (595)
T ss_pred EEEEECcCHHHHHHHHHHHHhcCcceEEE-ccCCchhhhHHHhhh-hhhhcC------cC-ceEEEEccC-CCCccchhh
Confidence 45667779999999999999999999999 577777788999875 554332 23 444333222 222233335
Q ss_pred chHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCcc-cC---CC----CCcccCCC----
Q 018167 167 QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE-EV---PE----DDYMLPLS---- 230 (360)
Q Consensus 167 ~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~l~r~~~~-~v---~~----~~~~~~~G---- 230 (360)
|.|.-+.+. .++.|+.|+|++|+..+...|++ ++-||+++...++.....+ ++ +. .++..+..
T Consensus 117 q~d~~~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 195 (595)
T TIGR03336 117 QDTRHYAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVM 195 (595)
T ss_pred HhHHHHHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCC
Confidence 888766665 37779999999999999999987 4899999987765432111 01 00 00000000
Q ss_pred ------------------------c--eE-EeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHH
Q 018167 231 ------------------------E--AE-VIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETV 283 (360)
Q Consensus 231 ------------------------k--~~-vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l 283 (360)
. .. +..+++|++||++|+++..+++|+++| |++++|++++++||||++.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i 272 (595)
T TIGR03336 196 VPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLV 272 (595)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHH
Confidence 0 01 112468999999999999999988765 99999999999999999999
Q ss_pred HHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCccccccccCCCCHHHHHHHHHHh
Q 018167 284 EASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKST 357 (360)
Q Consensus 284 ~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~~~~e~~gl~~~~~I~~~i~~~ 357 (360)
.+.++++++|+|+|||. +++++.+...+.+. ..++++++..|...+ +..+| |++.|.++++++
T Consensus 273 ~~~~~~~~~vivvEe~~--~~~~~~~~~~~~~~-----~~~v~~~G~~d~fi~---~~~~L-d~~~i~~~i~~~ 335 (595)
T TIGR03336 273 EEFLSGVEEVLVVEELE--PVVEEQVKALAGTA-----GLNIKVHGKEDGFLP---REGEL-NPDIVVNALAKF 335 (595)
T ss_pred HHHHhcCCeEEEEeCCc--cHHHHHHHHHHHhc-----CCCeEEecccCCccC---cccCc-CHHHHHHHHHHh
Confidence 99999999999999997 55555555444332 237888855554444 67889 999999999775
No 40
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.82 E-value=7.7e-18 Score=165.19 Aligned_cols=279 Identities=15% Similarity=0.096 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHH---HHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecCc
Q 018167 43 YSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLA---DRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFA 119 (360)
Q Consensus 43 r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~---~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~ 119 (360)
.+|++.+.. ..+.+++..=+=...+. ..+.+. +++| ..|+.+- +|.+++++|.|.|.+|.|.++. |.+
T Consensus 9 NeAiA~ga~---~ag~~~~a~YPITPsTe---I~e~la~~~~~~g-~~~vq~E-~E~aA~~~a~GAs~aG~Ra~ta-TSg 79 (375)
T PRK09627 9 NELVAKAAI---ECGCRFFGGYPITPSSE---IAHEMSVLLPKCG-GTFIQME-DEISGISVALGASMSGVKSMTA-SSG 79 (375)
T ss_pred HHHHHHHHH---HhCCCEEEEeCCCChhH---HHHHHHHHHHHcC-CEEEEcC-CHHHHHHHHHHHHhhCCCEEee-cCC
Confidence 344554443 34566655433333222 223333 3452 5677775 9999999999999999999999 577
Q ss_pred ccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHc-----CCCCcEEEeeCCHHHHHHHH
Q 018167 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFC-----HVPGLKVVIPRSPRQAKGLL 194 (360)
Q Consensus 120 ~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r-----~iPn~~V~~P~d~~e~~~~l 194 (360)
+=+....|++-.. +..+ +|+ .++...++|..++..+...|.|....+ ..|.+ |++|+|++|+..+.
T Consensus 80 ~G~~lm~E~~~~a-~~~e------~P~-V~~~~~R~GpstG~p~~~~q~D~~~~~~~~hgd~~~i-vl~p~~~qEa~d~t 150 (375)
T PRK09627 80 PGISLKAEQIGLG-FIAE------IPL-VIVNVMRGGPSTGLPTRVAQGDVNQAKNPTHGDFKSI-ALAPGSLEEAYTET 150 (375)
T ss_pred chHHHHhhHHHHH-Hhcc------CCE-EEEEeccCCCcCCCCCccchHHHHHHhcCCCCCcCcE-EEeCCCHHHHHHHH
Confidence 7666777887643 3333 455 455556777766555555789987777 66777 99999999999999
Q ss_pred HHhHh----CCCCEEEeccccccccCcc-------cCC---------C---CCc-ccCC---------------------
Q 018167 195 LSCIR----DPNPVVFFEPKWLYRLSVE-------EVP---------E---DDY-MLPL--------------------- 229 (360)
Q Consensus 195 ~~a~~----~~~P~~i~~~k~l~r~~~~-------~v~---------~---~~~-~~~~--------------------- 229 (360)
..|++ ++-||+++.+.++.....+ .++ . ++| .+..
T Consensus 151 ~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~ 230 (375)
T PRK09627 151 VRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTG 230 (375)
T ss_pred HHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCCcccccCCccCCCCCcccCCCCCCceEEecC
Confidence 99887 4889999977654321110 010 0 000 0000
Q ss_pred ----------------------------------CceEEee-eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc
Q 018167 230 ----------------------------------SEAEVIR-EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 230 ----------------------------------Gk~~vl~-~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
..++... ++.|++||+||++...+.+|++.|+++|++++++.+++
T Consensus 231 ~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd~~IV~~GSt~~~~keAv~~lr~~G~kvg~l~~~~ 310 (375)
T PRK09627 231 LHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILIIAYGSVSLSAKEAIKRLREEGIKVGLFRPIT 310 (375)
T ss_pred ccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCe
Confidence 0000111 34789999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCccccccccCCCCHHHHHHHH
Q 018167 275 LIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAI 354 (360)
Q Consensus 275 ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~~~~e~~gl~~~~~I~~~i 354 (360)
++|||.+.|.+.+++.++|+|+|++. |.|..+|...+.. .++..+++.++. -+ +++.|.+.+
T Consensus 311 ~~PfP~~~i~~~l~~~k~viVvE~n~--Gql~~~v~~~~~~-------~~~~~i~~~~G~--------~~-~~~~i~~~i 372 (375)
T PRK09627 311 LWPSPAKKLKEIGDKFEKILVIELNM--GQYLEEIERVMQR-------DDFHFLGKANGR--------PI-SPSEIIAKV 372 (375)
T ss_pred EECCCHHHHHHHHhcCCEEEEEcCCh--HHHHHHHHHHhCC-------CCceEEeeeCCC--------cC-CHHHHHHHH
Confidence 99999999999999999999999985 8888888766521 233344333332 14 889999988
Q ss_pred HHh
Q 018167 355 KST 357 (360)
Q Consensus 355 ~~~ 357 (360)
+++
T Consensus 373 ~~~ 375 (375)
T PRK09627 373 KEL 375 (375)
T ss_pred HhC
Confidence 864
No 41
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.78 E-value=5.2e-16 Score=154.23 Aligned_cols=288 Identities=16% Similarity=0.139 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCC-----cEEechhHHHHHHHHHHHHhcCCCeeEEEe
Q 018167 42 LYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKS-----RVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (360)
Q Consensus 42 ~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~-----r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~ 116 (360)
=.+|++.+.. ..+.+++..=+=...+. ..+.+.+.. |+ .|+++= +|.+++++|.|.|.+|.|.++.
T Consensus 15 GNeAiA~ga~---~Ag~~~~a~YPITPsTe---I~e~la~~~-~~g~~~~~~vq~E-~E~~A~~~~~GAs~aGaRa~Ta- 85 (407)
T PRK09622 15 GNTAASNALR---QAQIDVVAAYPITPSTP---IVQNYGSFK-ANGYVDGEFVMVE-SEHAAMSACVGAAAAGGRVATA- 85 (407)
T ss_pred hHHHHHHHHH---HhCCCEEEEECCCCccH---HHHHHHHHh-hCCCcCcEEEeec-cHHHHHHHHHHHHhhCcCEEee-
Confidence 3455555543 24666665544433221 234455443 43 477765 9999999999999999999999
Q ss_pred cCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCC-CchHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 018167 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (360)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~H-s~~d~a~~r~iPn~~V~~P~d~~e~~~~l~ 195 (360)
|-++=+..+.|.|-. ++..+ +|+ .++...++++.+ -+++ .+.|.-..|. .++.+++|+|++|+..+..
T Consensus 86 TS~~Gl~lm~E~l~~-aa~~~------~P~-V~~~~~R~~~~~--~~i~~d~~D~~~~r~-~g~ivl~p~s~QEa~d~~~ 154 (407)
T PRK09622 86 TSSQGLALMVEVLYQ-ASGMR------LPI-VLNLVNRALAAP--LNVNGDHSDMYLSRD-SGWISLCTCNPQEAYDFTL 154 (407)
T ss_pred cCcchHHHHhhHHHH-HHHhh------CCE-EEEEeccccCCC--cCCCchHHHHHHHhc-CCeEEEeCCCHHHHHHHHH
Confidence 577767788888874 56555 455 455556666542 3445 4778766664 5699999999999999999
Q ss_pred HhHhC------CCCEEEeccccc-cc--cCccc-----C----CC-CCc--------c--cC------------------
Q 018167 196 SCIRD------PNPVVFFEPKWL-YR--LSVEE-----V----PE-DDY--------M--LP------------------ 228 (360)
Q Consensus 196 ~a~~~------~~P~~i~~~k~l-~r--~~~~~-----v----~~-~~~--------~--~~------------------ 228 (360)
.|++. ..|++++.+..+ .. ...+. + ++ ..+ + ..
T Consensus 155 ~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 234 (407)
T PRK09622 155 MAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGAQTEEDWHFEHKAQLHHA 234 (407)
T ss_pred HHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCCccCCCCCCCCeeEEechhcchh
Confidence 88873 689999977663 21 11100 0 00 000 0 00
Q ss_pred ------------------CC----ceEEe-eeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHH
Q 018167 229 ------------------LS----EAEVI-REGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEA 285 (360)
Q Consensus 229 ------------------~G----k~~vl-~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~ 285 (360)
.| ..+.. .++.|++||++|+++..+++|++.|+++|+++++|++++++|||.+.|.+
T Consensus 235 ~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~ 314 (407)
T PRK09622 235 LMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYERLGQ 314 (407)
T ss_pred hhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHHHHH
Confidence 00 00000 13678999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccC-CCce-E-EEecCCCCccccccccCCCCHHHHHHHHHHhh
Q 018167 286 SVRKTGRLLISHEAPVTGGFGAEISASILERCFLRL-EAPV-A-RVCGLDTPFPLVFEPFYMPTKNKILDAIKSTV 358 (360)
Q Consensus 286 ~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l-~~~~-~-~i~~~~~~~~~~~e~~gl~~~~~I~~~i~~~l 358 (360)
.++++++|+|+|++...||+|+.+.+.+..-..... ..++ . .+.+... . .+++++|.+.++++.
T Consensus 315 ~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~al~~~~~~~~~~v~~~~~g~gG--------~-~~t~~~i~~~~~~l~ 381 (407)
T PRK09622 315 ALKNLKALAILDRSSPAGAMGALFNEVTSAVYQTQGTKHPVVSNYIYGLGG--------R-DMTIAHLCEIFEELN 381 (407)
T ss_pred HHhcCCEEEEEeCCCCCCCccHHHHHHHHHHhccCcCCCceEeeeEECCCC--------C-CCCHHHHHHHHHHHH
Confidence 999999999999999999999977776654211000 0122 1 1112211 1 348899988887754
No 42
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.76 E-value=3e-17 Score=164.63 Aligned_cols=303 Identities=19% Similarity=0.236 Sum_probs=231.8
Q ss_pred chhHHHHhhhcc--cccccchhhHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCcccc-----
Q 018167 3 SGLRRFVGSLSR--RNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRC----- 75 (360)
Q Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~----- 75 (360)
..|+++++.+|+ +||..|..++|+++++.+.+.+ +.+.|.-+-+-++..|+++.-.|.+-++|+..|+ |..
T Consensus 611 e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~-~~iDwal~EalAFgsLl~EG~hVRlSGQDVERGT-FShRH~VL 688 (1017)
T KOG0450|consen 611 EILKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKS-EGVDWALAEALAFGSLLKEGIHVRLSGQDVERGT-FSHRHHVL 688 (1017)
T ss_pred HHHHHHHHhhccCCcccchhhhHHHHHHHHHHhhhh-cccchHHHHHHHHHHHHhcCceEEeecccccccc-cccchhhh
Confidence 468999999999 9999999999999999998877 7799999988999999999999999999999875 321
Q ss_pred ------------chhHHHHhCCCcEEechhHHHHHHHHHHHHhcC--CCeeEEEecCcccH---HHHHHHHHHHHHhccc
Q 018167 76 ------------TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM--GNRAIAEIQFADYI---FPAFDQIVNEAAKFRY 138 (360)
Q Consensus 76 ------------~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~--G~~p~~~~~f~~F~---~ra~dQi~~~~a~~~~ 138 (360)
+..+.....|=-+-|..++|-+.+|+-.|.|+. ...++++.+|.+|. |..+||.+ ..+..+|
T Consensus 689 HDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFI-ssGqaKW 767 (1017)
T KOG0450|consen 689 HDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEAQFGDFANTAQCIIDQFI-SSGQAKW 767 (1017)
T ss_pred cccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceEEeehhhccccccchhhHHhHh-ccchhhh
Confidence 222332333456789999999999999999998 57889999999996 88999988 4566676
Q ss_pred ccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHc-------CCC-------------CcEEEeeCCHHHHHHHHHHhH
Q 018167 139 RSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFC-------HVP-------------GLKVVIPRSPRQAKGLLLSCI 198 (360)
Q Consensus 139 ~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r-------~iP-------------n~~V~~P~d~~e~~~~l~~a~ 198 (360)
-- .. ++|...|.|+.|.|+.|.|-..+.++. -+| |++|+.+++|..+..+|+.-+
T Consensus 768 ~r----qs-GlVllLPHGyeG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi 842 (1017)
T KOG0450|consen 768 VR----QS-GLVLLLPHGYEGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQI 842 (1017)
T ss_pred hh----hc-CeEEEccCCcCCCCcccccccHHHHHHhccCCCccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHh
Confidence 42 33 688888999877654444555555542 233 899999999999999999887
Q ss_pred hC--CCCEEEeccccccccCcccCC----CCCccc-----CCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCe
Q 018167 199 RD--PNPVVFFEPKWLYRLSVEEVP----EDDYML-----PLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISC 267 (360)
Q Consensus 199 ~~--~~P~~i~~~k~l~r~~~~~v~----~~~~~~-----~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v 267 (360)
.. ++|.+|+.||.|.|.+...-+ ++...| +-|++..-.++-+-+|+++|..++..-++.+....+ -++
T Consensus 843 ~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~~-~~v 921 (1017)
T KOG0450|consen 843 HRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVGLE-GDV 921 (1017)
T ss_pred hhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhceEEEEecceEehhhhHHHHhcCcc-cce
Confidence 64 899999999999987643211 011111 134443334566788999999877766665554322 389
Q ss_pred eEEEeccccCCcHHHHHHHHhcCC--eEEEE-eCCCcCCchHHHHHHHHHH
Q 018167 268 ELIDLKTLIPWDKETVEASVRKTG--RLLIS-HEAPVTGGFGAEISASILE 315 (360)
Q Consensus 268 ~Vi~~~~ikP~d~~~l~~~~~~~~--~ivvv-Ee~~~~GGlgs~v~~~l~~ 315 (360)
.+..+..|.||+.+.+++.++++. -|++. ||| ..-|-++.+...+..
T Consensus 922 Ai~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~-~NmG~w~Yv~PRl~T 971 (1017)
T KOG0450|consen 922 AITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEH-KNMGAWDYVEPRLRT 971 (1017)
T ss_pred eEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhh-cccCchhhcchHHHH
Confidence 999999999999999999999885 56777 666 455566777776654
No 43
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.72 E-value=3.1e-15 Score=147.46 Aligned_cols=209 Identities=16% Similarity=0.145 Sum_probs=153.3
Q ss_pred hhHHHHHHHHHHHHhcCCCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHHH
Q 018167 92 PLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEA 171 (360)
Q Consensus 92 GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a 171 (360)
.=+|.+++++|.|.|.+|.|.++. |.++=+..+.|.|-. ++..+ +|+ .++...++++ +...++..|.|+-
T Consensus 55 ~E~E~aA~~~aiGAs~aGaRa~Ta-TSg~Gl~lm~E~l~~-aa~~~------lPi-Vi~~~~R~~p-~~~~~~~~q~D~~ 124 (390)
T PRK08366 55 VESEHSAMAACIGASAAGARAFTA-TSAQGLALMHEMLHW-AAGAR------LPI-VMVDVNRAMA-PPWSVWDDQTDSL 124 (390)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEee-eCcccHHHHhhHHHH-HHhcC------CCE-EEEEeccCCC-CCCCCcchhhHHH
Confidence 359999999999999999999999 577767788898874 56555 455 4555567776 3333334588887
Q ss_pred HHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecccc-ccccCc----cc-------CCC--C-------Ccc
Q 018167 172 FFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKW-LYRLSV----EE-------VPE--D-------DYM 226 (360)
Q Consensus 172 ~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~-l~r~~~----~~-------v~~--~-------~~~ 226 (360)
..+.- ++.+++|+|++|+..+...|++ +.-|++++.+.- +..... ++ ++. . +.+
T Consensus 125 ~~~d~-g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p 203 (390)
T PRK08366 125 AQRDT-GWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNP 203 (390)
T ss_pred HHhhc-CEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCC
Confidence 76664 7789999999999999998887 489999986542 110000 00 000 0 000
Q ss_pred c----------------C----------------------CCceEE--ee----eCCcEEEEEechhHHHHHHHHHHHHh
Q 018167 227 L----------------P----------------------LSEAEV--IR----EGSDITLVGWGAQLSIMEQACLDAEK 262 (360)
Q Consensus 227 ~----------------~----------------------~Gk~~v--l~----~G~dv~Iia~G~~~~~al~Aa~~L~~ 262 (360)
. . +|+.+. .. ++.|++||++|+....+.+|++.|++
T Consensus 204 ~s~~~~~~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~ 283 (390)
T PRK08366 204 ISVGALATPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRK 283 (390)
T ss_pred cccccCCCCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHh
Confidence 0 0 111110 11 35789999999999999999999999
Q ss_pred cCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHH
Q 018167 263 EGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISA 311 (360)
Q Consensus 263 ~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~ 311 (360)
+|++++++.+++++|||.+.|.+.+++.++|+|+|++...|.+|..+.+
T Consensus 284 ~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~l~~e 332 (390)
T PRK08366 284 EGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGILFTE 332 (390)
T ss_pred cCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccHHHHH
Confidence 9999999999999999999999999999999999998665775544333
No 44
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.72 E-value=7.3e-16 Score=160.84 Aligned_cols=314 Identities=17% Similarity=0.199 Sum_probs=234.1
Q ss_pred hhHHHHhhhcc--cccccchhhHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccc-------
Q 018167 4 GLRRFVGSLSR--RNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFR------- 74 (360)
Q Consensus 4 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~------- 74 (360)
-|+++++..-. +||+.||.+++.++.+..-..+ ..++|.-+---++-.|+.+...|.+.++|...|+ |.
T Consensus 850 ~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~-g~iDWa~gEllAfGsLl~eG~~VRL~GQDsrRGT-F~QRHavl~ 927 (1228)
T PRK12270 850 VLERIGDAHVNLPEGFTVHPKLKPLLEKRREMARE-GGIDWAFGELLAFGSLLLEGTPVRLSGQDSRRGT-FSQRHAVLI 927 (1228)
T ss_pred HHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhcCceeeeeccccCCcc-eeeeeEEEe
Confidence 46777776665 9999999999999998887665 4688987777788899999999999999987765 21
Q ss_pred ---------cchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCC--CeeEEEecCcccH---HHHHHHHHHHHHhccccc
Q 018167 75 ---------CTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYI---FPAFDQIVNEAAKFRYRS 140 (360)
Q Consensus 75 ---------~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G--~~p~~~~~f~~F~---~ra~dQi~~~~a~~~~~~ 140 (360)
.+..|.+..|+--+.|..++|-+.+|+-.|.+.+. ..++++.||.+|. |...|+.+ ..+.++|..
T Consensus 928 D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefI-ss~e~KWgQ 1006 (1228)
T PRK12270 928 DRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFI-SSGEAKWGQ 1006 (1228)
T ss_pred cCCCCcccCcHhhcCCCcceEEEecchhhHHHhhccceeeecCCCcceeeehhhhcccccchHHHHHHHH-hhhHhhhcc
Confidence 13345444445567899999999999999999984 6788888999997 88999988 568888852
Q ss_pred CCCccccceEEEcCCCCCCCCCCCCC--chHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH-hC-CCCEEEeccccccccC
Q 018167 141 GNQFNCGGLTVRAPYGAVGHGGHYHS--QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCI-RD-PNPVVFFEPKWLYRLS 216 (360)
Q Consensus 141 ~~~~~v~~~v~~~~~g~~g~~g~~Hs--~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~-~~-~~P~~i~~~k~l~r~~ 216 (360)
.. .+|...|.|+-|.|+-|.| +|=.-.|++=.||+|..|++|...+++|++-. .. ..|.+++.||.|.|.+
T Consensus 1007 ----~S-~vvlLLPHGyEGQGPdHSSaRiERfLqlcAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~K 1081 (1228)
T PRK12270 1007 ----RS-GVVLLLPHGYEGQGPDHSSARIERFLQLCAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLK 1081 (1228)
T ss_pred ----cc-ceEEEccCCcCCCCCCcchHHHHHHHHhhccCCeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcch
Confidence 33 6788889998776544445 45555567889999999999999999999644 33 8999999999999875
Q ss_pred cccCCCCCcccCCCceEEe-------ee-CCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHh
Q 018167 217 VEEVPEDDYMLPLSEAEVI-------RE-GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR 288 (360)
Q Consensus 217 ~~~v~~~~~~~~~Gk~~vl-------~~-G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~ 288 (360)
...-+. .+|.-|+.+-+ .. .-+-+|+++|..++..++..+. ...-++.||.+..|.|||.+.|.+.+.
T Consensus 1082 aA~S~v--edFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvYYdL~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~ 1157 (1228)
T PRK12270 1082 AAVSDV--EDFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLYYDLAARREK--DGRDDTAIVRVEQLYPLPRAELREALA 1157 (1228)
T ss_pred hhcCCH--HHhccCCceecCCCCCCCCccceeEEEEEcchhHHHHHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHH
Confidence 432111 12223333321 11 1356789999999887765443 223579999999999999999999998
Q ss_pred cCC---eEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecC
Q 018167 289 KTG---RLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGL 331 (360)
Q Consensus 289 ~~~---~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~ 331 (360)
++. .+++|.|...+-|-+..++..|.+.- . -..++++++-.
T Consensus 1158 ~ypna~e~~wvQeEP~NqGaw~f~~~~l~~~l-~-~~~~lr~VsRp 1201 (1228)
T PRK12270 1158 RYPNATEVVWVQEEPANQGAWPFMALNLPELL-P-DGRRLRRVSRP 1201 (1228)
T ss_pred hCCCcceeEEeccCcccCCCchhhhhhhHhhc-c-CCCCceEecCC
Confidence 874 46888655566677788887776631 0 13567777433
No 45
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.71 E-value=2.7e-15 Score=154.88 Aligned_cols=217 Identities=20% Similarity=0.253 Sum_probs=160.3
Q ss_pred cEEechhHHHHHHHHHHHHhcCCCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC
Q 018167 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS 166 (360)
Q Consensus 87 r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs 166 (360)
-.+-..-+|.+++++|.|.|.+|.|.++. |.++=+..+.|.+- -++..+ +|+ .++...++|...+..+++.
T Consensus 238 ~~~~q~E~E~aA~~~a~GAs~aG~Ra~ta-TSg~Gl~lm~E~l~-~a~~~~------~P~-Vi~~~~R~gpstg~~t~~e 308 (562)
T TIGR03710 238 VVVVQAEDEIAAINMAIGASYAGARAMTA-TSGPGFALMTEALG-LAGMTE------TPL-VIVDVQRGGPSTGLPTKTE 308 (562)
T ss_pred cEEEeeccHHHHHHHHHhHHhcCCceeec-CCCCChhHhHHHHh-HHHhcc------CCE-EEEEcccCCCCCCCCCCcc
Confidence 44444569999999999999999999999 57776667788884 344444 466 5666677776655555556
Q ss_pred chHHHHHcCCC----CcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCcc-------cCC--------C-
Q 018167 167 QSPEAFFCHVP----GLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE-------EVP--------E- 222 (360)
Q Consensus 167 ~~d~a~~r~iP----n~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~l~r~~~~-------~v~--------~- 222 (360)
|.|.-+.+.-- ++.|++|+|++|+..+...|++ +..||+++.+..+.....+ .++ .
T Consensus 309 q~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~ 388 (562)
T TIGR03710 309 QSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEP 388 (562)
T ss_pred HHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccC
Confidence 99987776432 3789999999999999998886 4899999976654321100 000 0
Q ss_pred -CCc-----------cc-CCCc---------------------------------------------eEEee-eCCcEEE
Q 018167 223 -DDY-----------ML-PLSE---------------------------------------------AEVIR-EGSDITL 243 (360)
Q Consensus 223 -~~~-----------~~-~~Gk---------------------------------------------~~vl~-~G~dv~I 243 (360)
..+ .. ..|. .+... ++.|++|
T Consensus 389 ~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~i 468 (562)
T TIGR03710 389 EEEYKRYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLV 468 (562)
T ss_pred CCCCCCCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEE
Confidence 000 00 0110 00111 2468999
Q ss_pred EEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHH
Q 018167 244 VGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (360)
Q Consensus 244 ia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l 313 (360)
|+||++...+.+|++.|+++|++++++.+++++|||.+.|.+.+++.++|+|+|++. .|.|..+|...+
T Consensus 469 v~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~-~Gql~~~v~~~~ 537 (562)
T TIGR03710 469 IGWGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNA-TGQLAKLLRAET 537 (562)
T ss_pred EEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccCh-hhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999974 488888877655
No 46
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.66 E-value=7.8e-14 Score=137.81 Aligned_cols=285 Identities=14% Similarity=0.110 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCC-----CcEEechhHHHHHHHHHHHHhcCCCeeEEEec
Q 018167 43 YSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGK-----SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (360)
Q Consensus 43 r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp-----~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~ 117 (360)
.+|++.+.. ..+.+++..=+=...+. ..+.+.+.. + -.|+.+ =+|.+++++|.|.|.+|.|.++. |
T Consensus 10 NeAvA~aa~---~Ag~~v~a~YPITPsTe---i~e~la~~~-~~g~~~~~~v~~-EsE~aA~~~~~GAs~aGaRa~Ta-T 80 (394)
T PRK08367 10 NEAAAWAAK---LAKPKVIAAFPITPSTL---VPEKISEFV-ANGELDAEFIKV-ESEHSAISACVGASAAGVRTFTA-T 80 (394)
T ss_pred HHHHHHHHH---HhCCCEEEEECCCCccH---HHHHHHHHh-hcCCcCeEEEEe-CCHHHHHHHHHHHHhhCCCeEee-e
Confidence 445554443 24666665433333221 233444432 2 335544 59999999999999999999999 5
Q ss_pred CcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 018167 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (360)
Q Consensus 118 f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a 197 (360)
-++=+..+.|.+-. ++..+ +|+ .+++..++.+. ..+.+..+.|.-..|..+ +.++.|+|.+|+..+...|
T Consensus 81 S~~Gl~lm~E~l~~-aag~~------lP~-V~vv~~R~~~~-p~~i~~d~~D~~~~rd~g-~~~~~a~~~QEa~D~~~~A 150 (394)
T PRK08367 81 ASQGLALMHEVLFI-AAGMR------LPI-VMAIGNRALSA-PINIWNDWQDTISQRDTG-WMQFYAENNQEALDLILIA 150 (394)
T ss_pred ccchHHHHhhHHHH-HHHcc------CCE-EEEECCCCCCC-CCCcCcchHHHHhccccC-eEEEeCCCHHHHHHHHHHH
Confidence 77777788898874 66665 455 55555554443 223444588876666654 6688899999999999988
Q ss_pred HhC----C--CCEEEeccc-cccccCc----c--c-----CCC---------CCccc-----------------------
Q 018167 198 IRD----P--NPVVFFEPK-WLYRLSV----E--E-----VPE---------DDYML----------------------- 227 (360)
Q Consensus 198 ~~~----~--~P~~i~~~k-~l~r~~~----~--~-----v~~---------~~~~~----------------------- 227 (360)
++. + -|++++.+. ++..... + + ++. ...+.
T Consensus 151 f~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~~~p~~~~~~~~~~~~~~~ 230 (394)
T PRK08367 151 FKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGALAFPAHYMEARYTVWEAME 230 (394)
T ss_pred HHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCCCCCCCceEEEEeecHHHHH
Confidence 873 3 699998765 2221100 0 0 000 00000
Q ss_pred ---------------CCC-ceEEee----eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHH
Q 018167 228 ---------------PLS-EAEVIR----EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV 287 (360)
Q Consensus 228 ---------------~~G-k~~vl~----~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~ 287 (360)
.+| +...+. ++.|++||++|+....+.+|++.|+++|++++++.+++++|||.+.+.+.+
T Consensus 231 ~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGllri~~~rPFP~~~i~~~l 310 (394)
T PRK08367 231 NAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEIRALA 310 (394)
T ss_pred HhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCcceeEEEeEecCCCHHHHHHHH
Confidence 012 111111 357999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEeCCCc---CCchHHHHHHHHHHhccccCCCce-EEEecCCCCccccccccCCCCHHHHHHHHHHhh
Q 018167 288 RKTGRLLISHEAPV---TGGFGAEISASILERCFLRLEAPV-ARVCGLDTPFPLVFEPFYMPTKNKILDAIKSTV 358 (360)
Q Consensus 288 ~~~~~ivvvEe~~~---~GGlgs~v~~~l~~~~~~~l~~~~-~~i~~~~~~~~~~~e~~gl~~~~~I~~~i~~~l 358 (360)
++.++|+|+|.+.. .|.|..+|...|...+ -..++ ..+++..+. -+ ++++|.+.+++++
T Consensus 311 ~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~~~---~~~~v~~~~~glgg~--------~~-~~~~~~~~~~~~~ 373 (394)
T PRK08367 311 KKAKVLAFLEKNISFGLGGAVFADASAALVNES---EKPKILDFIIGLGGR--------DV-TFKQLDEALEIAE 373 (394)
T ss_pred ccCCEEEEEeCCCCCCCCCcHHHHHHHHHhccC---CCCeEEEEEeCCCCC--------CC-CHHHHHHHHHHHH
Confidence 99999999998753 3567777877775321 01222 233333321 24 7888887777654
No 47
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.63 E-value=3.6e-15 Score=146.86 Aligned_cols=320 Identities=22% Similarity=0.299 Sum_probs=224.6
Q ss_pred hhHHHHhhhcc---cccccchhh-HHHHHhhcCCCCCCCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCcccc----
Q 018167 4 GLRRFVGSLSR---RNLSTACAN-KQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRC---- 75 (360)
Q Consensus 4 ~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~---- 75 (360)
.|.+|.+.-|= +.|+.|+-+ |-|.+-+-++...|.+++|..|-+-++..++.+..+|.+-++|++.|+ |..
T Consensus 524 dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGRGT-FshRHAM 602 (913)
T KOG0451|consen 524 DLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLYQGHNVRISGQDVGRGT-FSHRHAM 602 (913)
T ss_pred HHHHHhccCceecchhccccHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccCceeeeccccCccc-cccccee
Confidence 46777766553 888888754 556666667888899999999999999999999999999999999876 321
Q ss_pred -----chh-------HHHHh-CCCcEEechhHHHHHHHHHHHHhcCC--CeeEEEecCcccHH---HHHHHHHHHHHhcc
Q 018167 76 -----TTG-------LADRF-GKSRVFNTPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYIF---PAFDQIVNEAAKFR 137 (360)
Q Consensus 76 -----~~~-------~~~~~-gp~r~i~~GIaE~~~vg~AaGlA~~G--~~p~~~~~f~~F~~---ra~dQi~~~~a~~~ 137 (360)
|+. +.... |.--+-|..++|.+..|+-.|||.+. ..++++.+|.+|.. -.+|.... -+..+
T Consensus 603 ~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~iWEAQFGDFfNGAQIIiDTFi~-sgE~K 681 (913)
T KOG0451|consen 603 LVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGMSIENPNNLIIWEAQFGDFFNGAQIIIDTFIV-SGETK 681 (913)
T ss_pred eeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhcccccCCcccceeehhhhcccccCceEEEeeeec-ccchh
Confidence 111 11110 11235578899999999999999985 67999999999973 33444442 35566
Q ss_pred cccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHc-----------CCCCcEEEeeCCHHHHHHHHHHhH-h-CCCCE
Q 018167 138 YRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFC-----------HVPGLKVVIPRSPRQAKGLLLSCI-R-DPNPV 204 (360)
Q Consensus 138 ~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r-----------~iPn~~V~~P~d~~e~~~~l~~a~-~-~~~P~ 204 (360)
|+. .. .++...|.|+.|.+..|.|-..+.++. .--||.|+.|++|.++..+++.-+ . .++|.
T Consensus 682 Wl~----ss-glvmLLPHGyDGAgpeHSSCRiERFLQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPL 756 (913)
T KOG0451|consen 682 WLE----SS-GLVMLLPHGYDGAGPEHSSCRIERFLQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPL 756 (913)
T ss_pred hhh----hC-CeEEEccCCcCCCCCccchhhHHHHHHHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCce
Confidence 764 33 677778888877664444443444442 123899999999999999999654 3 59999
Q ss_pred EEeccccccccCccc------CCCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCC
Q 018167 205 VFFEPKWLYRLSVEE------VPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPW 278 (360)
Q Consensus 205 ~i~~~k~l~r~~~~~------v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~ 278 (360)
++..||.|.|.+... -|...+.-.+|....-.+.-+-+|+++|.......++.+.+..+. .+.++.+.++.||
T Consensus 757 iVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~~~~p~kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPF 835 (913)
T KOG0451|consen 757 IVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDTIAKPEKVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPF 835 (913)
T ss_pred EEechHHHhhCcchhhhHhhcCCCccccccccccccChhHheEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCC
Confidence 999999988865321 122333334554422223446678899999998888877664433 4899999999999
Q ss_pred cHHHHHHHHhcCCeE---EEE-eCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCcc
Q 018167 279 DKETVEASVRKTGRL---LIS-HEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP 336 (360)
Q Consensus 279 d~~~l~~~~~~~~~i---vvv-Ee~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~ 336 (360)
|.+.|+..+++++.+ |+- ||+ ..-|-++.|...+.+. +..+++..|.+.-|.|
T Consensus 836 Pi~~LQa~l~kY~~vqdfvWSQEEp-rNmGaWsFVrPRFEn~----lg~~L~~~GRpelp~p 892 (913)
T KOG0451|consen 836 PIQELQAQLAKYGNVQDFVWSQEEP-RNMGAWSFVRPRFENL----LGQQLHYCGRPELPTP 892 (913)
T ss_pred chHHHHHHHHhcCChhhhccccccc-ccCCcceeechHHHHH----hhhhheecCCCCCCCc
Confidence 999999999988654 444 666 5667788888776542 3455554444444443
No 48
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.63 E-value=6.2e-14 Score=147.21 Aligned_cols=293 Identities=14% Similarity=0.152 Sum_probs=199.1
Q ss_pred CcccHHHHHHHHHHHHHhc---CCCEEEEcCCCCCCCccccchhH-------------------------HHHhCCCcEE
Q 018167 38 KSLNLYSAINQALHIALET---DPRAYVFGEDVGFGGVFRCTTGL-------------------------ADRFGKSRVF 89 (360)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~---~~~vv~i~~Dl~~g~~~~~~~~~-------------------------~~~~gp~r~i 89 (360)
+.+++..||...|..|++. .++||-+.+|.+.. |+ ++++ ++.- ..|.+
T Consensus 487 ~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeart--fg-m~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~-~Gq~l 562 (885)
T TIGR00759 487 REVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEART--FG-MEGLFRQIGIYSPHGQTYTPVDADSLLAYKESK-DGQIL 562 (885)
T ss_pred CCccHHHHHHHHHHHHhcCcccccceeecCCCcccc--CC-hHHhhcccCccCCCCccCCccchhhhhhcccCC-CCcch
Confidence 6689999999999999975 35799999997632 21 2221 1222 47999
Q ss_pred echhHHHHHHH--HHHHHhcC--C--CeeEEEecCccc-HHHHHHHHHHHHHhcccccCCCccccceEEEcCCCC---CC
Q 018167 90 NTPLCEQGIVG--FAIGLAAM--G--NRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA---VG 159 (360)
Q Consensus 90 ~~GIaE~~~vg--~AaGlA~~--G--~~p~~~~~f~~F-~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~---~g 159 (360)
+.||+|.++++ +|+|.|.+ | +.||.- -|++| .+|..|.+- .+|.+.-+ .+++-+++|. .|
T Consensus 563 e~GI~E~g~~~~~~aagtsys~~g~~miP~yi-~YsmFgfqR~gD~~w-aa~d~~ar--------gfl~g~taGrtTL~g 632 (885)
T TIGR00759 563 QEGINEAGAMASWIAAATSYATHGEPMIPFYI-YYSMFGFQRIGDLCW-AAADQRAR--------GFLLGATAGRTTLNG 632 (885)
T ss_pred hhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeE-eeccccccchHHHHH-HHhhhcCC--------ceEeccCCCcccCCC
Confidence 99999999988 57777665 5 789987 49999 899999765 67776522 3444445554 34
Q ss_pred CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC----CCCEEEeccc--cccccCcccCCCC-CcccCCCce
Q 018167 160 HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVFFEPK--WLYRLSVEEVPED-DYMLPLSEA 232 (360)
Q Consensus 160 ~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~----~~P~~i~~~k--~l~r~~~~~v~~~-~~~~~~Gk~ 232 (360)
+|+.|++.--.-+-..+||+.-|.|+...|+..+++..++. ..-+|++... +-+.+ |..|+. ...+-.| .
T Consensus 633 EGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~q--p~~p~~~~egIlkG-~ 709 (885)
T TIGR00759 633 EGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQ--PPMPEGAEEGILKG-L 709 (885)
T ss_pred ccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCC--CCCCcchHHhHHhC-c
Confidence 55555444444567889999999999999999999988873 5567764322 11111 222221 1223344 3
Q ss_pred EEeee------CCcEEEEEechhHHHHHHHHHHHHhc-CCCeeEEEeccccCCcHHHH-------------------HHH
Q 018167 233 EVIRE------GSDITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDKETV-------------------EAS 286 (360)
Q Consensus 233 ~vl~~------G~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~ikP~d~~~l-------------------~~~ 286 (360)
+.+++ +.+|.|+++|..+.+|++|++.|+++ |+.++|++++|.+-|..+.. .+.
T Consensus 710 Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~~~~eR~n~lhP~~~~r~~~v~~~ 789 (885)
T TIGR00759 710 YRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDGHDVERWNLLHPTETPRVSYVAQV 789 (885)
T ss_pred eecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhHHHHHHHHhcCCCCCccccHHHHH
Confidence 44443 24799999999999999999999986 99999999999887777643 111
Q ss_pred Hhc-CCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCC-----CccccccccCCCCHHHHHHHHHHhhh
Q 018167 287 VRK-TGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDT-----PFPLVFEPFYMPTKNKILDAIKSTVN 359 (360)
Q Consensus 287 ~~~-~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~-----~~~~~~e~~gl~~~~~I~~~i~~~l~ 359 (360)
+.. ...+|++-+.. ..+.+.+... ++.++..+ |.|. .-+.+.+.|++ |++.|+.++.+.|.
T Consensus 790 L~~~~gP~va~tDy~------~~~~~qir~~----vp~~~~~L-GtDgFGrSdtr~~lr~~fev-Da~~IV~AAL~aL~ 856 (885)
T TIGR00759 790 LNEADAPVIASTDYV------RAFAEQIRPY----VPRKYVTL-GTDGFGRSDTRENLRHFFEV-DAKSVVLAALYALA 856 (885)
T ss_pred hccCCCCEEEEccch------hhhHHHHhhh----cCCCceEe-cCCCCCCCCCHHHHHHHcCC-CHHHHHHHHHHHHh
Confidence 222 23566666542 2234444321 24556555 3443 33567888999 99999999988763
No 49
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.45 E-value=8e-13 Score=138.24 Aligned_cols=303 Identities=22% Similarity=0.328 Sum_probs=216.7
Q ss_pred chhHHHHhhhcc--cccccchhhHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccc------
Q 018167 3 SGLRRFVGSLSR--RNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFR------ 74 (360)
Q Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~------ 74 (360)
+.|+++++-+.. ++|..|+..++.++++....+.+....|..+-.-+...++.+...+.+-++|.+.|+-+-
T Consensus 527 ~~L~~L~~kl~~~Pe~f~~h~~v~~~~~~r~~~~~~~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~RGTF~hRHaVlh 606 (906)
T COG0567 527 KTLKELGKKLCTIPEGFEVHPRVKKILEDRKAMAEGGQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVLH 606 (906)
T ss_pred HHHHHHHHHhhcCCcceehhHHHHHHHHHHHHHhccccccchhHHHHhcccceeccCCccccccccCCCcCccccceeee
Confidence 467888887776 899999999998888877787888899999999999999999999999999998765211
Q ss_pred ---------cchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCC--CeeEEEecCcccH---HHHHHHHHHHHHhccccc
Q 018167 75 ---------CTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYI---FPAFDQIVNEAAKFRYRS 140 (360)
Q Consensus 75 ---------~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G--~~p~~~~~f~~F~---~ra~dQi~~~~a~~~~~~ 140 (360)
.+..+....|.=.++|.+.+|.+++|+-.|.+..- ...+++.+|.+|. |..+||.+ +.+.++|--
T Consensus 607 dq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfi-sSge~KW~r 685 (906)
T COG0567 607 DQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFI-SSGEQKWGR 685 (906)
T ss_pred cccCccccChhhhcccccceEEEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeecccc-ccHHHHHHH
Confidence 12233333344578899999999999999999984 4566666999997 78899987 456677742
Q ss_pred CCCccccceEEEcCCCCCCCCCCCC-CchHHHH--HcCCCCcEEEeeCCHHHHHHHHHHhHh--CCCCEEEecccccccc
Q 018167 141 GNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAF--FCHVPGLKVVIPRSPRQAKGLLLSCIR--DPNPVVFFEPKWLYRL 215 (360)
Q Consensus 141 ~~~~~v~~~v~~~~~g~~g~~g~~H-s~~d~a~--~r~iPn~~V~~P~d~~e~~~~l~~a~~--~~~P~~i~~~k~l~r~ 215 (360)
.. .++..-|.|+-|.| +.| |-....+ +.+=-||+|..|+++.+.+.+++.-+. ...|.+++.||.+.|.
T Consensus 686 ----~s-gLv~lLPHgyEGQG-PEHSSaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~ 759 (906)
T COG0567 686 ----MS-GLVMLLPHGYEGQG-PEHSSARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRH 759 (906)
T ss_pred ----hc-CceEEccCCCCCCC-CcCccchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhc
Confidence 33 67777888876655 555 4444444 455569999999999999999996554 3899999999999885
Q ss_pred Cccc-----CCCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcC-CCeeEEEeccccCCcHHHHHHHHhc
Q 018167 216 SVEE-----VPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEG-ISCELIDLKTLIPWDKETVEASVRK 289 (360)
Q Consensus 216 ~~~~-----v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~G-i~v~Vi~~~~ikP~d~~~l~~~~~~ 289 (360)
+... +.+..+...++........-..+++++|.+.....+.. ++.| .++.++.+..|.||+.+.+.+.+++
T Consensus 760 ~~a~S~~~el~~~~F~~vl~d~~~~~~~v~rvvlcSGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~ 836 (906)
T COG0567 760 KLAVSSLEELTEGTFQPVLEDIDELDPKVKRVVLCSGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAK 836 (906)
T ss_pred cccCCchhhhchhhhhhhhccccccccceeeEEeeccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHh
Confidence 4321 11111111111110011113567888898777665544 4445 4899999999999999999998887
Q ss_pred C---CeEEEEeCCCcCCchHHHHHHHHHH
Q 018167 290 T---GRLLISHEAPVTGGFGAEISASILE 315 (360)
Q Consensus 290 ~---~~ivvvEe~~~~GGlgs~v~~~l~~ 315 (360)
+ +.++++-|-...=|-+..+...+.+
T Consensus 837 y~~~~e~vW~QEEp~N~Gaw~~~~~~l~~ 865 (906)
T COG0567 837 YPNVKEFVWCQEEPKNQGAWYYIQPHLEE 865 (906)
T ss_pred ccccccccccccCCCccccHHHHHHHHHH
Confidence 6 3457774433444445555555544
No 50
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.38 E-value=7.6e-12 Score=107.48 Aligned_cols=119 Identities=18% Similarity=0.253 Sum_probs=89.4
Q ss_pred HHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC-
Q 018167 81 DRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG- 159 (360)
Q Consensus 81 ~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g- 159 (360)
++. |++.+..++.|++++++|.|+|+.|.+|++.+++.+++.++++++. .++..+ .|+ .++ .+..+...
T Consensus 31 ~~~-~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~~~------~Pv-l~i-~~~~~~~~~ 100 (154)
T cd06586 31 REG-DKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAAEH------LPV-VFL-IGARGISAQ 100 (154)
T ss_pred hcc-CCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHhcC------CCE-EEE-eCCCChhhh
Confidence 345 7999999999999999999999997799888778999999999999 566544 355 333 32233233
Q ss_pred CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHH---HhHhCCCCEEEecc
Q 018167 160 HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL---SCIRDPNPVVFFEP 209 (360)
Q Consensus 160 ~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~---~a~~~~~P~~i~~~ 209 (360)
..+++|.+++.++++.+|++.+..|++.++...+.+ .+...++|++|+.|
T Consensus 101 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 101 AKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred ccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 344556699999999999999998888766644433 33335789999765
No 51
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.37 E-value=1.8e-10 Score=116.63 Aligned_cols=246 Identities=20% Similarity=0.229 Sum_probs=173.5
Q ss_pred CcEEechhHHHHHHHHHHHHhcCCCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH 165 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~H 165 (360)
+-+++.+..|--+..+|+|.+..|.+.++.. =..=+.+|-|.+++ +++.. . .- .++++ ++.|..-|
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~m-KhVGlNvAsDpl~s-~ay~G--v----~G-Glviv-----~aDDpg~~ 123 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTM-KHVGLNVASDPLMS-LAYAG--V----TG-GLVIV-----VADDPGMH 123 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEe-cccccccchhhhhh-hhhcC--c----cc-cEEEE-----EccCCCcc
Confidence 7999999999999999999999999999984 56667899999885 55433 1 12 34433 23344444
Q ss_pred -C--chHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCc---------cc-CCCC-Cccc
Q 018167 166 -S--QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSV---------EE-VPED-DYML 227 (360)
Q Consensus 166 -s--~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~l~r~~~---------~~-v~~~-~~~~ 227 (360)
| .+|-.++...-.+-|+.|+|++|+..+.+.+++ ...||.+|...|...... +. .+.. .+.-
T Consensus 124 SSqneqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k 203 (640)
T COG4231 124 SSQNEQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIK 203 (640)
T ss_pred cccchhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccC
Confidence 2 355566666677789999999999999999998 388999986665432110 00 0110 1100
Q ss_pred CCCceEE-------------------------------eeeC--CcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc
Q 018167 228 PLSEAEV-------------------------------IREG--SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 228 ~~Gk~~v-------------------------------l~~G--~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
..|++.. +..+ .++-||+.|..+.-+.+|.+.| |++..++.+-+
T Consensus 204 ~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~ 280 (640)
T COG4231 204 DPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGT 280 (640)
T ss_pred CccceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecC
Confidence 1111110 1113 6888999999999988886654 89999999999
Q ss_pred ccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCccccccccCCCCHHHHHHHH
Q 018167 275 LIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAI 354 (360)
Q Consensus 275 ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~~~~e~~gl~~~~~I~~~i 354 (360)
.+||+.+.+.+.++.-++|+||||... =+-..+.+.+.+.+ .++ .+++.++. ++-.++-| |.+.|..+|
T Consensus 281 ~~Plp~~~i~~F~~g~~~vlVVEE~~P--~iE~qv~~~l~~~g-----~~v-~v~GKd~g--llP~~GEl-t~~~i~~ai 349 (640)
T COG4231 281 PYPLPEQLIENFLKGLERVLVVEEGEP--FIEEQVKALLYDAG-----LPV-EVHGKDEG--LLPMEGEL-TPEKIANAI 349 (640)
T ss_pred CcCCCHHHHHHHHhcCcEEEEEecCCc--hHHHHHHHHHHhcC-----Cce-Eeeccccc--ccCccccc-CHHHHHHHH
Confidence 999999999999999999999999765 25666666665542 233 45577653 23344557 999999999
Q ss_pred HHhhh
Q 018167 355 KSTVN 359 (360)
Q Consensus 355 ~~~l~ 359 (360)
.+++.
T Consensus 350 ~~~l~ 354 (640)
T COG4231 350 AKFLG 354 (640)
T ss_pred HHHhC
Confidence 88764
No 52
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.36 E-value=6.6e-11 Score=120.08 Aligned_cols=292 Identities=15% Similarity=0.112 Sum_probs=191.7
Q ss_pred CCcccHHHHHHHHHHHHHhcC---CCEEEEcCCCCCCCccccchhH-------------------------HHHhCCCcE
Q 018167 37 GKSLNLYSAINQALHIALETD---PRAYVFGEDVGFGGVFRCTTGL-------------------------ADRFGKSRV 88 (360)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~---~~vv~i~~Dl~~g~~~~~~~~~-------------------------~~~~gp~r~ 88 (360)
|+++++..||...|.++++++ ++||-+.+|.+.. |+ ++++ ++.- ..+.
T Consensus 489 g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearT--fg-meg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~-~GQi 564 (887)
T COG2609 489 GEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEART--FG-MEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAE-SGQI 564 (887)
T ss_pred CccchhHHHHHHHHHHHHhccccCCccccccCchhhh--cc-chhhhhhcccccCCCccCCccchhhhhhhhhCC-Ccch
Confidence 456899999999999999843 5799999997621 11 1211 1121 4689
Q ss_pred EechhHHHHHHH--HHHHHhcC--C--CeeEEEecCccc-HHHHHHHHHHHHHhcccccCCCccccceEEEcCCCC--CC
Q 018167 89 FNTPLCEQGIVG--FAIGLAAM--G--NRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA--VG 159 (360)
Q Consensus 89 i~~GIaE~~~vg--~AaGlA~~--G--~~p~~~~~f~~F-~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~--~g 159 (360)
++-||+|.++++ +|+|.+.+ | +.||.- -|++| ++|.-|- .+.+|.+.-+ +.++.-++++. .|
T Consensus 565 LqeGInE~ga~~sw~AagtSys~~~~pmiPfyi-~YsmFgfqRigD~-~waA~dq~AR-------gFLlgaTagrtTLng 635 (887)
T COG2609 565 LQEGINEAGAFASWIAAGTSYSTHGEPMIPFYI-YYSMFGFQRIGDL-LWAAGDQDAR-------GFLLGATAGRTTLNG 635 (887)
T ss_pred HHhhhccccHHHHHHHHhcccccCCccceeeee-eechhhhhhHHHH-HHHHHhhhhc-------ceeEeecCCCceeCc
Confidence 999999999988 67777765 4 789977 49999 8999995 4578877632 13333334432 34
Q ss_pred CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-------CCCEEEeccccccccCc--ccCCCC-CcccCC
Q 018167 160 HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-------PNPVVFFEPKWLYRLSV--EEVPED-DYMLPL 229 (360)
Q Consensus 160 ~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-------~~P~~i~~~k~l~r~~~--~~v~~~-~~~~~~ 229 (360)
+|+.|.+..-.-+-..+||+.-+.|+-..|+..+++..++. +.-.|| +++.... |..|.+ +..+..
T Consensus 636 EGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYl----t~~ne~~~qPamp~gae~gI~k 711 (887)
T COG2609 636 EGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYI----TLSNENYPQPAMPEGAEEGIIK 711 (887)
T ss_pred cccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEE----EeccCcCCCCCCCCcchhhhhh
Confidence 44444333222334679999999999999999999998873 234666 3333222 222322 123333
Q ss_pred CceEEeee-----CCcEEEEEechhHHHHHHHHHHHHh-cCCCeeEEEeccccCCcHHH-------------------HH
Q 018167 230 SEAEVIRE-----GSDITLVGWGAQLSIMEQACLDAEK-EGISCELIDLKTLIPWDKET-------------------VE 284 (360)
Q Consensus 230 Gk~~vl~~-----G~dv~Iia~G~~~~~al~Aa~~L~~-~Gi~v~Vi~~~~ikP~d~~~-------------------l~ 284 (360)
| .+.++. +.++.|+++|....+|++|++.|++ .|+.+.|..++|..-|..+. +.
T Consensus 712 G-~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R~n~lhP~~~~~v~yv~ 790 (887)
T COG2609 712 G-IYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHPTETPRVPYVA 790 (887)
T ss_pred c-eeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhcchHHHHHHHhcCCCCCCCchHHH
Confidence 4 333432 4689999999999999999999988 59999999999876655432 33
Q ss_pred HHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCC-----CccccccccCCCCHHHHHHHHHHhh
Q 018167 285 ASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDT-----PFPLVFEPFYMPTKNKILDAIKSTV 358 (360)
Q Consensus 285 ~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~-----~~~~~~e~~gl~~~~~I~~~i~~~l 358 (360)
+.+.....+|++-+.. ...++++... .+....-+ |.|. .-+.+.++|.+ |++.|+-++.+.|
T Consensus 791 ~~L~~~~p~Va~tDy~------~~~a~qir~~----vp~~y~vL-GtdgFGrSdsr~~Lr~~fev-Da~~vv~Aal~~L 857 (887)
T COG2609 791 QVLNADGPVVAVTDYM------KLFAEQIRAV----VPQRYRVL-GTDGFGRSDSRENLRRFFEV-DAYYVVVAALSAL 857 (887)
T ss_pred HHhccCCCeEEechhh------HhHHHHHhcc----cCCeeEEe-ccCCCCccCcHHHHHHHhcc-chHHHHHHHHHHH
Confidence 3344345566665543 2345555431 23334333 4443 23567888888 9999998887765
No 53
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.34 E-value=3.9e-10 Score=124.81 Aligned_cols=218 Identities=14% Similarity=0.164 Sum_probs=150.3
Q ss_pred cEEechhHHHHHHHHHHHHhcCCCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC
Q 018167 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS 166 (360)
Q Consensus 87 r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs 166 (360)
.|+++= +|.+.++++.|.+..|.+.++. |-+.=+....+.+-. ++-.+ +|+ .+++..+++.......+-.
T Consensus 53 ~~vq~E-sE~~A~~av~GA~~aGara~T~-TSs~GL~LM~e~l~~-~ag~~------~P~-Vi~va~R~~~~~~~~i~~d 122 (1165)
T TIGR02176 53 KVVEMQ-SEAGAAGAVHGALQTGALTTTF-TASQGLLLMIPNMYK-IAGEL------LPC-VFHVSARAIAAHALSIFGD 122 (1165)
T ss_pred eEEEcc-chHHHHHHHHhHhhcCCCEEEe-cChhHHHHHHHHHHH-HHhcc------CCE-EEEEecCCCCCCCCccCCC
Confidence 477765 9999999999999999999988 455544555666642 33233 455 5555566665432222224
Q ss_pred chHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecccc-cccc--Cccc---------CCCC-------
Q 018167 167 QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKW-LYRL--SVEE---------VPED------- 223 (360)
Q Consensus 167 ~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~-l~r~--~~~~---------v~~~------- 223 (360)
+.|+...|.. |..+++|++.+|+..+...|++ ++.|++++++-- +... +... ++..
T Consensus 123 h~Dv~~~R~~-G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~ 201 (1165)
T TIGR02176 123 HQDVMAARQT-GFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRK 201 (1165)
T ss_pred chHHHHhhcC-CeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccc
Confidence 7777666665 5689999999999998777765 588999987642 1111 0000 0000
Q ss_pred -----CcccC--------------------------------------CCc----eEEe-eeCCcEEEEEechhHHHHHH
Q 018167 224 -----DYMLP--------------------------------------LSE----AEVI-REGSDITLVGWGAQLSIMEQ 255 (360)
Q Consensus 224 -----~~~~~--------------------------------------~Gk----~~vl-~~G~dv~Iia~G~~~~~al~ 255 (360)
+.+.. .|. .+.. .+..+.+||++|+....+.+
T Consensus 202 ~~l~~~~p~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~e 281 (1165)
T TIGR02176 202 RSMNPEHPHVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEE 281 (1165)
T ss_pred cccCCCCCceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHH
Confidence 00000 111 1111 14578999999999999999
Q ss_pred HHHHHHhcCCCeeEEEeccccCCcHHHHHHHH-hcCCeEEEEeCCCcCC----chHHHHHHHHHH
Q 018167 256 ACLDAEKEGISCELIDLKTLIPWDKETVEASV-RKTGRLLISHEAPVTG----GFGAEISASILE 315 (360)
Q Consensus 256 Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~-~~~~~ivvvEe~~~~G----Glgs~v~~~l~~ 315 (360)
|++.|+++|++|++|.+++++||+.+.|.+.+ ++.++|+|+|.....| -|...|...+..
T Consensus 282 av~~Lr~~G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~ 346 (1165)
T TIGR02176 282 TVDYLNAKGEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYE 346 (1165)
T ss_pred HHHHHHhcCCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhh
Confidence 99999999999999999999999999999988 5779999999875433 367777776654
No 54
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.26 E-value=1.9e-09 Score=105.80 Aligned_cols=239 Identities=17% Similarity=0.156 Sum_probs=156.3
Q ss_pred CCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecCcccHHHHHHHHHHHHHhc
Q 018167 57 DPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKF 136 (360)
Q Consensus 57 ~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F~~ra~dQi~~~~a~~ 136 (360)
..+++..=+=...+..+..+..+..+. .-.|+++- +|.+.++++.|.+..|.|.++. |.++=+....+.+- .++.+
T Consensus 20 ~~~~~a~YPITPss~i~e~l~~~~~~~-~~~~vq~E-sE~~a~s~v~GA~~aGar~~Ta-TSg~Gl~Lm~E~l~-~a~~~ 95 (365)
T COG0674 20 GCRVIAAYPITPSSEIAEYLASWKAKV-GGVFVQME-SEIGAISAVIGASYAGARAFTA-TSGQGLLLMAEALG-LAAGT 95 (365)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHhhc-CcEEEEec-cHHHHHHHHHHHHhhCcceEee-cCCccHHHHHHHHH-HHHhc
Confidence 456665444333222111123334444 36777775 9999999999999999999999 57776666677665 35655
Q ss_pred ccccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccc
Q 018167 137 RYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWL 212 (360)
Q Consensus 137 ~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~l 212 (360)
. +|+ .++...+++......++-.+.|+-..|.. +..+++-+|.+|+......|++ ..-|++++.+.-+
T Consensus 96 ~------~P~-Vi~~~~R~~ps~g~p~~~dq~D~~~~r~~-g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~ 167 (365)
T COG0674 96 E------TPL-VIVVAQRPLPSTGLPIKGDQSDLMAARDT-GFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFL 167 (365)
T ss_pred c------CCe-EEEEeccCcCCCcccccccHHHHHHHHcc-CceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccch
Confidence 5 466 56666777776655455569999888876 7777777799999887777765 4789998854322
Q ss_pred cccC----------c--ccCCC--C------CcccCCC--------------------------------------c---
Q 018167 213 YRLS----------V--EEVPE--D------DYMLPLS--------------------------------------E--- 231 (360)
Q Consensus 213 ~r~~----------~--~~v~~--~------~~~~~~G--------------------------------------k--- 231 (360)
.... . +.+++ . +.+...| .
T Consensus 168 ~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~ 247 (365)
T COG0674 168 ASHEYEKIELLEQDLPDEEIPDYEPYTALDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYE 247 (365)
T ss_pred hcCceeeeecCccccccccccccCcccccCCCCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCc
Confidence 1110 0 00000 0 0000001 0
Q ss_pred -eEEee-eCCcEEEEEechhHHHHHHHHHHH-HhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHH
Q 018167 232 -AEVIR-EGSDITLVGWGAQLSIMEQACLDA-EKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGA 307 (360)
Q Consensus 232 -~~vl~-~G~dv~Iia~G~~~~~al~Aa~~L-~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs 307 (360)
..+.. ++.+++||+||+....+.+++..+ +++|++++++.+++++||+.+.+.+.+++++.+.|++-....|++++
T Consensus 248 ~~~~~g~~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~g~~~~ 326 (365)
T COG0674 248 PFLYYGYEDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISLGGLAE 326 (365)
T ss_pred cceeecCCCcCEEEEEeccchHhHHHHHHHHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCCccchh
Confidence 01111 457899999998887777777655 58899999999999999999999999988775545544334466444
No 55
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.94 E-value=1.8e-07 Score=102.83 Aligned_cols=298 Identities=14% Similarity=0.067 Sum_probs=177.5
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCC--CC-CCccc-cchhHHHHhCC-----CcEEechhHHHHHHHHHHHHh----
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDV--GF-GGVFR-CTTGLADRFGK-----SRVFNTPLCEQGIVGFAIGLA---- 106 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl--~~-g~~~~-~~~~~~~~~gp-----~r~i~~GIaE~~~vg~AaGlA---- 106 (360)
++-.+|+...+.+-.+.|..-=+-|+.+ +| |+-.+ ....|. ++.. +-+++-|+.|--+..++.|.+
T Consensus 20 l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~-~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~~ 98 (1159)
T PRK13030 20 LTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALW-KAKKLLDASDIRFLPGINEELAATAVLGTQQVEA 98 (1159)
T ss_pred eeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHH-HhhhhhcccceEEeecCCHHHHHHHHHHhccccc
Confidence 5667888877776555554311111111 11 22111 122333 2211 379999999999999999999
Q ss_pred -----cCCCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCC-Cc--hHHHHHcCCCC
Q 018167 107 -----AMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQ--SPEAFFCHVPG 178 (360)
Q Consensus 107 -----~~G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~H-s~--~d~a~~r~iPn 178 (360)
..|.+.+++ +=.+=+.||-|-+++ +++..- .+.|.+++. .|.|..-| || .|-.++...-+
T Consensus 99 ~~~~~~~Gv~~l~~-~K~~GvnvaaD~l~~-~n~~G~-----~~~GG~v~v-----~gDDpg~~SSq~eqdSr~~~~~a~ 166 (1159)
T PRK13030 99 DPERTVDGVFAMWY-GKGPGVDRAGDALKH-GNAYGS-----SPHGGVLVV-----AGDDHGCVSSSMPHQSDFALIAWH 166 (1159)
T ss_pred cCCccccceEEEEe-cCcCCcccchhHHHH-HHhhcC-----CCCCcEEEE-----EecCCCCccCcCHHHHHHHHHHcC
Confidence 566666887 467778999999986 343221 112234433 12233333 22 22233333334
Q ss_pred cEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccC---------c-ccCCCCCccc-----------------
Q 018167 179 LKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLS---------V-EEVPEDDYML----------------- 227 (360)
Q Consensus 179 ~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~l~r~~---------~-~~v~~~~~~~----------------- 227 (360)
|-|+.|+|++|+..+.+++++ +.-||.++.-.++.... . +..+ .++..
T Consensus 167 iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~-~~f~~~~~~~~~r~~~~p~~~~ 245 (1159)
T PRK13030 167 MPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAP-EDFTPPAGGLHNRWPDLPSLAI 245 (1159)
T ss_pred CceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCc-cccCCCcccccccCCCCcHHHH
Confidence 559999999999999999887 37899997443322110 0 0011 00111
Q ss_pred ------------------CCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCC-----CeeEEEeccccCCcHHHHH
Q 018167 228 ------------------PLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGI-----SCELIDLKTLIPWDKETVE 284 (360)
Q Consensus 228 ------------------~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi-----~v~Vi~~~~ikP~d~~~l~ 284 (360)
++.+..+-.++.++-||++|.....+.||.+.|..++. .++|+.+-..+||+.+.+.
T Consensus 246 ~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i~ 325 (1159)
T PRK13030 246 EARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRLR 325 (1159)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHHH
Confidence 11111111123679999999999999999998865443 3677777788999999999
Q ss_pred HHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCC--ccccccccCCCCHHHHHHHHHHhh
Q 018167 285 ASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTP--FPLVFEPFYMPTKNKILDAIKSTV 358 (360)
Q Consensus 285 ~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~--~~~~~e~~gl~~~~~I~~~i~~~l 358 (360)
+.++...+|+||||... =+-..+.+.+.+.. ...++.-+ |..+. -|.+=....| |++.|.+++.+.+
T Consensus 326 ~F~~g~d~VlVVEE~~p--~iE~Qlk~~l~~~~---~~~~~~v~-GK~~~~G~pllp~~gEl-~~~~v~~~l~~~l 394 (1159)
T PRK13030 326 EFADGLEEILVIEEKRP--VIEQQIKDYLYNRP---GGARPRVV-GKHDEDGAPLLSELGEL-RPSLIAPVLAARL 394 (1159)
T ss_pred HHHhcCCEEEEEeCCch--HHHHHHHHHHHhcc---ccCCceeE-EEECCCCCcCCCCcCCc-CHHHHHHHHHHHH
Confidence 99999999999999753 24556666665532 11122223 33321 1233233446 9999999886654
No 56
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=98.79 E-value=1.8e-06 Score=94.99 Aligned_cols=250 Identities=16% Similarity=0.099 Sum_probs=160.4
Q ss_pred CcEEechhHHHHHHHHH---------HHHhcCCCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCC
Q 018167 86 SRVFNTPLCEQGIVGFA---------IGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG 156 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~A---------aGlA~~G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g 156 (360)
+-+|+-|+.|--+..++ .|.+..|.+.+|+ +=.+=+.||-|-+++ +++..- .+.|.+++.
T Consensus 82 ~i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~Gv~~l~y-~K~pGvn~aaD~l~~-~n~~G~-----~~~GGvv~v---- 150 (1165)
T PRK09193 82 DIVFQPGLNEDLAATAVWGSQQVNLFPGAKYDGVFGMWY-GKGPGVDRSGDVFRH-ANAAGT-----SPHGGVLAL---- 150 (1165)
T ss_pred ceEEeeccCHHHHHHHHhhhcccccccceeeccceEEEe-cCcCCccccHhHHHH-HHhhcC-----CCCCcEEEE----
Confidence 37899999999999999 6668899999999 577778999999996 343221 122234433
Q ss_pred CCCCCCCCC-Cc--hHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccC--c--------cc
Q 018167 157 AVGHGGHYH-SQ--SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLS--V--------EE 219 (360)
Q Consensus 157 ~~g~~g~~H-s~--~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~l~r~~--~--------~~ 219 (360)
.|.|..-| |+ .|-.++...-+|-|+.|+|++|+..+..++++ +.-||.++.-.+..... . ..
T Consensus 151 -~gDDpg~~SSq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~ 229 (1165)
T PRK09193 151 -AGDDHAAKSSTLPHQSEHAFKAAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIV 229 (1165)
T ss_pred -EecCCCCccccchhhhHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCC
Confidence 12232222 11 12222222234559999999999999998887 37899997443322110 0 00
Q ss_pred CCCCCcccCCC----ceE-----------------------------Eeee--CCcEEEEEechhHHHHHHHHHHHHhcC
Q 018167 220 VPEDDYMLPLS----EAE-----------------------------VIRE--GSDITLVGWGAQLSIMEQACLDAEKEG 264 (360)
Q Consensus 220 v~~~~~~~~~G----k~~-----------------------------vl~~--G~dv~Iia~G~~~~~al~Aa~~L~~~G 264 (360)
.+ +++..+.| +|- +... +.++-||++|.....+.+|.+.| |
T Consensus 230 ~~-~~f~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g 305 (1165)
T PRK09193 230 LP-EDFEMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---G 305 (1165)
T ss_pred Cc-ccccCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---C
Confidence 11 11112222 110 0111 36799999999999999988876 5
Q ss_pred CC--------eeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCc-
Q 018167 265 IS--------CELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPF- 335 (360)
Q Consensus 265 i~--------v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~- 335 (360)
++ +.|+.+-..+|||.+.+.+.+++...|+||||-.. =+-..|.+.+.+.. ...+..-+ |..++-
T Consensus 306 ~~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~~~vlVVEE~~p--~iE~qlk~~l~~~~---~~~rp~v~-GK~~~~g 379 (1165)
T PRK09193 306 LDEETAARLGIRLYKVGMVWPLEPQGVRAFAEGLDEILVVEEKRQ--IIEYQLKEELYNWP---DDVRPRVI-GKFDPQG 379 (1165)
T ss_pred CChhhhcccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch--HHHHHHHHHHhhcc---CCcCceeE-eeeCCCC
Confidence 54 89999999999999999999999999999999653 25666666665532 12222233 443321
Q ss_pred -cccccccCCCCHHHHHHHHHHhh
Q 018167 336 -PLVFEPFYMPTKNKILDAIKSTV 358 (360)
Q Consensus 336 -~~~~e~~gl~~~~~I~~~i~~~l 358 (360)
+.+-....| |++.|.+++.+.+
T Consensus 380 ~~llp~~gEl-~~~~va~~l~~~l 402 (1165)
T PRK09193 380 NWLLPAHGEL-SPAIIAKAIARRL 402 (1165)
T ss_pred CccCCCcCCc-CHHHHHHHHHHHh
Confidence 122223446 9999998886654
No 57
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.76 E-value=1e-06 Score=96.64 Aligned_cols=250 Identities=16% Similarity=0.114 Sum_probs=156.7
Q ss_pred CcEEechhHHHHH---------HHHHHHHhcCCCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCC
Q 018167 86 SRVFNTPLCEQGI---------VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG 156 (360)
Q Consensus 86 ~r~i~~GIaE~~~---------vg~AaGlA~~G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g 156 (360)
+-+|+-|+.|--+ +.++.|.+..|.+.+++ +=.+=+.|+-|-+++..+. +.. +-|.+++.
T Consensus 85 ~i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwy-gK~pGvn~aaD~l~h~n~~--gt~----~~GGvv~v---- 153 (1186)
T PRK13029 85 DVVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWY-GKGPGVDRSGDALRHANLA--GTS----PLGGVLVL---- 153 (1186)
T ss_pred ceEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEe-cCcCCcccchhHHHHhhcc--ccC----CCCcEEEE----
Confidence 4789999999999 55666666789999998 5777789999999964321 110 11234433
Q ss_pred CCCCCCCCC-----CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccccCc-----c---
Q 018167 157 AVGHGGHYH-----SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSV-----E--- 218 (360)
Q Consensus 157 ~~g~~g~~H-----s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~l~r~~~-----~--- 218 (360)
.|.|..-| ++++. ..... |-|+.|+|++|+..+..++++ +.-||.++.-.++..... +
T Consensus 154 -~gDDpg~~SSq~eqdSr~~~~~a~---iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~ 229 (1186)
T PRK13029 154 -AGDDHGAKSSSVAHQSDHTFIAWG---IPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRV 229 (1186)
T ss_pred -EecCCCCccccCHHHHHHHHHHcC---CceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCccc
Confidence 12232223 12232 33344 459999999999999998887 378999975443321110 0
Q ss_pred --cCCCCCcccC-----------------------------------CCceEEeeeCCcEEEEEechhHHHHHHHHHHHH
Q 018167 219 --EVPEDDYMLP-----------------------------------LSEAEVIREGSDITLVGWGAQLSIMEQACLDAE 261 (360)
Q Consensus 219 --~v~~~~~~~~-----------------------------------~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~ 261 (360)
..| .++..+ +.+..+-.++.++-|||+|.....+.+|.+.|.
T Consensus 230 ~~~~p-~~f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lg 308 (1186)
T PRK13029 230 DIVLP-DDFVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLG 308 (1186)
T ss_pred ccCCc-ccccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcC
Confidence 011 011111 111100012367999999999999999888762
Q ss_pred hc-----CCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCC---
Q 018167 262 KE-----GISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDT--- 333 (360)
Q Consensus 262 ~~-----Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~--- 333 (360)
-. -+.+.|+.+-..+|||.+.+.+.++....|+||||-.. =+-..|.+.+.+.. ...+..-+ |..+
T Consensus 309 l~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p--~iE~qlk~~l~~~~---~~~rp~v~-GK~~~~~ 382 (1186)
T PRK13029 309 LDDATCAALGIRLLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRA--VIEYQLKEELYNWR---EDVRPAIF-GKFDHRD 382 (1186)
T ss_pred CChhhccccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch--HHHHHHHHHHhhcc---CCcCCeeE-ecccccc
Confidence 11 12389999999999999999999999999999999653 25666666665532 12222223 4432
Q ss_pred --------Cc--cccccccCCCCHHHHHHHHHHhh
Q 018167 334 --------PF--PLVFEPFYMPTKNKILDAIKSTV 358 (360)
Q Consensus 334 --------~~--~~~~e~~gl~~~~~I~~~i~~~l 358 (360)
.- +.+-....| |++.|.+++.+.+
T Consensus 383 ~~~~~~~~~~g~~llp~~gEL-~p~~va~~l~~~l 416 (1186)
T PRK13029 383 GAGGEWSVPAGRWLLPAHAEL-SPALIAKAIARRL 416 (1186)
T ss_pred cccccccccccCCCCCcccCc-CHHHHHHHHHHHH
Confidence 00 122223446 8999988886654
No 58
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=1.1e-06 Score=90.30 Aligned_cols=227 Identities=18% Similarity=0.234 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHhcCCC-EEEEcCCCC----CCCccccchhHH--HH-------hCCCcEEechhHHHHHHHHHHHHhcC
Q 018167 43 YSAINQALHIALETDPR-AYVFGEDVG----FGGVFRCTTGLA--DR-------FGKSRVFNTPLCEQGIVGFAIGLAAM 108 (360)
Q Consensus 43 r~a~~~~L~~l~~~~~~-vv~i~~Dl~----~g~~~~~~~~~~--~~-------~gp~r~i~~GIaE~~~vg~AaGlA~~ 108 (360)
..+.++.|.++++.|++ +.+.++|=. .++++..++... .. -...|+++ .++|..+.|.+.|+++.
T Consensus 404 t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~Lt 482 (793)
T COG3957 404 TTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLT 482 (793)
T ss_pred HHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHHhc
Confidence 57899999999999998 999999943 233343333321 11 12358888 79999999999999999
Q ss_pred CCeeEEEecCcccH---HHHHHHHH--HHHH-hcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHHc-CCC-Cc
Q 018167 109 GNRAIAEIQFADYI---FPAFDQIV--NEAA-KFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFFC-HVP-GL 179 (360)
Q Consensus 109 G~~p~~~~~f~~F~---~ra~dQi~--~~~a-~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~r-~iP-n~ 179 (360)
|.+-+++ +|-.|+ .-++.|.- ..++ ...|+.. .+...++.+...---++.|-+|+ -.-+..+. ..| ++
T Consensus 483 Gr~glf~-sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~~--~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~v 559 (793)
T COG3957 483 GRHGLFA-SYEAFAHIVDSMFNQHAKWLKVTREVEWRRP--IPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDIV 559 (793)
T ss_pred CCcccee-eHHHHHHHHHHHHhhhHHHHHHHHhcccCCC--CCcccceeehhhhhcccCCCccCCchHHHHHHhhccCce
Confidence 9999999 588886 23333321 1112 2234321 11112332222223456788885 44444332 233 67
Q ss_pred EEEeeCCHHHHHHHHHHhHhCC-CCEEEeccccccccCcccCCC---CCcccCCCc--eEEee--eC-CcEEEEEechh-
Q 018167 180 KVVIPRSPRQAKGLLLSCIRDP-NPVVFFEPKWLYRLSVEEVPE---DDYMLPLSE--AEVIR--EG-SDITLVGWGAQ- 249 (360)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~~~-~P~~i~~~k~l~r~~~~~v~~---~~~~~~~Gk--~~vl~--~G-~dv~Iia~G~~- 249 (360)
.|+.|+|++-+..++.+|++.+ .-..|..+| ++.|+... ......-|- |+... +| .||++.+.|.+
T Consensus 560 RvyfPpDaNtlLav~d~~l~s~n~in~iVa~K----~p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~ 635 (793)
T COG3957 560 RVYFPPDANTLLAVYDHCLRSRNKINVIVASK----QPRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVP 635 (793)
T ss_pred eEecCCCCcchhhhhhHHhhccCceEEEEecC----CCcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcc
Confidence 9999999999999999999974 344443344 23332211 001112221 11111 12 47999999987
Q ss_pred HHHHHHHHHHHHhcC--CCeeEEE---eccccC
Q 018167 250 LSIMEQACLDAEKEG--ISCELID---LKTLIP 277 (360)
Q Consensus 250 ~~~al~Aa~~L~~~G--i~v~Vi~---~~~ikP 277 (360)
+-++++|+..|++++ +.++||+ +..+.|
T Consensus 636 t~e~laAa~~L~e~~p~l~vRvVnVvdl~rLq~ 668 (793)
T COG3957 636 TIEVLAAAQILREEGPELRVRVVNVVDLMRLQP 668 (793)
T ss_pred hHHHHHHHHHHHHhCccceEEEEEEecchhccC
Confidence 688999999999998 7776655 455544
No 59
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.10 E-value=1.3e-05 Score=73.88 Aligned_cols=116 Identities=20% Similarity=0.153 Sum_probs=79.3
Q ss_pred EEechhHHHHHHHHHHHHhcCCCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCc
Q 018167 88 VFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQ 167 (360)
Q Consensus 88 ~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~ 167 (360)
.+--.-+|..+++++.|.|+.|.|.++. |-+.=+..+.|.|-. ++..+ +|+ .+++..++|...+..++..+
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~-ts~~Gl~lm~e~l~~-a~~~~------~P~-V~~~~~R~g~~~g~~~~~~q 108 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTA-TSGPGLNLMAEPLYW-AAGTE------LPI-VIVVVQRAGPSPGLSTQPEQ 108 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEE-EECCHHHHHCCCHHH-HHHTT--------E-EEEEEEB---SSSB--SB-S
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEe-ecCCcccccHhHHHH-HHHcC------CCE-EEEEEECCCCCCCCcCcCCh
Confidence 4555679999999999999999999998 466666677787764 56555 466 56666777655434344469
Q ss_pred hHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecccccc
Q 018167 168 SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLY 213 (360)
Q Consensus 168 ~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~l~ 213 (360)
.|.-..+.. ++.|+.|+|++|+..+...|++ +..||+++.+..+.
T Consensus 109 ~D~~~~~d~-~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~ 157 (230)
T PF01855_consen 109 DDLMAARDS-GWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC 157 (230)
T ss_dssp HHHHHTTTS-S-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC
T ss_pred hHHHHHHhc-CeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh
Confidence 999888854 5779999999999999998887 48999997766544
No 60
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.20 E-value=0.01 Score=51.95 Aligned_cols=152 Identities=16% Similarity=0.231 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCC-CEEEEcCCCCCC----Cccccchh-HH-HHh--------CCCcEEechhHHHHHHHHHHHHhcC
Q 018167 44 SAINQALHIALETDP-RAYVFGEDVGFG----GVFRCTTG-LA-DRF--------GKSRVFNTPLCEQGIVGFAIGLAAM 108 (360)
Q Consensus 44 ~a~~~~L~~l~~~~~-~vv~i~~Dl~~g----~~~~~~~~-~~-~~~--------gp~r~i~~GIaE~~~vg~AaGlA~~ 108 (360)
.++++-|.++++.|+ ++.+.++|=..+ .+|..++. +. +.. .+++-+..-++|..+.|...|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467788888888777 689999995421 22322222 11 111 1234444558999999999999999
Q ss_pred CCeeEEEecCcccH---HHHHHHH----HHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC-chHHHHH-cCC-CC
Q 018167 109 GNRAIAEIQFADYI---FPAFDQI----VNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAFF-CHV-PG 178 (360)
Q Consensus 109 G~~p~~~~~f~~F~---~ra~dQi----~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs-~~d~a~~-r~i-Pn 178 (360)
|.+-++. +|-.|+ .-++.|- ++ .....|+.. .+...++.+...---++.|-+|+ -.-+..+ .-. .-
T Consensus 82 Grhglf~-sYEAF~~ivdsM~~Qh~Kwl~~-~~~~~wR~~--~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~ 157 (179)
T PF03894_consen 82 GRHGLFA-SYEAFAHIVDSMLNQHAKWLRH-ARELPWRAP--IPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDV 157 (179)
T ss_dssp T-EEEEE-EEGGGGGGGHHHHHHHHHHHHH-HHH-TTS-----B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-
T ss_pred CCccccc-ccchhHHHHHHHHHHHHHHHHH-HHhCcCCCC--CcceeEEeeccceecCCCCcccCCChHHHHHHhcCccc
Confidence 9999998 588885 3333332 21 122334321 12213443332333456788885 4444333 333 35
Q ss_pred cEEEeeCCHHHHHHHHHHhHh
Q 018167 179 LKVVIPRSPRQAKGLLLSCIR 199 (360)
Q Consensus 179 ~~V~~P~d~~e~~~~l~~a~~ 199 (360)
+.||.|.|++-+.+++..|++
T Consensus 158 ~RvylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 158 VRVYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp EEEEE-SSHHHHHHHHHHHHH
T ss_pred ceeecCCcHhHHHHHHHHHhc
Confidence 799999999999999998875
No 61
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.19 E-value=0.02 Score=49.35 Aligned_cols=111 Identities=22% Similarity=0.180 Sum_probs=71.4
Q ss_pred CCcEEechhHHHHHHHHHHHHhcCCCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCC--C
Q 018167 85 KSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG--G 162 (360)
Q Consensus 85 p~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~--g 162 (360)
.-+++.+- .|++.+.+|.|.++.|.+.++. +..+-+..+.+.+.+ +...+ .|+ +++++.....+.+ .
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~-~~gpG~~n~~~~l~~-a~~~~------~P~--v~i~g~~~~~~~~~~~ 109 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTA-TSGPGLNLMAEALYL-AAGAE------LPL--VIVVAQRPGPSTGLPK 109 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEe-eCcchHHHHHHHHHH-HHhCC------CCE--EEEEeeCCCCCCCCCC
Confidence 36888887 9999999999999998884444 567767778888775 33222 244 2223322222222 1
Q ss_pred CCCC-chHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC----CCCEEEec
Q 018167 163 HYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVFFE 208 (360)
Q Consensus 163 ~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~----~~P~~i~~ 208 (360)
..|+ +....+++. -.-++.+.+++|+..+++.|++. ++|+++++
T Consensus 110 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 110 PDQSDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred cCcHHHHHHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 1222 222333333 56788899999998888888762 68999954
No 62
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.84 E-value=0.015 Score=49.83 Aligned_cols=113 Identities=22% Similarity=0.219 Sum_probs=72.4
Q ss_pred CcEEechhHHHHHHHHHHHHhcCCC-eeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMGN-RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY 164 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G~-~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~ 164 (360)
-|++.+ ..|++++.+|.|.++.+. .+++..+..+=+..+.+.|.+ +...+ .|+ +++.+..+....+..+
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~-A~~~~------~Pl--l~i~~~~~~~~~~~~~ 104 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN-AYLDS------IPL--LVITGQRPTAGEGRGA 104 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH-HHhhC------CCE--EEEeCCCccccccCCc
Confidence 477776 499999999999999854 455554556666677777764 33333 344 2233322222222222
Q ss_pred CC-chHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEecc
Q 018167 165 HS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEP 209 (360)
Q Consensus 165 Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~i~~~ 209 (360)
|+ .....+++.+-.. .+.+.+++|+...+..|++ . ++|+||..|
T Consensus 105 ~q~~d~~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 105 FQEIDQVALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred ccccCHHHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 33 5556777777654 6777888888888888776 2 589999544
No 63
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=96.59 E-value=0.019 Score=56.58 Aligned_cols=125 Identities=18% Similarity=0.133 Sum_probs=76.6
Q ss_pred HHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHH-hcccccCCCccccceEEEcCCC
Q 018167 79 LADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAA-KFRYRSGNQFNCGGLTVRAPYG 156 (360)
Q Consensus 79 ~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a-~~~~~~~~~~~v~~~v~~~~~g 156 (360)
+.++.++.|++-+- .|.+.||+|+|+.+. |.+|++.+|-+.+ ..+.+.+. +++ ..-| .+|+ .+++..+|-
T Consensus 20 ~~~~~~~~~~i~~~-~E~~av~iaaG~~latG~~~~v~mQnSGl-Gn~vN~l~-SL~~~~~y----~iP~-l~~i~~RG~ 91 (361)
T TIGR03297 20 ITDNNRDLRHVIAA-NEGAAVGLAAGAYLATGKRAAVYMQNSGL-GNAVNPLT-SLADTEVY----DIPL-LLIVGWRGE 91 (361)
T ss_pred HHhcCCCceEEecC-CchHHHHHHHHHHHhcCCccEEEEecCch-hhhhhHHH-hhcccccc----CcCe-eEEEecCCC
Confidence 33355234677664 899999999999999 9999999876664 34545443 121 1112 2577 566666655
Q ss_pred CCCCCCCCCC-chH--HHHHc--CCCCcEEEeeCCHHHHHHHHH----HhHhCCCCEEEecccccc
Q 018167 157 AVGHGGHYHS-QSP--EAFFC--HVPGLKVVIPRSPRQAKGLLL----SCIRDPNPVVFFEPKWLY 213 (360)
Q Consensus 157 ~~g~~g~~Hs-~~d--~a~~r--~iPn~~V~~P~d~~e~~~~l~----~a~~~~~P~~i~~~k~l~ 213 (360)
....+-+.|. +-. ..+|. .||...+ |.+..|....+. .+.+.+.|+.++.+|+..
T Consensus 92 ~g~~depqh~~~G~~t~~lL~~~~i~~~~~--~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 92 PGVHDEPQHVKQGRITLSLLDALEIPWEVL--STDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred CCCCCCchhhHHhHHHHHHHHHcCCCEEEC--CCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 4335667773 222 35554 4554322 455655555444 444568999999888754
No 64
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.36 E-value=0.029 Score=49.11 Aligned_cols=157 Identities=20% Similarity=0.154 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEe-cCc
Q 018167 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-QFA 119 (360)
Q Consensus 41 ~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~-~f~ 119 (360)
+..+++.+.|.+. .=+.++.-++.. .....+.+.+.-| -|++.+ -.|++++.+|.|.|+.+-+|-+.+ +..
T Consensus 2 t~~~~l~~~L~~~---Gv~~vfgvpG~~---~~~l~~al~~~~~-i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~~G 73 (172)
T PF02776_consen 2 TGAEALAEALKAN---GVTHVFGVPGSG---NLPLLDALEKSPG-IRFIPV-RHEQGAAFMADGYARATGRPGVVIVTSG 73 (172)
T ss_dssp EHHHHHHHHHHHT---T-SEEEEE--GG---GHHHHHHHHHTTT-SEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETT
T ss_pred cHHHHHHHHHHHC---CCeEEEEEeChh---HhHHHHHhhhhcc-eeeecc-cCcchhHHHHHHHHHhhccceEEEeecc
Confidence 4455666665542 333344333322 1112334444422 578886 599999999999999866666554 333
Q ss_pred ccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC-CCCCCC-CchHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 018167 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG-HGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (360)
Q Consensus 120 ~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g-~~g~~H-s~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a 197 (360)
+=+..+..-|.+ +...+ .|+ +++++..+... ..+..| ..+...+++.+-.. .+.+.++.++...++.|
T Consensus 74 pG~~n~~~~l~~-A~~~~------~Pv--l~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A 143 (172)
T PF02776_consen 74 PGATNALTGLAN-AYADR------IPV--LVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRA 143 (172)
T ss_dssp HHHHTTHHHHHH-HHHTT-------EE--EEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHH
T ss_pred cchHHHHHHHhh-cccce------eeE--EEEecccchhhhcccccccchhhcchhccccch-hcccCCHHHHHHHHHHH
Confidence 322333333332 22222 354 22333322222 235555 46667888887644 66667777766666665
Q ss_pred Hh-----CCCCEEEecccccccc
Q 018167 198 IR-----DPNPVVFFEPKWLYRL 215 (360)
Q Consensus 198 ~~-----~~~P~~i~~~k~l~r~ 215 (360)
++ .++|+||..|..+.+.
T Consensus 144 ~~~a~~~~~gPv~l~ip~dv~~~ 166 (172)
T PF02776_consen 144 FRAATSGRPGPVYLEIPQDVQEA 166 (172)
T ss_dssp HHHHHHCSTSEEEEEEEHHHHTS
T ss_pred HHHhccCCCccEEEEcChhHhhC
Confidence 54 4899999887765443
No 65
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=95.99 E-value=0.54 Score=48.63 Aligned_cols=152 Identities=14% Similarity=0.020 Sum_probs=84.5
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCC--CcEEechhHHHHHHHHHHHHhcCCCeeEEEe-
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGK--SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI- 116 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp--~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~- 116 (360)
.+..+++.+.|.+.. -+.++.+-.|- ...|.+.+ + =||+.+ -.|++++.+|.|.|+..-+|-+++
T Consensus 12 ~~~a~~l~~~L~~~G--V~~vFgiPG~~--------~~~l~dal-~~~i~~i~~-~hE~~A~~~Adgyar~tg~~~v~~v 79 (530)
T PRK07092 12 TTVRDATIDLLRRFG--ITTVFGNPGST--------ELPFLRDF-PDDFRYVLG-LQEAVVVGMADGYAQATGNAAFVNL 79 (530)
T ss_pred CcHHHHHHHHHHHcC--CCEEEeCCCCc--------chHHHHHH-hhcCCEEEE-ccHHHHHHHHHHHHHHhCCceEEEe
Confidence 455566666555432 23344443331 23333333 2 378866 599999999999999754555543
Q ss_pred cCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCCCC-CCchHHHHHcCCCCcEEEeeCCHHHHHHH
Q 018167 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGHY-HSQSPEAFFCHVPGLKVVIPRSPRQAKGL 193 (360)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g~~-Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~ 193 (360)
+..+-+..++.-|.+ |+.+ .+ |+++........ ..+.+ |......+++.+-..... ..+++++...
T Consensus 80 t~gpG~~N~~~gia~--A~~~-------~~-Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~-v~~~~~~~~~ 148 (530)
T PRK07092 80 HSAAGVGNAMGNLFT--AFKN-------HT-PLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIE-PARAEDVPAA 148 (530)
T ss_pred ccCchHHHHHHHHHH--Hhhc-------CC-CEEEEecCCcccccCccchhcccCHHHhhcccccceee-cCCHHHHHHH
Confidence 344434455444443 2211 23 455443222221 12232 334556888887765443 3667777776
Q ss_pred HHHhHh----C-CCCEEEeccccccc
Q 018167 194 LLSCIR----D-PNPVVFFEPKWLYR 214 (360)
Q Consensus 194 l~~a~~----~-~~P~~i~~~k~l~r 214 (360)
++.|++ . +|||||-.|..+..
T Consensus 149 i~~A~~~A~~~~~GPv~l~iP~d~~~ 174 (530)
T PRK07092 149 IARAYHIAMQPPRGPVFVSIPYDDWD 174 (530)
T ss_pred HHHHHHHHhcCCCCcEEEEccHHHhh
Confidence 766665 3 58999988876543
No 66
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=95.94 E-value=0.42 Score=50.05 Aligned_cols=118 Identities=17% Similarity=0.180 Sum_probs=71.3
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEc-CCCCCC-CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAVG-HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~-~~g~~g-~~g 162 (360)
=|++.+- .|++++.+|.|.|+. |...++..+..+=+..++.-|-+ |+.. .+ |+++.. ...... ..+
T Consensus 40 i~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gla~--A~~~-------~~-Pvl~I~g~~~~~~~~~~ 108 (579)
T TIGR03457 40 IRFIPVV-HEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIAA--AYWA-------HT-PVVIVTPEAGTKTIGLG 108 (579)
T ss_pred CeEEEec-cHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHH--Hhhc-------CC-CEEEEeCCCccccCCCC
Confidence 4788774 999999999999986 65555544666655555444443 2211 22 444443 222211 123
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecccccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRL 215 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~l~r~ 215 (360)
.++......+++.+--. .....++.++...++.|++ .+|||||-.|..+...
T Consensus 109 ~~Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~~ 164 (579)
T TIGR03457 109 GFQEADQLPMFQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYFYG 164 (579)
T ss_pred CCcccchhhhhhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchhhh
Confidence 34445666788876543 4445677777766666654 4799999888766443
No 67
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=95.64 E-value=0.4 Score=50.15 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecC
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f 118 (360)
.+..+.+.+.|.+.. -..|+.+-.+-. ...++.+.+ . +-+++.+ ..|++++.+|.|+|+. |...++..++
T Consensus 16 ~~~~~~i~~~L~~~G--v~~vFg~pG~~~----~~l~~al~~-~-~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~ 86 (571)
T PRK07710 16 MTGAQMLIEALEKEG--VEVIFGYPGGAV----LPLYDALYD-C-GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATS 86 (571)
T ss_pred chHHHHHHHHHHHcC--CCEEEeCCCcch----HHHHHHHHh-c-CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 444555555554321 244554444311 112334432 3 4688877 8999999999999997 5444444466
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCCC-CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG-HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~g-~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~ 196 (360)
.+=+.-++.-|.+ |+.. .+ |+++. +...... ..+..+..+..++++.+--. .+...++.++..+++.
T Consensus 87 GPG~~N~~~gl~~--A~~~-------~~-Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~ 155 (571)
T PRK07710 87 GPGATNVVTGLAD--AMID-------SL-PLVVFTGQVATSVIGSDAFQEADIMGITMPVTKH-NYQVRKASDLPRIIKE 155 (571)
T ss_pred CccHHHHHHHHHH--Hhhc-------CC-CEEEEeccCCccccCCCCccccchhhhhhcccce-EEecCCHHHHHHHHHH
Confidence 6655555555543 2221 22 44444 3222111 12334446667888877654 3345667777777776
Q ss_pred hHh----C-CCCEEEecccccc
Q 018167 197 CIR----D-PNPVVFFEPKWLY 213 (360)
Q Consensus 197 a~~----~-~~P~~i~~~k~l~ 213 (360)
|++ . +|||||-.|..+.
T Consensus 156 A~~~A~~~~~GPV~l~iP~Dv~ 177 (571)
T PRK07710 156 AFHIATTGRPGPVLIDIPKDMV 177 (571)
T ss_pred HHHHHhcCCCCcEEEEcChhHh
Confidence 665 2 5999998887653
No 68
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=95.62 E-value=0.23 Score=51.46 Aligned_cols=170 Identities=14% Similarity=0.106 Sum_probs=96.3
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCCC-CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG-HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~g-~~g 162 (360)
=|++.+- .|++++.+|-|.|+. |...++..++.+-+..++.-|.+ |+.+ .+ |+++. +...... ..+
T Consensus 37 i~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~~--A~~~-------~~-Pvl~I~G~~~~~~~~~~ 105 (539)
T TIGR02418 37 IELIVVR-HEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLAT--ANSE-------GD-PVVAIGGQVKRADLLKL 105 (539)
T ss_pred CCEEEeC-cHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHHH--Hhhc-------CC-CEEEEeCCCcccccccC
Confidence 4788875 999999999999986 54455444677766566555553 3222 22 44433 3222111 234
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEeccccccccCccc--CCCC-CcccCC-Cc--
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYRLSVEE--VPED-DYMLPL-SE-- 231 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~i~~~k~l~r~~~~~--v~~~-~~~~~~-Gk-- 231 (360)
.+|.+.+.++++.+--. .....++.++...++.|++ . +|||||-.|..+.....+. .+.. ...... ..
T Consensus 106 ~~q~~d~~~~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (539)
T TIGR02418 106 THQSMDNVALFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVVDSPVSVKAIPASYAPKLGAAPDDA 184 (539)
T ss_pred cccccchhhhhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHhhCcccccccCcccCCCCCCCCHHH
Confidence 46667788889987653 4445677777776666654 2 6899998888764433211 1100 000000 00
Q ss_pred ----eEEeee-CCcEEEEEechhHHHHHHHHHHHHhc-CCCe
Q 018167 232 ----AEVIRE-GSDITLVGWGAQLSIMEQACLDAEKE-GISC 267 (360)
Q Consensus 232 ----~~vl~~-G~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v 267 (360)
+..+++ .+-++|++.|.....+.++..+|.+. |+.+
T Consensus 185 i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv 226 (539)
T TIGR02418 185 IDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPV 226 (539)
T ss_pred HHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCE
Confidence 011233 34566667776555566666666543 5543
No 69
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=95.60 E-value=0.47 Score=49.83 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=87.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecC
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f 118 (360)
++..+++.+.|.++. -+.|+.+-.+-- ...++.+. +-+ =|++.+ -.|++++.+|.|.|+. |...++..++
T Consensus 6 ~~~~~~l~~~L~~~G--V~~vFGvpG~~~----~~l~dal~-~~~-i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~ 76 (588)
T PRK07525 6 MTPSEAFVETLQAHG--ITHAFGIIGSAF----MDASDLFP-PAG-IRFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQN 76 (588)
T ss_pred ccHHHHHHHHHHHcC--CCEEEEeCCCch----HHHHHHHh-ccC-CCEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 344555555554431 244555544411 11123332 222 477777 4999999999999987 6555555566
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~ 196 (360)
.+=+..++.-|.+ |+.+ .+ |+++........ ..+.++..+...+++.+-.. .+...++.++...++.
T Consensus 77 GPG~~n~~~gi~~--A~~~-------~~-Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~i~~~~~~~~~i~r 145 (588)
T PRK07525 77 GPGITNFVTAVAT--AYWA-------HT-PVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKY-QEEVRDPSRMAEVLNR 145 (588)
T ss_pred CccHHHHHHHHHH--Hhhc-------CC-CEEEEeCCCCcccCCCCCCcccchhhhhhhheeE-EEECCCHHHHHHHHHH
Confidence 6655555554443 2222 22 444443221111 12233445667788876543 4555677777766666
Q ss_pred hHh----CCCCEEEecccccccc
Q 018167 197 CIR----DPNPVVFFEPKWLYRL 215 (360)
Q Consensus 197 a~~----~~~P~~i~~~k~l~r~ 215 (360)
|++ .++||||-.|..+...
T Consensus 146 A~~~A~~~~GPV~i~iP~Dv~~~ 168 (588)
T PRK07525 146 VFDKAKRESGPAQINIPRDYFYG 168 (588)
T ss_pred HHHHHhcCCCCEEEEcChhHhhh
Confidence 654 5899999888766443
No 70
>PRK12474 hypothetical protein; Provisional
Probab=95.60 E-value=2.4 Score=43.72 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=88.4
Q ss_pred CcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEe
Q 018167 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEI 116 (360)
Q Consensus 38 ~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~ 116 (360)
.+++..+++.+.|.++. -+.|+.+-.|.. ....+.+.+ .+.=|++.+- -|++++.+|-|.|+. |..-++..
T Consensus 3 ~~~~~~~~l~~~L~~~G--V~~vFGvpG~~~----~~l~dal~~-~~~i~~i~~r-hE~~A~~mAdgYaR~tg~~gv~~~ 74 (518)
T PRK12474 3 QTMNGADSVVDTLLNCG--VEVCFANPGTSE----MHFVAALDR-VPRMRPVLCL-FEGVVTGAADGYGRIAGKPAVTLL 74 (518)
T ss_pred cCccHHHHHHHHHHHCC--CCEEEECCCcch----HHHHHHhhc-cCCceEEEec-chHHHHHHHHHHHHHhCCCEEEEE
Confidence 34555666666665532 344555544421 111223322 2123788874 999999999999997 54444444
Q ss_pred cCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCC--CCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHH
Q 018167 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (360)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~--~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l 194 (360)
++.+=...++--+-+ |+.. .+ |+++......... .+.++.....++++.+--. .....++.++..++
T Consensus 75 t~GpG~~N~~~gl~~--A~~d-------~~-Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i 143 (518)
T PRK12474 75 HLGPGLANGLANLHN--ARRA-------AS-PIVNIVGDHAVEHLQYDAPLTSDIDGFARPVSRW-VHRSASAGAVDSDV 143 (518)
T ss_pred ccchhHhHhHHHHHH--Hhhc-------CC-CEEEEeccCchhhcCCCCccccCHHHhhhcccce-eeecCCHHHHHHHH
Confidence 666654444444432 2222 22 4444332211111 1222334455778866533 44568888888888
Q ss_pred HHhHh-----CCCCEEEeccccccc
Q 018167 195 LSCIR-----DPNPVVFFEPKWLYR 214 (360)
Q Consensus 195 ~~a~~-----~~~P~~i~~~k~l~r 214 (360)
+.|++ ..+||||-.|+.+..
T Consensus 144 ~rA~~~A~~~~~GPV~l~iP~Dv~~ 168 (518)
T PRK12474 144 ARAVQAAQSAPGGIATLIMPADVAW 168 (518)
T ss_pred HHHHHHHhcCCCCcEEEEechhhhc
Confidence 88875 259999988887643
No 71
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=95.58 E-value=0.22 Score=43.42 Aligned_cols=114 Identities=17% Similarity=0.056 Sum_probs=70.6
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g 162 (360)
=|++.+ -.|+++..+|-|.|.. |...++..+..+=+..++.-+.+ +...+ . |+++........ ..+
T Consensus 39 i~~v~~-rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~-A~~~~------~---Pvl~I~g~~~~~~~~~~ 107 (164)
T cd07039 39 IEFIQV-RHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYD-AKRDR------A---PVLAIAGQVPTDELGTD 107 (164)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHH-HHhcC------C---CEEEEecCCcccccCCC
Confidence 366665 5999999999999997 54444333566655555555553 22222 2 444443222211 223
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKW 211 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~ 211 (360)
.+|......+++.+-.. ...+.++.++...++.|++ .++||||-.|..
T Consensus 108 ~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 108 YFQEVDLLALFKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred CCcccCHHHHHHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 34456777888887764 5666788888777777765 379999965553
No 72
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.53 E-value=0.74 Score=48.18 Aligned_cols=116 Identities=18% Similarity=0.094 Sum_probs=74.3
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCCC-CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG-HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~g-~~g 162 (360)
=|++.+ -.|++++.+|.|.|+. |...++..++.+-+..+..-|.+ |+.. .+ |+++. +...... ..+
T Consensus 43 i~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~~--A~~~-------~~-Pvl~i~G~~~~~~~~~~ 111 (574)
T PRK07979 43 IDHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIAT--AYMD-------SI-PLVVLSGQVATSLIGYD 111 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHHHH--Hhhc-------CC-CEEEEECCCChhccCCC
Confidence 377776 4999999999999986 76666665677766555554543 2221 22 44443 3222111 123
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEecccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~i~~~k~l~ 213 (360)
.+|.++..++++.+-.. .....+++++...++.|++ .+||+||-.|..+.
T Consensus 112 ~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 166 (574)
T PRK07979 112 AFQECDMVGISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDIL 166 (574)
T ss_pred CCceecHHHHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 34446667788876553 4455688888888888776 26999998887654
No 73
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=95.49 E-value=0.69 Score=48.19 Aligned_cols=118 Identities=14% Similarity=0.044 Sum_probs=73.4
Q ss_pred CcEEechhHHHHHHHHHHHHhcCCCeeEEE-ecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCC--CCCCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA--VGHGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~--~g~~g 162 (360)
=|++.+ -.|++++.+|.|.|+..-+|-++ .++.+-+..++.-|.+ |+.+ .+ |+++...... ....+
T Consensus 47 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi~~--A~~~-------~~-Pvl~i~g~~~~~~~~~~ 115 (557)
T PRK08199 47 IRVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGVHT--AFQD-------ST-PMILFVGQVARDFRERE 115 (557)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHH--Hhhc-------CC-CEEEEecCCccccCCCC
Confidence 467777 59999999999999985444443 4677766566555553 3222 23 5554432221 11233
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEecccccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYRL 215 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~i~~~k~l~r~ 215 (360)
..|.+...++++.+-.. .....++.++...++.|++ . +|||||-.|..+...
T Consensus 116 ~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl~~~ 172 (557)
T PRK08199 116 AFQEIDYRRMFGPMAKW-VAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLSE 172 (557)
T ss_pred cccccCHHHhhhhhhce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHhhC
Confidence 44556667888876554 3344678887777777665 3 699999888776543
No 74
>PRK08322 acetolactate synthase; Reviewed
Probab=95.49 E-value=0.32 Score=50.44 Aligned_cols=118 Identities=13% Similarity=0.053 Sum_probs=73.2
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEc-CCCCCC-CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAVG-HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~-~~g~~g-~~g 162 (360)
=|++.+ ..|++++.+|.|.|+. |...++..+..+=+..++.-|.+ +-.. .+ |+++.. ...... ..+
T Consensus 39 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~~-A~~~--------~~-Pll~i~g~~~~~~~~~~ 107 (547)
T PRK08322 39 IKLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAY-AQLG--------GM-PMVAITGQKPIKRSKQG 107 (547)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHHHH-Hhhc--------CC-CEEEEeccccccccCCC
Confidence 477777 5999999999999997 54444444566655555555543 2222 23 444433 211111 122
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecccccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLYRL 215 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~i~~~k~l~r~ 215 (360)
.++.....++++.+-.. .+...+++++..+++.|++. +|||||-.|..+...
T Consensus 108 ~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~ 164 (547)
T PRK08322 108 SFQIVDVVAMMAPLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIAAE 164 (547)
T ss_pred ccccccHHHHhhhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhhhC
Confidence 33335667888877643 56677888887777777652 689999888876543
No 75
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.45 E-value=0.58 Score=48.94 Aligned_cols=116 Identities=14% Similarity=0.074 Sum_probs=72.2
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g 162 (360)
=|++.+ -.|++++.+|-|+|+. |...++..++.+=+..++.-|.+ |+.. .+ |+++........ ..+
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl~~--A~~~-------~~-Pvl~i~G~~~~~~~~~~ 111 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGIAT--AYMD-------SI-PMVVLSGQVPSTLIGED 111 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH--HHhc-------CC-CEEEEecCCCccccCCC
Confidence 467776 5999999999999987 54444444676655555555543 2222 22 444443221111 123
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~i~~~k~l~ 213 (360)
.++.++...+++.+--. .....++.++..+++.|+.. +|||||-.|..+.
T Consensus 112 ~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv~ 166 (574)
T PRK06466 112 AFQETDMVGISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDMT 166 (574)
T ss_pred cccccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHh
Confidence 34446667788887654 45556777777777766652 6999998888753
No 76
>PRK07524 hypothetical protein; Provisional
Probab=95.43 E-value=1.1 Score=46.49 Aligned_cols=117 Identities=20% Similarity=0.141 Sum_probs=74.1
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCC--CCCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA--VGHG 161 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~--~g~~ 161 (360)
=|++.+ -.|++++.+|-|.|+. |...++..+..+=+..++.-|.+ +...+ . |+++. +.... .+.+
T Consensus 40 i~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi~~-A~~~~------~---Pvl~i~G~~~~~~~~~~ 108 (535)
T PRK07524 40 IRHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAMGQ-AYADS------I---PMLVISSVNRRASLGKG 108 (535)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH-HHhcC------C---CEEEEeCCCChhhcCCC
Confidence 377777 4999999999999997 44445554667655556555553 22222 3 44433 32111 1221
Q ss_pred -CCCCC-chHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEeccccccc
Q 018167 162 -GHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYR 214 (360)
Q Consensus 162 -g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~i~~~k~l~r 214 (360)
+.+|+ .....+++.+-- -.+...+++++...++.|++ . +|||||-.|+.+..
T Consensus 109 ~~~~~~~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~ 167 (535)
T PRK07524 109 RGKLHELPDQRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVLA 167 (535)
T ss_pred CccccccccHHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhHHh
Confidence 34454 466788887754 35667778888887777775 2 69999988876643
No 77
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=95.37 E-value=0.37 Score=50.08 Aligned_cols=117 Identities=14% Similarity=0.050 Sum_probs=70.7
Q ss_pred CcEEechhHHHHHHHHHHHHhcCCCeeEEE-ecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g 162 (360)
=|++.+ -.|++++.+|.|+|+..-+|-++ .+..+=+..++.-+-+ |+.+ .+ |+++....-... ..+
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~~--A~~~-------~~-Pvl~i~G~~~~~~~~~~ 108 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGLYD--AKMD-------HA-PVIALTGQVESDMIGHD 108 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHHH--HHhc-------CC-CEEEEecCCCccccCCC
Confidence 466666 59999999999999985555554 3566655555554442 2221 22 445443211111 122
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYR 214 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~l~r 214 (360)
+++.++...+++.+--. .....++.++...++.|++ .+|||+|-.|..+..
T Consensus 109 ~~q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv~~ 163 (549)
T PRK06457 109 YFQEVNLTKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVDILR 163 (549)
T ss_pred cccccchhhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhHhh
Confidence 33445667888876543 4556667777666666654 479999988877644
No 78
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.35 E-value=0.56 Score=40.60 Aligned_cols=112 Identities=17% Similarity=0.195 Sum_probs=60.6
Q ss_pred CcEEechhHHHHHHHHHHHHhcCCCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH 165 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~H 165 (360)
-||+- .-.|...+++|+|.++.|.+|.++++-+. ...+..-+.. +. +.+. .|+ -++ ++.-|..+...+.|
T Consensus 35 i~~i~-~~~ee~aa~~aAg~~~~~~~~~v~~~~sG-~gn~~~~l~~-a~-~~~~----~Pv-l~i-~g~rg~~~~~~~~q 104 (157)
T TIGR03845 35 FRHIP-LTREEEGVGICAGAYLAGKKPAILMQSSG-LGNSINALAS-LN-KTYG----IPL-PIL-ASWRGVYKEKIPAQ 104 (157)
T ss_pred CcEEe-cCChHHHHHHHHHHHHhcCCcEEEEeCCc-HHHHHHHHHH-HH-HcCC----CCE-EEE-EeccCCCCCCCccc
Confidence 45553 35888999999999999999988864333 3345555542 22 1111 355 232 32222222211111
Q ss_pred ---CchHHHHHc--CCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecccc
Q 018167 166 ---SQSPEAFFC--HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKW 211 (360)
Q Consensus 166 ---s~~d~a~~r--~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~ 211 (360)
..-....+. .+| .....+++|+ ..++.|++ .++|++|+.++.
T Consensus 105 ~~~g~~~~~~l~~~~i~---~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 105 IPMGRATPKLLDTLGIP---YTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred cchhhhhHHHHHHcCCC---eEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 111112222 334 5555667777 76666664 479999977764
No 79
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=95.26 E-value=0.85 Score=47.51 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=72.7
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g 162 (360)
=|++.+- .|++++.+|.|.|+. |...++..++.+=+..++.-|.+ +...+ . |+++........ ..+
T Consensus 40 i~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i~~-A~~~~------~---Pvl~i~g~~~~~~~~~~ 108 (558)
T TIGR00118 40 IEHILVR-HEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGIAT-AYMDS------I---PMVVFTGQVPTSLIGSD 108 (558)
T ss_pred ceEEEeC-cHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHH-HHhcC------C---CEEEEecCCCccccCCC
Confidence 3888875 999999999999986 54555555677766556555543 22222 3 444333221111 122
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~i~~~k~l~ 213 (360)
.++..+..++++.+--. .....++.++..+++.|++. ++||||-.|..+.
T Consensus 109 ~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv~ 163 (558)
T TIGR00118 109 AFQEADILGITMPITKH-SFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVT 163 (558)
T ss_pred CCcccChhhhhcCccce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhhh
Confidence 33345566788876554 34446788888888877763 6999998887653
No 80
>PRK07064 hypothetical protein; Provisional
Probab=95.26 E-value=1.3 Score=45.98 Aligned_cols=116 Identities=19% Similarity=0.093 Sum_probs=71.6
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCC---CCCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA---VGHG 161 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~---~g~~ 161 (360)
=|++.+ ..|++++.+|.|+|+. |...++..+..+=+..++.-|.+ +...+ . |+++...... .+.+
T Consensus 42 i~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i~~-A~~~~------~---Pvl~i~g~~~~~~~~~~ 110 (544)
T PRK07064 42 IRFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGALVE-ALTAG------T---PLLHITGQIETPYLDQD 110 (544)
T ss_pred ccEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHHHH-HHhcC------C---CEEEEeCCCCcccccCC
Confidence 377776 5999999999999987 54455444667655555555553 22222 2 4444332111 1222
Q ss_pred -CCCCC-chHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEecccccc
Q 018167 162 -GHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (360)
Q Consensus 162 -g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~i~~~k~l~ 213 (360)
+.+|+ .+...+++.+-.. .+...++.++..+++.|++ . ++||||-.|..+.
T Consensus 111 ~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv~ 168 (544)
T PRK07064 111 LGYIHEAPDQLTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDIQ 168 (544)
T ss_pred CcccccccCHHHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhHh
Confidence 23454 5778888877654 4455677777766666664 3 7999998887653
No 81
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=95.03 E-value=1.4 Score=46.60 Aligned_cols=160 Identities=13% Similarity=0.013 Sum_probs=88.1
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHH--hCCCcEEechhHHHHHHHHHHHHhcC-CCeeE
Q 018167 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADR--FGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAI 113 (360)
Q Consensus 37 ~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~--~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~ 113 (360)
..+++..+++.+.|.+.. -+.|+.+-.+.- ....+.+.+. -+.=||+.+ -.|++++.+|.|.|+. |...+
T Consensus 16 ~~~~~~~~~l~~~L~~~G--V~~vFgipG~~~----~~l~dal~~~~~~~~i~~i~~-rhE~~Aa~aA~gyar~tgk~gv 88 (616)
T PRK07418 16 PQRATGAYALMDSLKRHG--VKHIFGYPGGAI----LPIYDELYKAEAEGWLKHILV-RHEQGAAHAADGYARATGKVGV 88 (616)
T ss_pred CccccHHHHHHHHHHHcC--CCEEEeCcCcch----HHHHHHHHhcccCCCceEEEe-ccHHHHHHHHHHHHHHhCCCeE
Confidence 344555566665555421 244555444311 1123444321 112478888 6999999999999997 54444
Q ss_pred EEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHH
Q 018167 114 AEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAK 191 (360)
Q Consensus 114 ~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~ 191 (360)
+..+..+=+.-++.-|.+ +...+ + |+++........ ..+..|.+....+++.+--. .....+++++.
T Consensus 89 ~~~t~GPG~~n~l~gl~~-A~~d~--------~-Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~-~~~v~~~~~i~ 157 (616)
T PRK07418 89 CFGTSGPGATNLVTGIAT-AQMDS--------V-PMVVITGQVPRPAIGTDAFQETDIFGITLPIVKH-SYVVRDPSDMA 157 (616)
T ss_pred EEECCCccHHHHHHHHHH-HHhcC--------C-CEEEEecCCCccccCCCCcccccHHHHhhhccee-EEEeCCHHHHH
Confidence 444566655555544442 22222 2 444443222211 12233345556777765422 33467888888
Q ss_pred HHHHHhHh----C-CCCEEEeccccccc
Q 018167 192 GLLLSCIR----D-PNPVVFFEPKWLYR 214 (360)
Q Consensus 192 ~~l~~a~~----~-~~P~~i~~~k~l~r 214 (360)
.+++.|++ . +||+||-.|..+..
T Consensus 158 ~~l~~A~~~A~~~~~GPv~l~iP~Dv~~ 185 (616)
T PRK07418 158 RIVAEAFHIASSGRPGPVLIDIPKDVGQ 185 (616)
T ss_pred HHHHHHHHHHhcCCCCcEEEecchhhhh
Confidence 77777766 3 59999988876543
No 82
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=94.98 E-value=0.85 Score=47.67 Aligned_cols=155 Identities=15% Similarity=0.062 Sum_probs=86.5
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecC
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f 118 (360)
.+..+++.+.|.+.. -+.|+.+-.+-. ...++.+.+.- .=||+.+ -.|++++.+|.|.|+. |...++.+++
T Consensus 10 ~~~~~~i~~~L~~~G--v~~vFgipG~~~----~~l~dal~~~~-~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~ 81 (566)
T PRK07282 10 KSGSDLVLETLRDLG--VDTIFGYPGGAV----LPLYDAIYNFE-GIRHILA-RHEQGALHEAEGYAKSTGKLGVAVVTS 81 (566)
T ss_pred CcHHHHHHHHHHHcC--CCEEEecCCcch----HHHHHHHhhcC-CceEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 344455555544321 244555544421 11233443221 1388888 4999999999999987 6555555567
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEEcCC-CCCC-CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY-GAVG-HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~-g~~g-~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~ 196 (360)
.+=+..++.-|.+ |+.+ .+ |+++.... .... ..+.+|..+..++++.+-... ....++.++..+++.
T Consensus 82 GPG~~n~~~gla~--A~~~-------~~-Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s-~~v~~~~~~~~~l~~ 150 (566)
T PRK07282 82 GPGATNAITGIAD--AMSD-------SV-PLLVFTGQVARAGIGKDAFQEADIVGITMPITKYN-YQIRETADIPRIITE 150 (566)
T ss_pred CccHHHHHHHHHH--Hhhc-------CC-CEEEEecccccccCCCCCccccChhchhcCCCcee-EEcCCHHHHHHHHHH
Confidence 7755555555543 2222 22 44444322 2111 122334455667777765543 344577777777777
Q ss_pred hHhC-----CCCEEEecccccc
Q 018167 197 CIRD-----PNPVVFFEPKWLY 213 (360)
Q Consensus 197 a~~~-----~~P~~i~~~k~l~ 213 (360)
|++. ++||||-.|..+.
T Consensus 151 A~~~A~~~~~GPV~l~iP~Dv~ 172 (566)
T PRK07282 151 AVHIATTGRPGPVVIDLPKDVS 172 (566)
T ss_pred HHHHHhcCCCCeEEEeCChhhh
Confidence 6653 5999998887654
No 83
>PRK08266 hypothetical protein; Provisional
Probab=94.91 E-value=1.2 Score=46.07 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=86.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCee-EEEecC
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQF 118 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p-~~~~~f 118 (360)
++..+++.+.|.++. -..|+.+-.+ . ....++.+.+.-+.=|++.+ ..|++++.+|-|+|+..-+| ++..+.
T Consensus 4 ~~~~~~l~~~L~~~G--v~~vFg~pG~-~---~~~l~~al~~~~~~i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~ 76 (542)
T PRK08266 4 MTGGEAIVAGLVAHG--VDTVFGLPGA-Q---LYWLFDALYKAGDRIRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVP 76 (542)
T ss_pred CcHHHHHHHHHHHcC--CCEEEECCCc-c---hHHHHHHHHhcCCCCeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 445566666665432 2334433222 1 11123344332112477777 59999999999999974444 443466
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCC---CCCC-CCCCC-chHHHHHcCCCCcEEEeeCCHHHHHHH
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA---VGHG-GHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGL 193 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~---~g~~-g~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~ 193 (360)
.+=+..++.-+.+ +...+ . |+++...... .+.+ +.+|. .....+++.+--. .....++.++...
T Consensus 77 GpG~~N~~~gi~~-A~~~~------~---Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~ 145 (542)
T PRK08266 77 GPGVLNAGAALLT-AYGCN------S---PVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTKW-AERIEHPSEAPAL 145 (542)
T ss_pred CCcHHHHHHHHHH-HHhhC------C---CEEEEecCCChhhccCCCCcceecccHhhHHhhhcce-EEEeCCHHHHHHH
Confidence 7655555555543 22222 2 4444432111 1222 23454 3566888877553 4555667777777
Q ss_pred HHHhHh-----CCCCEEEeccccccc
Q 018167 194 LLSCIR-----DPNPVVFFEPKWLYR 214 (360)
Q Consensus 194 l~~a~~-----~~~P~~i~~~k~l~r 214 (360)
++.|++ .+|||||-.|..+..
T Consensus 146 l~~A~~~a~~~~~GPV~l~iP~dv~~ 171 (542)
T PRK08266 146 VAEAFQQMLSGRPRPVALEMPWDVFG 171 (542)
T ss_pred HHHHHHHHhhCCCCcEEEEeCHhHhh
Confidence 666664 269999988876543
No 84
>PRK05858 hypothetical protein; Provisional
Probab=94.80 E-value=0.97 Score=46.92 Aligned_cols=116 Identities=15% Similarity=0.036 Sum_probs=72.1
Q ss_pred CcEEechhHHHHHHHHHHHHhcCCCeeEEE-ecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g 162 (360)
=||+.+ -.|++++.+|-|.|+..-+|-++ .++.+=+..+..-|.+ +...+ . |+++........ ..+
T Consensus 43 i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i~~-A~~~~------~---Pvl~i~g~~~~~~~~~~ 111 (542)
T PRK05858 43 IRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAMAA-AQFNQ------S---PLVVLGGRAPALRWGMG 111 (542)
T ss_pred CCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHHHH-HHhcC------C---CEEEEeCCCCcccCCCC
Confidence 588888 49999999999999985455444 3555544445444443 22222 2 445443222221 223
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEecccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~i~~~k~l~ 213 (360)
.+|..+..++++.+--. .....++.++...++.|++ . +|||||-.|..+.
T Consensus 112 ~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 166 (542)
T PRK05858 112 SLQEIDHVPFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHA 166 (542)
T ss_pred CCcccchhhhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhhh
Confidence 44445566788877653 5556778888777777664 2 6899998887654
No 85
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=94.75 E-value=0.93 Score=39.12 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=62.6
Q ss_pred CCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCC
Q 018167 84 GKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG 161 (360)
Q Consensus 84 gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~ 161 (360)
.|.+|+..| +=...++.|.|+++.--+|++++ -.+ |++-.-+ +- -++..+ . .|+ .+|+...+++...+
T Consensus 34 ~~~~~~~~g-smG~~lp~AiGa~~a~~~~Vv~i-~GDG~f~m~~~e-l~-t~~~~~-~----~~i-~~vV~nN~~~g~~~ 103 (157)
T cd02001 34 RDGHFYMLG-SMGLAGSIGLGLALGLSRKVIVV-DGDGSLLMNPGV-LL-TAGEFT-P----LNL-ILVVLDNRAYGSTG 103 (157)
T ss_pred CCCCEEeec-chhhHHHHHHHHHhcCCCcEEEE-ECchHHHhcccH-HH-HHHHhc-C----CCE-EEEEEeCccccccC
Confidence 388998755 22233447777776644788886 444 4333222 22 122221 1 356 56655554432111
Q ss_pred C-CCCC-chHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 162 G-HYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 162 g-~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
+ .++. .-|++-+..-=|+.-+...+++|+..+++.+++.++|++|
T Consensus 104 ~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~gp~vi 150 (157)
T cd02001 104 GQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLATTGPTLL 150 (157)
T ss_pred CcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHhCCCCEEE
Confidence 1 1221 2333322221245556668999999999999999999988
No 86
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=94.69 E-value=1.5 Score=45.84 Aligned_cols=116 Identities=16% Similarity=0.045 Sum_probs=71.3
Q ss_pred CcEEechhHHHHHHHHHHHHhcCCCeeEE-EecCcccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCCC-CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIA-EIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG-HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G~~p~~-~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~g-~~g 162 (360)
=|++.+ ..|++++.+|.|+|+..-+|-+ ..++.+=+..++.-|.+ +...+ . |+++. +...... ..+
T Consensus 52 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl~~-A~~~~------~---Pvl~i~G~~~~~~~~~~ 120 (564)
T PRK08155 52 IRHILA-RHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIAD-ARLDS------I---PLVCITGQVPASMIGTD 120 (564)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHHHH-HHhcC------C---CEEEEeccCCcccccCC
Confidence 478885 6999999999999998555544 33677755556555553 33222 2 44433 3211111 223
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEecccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~i~~~k~l~ 213 (360)
..+.+...++++.+--. .....+++++..+++.|++ . +|||||-.|..+.
T Consensus 121 ~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv~ 175 (564)
T PRK08155 121 AFQEVDTYGISIPITKH-NYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDVQ 175 (564)
T ss_pred CccccchhhhhhccceE-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHH
Confidence 34445556777776544 2334578888777777765 2 5999998887654
No 87
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.62 E-value=1.5 Score=45.97 Aligned_cols=155 Identities=15% Similarity=0.019 Sum_probs=85.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecC
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f 118 (360)
++..+++.+.|.++ --+.|+.+-.+-- ....+.+.+.- .=|++.+ --|++++.+|-|.|+. |...++..++
T Consensus 21 ~~~a~~l~~~L~~~--GV~~vFgvpG~~~----~~l~dal~~~~-~i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~ 92 (587)
T PRK06965 21 SIGAEILMKALAAE--GVEFIWGYPGGAV----LYIYDELYKQD-KIQHVLV-RHEQAAVHAADGYARATGKVGVALVTS 92 (587)
T ss_pred ccHHHHHHHHHHHc--CCCEEEecCCcch----HHHHHHHhhcC-CCeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 44556666666542 1244555443311 11233443321 2478887 5999999999999997 5555555567
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~ 196 (360)
.+=+..+..-|.+ +... .+ |+++........ ..+..|.....++++.+--. .....+++++..+++.
T Consensus 93 GpG~~N~l~gl~~-A~~~--------~~-Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~ 161 (587)
T PRK06965 93 GPGVTNAVTGIAT-AYMD--------SI-PMVVISGQVPTAAIGQDAFQECDTVGITRPIVKH-NFLVKDVRDLAETVKK 161 (587)
T ss_pred CccHHHHHHHHHH-Hhhc--------CC-CEEEEecCCCccccCCCCcccccHHHHhcCCcce-eEEeCCHHHHHHHHHH
Confidence 7655555555543 2222 23 455443222221 12223335556777777543 4445566666666665
Q ss_pred hHh----C-CCCEEEecccccc
Q 018167 197 CIR----D-PNPVVFFEPKWLY 213 (360)
Q Consensus 197 a~~----~-~~P~~i~~~k~l~ 213 (360)
|++ . ++||||-.|..+.
T Consensus 162 A~~~A~~~~~GPV~l~iP~Dv~ 183 (587)
T PRK06965 162 AFYIARTGRPGPVVVDIPKDVS 183 (587)
T ss_pred HHHHHhcCCCCeEEEEeChhhh
Confidence 554 3 6999998887654
No 88
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=94.51 E-value=1.8 Score=45.25 Aligned_cols=155 Identities=13% Similarity=0.023 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEe-cCc
Q 018167 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-QFA 119 (360)
Q Consensus 41 ~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~-~f~ 119 (360)
+..+++.+.|.+.. -+.|+.+-.+-. ....+.+.+.-+ =|++.+ -.|++++.+|-|.|+..-+|-+++ +..
T Consensus 4 ~~a~~l~~~L~~~G--V~~vFg~pG~~~----~~l~dal~~~~~-i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~G 75 (574)
T PRK09124 4 TVADYIAKTLEQAG--VKRIWGVTGDSL----NGLSDSLRRMGT-IEWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCG 75 (574)
T ss_pred cHHHHHHHHHHHcC--CCEEEECCCCch----HHHHHHHhccCC-CcEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCC
Confidence 45555655555431 234454444411 112334432211 367766 399999999999999855665553 455
Q ss_pred ccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 018167 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (360)
Q Consensus 120 ~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a 197 (360)
+=...+..-|.+ |+.. .+ |+++........ ..+.++......+++.+--. .....+++++...++.|
T Consensus 76 pG~~n~~~gi~~--A~~~-------~~-Pvl~i~G~~~~~~~~~~~~Q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~A 144 (574)
T PRK09124 76 PGNLHLINGLFD--CHRN-------HV-PVLAIAAHIPSSEIGSGYFQETHPQELFRECSHY-CELVSNPEQLPRVLAIA 144 (574)
T ss_pred CCHHHHHHHHHH--Hhhc-------CC-CEEEEecCCccccCCCCCccccChhhhcccceee-eEEeCCHHHHHHHHHHH
Confidence 544444444443 2222 23 444433221111 22334446667888866433 23356666655555544
Q ss_pred ----HhCCCCEEEeccccccc
Q 018167 198 ----IRDPNPVVFFEPKWLYR 214 (360)
Q Consensus 198 ----~~~~~P~~i~~~k~l~r 214 (360)
...++||||-.|..+..
T Consensus 145 ~~~A~~~~gPV~l~iP~Dv~~ 165 (574)
T PRK09124 145 MRKAILNRGVAVVVLPGDVAL 165 (574)
T ss_pred HHHHhcCCCCEEEEeChhhhh
Confidence 44579999988876543
No 89
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=94.46 E-value=0.82 Score=48.03 Aligned_cols=117 Identities=13% Similarity=0.012 Sum_probs=71.4
Q ss_pred CcEEechhHHHHHHHHHHHHhcCC-CeeEEE-ecCcccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCC-CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMG-NRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAV-GHG 161 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G-~~p~~~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~-g~~ 161 (360)
=|++.+ --|++++.+|-|.|+.. .+|-++ .++.+=...++.-|.+ |+.. .+ |+++. +..... ...
T Consensus 42 i~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~--A~~~-------~~-Pvl~I~G~~~~~~~~~ 110 (588)
T TIGR01504 42 IRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYS--ASAD-------SI-PILCITGQAPRARLHK 110 (588)
T ss_pred CcEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHH--Hhhc-------CC-CEEEEecCCCccccCC
Confidence 367776 48999999999999964 555554 3566645455555543 2221 22 44443 322111 112
Q ss_pred CCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEeccccccc
Q 018167 162 GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYR 214 (360)
Q Consensus 162 g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~i~~~k~l~r 214 (360)
+.++.++..++++.+--. .....+++++..+++.|++ . +|||||-.|+.+..
T Consensus 111 ~~~q~~D~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~ 167 (588)
T TIGR01504 111 EDFQAVDIAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQV 167 (588)
T ss_pred CcccccCHHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchhh
Confidence 333445567888877543 3445678888888888776 2 58999988887643
No 90
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.45 E-value=1.8 Score=45.27 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=86.0
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCc
Q 018167 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFA 119 (360)
Q Consensus 41 ~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~ 119 (360)
+..+++.+.|.++. -+.|+.+-.|-- ....+.+.+.-| =|++.+ -.|++++.+|.|.|+. |...++..++.
T Consensus 5 ~~~~~l~~~L~~~G--v~~vFgvpG~~~----~~l~~al~~~~~-i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~G 76 (572)
T PRK08979 5 SGASMIVRSLIDEG--VKHIFGYPGGSV----LDIYDALHEKSG-IEHILV-RHEQAAVHMADGYARATGKVGVVLVTSG 76 (572)
T ss_pred cHHHHHHHHHHHcC--CCEEEEcCCcch----HHHHHHHhhcCC-CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 33455555554421 244555544421 112334433211 478887 5999999999999987 65555554666
Q ss_pred ccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCCC-CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 018167 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG-HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (360)
Q Consensus 120 ~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~g-~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a 197 (360)
+=...+..-|.+ |+.. .+ |+++. +...... ..+..|..+..++++.+--. .....+++++...++.|
T Consensus 77 pG~~n~l~gia~--A~~~-------~~-Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~-~~~v~~~~~~~~~l~~A 145 (572)
T PRK08979 77 PGATNTITGIAT--AYMD-------SI-PMVVLSGQVPSNLIGNDAFQECDMIGISRPVVKH-SFLVKDAEDIPEIIKKA 145 (572)
T ss_pred chHhHHHHHHHH--Hhhc-------CC-CEEEEecCCCccccCCCCCcccchhHHhhhceeE-EEecCCHHHHHHHHHHH
Confidence 655445444442 2221 22 44443 3222111 22334445566788876543 34455788887777777
Q ss_pred Hh-----CCCCEEEecccccc
Q 018167 198 IR-----DPNPVVFFEPKWLY 213 (360)
Q Consensus 198 ~~-----~~~P~~i~~~k~l~ 213 (360)
++ .++||||-.|..+.
T Consensus 146 ~~~A~~~~~GPV~l~iP~Dv~ 166 (572)
T PRK08979 146 FYIASTGRPGPVVIDLPKDCL 166 (572)
T ss_pred HHHHhCCCCCcEEEecCHhHh
Confidence 75 26999998887654
No 91
>PRK08617 acetolactate synthase; Reviewed
Probab=94.40 E-value=2 Score=44.67 Aligned_cols=156 Identities=12% Similarity=0.028 Sum_probs=89.0
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCe-eEEEecC
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNR-AIAEIQF 118 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~-p~~~~~f 118 (360)
++-.+++.+.|.+.. -+.|+.+..+-. ....+.+.+. + =|++.+ ..|++++.+|.|.|+..-+ .++..++
T Consensus 5 ~~~~~~l~~~L~~~G--V~~vFg~pG~~~----~~l~~al~~~-~-i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~vt~ 75 (552)
T PRK08617 5 KYGADLVVDSLINQG--VKYVFGIPGAKI----DRVFDALEDS-G-PELIVT-RHEQNAAFMAAAIGRLTGKPGVVLVTS 75 (552)
T ss_pred ccHHHHHHHHHHHcC--CCEEEeCCCccH----HHHHHHHhhC-C-CCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEECC
Confidence 444566666665432 234444433311 1123444332 2 578877 4999999999999998444 4444466
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCC-CCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAV-GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~-g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~ 196 (360)
.+=+..++.-+.+ +...+ . |+++. +..... ...+.+|.+....+++.+--. .+...++.++..+++.
T Consensus 76 GpG~~N~l~gl~~-A~~~~------~---PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~ 144 (552)
T PRK08617 76 GPGVSNLATGLVT-ATAEG------D---PVVAIGGQVKRADRLKRTHQSMDNVALFRPITKY-SAEVQDPDNLSEVLAN 144 (552)
T ss_pred CCcHhHhHHHHHH-HhhcC------C---CEEEEecCCcccccCCCCccccchhhhhhhhcce-EEEeCCHHHHHHHHHH
Confidence 6655555555543 22222 2 44433 321211 122345567777888887643 5555677887777777
Q ss_pred hHh----C-CCCEEEecccccccc
Q 018167 197 CIR----D-PNPVVFFEPKWLYRL 215 (360)
Q Consensus 197 a~~----~-~~P~~i~~~k~l~r~ 215 (360)
|++ . +|||||-.|..+...
T Consensus 145 A~~~a~~~~~GPV~l~iP~dv~~~ 168 (552)
T PRK08617 145 AFRAAESGRPGAAFVSLPQDVVDA 168 (552)
T ss_pred HHHHHccCCCCcEEEeChhhhhhc
Confidence 765 2 689999888765433
No 92
>PRK11269 glyoxylate carboligase; Provisional
Probab=94.39 E-value=1.4 Score=46.24 Aligned_cols=156 Identities=12% Similarity=-0.015 Sum_probs=86.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCC-CeeEE-Eec
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRAIA-EIQ 117 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G-~~p~~-~~~ 117 (360)
++..+++.+.|.+.. -+.|+.+-.+-. ....+.+.+.- .=|++.+ -.|++++.+|-|.|+.. -+|-+ ..+
T Consensus 4 ~~~~~~l~~~L~~~G--v~~vFg~pG~~~----~~l~dal~~~~-~i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t 75 (591)
T PRK11269 4 MRAVDAAVLVLEKEG--VTTAFGVPGAAI----NPFYSAMRKHG-GIRHILA-RHVEGASHMAEGYTRATAGNIGVCIGT 75 (591)
T ss_pred ccHHHHHHHHHHHcC--CCEEEeCCCccc----HHHHHHHhhcC-CCcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 444555555554321 234454433311 11234443321 1478888 59999999999999875 44443 336
Q ss_pred CcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 018167 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (360)
Q Consensus 118 f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~ 195 (360)
+.+-+..++.-+.+ |+.. .+ |+++........ ..+.++.+...++++.+--. .....++.++..+++
T Consensus 76 ~GPG~~N~l~gl~~--A~~~-------~~-Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~i~ 144 (591)
T PRK11269 76 SGPAGTDMITGLYS--ASAD-------SI-PILCITGQAPRARLHKEDFQAVDIESIAKPVTKW-AVTVREPALVPRVFQ 144 (591)
T ss_pred CCCcHHHHHHHHHH--Hhhc-------CC-CEEEEecCCCccccCCCcccccChhhHhhcceeE-EEEcCCHHHHHHHHH
Confidence 77755555544442 2221 22 444433221111 12233345567888876543 344577888888887
Q ss_pred HhHhC-----CCCEEEeccccccc
Q 018167 196 SCIRD-----PNPVVFFEPKWLYR 214 (360)
Q Consensus 196 ~a~~~-----~~P~~i~~~k~l~r 214 (360)
.|++. +|||||-.|..+..
T Consensus 145 ~A~~~A~~~~~GPV~l~iP~Dv~~ 168 (591)
T PRK11269 145 QAFHLMRSGRPGPVLIDLPFDVQV 168 (591)
T ss_pred HHHHHHhhCCCCeEEEEeChhhhh
Confidence 77662 58999988876543
No 93
>PRK07586 hypothetical protein; Validated
Probab=94.27 E-value=0.9 Score=46.76 Aligned_cols=170 Identities=15% Similarity=0.044 Sum_probs=90.3
Q ss_pred CcEEechhHHHHHHHHHHHHhcCCCeeE-EEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAI-AEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G~~p~-~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g 162 (360)
=|++.+ --|++++.+|.|.|+..-+|- +..++.+=+..+.--+.+ |+.. .+ |+++........ ..+
T Consensus 40 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~~--A~~~-------~~-Pvl~i~G~~~~~~~~~~ 108 (514)
T PRK07586 40 MRCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANLHN--ARRA-------RT-PIVNIVGDHATYHRKYD 108 (514)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHHHH--HHhc-------CC-CEEEEecCCchhccCCC
Confidence 377777 599999999999999744444 434566655455444443 2222 23 455443222111 122
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEeccccccccCccc--CCCC-CcccCCCc---
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYRLSVEE--VPED-DYMLPLSE--- 231 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~i~~~k~l~r~~~~~--v~~~-~~~~~~Gk--- 231 (360)
.++......+++.+-- -.+...++.++...++.|++ . ++||||-.|..+.....+. .+.. ........
T Consensus 109 ~~q~~d~~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v 187 (514)
T PRK07586 109 APLTSDIEALARPVSG-WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAV 187 (514)
T ss_pred cccccchhhhhccccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHH
Confidence 2333445567776642 24456667777666666654 3 6999998887654332210 0000 00000000
Q ss_pred ---eEEeee-CCcEEEEEechhHHHHHHHHHHHHhc-CCCe
Q 018167 232 ---AEVIRE-GSDITLVGWGAQLSIMEQACLDAEKE-GISC 267 (360)
Q Consensus 232 ---~~vl~~-G~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v 267 (360)
++.+++ .+-++|++.|.....+.++..+|.+. |+.+
T Consensus 188 ~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV 228 (514)
T PRK07586 188 EAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARL 228 (514)
T ss_pred HHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCE
Confidence 011222 34577777776556666666666554 6654
No 94
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.16 E-value=0.5 Score=41.15 Aligned_cols=111 Identities=20% Similarity=0.181 Sum_probs=61.8
Q ss_pred CcEEechhHHHHHHHHHHHHhcCCCeeEE-EecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCC-CC-CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIA-EIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-VG-HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G~~p~~-~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~-~g-~~g 162 (360)
=||+.+ -.|++++.+|-|.|+..-+|-+ ..+..+-+..+.--+.+ +...+ . |+++...... .. ..+
T Consensus 36 i~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~-A~~~~------~---Pvl~i~g~~~~~~~~~~ 104 (162)
T cd07037 36 FRLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE-AYYSG------V---PLLVLTADRPPELRGTG 104 (162)
T ss_pred ceEEec-cChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH-HHhcC------C---CEEEEECCCCHHhcCCC
Confidence 467776 4999999999999997444444 44566655555555543 22222 2 4444432222 21 223
Q ss_pred CCCCchHHHHHcCCCCc--EEEeeCC-------HHHHHHHHHHhHhC-CCCEEEe
Q 018167 163 HYHSQSPEAFFCHVPGL--KVVIPRS-------PRQAKGLLLSCIRD-PNPVVFF 207 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~--~V~~P~d-------~~e~~~~l~~a~~~-~~P~~i~ 207 (360)
.+|.++..++++.+-.. +|-.|.+ +..+..+++.|... +||++|-
T Consensus 105 ~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~ 159 (162)
T cd07037 105 ANQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLN 159 (162)
T ss_pred CCcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence 34446667777776533 2333443 33344444444443 6999993
No 95
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.11 E-value=1.3 Score=46.21 Aligned_cols=116 Identities=12% Similarity=0.043 Sum_probs=70.5
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g 162 (360)
=+++.+ -.|++++.+|-|.|+. |...++..++.+=+.-++.-|.+ +...+ + |+++........ ..+
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl~~-A~~~~--------~-Pvl~i~G~~~~~~~~~~ 114 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGIAT-AYMDS--------V-PIVALTGQVPRSMIGND 114 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHH-HhhcC--------C-CEEEEeccCCccccCCC
Confidence 578888 5999999999999987 64444444677766556555553 22222 2 444433221111 122
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEecccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~i~~~k~l~ 213 (360)
..|..+..++++.+--. .+.-.++.++..+++.|++ .++||||-.|..+.
T Consensus 115 ~~q~~d~~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 169 (561)
T PRK06048 115 AFQEADITGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDVT 169 (561)
T ss_pred CccccchhhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhhh
Confidence 33334455667766432 2335677887777777766 26999998887653
No 96
>PRK08611 pyruvate oxidase; Provisional
Probab=94.10 E-value=1.4 Score=46.14 Aligned_cols=158 Identities=13% Similarity=0.009 Sum_probs=89.1
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecC
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f 118 (360)
.+..+++.+.|.+.. -+.|+.+-.+-. ....+.+.+.-..=|++.+ ..|++++.+|.|+|+. |...++..++
T Consensus 4 ~~~~~~l~~~L~~~G--V~~vFgipG~~~----~~l~dal~~~~~~i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~ 76 (576)
T PRK08611 4 IKAGEALVKLLQDWG--IDHVYGIPGDSI----DAVVDALRKEQDKIKFIQV-RHEEVAALAAAAYAKLTGKIGVCLSIG 76 (576)
T ss_pred CcHHHHHHHHHHHcC--CCEEEecCCcch----HHHHHHHHhcCCCCeEEEe-CcHHHHHHHHHHHHHHhCCceEEEECC
Confidence 455666666665432 244555544421 1123444332111477775 6899999999999986 5444444456
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCC-CCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAV-GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~-g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~ 196 (360)
.+=+..++.-|.+ |+.. .+ |+++. +..... -..+..|.+....+++.+--. .....+++++...++.
T Consensus 77 GPG~~N~l~gla~--A~~~-------~~-Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~l~~ 145 (576)
T PRK08611 77 GPGAIHLLNGLYD--AKMD-------HV-PVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVY-NHQIMSAENLPEIVNQ 145 (576)
T ss_pred CCcHHHHHHHHHH--Hhhc-------CC-CEEEEecCCcccccCCCCccccCHHHHhhcccce-eEEeCCHHHHHHHHHH
Confidence 6655555555543 3222 23 44444 322211 123344445667888887544 3456677777776666
Q ss_pred hHh----CCCCEEEecccccccc
Q 018167 197 CIR----DPNPVVFFEPKWLYRL 215 (360)
Q Consensus 197 a~~----~~~P~~i~~~k~l~r~ 215 (360)
|++ .++||||-.|..+...
T Consensus 146 A~~~A~~~~GPV~l~iP~Dv~~~ 168 (576)
T PRK08611 146 AIRTAYEKKGVAVLTIPDDLPAQ 168 (576)
T ss_pred HHHHHhhCCCCEEEEeChhhhhc
Confidence 554 4799999888876543
No 97
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=93.99 E-value=1 Score=47.01 Aligned_cols=116 Identities=13% Similarity=0.049 Sum_probs=70.9
Q ss_pred cEEechhHHHHHHHHHHHHhcCCCeeEEE-ecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEc-CCCCCC-CCCC
Q 018167 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAVG-HGGH 163 (360)
Q Consensus 87 r~i~~GIaE~~~vg~AaGlA~~G~~p~~~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~-~~g~~g-~~g~ 163 (360)
|++.+ ..|++++.+|.|+|+..-+|-++ .++.+-+.-++.-|.+ |+.. .+ |+++.. ...... ..+.
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi~~--A~~~-------~~-Pvl~i~G~~~~~~~~~~~ 113 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGLIT--AYWD-------SS-PVIAITGQVPRSVMGKMA 113 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHHH--HHhh-------CC-CEEEEecCCCccccCCCC
Confidence 67766 59999999999999974444444 3677766666655553 2222 23 444443 222111 1223
Q ss_pred CCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEeccccccc
Q 018167 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (360)
Q Consensus 164 ~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~i~~~k~l~r 214 (360)
+|.....++++.+--. .+...+++++...++.|++ .+|||||-.|..+..
T Consensus 114 ~q~~d~~~i~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~ 168 (572)
T PRK06456 114 FQEADAMGVFENVTKY-VIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIFY 168 (572)
T ss_pred ccccchhhhhhcccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhHhh
Confidence 3445556788877654 3334677787777776665 269999988876543
No 98
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.94 E-value=1.2 Score=46.62 Aligned_cols=154 Identities=14% Similarity=0.034 Sum_probs=87.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecC
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f 118 (360)
++..+++.+.|.++. -+.|+.+-.+-. ...++.+.+. .-||+.+ -.|++++.+|-|.|+. |...++..++
T Consensus 15 ~~~a~~l~~~L~~~G--V~~vFGipG~~~----~~l~dal~~~--~i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~ 85 (570)
T PRK06725 15 VTGAGHVIQCLKKLG--VTTVFGYPGGAI----LPVYDALYES--GLKHILT-RHEQAAIHAAEGYARASGKVGVVFATS 85 (570)
T ss_pred ccHHHHHHHHHHHcC--CCEEEEcCCcch----HHHHHHHHhc--CCcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 444555555554321 244555544411 1123344332 2478887 4999999999999986 5444544467
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCCC-CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG-HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~g-~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~ 196 (360)
.+=+..++.-|-+ |+.. .+ |+++. +...... ..+..|......+++.+--. .+...+++++..+++.
T Consensus 86 GpG~~N~~~gla~--A~~~-------~~-Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~-~~~v~~~~~i~~~l~~ 154 (570)
T PRK06725 86 GPGATNLVTGLAD--AYMD-------SI-PLVVITGQVATPLIGKDGFQEADVVGITVPVTKH-NYQVRDVNQLSRIVQE 154 (570)
T ss_pred CccHHHHHHHHHH--Hhhc-------Cc-CEEEEecCCCcccccCCCCcccchhhhhhcccee-EEEcCCHHHHHHHHHH
Confidence 7765555554443 2211 22 44433 3222111 12233345556778877543 3445688888888888
Q ss_pred hHhC-----CCCEEEecccccc
Q 018167 197 CIRD-----PNPVVFFEPKWLY 213 (360)
Q Consensus 197 a~~~-----~~P~~i~~~k~l~ 213 (360)
|+.. +|||||-.|..+.
T Consensus 155 A~~~A~s~~~GPV~l~iP~Dv~ 176 (570)
T PRK06725 155 AFYIAESGRPGPVLIDIPKDVQ 176 (570)
T ss_pred HHHHHhcCCCCcEEEccccchh
Confidence 7763 6999998887654
No 99
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=93.92 E-value=0.87 Score=48.06 Aligned_cols=117 Identities=14% Similarity=0.052 Sum_probs=73.2
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g 162 (360)
=+++.+ -.|++++.+|.|+|+. |...++..+..+=+..++.-|.+ +...+ . |+++........ ..+
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~-A~~~~------~---PllvI~G~~~~~~~~~~ 138 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPIAD-ANMDS------V---PVVAITGQVGRGLIGTD 138 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH-HhhcC------C---CEEEEecCCCccccCCC
Confidence 467776 6999999999999997 65555444667655555555543 22222 2 444443222111 123
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEeccccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLYR 214 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~i~~~k~l~r 214 (360)
..|.++..++++.+--. .+...+++++..+++.|+.. +|||||-.|..+.+
T Consensus 139 ~~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~ 194 (612)
T PRK07789 139 AFQEADIVGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDALQ 194 (612)
T ss_pred cCcccchhhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccchhh
Confidence 34445666788877643 34557888888888777752 69999988876644
No 100
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=93.87 E-value=0.72 Score=48.18 Aligned_cols=118 Identities=13% Similarity=0.019 Sum_probs=72.9
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC----C
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG----H 160 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g----~ 160 (360)
=|++.+- .|++++.+|.|.|+. |...++..+..+-+..+..-|.+ +...+ . |+++........ .
T Consensus 48 i~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~-A~~~~------~---Pvl~I~G~~~~~~~~~~ 116 (569)
T PRK09259 48 IRYIGFR-HEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN-ATTNC------F---PMIMISGSSEREIVDLQ 116 (569)
T ss_pred CCEEeeC-CHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH-HHhcC------C---CEEEEEccCCccccccc
Confidence 5788874 999999999999997 55445444667766556555553 22222 2 444333221111 1
Q ss_pred CCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEecccccccc
Q 018167 161 GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYRL 215 (360)
Q Consensus 161 ~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~i~~~k~l~r~ 215 (360)
.+.++.....++++.+-.. .+...++.++...++.|+. . +|||||-.|..+...
T Consensus 117 ~~~~q~~d~~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~ 175 (569)
T PRK09259 117 QGDYEELDQLNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLAQ 175 (569)
T ss_pred CCCccccchhhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHHhhC
Confidence 1223335666888877654 4455678887776666665 2 699999888776543
No 101
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.67 E-value=3.7 Score=42.88 Aligned_cols=116 Identities=16% Similarity=0.057 Sum_probs=70.6
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g 162 (360)
=|++.+ -.|++++.+|-|.|+. |...++..+..+=+..++.-|.+ +-.. .+ |+++........ ..+
T Consensus 43 i~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~~-A~~~--------~~-Pvlvi~G~~~~~~~~~~ 111 (574)
T PRK06882 43 IEHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGIAT-AYTD--------SV-PLVILSGQVPSNLIGTD 111 (574)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHHHH-Hhhc--------CC-CEEEEecCCCccccCCC
Confidence 378777 5999999999999997 54444444566655555555543 2211 23 455443222211 122
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEecccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~i~~~k~l~ 213 (360)
..+.++...+++.+-.. .....++.++...++.|++ .+|||||-.|..+.
T Consensus 112 ~~q~~d~~~l~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (574)
T PRK06882 112 AFQECDMLGISRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDMV 166 (574)
T ss_pred cccccchhhhhhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHHh
Confidence 33445566777776542 4455677777777766665 26999998887653
No 102
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=93.62 E-value=2.4 Score=44.38 Aligned_cols=116 Identities=14% Similarity=0.060 Sum_probs=68.9
Q ss_pred cEEechhHHHHHHHHHHHHhcCCCe-eEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCC---C-
Q 018167 87 RVFNTPLCEQGIVGFAIGLAAMGNR-AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH---G- 161 (360)
Q Consensus 87 r~i~~GIaE~~~vg~AaGlA~~G~~-p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~---~- 161 (360)
|++.+= -|++++.+|-|.|+..-+ .++..+..+=+..+..-|-+ |+.+ .+ |+++......... +
T Consensus 52 ~~V~~r-hE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gla~--A~~d-------~~-Pvl~I~G~~~~~~~~~~~ 120 (569)
T PRK08327 52 EFVICP-HEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGVHN--AARS-------RI-PVLVFAGRSPYTEEGELG 120 (569)
T ss_pred cEEecC-CHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHHHH--Hhhc-------CC-CEEEEeccCCcccccccc
Confidence 788874 899999999999998444 44343566655555554442 2221 22 4443332221111 1
Q ss_pred ---C---CCCC-chHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEeccccccc
Q 018167 162 ---G---HYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYR 214 (360)
Q Consensus 162 ---g---~~Hs-~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~i~~~k~l~r 214 (360)
- .+|. +...++++.+-.. .+...+++++...++.|+. . ++||||-.|..+..
T Consensus 121 ~~~~~~~~~qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv~~ 184 (569)
T PRK08327 121 SRNTRIHWTQEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREVLA 184 (569)
T ss_pred ccccCcccchhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHHHh
Confidence 1 1222 2445777766543 4566777888777777665 2 79999988876543
No 103
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=93.49 E-value=1.2 Score=46.54 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=71.4
Q ss_pred CcEEechhHHHHHHHHHHHHhcCCCeeEEE-ecCcccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCC-CCCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAV-GHGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~-g~~g 162 (360)
=+++.+ ..|++++.+|.|.|+..-+|-++ .+..+-+..++.-|.+ |+.. .+ |+++. +..... ...+
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl~~--A~~~-------~~-Pvl~I~G~~~~~~~~~~ 118 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPLAE--ALKA-------SV-PIVALVQDVNRDQTDRN 118 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHHHH--Hhhc-------CC-CEEEEecCCccccCCCC
Confidence 577777 49999999999999974444444 3566666555555553 3222 22 44433 321111 1223
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEecccccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYRL 215 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~i~~~k~l~r~ 215 (360)
..|.++...+++.+--. .....+++++...++.|++ . +||+||-.|..+...
T Consensus 119 ~~Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv~~~ 175 (578)
T PRK06112 119 AFQELDHIALFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLLTA 175 (578)
T ss_pred CccccChhhhhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhHhhC
Confidence 34445667888887653 4455667777666666654 3 599999888776443
No 104
>PLN02573 pyruvate decarboxylase
Probab=93.47 E-value=2 Score=45.14 Aligned_cols=155 Identities=14% Similarity=0.058 Sum_probs=81.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecC
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f 118 (360)
.+..+++.+.|.+.. -+.|+.+-.+.- ....+.+.+.- .=+++.+ --|++++.+|-|.|+. | .+++..++
T Consensus 16 ~~~a~~l~~~L~~~G--v~~vFGvpG~~~----~~l~dal~~~~-~i~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~ 86 (578)
T PLN02573 16 ATLGRHLARRLVEIG--VTDVFSVPGDFN----LTLLDHLIAEP-GLNLIGC-CNELNAGYAADGYARARG-VGACVVTF 86 (578)
T ss_pred ccHHHHHHHHHHHcC--CCEEEECCCCch----HHHHHHHhhcC-CceEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEec
Confidence 445556665555431 345565544411 11123332211 1356666 5899999999999986 7 77766667
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCC--CCCCCC-CCCc------hHHHHHcCCCCcEEEeeCCHH
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA--VGHGGH-YHSQ------SPEAFFCHVPGLKVVIPRSPR 188 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~--~g~~g~-~Hs~------~d~a~~r~iPn~~V~~P~d~~ 188 (360)
.+=..-+..-+-+ |+.+ .+ |+++. +.... .+.++. ||.+ .+.++++.+--. .....+++
T Consensus 87 GpG~~n~~~gla~--A~~d-------~~-Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~-s~~v~~~~ 155 (578)
T PLN02573 87 TVGGLSVLNAIAG--AYSE-------NL-PVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCY-QAVINNLE 155 (578)
T ss_pred CccHHHHHHHHHH--HHHh-------CC-CEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEE-EEEeCCHH
Confidence 7655455444443 2222 12 44443 32111 122332 3321 234666665432 33344555
Q ss_pred HHHHHH----HHhHhCCCCEEEeccccccc
Q 018167 189 QAKGLL----LSCIRDPNPVVFFEPKWLYR 214 (360)
Q Consensus 189 e~~~~l----~~a~~~~~P~~i~~~k~l~r 214 (360)
++...+ +.|+..++||||-.|..+..
T Consensus 156 ~~~~~l~~A~~~A~~~~gPV~l~iP~Dv~~ 185 (578)
T PLN02573 156 DAHELIDTAISTALKESKPVYISVSCNLAA 185 (578)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeehhhhc
Confidence 555444 44444589999988887644
No 105
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.44 E-value=1.5 Score=45.63 Aligned_cols=116 Identities=13% Similarity=0.059 Sum_probs=71.4
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEc-CCCCCC-CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGAVG-HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~-~~g~~g-~~g 162 (360)
=|++.+ ..|++++.+|-|.|+. |...++..++.+=+..++.-+.+ +-..+ . |+++.. ...... ..+
T Consensus 39 i~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~~-A~~~~------~---Pvl~i~g~~~~~~~~~~ 107 (548)
T PRK08978 39 VEHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLAD-ALLDS------V---PVVAITGQVSSPLIGTD 107 (548)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHH-HhhcC------C---CEEEEecCCCccccCCC
Confidence 477777 6999999999999997 54444444677765555555553 22222 2 444443 222111 122
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEecccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~i~~~k~l~ 213 (360)
.++.++..++++.+--... ...+++++..+++.|++ . ++||||-.|..+.
T Consensus 108 ~~q~~d~~~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 162 (548)
T PRK08978 108 AFQEIDVLGLSLACTKHSF-LVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDIQ 162 (548)
T ss_pred CCcccchhccccCceeeEE-EECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhhh
Confidence 3334555677787765433 33578888877777775 2 5999998887654
No 106
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.11 E-value=1.4 Score=46.03 Aligned_cols=176 Identities=19% Similarity=0.180 Sum_probs=99.0
Q ss_pred hhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEE-cC
Q 018167 77 TGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-AP 154 (360)
Q Consensus 77 ~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~ 154 (360)
+.|.+. + -||+.+ --||.++.+|.|.|+. |..-+|-.+..+=...+..-|-+ |+++ .+ |+++. +.
T Consensus 33 dal~~~-~-i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgla~--A~~d-------~~-Pll~itGq 99 (550)
T COG0028 33 DALYDS-G-IRHILV-RHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGLAD--AYMD-------SV-PLLAITGQ 99 (550)
T ss_pred HHHHhC-C-CcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHH--HHhc-------CC-CEEEEeCC
Confidence 344444 2 588887 5999999999999997 54444444555555444444442 3332 22 44544 32
Q ss_pred CCCCC-CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEeccccccccCcccCC-----CC
Q 018167 155 YGAVG-HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLYRLSVEEVP-----ED 223 (360)
Q Consensus 155 ~g~~g-~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~i~~~k~l~r~~~~~v~-----~~ 223 (360)
..... +-+.+|..+..++++.+--. .+...+++|+-..++.|++. +||++|-.|+-+.....+... ..
T Consensus 100 v~~~~~g~~afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~~~~~~~~~~~~~~~~ 178 (550)
T COG0028 100 VPTSLIGTDAFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILP 178 (550)
T ss_pred ccccccCcchhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHhhcccccccccccccc
Confidence 22221 23344456667788877644 56677888888888887762 599999888876554321110 01
Q ss_pred CcccCCCc-------eEEeeeC-CcEEEEEechhHHHHHHHHHHHHhc-CCC
Q 018167 224 DYMLPLSE-------AEVIREG-SDITLVGWGAQLSIMEQACLDAEKE-GIS 266 (360)
Q Consensus 224 ~~~~~~Gk-------~~vl~~G-~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~ 266 (360)
.+...... ++.+.+. +-+++++.|.....|.+...+|.+. |+-
T Consensus 179 ~~~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~P 230 (550)
T COG0028 179 PYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAP 230 (550)
T ss_pred cCCCCCCcHHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCC
Confidence 11111111 1122333 3466666666666666777776543 443
No 107
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.85 E-value=3.1 Score=43.53 Aligned_cols=116 Identities=8% Similarity=-0.046 Sum_probs=67.7
Q ss_pred CcEEechhHHHHHHHHHHHHhcCCCe-eEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCC-CC-CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMGNR-AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-VG-HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G~~-p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~-~g-~~g 162 (360)
=||+.+ --|++++.+|-|.|...-+ .++..++.+=+..+..-|.+ |+.+ .+ |+++...... .. ..+
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~--A~~~-------~~-Pvl~I~G~~~~~~~~~~ 107 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYD--AKED-------HV-PVLALVGQVPTTGMNMD 107 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHH--Hhhc-------CC-CEEEEecCCccccCCCC
Confidence 467777 4899999999999987444 44444666655555555543 2222 22 4444432222 21 223
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHH----hHhCCCCEEEecccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS----CIRDPNPVVFFEPKWLY 213 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~----a~~~~~P~~i~~~k~l~ 213 (360)
.+|.+...++++.+--. .....+++++...++. |...++||||-.|..+.
T Consensus 108 ~~q~id~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 161 (575)
T TIGR02720 108 TFQEMNENPIYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDFG 161 (575)
T ss_pred CcceechhhhhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcchh
Confidence 34445556777766432 2344556655554444 44458999998887654
No 108
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.66 E-value=2.1 Score=45.02 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=72.4
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g 162 (360)
=||+.+ --|++++.+|-|.|+. |...++..++.+=+..+..-|-+ |+.. .+ |+++........ ..+
T Consensus 50 i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gia~--A~~~-------~~-Pvl~i~G~~~~~~~~~~ 118 (595)
T PRK09107 50 IQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATNAVTPLQD--ALMD-------SI-PLVCITGQVPTHLIGSD 118 (595)
T ss_pred CeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhHHHHHHHH--Hhhc-------CC-CEEEEEcCCChhhcCCC
Confidence 478888 5999999999999976 65555555677755555554443 2222 23 445443222111 123
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~i~~~k~l~ 213 (360)
.+|.....++++.+--. .+...++.++..+++.|++. +|||||-.|..+.
T Consensus 119 ~~q~~d~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 173 (595)
T PRK09107 119 AFQECDTVGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDVQ 173 (595)
T ss_pred CCcccchhhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCChh
Confidence 34445556777765432 34457788888888877763 6999998887653
No 109
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=92.46 E-value=2.6 Score=40.21 Aligned_cols=144 Identities=10% Similarity=0.003 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHH---HHHHHHHHHHhcCC-CeeEEEe
Q 018167 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCE---QGIVGFAIGLAAMG-NRAIAEI 116 (360)
Q Consensus 41 ~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE---~~~vg~AaGlA~~G-~~p~~~~ 116 (360)
....++.++|.++.-..++.+ +..|++-.+ +. | ++++..--- -..+.+|.|+++.. -++++++
T Consensus 11 ~i~~~~~~a~~~l~~~p~d~i-ivsdiGc~~----------~~-~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai 77 (287)
T TIGR02177 11 GILSALQRALAELNLDPEQVV-VVSGIGCSA----------KT-P-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVV 77 (287)
T ss_pred HHHHHHHHHHHHhcCCCCCEE-EEECCCccc----------cc-C-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEE
Confidence 345677888887765445554 445766211 12 4 555543211 23556778877764 4677775
Q ss_pred cCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC--C-CCC-CC----------CC-------chHHHHH
Q 018167 117 QFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--G-HGG-HY----------HS-------QSPEAFF 173 (360)
Q Consensus 117 ~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~--g-~~g-~~----------Hs-------~~d~a~~ 173 (360)
-.+ |..-....+.+ ++..+ .|+ .+|+.....+. + ..- ++ +. ...+++.
T Consensus 78 -~GDG~f~~mg~~eL~t-A~r~n------l~I-~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A 148 (287)
T TIGR02177 78 -GGDGDLYGIGGNHFVA-AGRRN------VDI-TVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIA 148 (287)
T ss_pred -eCchHHHhccHHHHHH-HHHhC------cCe-EEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHh
Confidence 444 32233344443 45444 466 55555443321 1 110 00 00 0112333
Q ss_pred cCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 174 CHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 174 r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
....-.-.....++.|+..+++.|+++++|++|
T Consensus 149 ~g~g~va~~~~~~~~eL~~ai~~Al~~~GpslI 181 (287)
T TIGR02177 149 LGYTFVARGFSGDVAHLKEIIKEAINHKGYALV 181 (287)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 333322233369999999999999999999998
No 110
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=92.44 E-value=0.19 Score=42.51 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=65.9
Q ss_pred EEechh-HHHHHHHHHHHHhcCCCeeEEEecCccc--HHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCC
Q 018167 88 VFNTPL-CEQGIVGFAIGLAAMGNRAIAEIQFADY--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY 164 (360)
Q Consensus 88 ~i~~GI-aE~~~vg~AaGlA~~G~~p~~~~~f~~F--~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~ 164 (360)
+.++++ +|..-+|++||..++|.+|-.-+|-+.. +-.++..+. +..+.|. .++.+|+|-..-.-.++
T Consensus 43 i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~---------~ty~iPl-~ml~ShRG~~~E~i~AQ 112 (172)
T COG4032 43 IPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLY---------VTYKIPL-LMLASHRGVLKEGIEAQ 112 (172)
T ss_pred cccccccchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHH---------HHhccch-hhhhhccchhhcCCccc
Confidence 445544 6899999999999999999988655543 123332221 1112566 67777775432111111
Q ss_pred C----CchHHHHHcCCCCcEEEeeCCHHHHHHHHHH----hHhCCCCEEEecccccc
Q 018167 165 H----SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS----CIRDPNPVVFFEPKWLY 213 (360)
Q Consensus 165 H----s~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~----a~~~~~P~~i~~~k~l~ 213 (360)
- ... .+++. -++.-+.|-.|+|+..++.. +++...|+.++.+.+..
T Consensus 113 VpmGr~~~--kiLe~-~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~~~W 166 (172)
T COG4032 113 VPMGRALP--KILEG-LELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSPKYW 166 (172)
T ss_pred cccchhhH--HHHhh-cCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEechHHh
Confidence 0 111 22222 14556778888886665554 55568999997665443
No 111
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=92.44 E-value=2.5 Score=36.98 Aligned_cols=116 Identities=17% Similarity=0.120 Sum_probs=67.3
Q ss_pred HHHHhCCCcEEechh-HH-HHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEc
Q 018167 79 LADRFGKSRVFNTPL-CE-QGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153 (360)
Q Consensus 79 ~~~~~gp~r~i~~GI-aE-~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~ 153 (360)
+.-+. |.+|+..+. .= -..++.|.|.++.. -++++++ ..+ |++...| +.+ +...+ +|+ .+++..
T Consensus 36 ~~~~~-~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i-~GDG~f~~~~~e-l~t-~~~~~------lp~-~~iv~N 104 (178)
T cd02014 36 LRMNG-KQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIAL-SGDGGFAMLMGD-LIT-AVKYN------LPV-IVVVFN 104 (178)
T ss_pred cccCC-CCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEE-EcchHHHhhHHH-HHH-HHHhC------CCc-EEEEEE
Confidence 33344 678887542 11 12455666766653 3566664 444 5544333 433 45444 466 566555
Q ss_pred CCCCCC--------CC---CCCCCchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 154 PYGAVG--------HG---GHYHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 154 ~~g~~g--------~~---g~~Hs~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.+++.- .+ +.....-|+ ++.++. |++.+...++.|++..++.+.+.++|++|
T Consensus 105 N~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~~~~p~li 168 (178)
T cd02014 105 NSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALAADGPVVI 168 (178)
T ss_pred CCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 544320 11 111111243 444554 78888899999999999999999999988
No 112
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=92.34 E-value=5.2 Score=36.94 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=25.6
Q ss_pred CCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 177 PGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 177 Pn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
+.+..+...++.|+..+++.+++.++|++|
T Consensus 166 ~~~~~~~v~~~~el~~al~~a~~~~gP~lI 195 (235)
T cd03376 166 PYVATASVAYPEDLYKKVKKALSIEGPAYI 195 (235)
T ss_pred cEEEEEcCCCHHHHHHHHHHHHhCCCCEEE
Confidence 344446789999999999999999999988
No 113
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.30 E-value=3.1 Score=39.54 Aligned_cols=146 Identities=11% Similarity=0.028 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCC-CeeEEEecCcc
Q 018167 42 LYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFAD 120 (360)
Q Consensus 42 ~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G-~~p~~~~~f~~ 120 (360)
...++.++|.++....++.++ ..|++-.+ ....+.+-+++ +-.. -..+.+|.|+++.. -++++.+ -.+
T Consensus 18 il~al~~al~~l~~~~~~~iv-vsdiGc~~---~~~~~~~~~~~--~~~~----G~alp~A~GaklA~Pd~~VV~i-~GD 86 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVV-VSGIGCSS---NLPEFLNTYGI--HGIH----GRVLPIATGVKWANPKLTVIGY-GGD 86 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEE-EECCchhh---hhhhhccCCCc--cccc----ccHHHHHHHHHHHCCCCcEEEE-ECC
Confidence 456777777766544455444 45665111 11122111111 1112 35677888887763 4566664 444
Q ss_pred c--HHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC--C-CC-CCC----------CC-----chHHHHHc--CCC
Q 018167 121 Y--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--G-HG-GHY----------HS-----QSPEAFFC--HVP 177 (360)
Q Consensus 121 F--~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~--g-~~-g~~----------Hs-----~~d~a~~r--~iP 177 (360)
- ..-.+..+.+ +++.+ .++ .+|+.+...+. + .. .++ .. .+...+.+ ..+
T Consensus 87 G~~f~ig~~eL~t-A~rrn------~~i-~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~ 158 (279)
T PRK11866 87 GDGYGIGLGHLPH-AARRN------VDI-TYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGAT 158 (279)
T ss_pred hHHHHccHHHHHH-HHHHC------cCc-EEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCC
Confidence 3 3455566665 55444 366 56655543321 1 00 000 00 12223333 455
Q ss_pred CcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 178 GLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 178 n~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.+....+.++.|+..+++.|++.++|.+|
T Consensus 159 ~Va~~~~~~~~~l~~~l~~Al~~~Gps~I 187 (279)
T PRK11866 159 FVARGFSGDVKHLKEIIKEAIKHKGFSFI 187 (279)
T ss_pred EEEEEcCCCHHHHHHHHHHHHhCCCCEEE
Confidence 55566779999999999999999999999
No 114
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.18 E-value=2 Score=41.22 Aligned_cols=37 Identities=11% Similarity=-0.120 Sum_probs=31.8
Q ss_pred HHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 170 ~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
++.-..+|-+-...|.++.++...++.|++.+||.+|
T Consensus 166 i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I 202 (300)
T PRK11864 166 IMAAHKVPYVATASIAYPEDFIRKLKKAKEIRGFKFI 202 (300)
T ss_pred HHHHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 3333456778889999999999999999999999999
No 115
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=92.13 E-value=2.3 Score=36.79 Aligned_cols=111 Identities=16% Similarity=0.062 Sum_probs=64.4
Q ss_pred CcEEechhHHHHHHHHHHHHhcCCCeeEEEe-cCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC---CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHG 161 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~-~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~---g~~ 161 (360)
=||+.+ -.|++++.+|.|.|+.. +|-+++ +..+=+..+..-|.+ +...+ + |+++....... +.+
T Consensus 36 i~~i~~-rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~~-A~~~~--------~-Pvl~i~g~~~~~~~~~~ 103 (162)
T cd07038 36 LRWVGN-CNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIAG-AYAEH--------V-PVVHIVGAPSTKAQASG 103 (162)
T ss_pred ceEEee-CCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHHH-HHHcC--------C-CEEEEecCCCccccccc
Confidence 466666 59999999999999986 455543 445545556555554 22212 2 44444322211 111
Q ss_pred CCCC-----C-chH-HHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEecc
Q 018167 162 GHYH-----S-QSP-EAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEP 209 (360)
Q Consensus 162 g~~H-----s-~~d-~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~ 209 (360)
...| + ++| .++++.+=.. .....+++++..+++.|+. .++||||-.|
T Consensus 104 ~~~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 104 LLLHHTLGDGDFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred cceeecccccchHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 1112 1 233 6888876544 3444677777777776665 4799999444
No 116
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=92.07 E-value=1.7 Score=38.13 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCCcEE-echhHH-HHHHHHHHHHhcCCCeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 84 GKSRVF-NTPLCE-QGIVGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 84 gp~r~i-~~GIaE-~~~vg~AaGlA~~G~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
.|.+|+ +.|..- -..++.|.|.++.--+|++++ -.+ |.+-. ..+-. +...+ +|+ .+|+...+++.-
T Consensus 40 ~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i-~GDGsf~m~~-~eL~t-a~~~~------l~v-~ivVlNN~~~g~ 109 (175)
T cd02009 40 KTVRVFANRGASGIDGTLSTALGIALATDKPTVLL-TGDLSFLHDL-NGLLL-GKQEP------LNL-TIVVINNNGGGI 109 (175)
T ss_pred CCceEEecCCccchhhHHHHHHHHHhcCCCCEEEE-EehHHHHHhH-HHHHh-ccccC------CCe-EEEEEECCCCch
Confidence 378888 434221 124466677666545777775 454 43332 22222 22222 466 566555544321
Q ss_pred CC-CCC--------------CCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 HG-GHY--------------HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 ~~-g~~--------------Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.. ..+ +..+-.++.+++ |+.-+...+++|+..+++++++.++|++|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 170 (175)
T cd02009 110 FSLLPQASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQDGPHVI 170 (175)
T ss_pred heeccCCcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 00 000 111112333433 56667778999999999999999999988
No 117
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=92.06 E-value=1.3 Score=46.20 Aligned_cols=119 Identities=13% Similarity=0.032 Sum_probs=71.0
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC--C-CC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--G-HG 161 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~--g-~~ 161 (360)
=|++.+ --|++++.+|.|.|+. |..-++.++..+=..-+..-|-+ |+.+. .|+ +++++..... + ..
T Consensus 41 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gia~--A~~~~-----~Pv--l~I~G~~~~~~~~~~~ 110 (554)
T TIGR03254 41 MRYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN--ATTNC-----FPM--IMISGSSERHIVDLQQ 110 (554)
T ss_pred CcEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHHHH--HHhcC-----CCE--EEEEccCCccccccCC
Confidence 478877 4999999999999997 54444444556655455554443 22221 344 2333322211 1 12
Q ss_pred CCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCCEEEecccccccc
Q 018167 162 GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYRL 215 (360)
Q Consensus 162 g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~i~~~k~l~r~ 215 (360)
+.++.++..++++.+-.. .+...++.++...++.|++ . +|||||-.|..+...
T Consensus 111 ~~~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv~~~ 168 (554)
T TIGR03254 111 GDYEEMDQLAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVLGQ 168 (554)
T ss_pred CCcchhhHHHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHHhhc
Confidence 233345667888877554 5556677777766666654 2 689999888765443
No 118
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=91.88 E-value=1.2 Score=38.72 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=63.8
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..|. +=-..+++|.|+++.. -+|++++ ..+ |.+ ....+- .++..+ +|+ .+++...+++..
T Consensus 38 p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i-~GDG~f~~-~~~el~-ta~~~~------lpv-~ivv~NN~~~~~ 107 (172)
T cd02004 38 PRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLV-EGDGAFGF-SGMELE-TAVRYN------LPI-VVVVGNNGGWYQ 107 (172)
T ss_pred CCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEE-EcchhhcC-CHHHHH-HHHHcC------CCE-EEEEEECccccc
Confidence 789988642 2223556777777765 4677775 444 332 223333 345444 466 556555444321
Q ss_pred CC---------C----CCCCchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 HG---------G----HYHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 ~~---------g----~~Hs~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.. . ..+...|. .+.++. |+..+.-.+.+|++.+++.+...++|++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 167 (172)
T cd02004 108 GLDGQQLSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALASGKPALI 167 (172)
T ss_pred chhhhhhhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHcCCCEEE
Confidence 00 0 01112233 333333 56677778999999999999988999988
No 119
>PLN02470 acetolactate synthase
Probab=91.78 E-value=1.4 Score=46.14 Aligned_cols=155 Identities=12% Similarity=0.019 Sum_probs=88.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecC
Q 018167 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (360)
Q Consensus 40 ~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f 118 (360)
++-.+++.+.|.++ --+.|+.+-.+-- ...++.+.+.-+ =|++.+ --|++++.+|.|.|+. |...++..++
T Consensus 13 ~~~a~~l~~~L~~~--GV~~vFg~pG~~~----~~l~dal~~~~~-i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~ 84 (585)
T PLN02470 13 RKGADILVEALERE--GVDTVFAYPGGAS----MEIHQALTRSNC-IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATS 84 (585)
T ss_pred ccHHHHHHHHHHHc--CCCEEEEcCCccc----HHHHHHHhccCC-ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 34455666665542 1344555544421 112334432211 478887 6999999999999987 5444544567
Q ss_pred cccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q 018167 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (360)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~ 196 (360)
.+=+..++.-|.+ |+.. .+ |+++........ ..+.+|.....++++.+-.. -+...+++++..+++.
T Consensus 85 GPG~~N~l~gia~--A~~~-------~~-Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~i~~~l~~ 153 (585)
T PLN02470 85 GPGATNLVTGLAD--ALLD-------SV-PLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH-NYLVMDVEDIPRVIRE 153 (585)
T ss_pred CccHHHHHHHHHH--HHhc-------CC-cEEEEecCCChhhcCCCcCcccchhhhhhhheEE-EEEcCCHHHHHHHHHH
Confidence 7766566555553 2222 23 455443222211 12233445556777776433 3335688888888888
Q ss_pred hHhC-----CCCEEEecccccc
Q 018167 197 CIRD-----PNPVVFFEPKWLY 213 (360)
Q Consensus 197 a~~~-----~~P~~i~~~k~l~ 213 (360)
|++. ++||||-.|..+.
T Consensus 154 A~~~A~s~~~GPV~l~iP~Dv~ 175 (585)
T PLN02470 154 AFFLASSGRPGPVLVDIPKDIQ 175 (585)
T ss_pred HHHHhcCCCCCeEEEEecCchh
Confidence 8763 6999998887653
No 120
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=91.38 E-value=4.4 Score=42.52 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=68.1
Q ss_pred cEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCCCC-CCC
Q 018167 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVGH-GGH 163 (360)
Q Consensus 87 r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~g~-~g~ 163 (360)
|++.+ ..|++++.+|.|.|+. |...++..++.+=+.-++.-|.+ |+.+ .+ |+++. +....... .+.
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~--A~~~-------~~-Pvl~I~G~~~~~~~~~~~ 121 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGIAT--AQMD-------SV-PLLVITGQVGRAFIGTDA 121 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHHHH--Hhhc-------CC-CEEEEecCCCccccCCCC
Confidence 67776 5999999999999987 54444444666655555544442 3222 22 44444 32222111 123
Q ss_pred CCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCCEEEecccccc
Q 018167 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (360)
Q Consensus 164 ~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~i~~~k~l~ 213 (360)
.+.++..++++.+--. .....+++++..+++.|++ .+|||||-.|..+.
T Consensus 122 ~q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 175 (585)
T CHL00099 122 FQEVDIFGITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDVG 175 (585)
T ss_pred ccccchhhhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhhh
Confidence 3334445666655322 3445677888777777765 26899998887653
No 121
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=91.27 E-value=6.3 Score=35.13 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=23.2
Q ss_pred EeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 182 VIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 182 ~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
..+.++.|+..+++++++.++|++|
T Consensus 155 ~~v~~~~el~~al~~al~~~gp~vI 179 (193)
T cd03375 155 GFSGDIKQLKEIIKKAIQHKGFSFV 179 (193)
T ss_pred EecCCHHHHHHHHHHHHhcCCCEEE
Confidence 4689999999999999999999999
No 122
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=91.17 E-value=3.8 Score=35.95 Aligned_cols=111 Identities=12% Similarity=0.063 Sum_probs=63.6
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcC-CCeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~-G~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.||+..+- +=-..++.|.|.+++ .-+|++++ -.+ |.+.. ..+.. +...+ +|+ .+|+...+++.-
T Consensus 38 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i-~GDG~f~m~~-~eL~t-a~~~~------l~v-i~vV~NN~~~g~ 107 (177)
T cd02010 38 PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAV-SGDGGFMMNS-QELET-AVRLK------IPL-VVLIWNDNGYGL 107 (177)
T ss_pred CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEE-EcchHHHhHH-HHHHH-HHHHC------CCe-EEEEEECCcchH
Confidence 789987532 112344567777765 45677775 444 44333 22332 44434 466 555555444321
Q ss_pred C-------CC-CCC---CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 H-------GG-HYH---SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 ~-------~g-~~H---s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
. .+ ..+ ..-|+ ++.+++ |+.-+...+++|++.+++++++.++|.+|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 165 (177)
T cd02010 108 IKWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVI 165 (177)
T ss_pred HHHHHHHhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 0 01 011 11133 333444 67777889999999999999999999998
No 123
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.16 E-value=4.8 Score=41.99 Aligned_cols=116 Identities=16% Similarity=0.051 Sum_probs=74.2
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCCC-CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG-HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~g-~~g 162 (360)
=+++.+ -.|++++.+|.|.|+. |...++..++.+=+.-+..-+.+ |+.. .+ |+++. +...... ..+
T Consensus 42 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gla~--A~~~-------~~-Pvl~i~G~~~~~~~~~~ 110 (563)
T PRK08527 42 FKHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGLAT--AYMD-------SI-PLVLISGQVPNSLIGTD 110 (563)
T ss_pred CeEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHHHH--Hhhc-------CC-CEEEEecCCCccccCCC
Confidence 477777 5999999999999986 55555555677755556555553 2222 23 44444 3222111 122
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~i~~~k~l~ 213 (360)
..|..+..++++.+=-. .....+++++..+++.|++. +|||||-.|..+.
T Consensus 111 ~~q~~d~~~~~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv~ 165 (563)
T PRK08527 111 AFQEIDAVGISRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVT 165 (563)
T ss_pred CCcccchhhhhhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHh
Confidence 34445566788876543 45568899998888888762 5899998887654
No 124
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=91.06 E-value=3.5 Score=43.35 Aligned_cols=157 Identities=14% Similarity=0.101 Sum_probs=83.9
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCc
Q 018167 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFA 119 (360)
Q Consensus 41 ~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~ 119 (360)
+..+++.+.|.++ --..|+.+-.+-. ....+.+.+.-+.=+|+.+ -.|++++.+|-|.|+. |...++..++.
T Consensus 4 ~~a~~l~~~L~~~--GV~~vFGvpG~~~----~~l~dal~~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~G 76 (597)
T PRK08273 4 TVADFILERLREW--GVRRVFGYPGDGI----NGLLGALGRADDKPEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSG 76 (597)
T ss_pred cHHHHHHHHHHHC--CCCEEEEeCCCch----HHHHHHHHhccCCCeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 3344444444432 1345666555521 1123344332112477777 4999999999999987 55445444677
Q ss_pred ccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCCC-CCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 018167 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG-HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (360)
Q Consensus 120 ~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~g-~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a 197 (360)
+=+.-+..-|-+ |+.. .+ |+++. +...... ..+..+.....++++.+-.--.....++.++...++.|
T Consensus 77 PG~~n~~~gi~~--A~~d-------~v-Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A 146 (597)
T PRK08273 77 PGAIHLLNGLYD--AKLD-------HV-PVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRA 146 (597)
T ss_pred ccHHHHHHHHHH--HHhc-------CC-CEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHH
Confidence 766555555542 2222 23 44443 3221111 12223334555777765311234555666666655555
Q ss_pred Hh----CCCCEEEeccccccc
Q 018167 198 IR----DPNPVVFFEPKWLYR 214 (360)
Q Consensus 198 ~~----~~~P~~i~~~k~l~r 214 (360)
++ .++||||-.|..+.+
T Consensus 147 ~~~A~~~~gPV~i~iP~Dv~~ 167 (597)
T PRK08273 147 VRTALAERTVTAVILPNDVQE 167 (597)
T ss_pred HHHHhhCCCCEEEEeCcchhh
Confidence 54 579999988876644
No 125
>PRK06154 hypothetical protein; Provisional
Probab=90.97 E-value=4.3 Score=42.42 Aligned_cols=153 Identities=15% Similarity=0.047 Sum_probs=84.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-C-CeeEEE-
Q 018167 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-G-NRAIAE- 115 (360)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G-~~p~~~- 115 (360)
.++..+++.+.|.++ +=+.++.-+ +. ..++.+.+ - .=|++.+ --|++++.+|.|.|+. | -+|-++
T Consensus 19 ~~~~a~~l~~~L~~~---GV~~vFGip----~~--~l~dal~~-~-~i~~i~~-rhE~~A~~mAdgyar~t~g~~~gv~~ 86 (565)
T PRK06154 19 TMKVAEAVAEILKEE---GVELLFGFP----VN--ELFDAAAA-A-GIRPVIA-RTERVAVHMADGYARATSGERVGVFA 86 (565)
T ss_pred cccHHHHHHHHHHHc---CCCEEEeCc----CH--HHHHHHHh-c-CCeEEee-CcHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 344456666666543 334444333 11 12344533 2 2578876 5999999999999996 3 455554
Q ss_pred ecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q 018167 116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (360)
Q Consensus 116 ~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~ 195 (360)
.++.+=+..+..-|.+ |+.+ .+ |+++..........+.....+...+++.+--. .....++.++...++
T Consensus 87 ~t~GPG~~N~~~gla~--A~~~-------~~-Pvl~i~G~~~~~~~~~~~~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~ 155 (565)
T PRK06154 87 VQYGPGAENAFGGVAQ--AYGD-------SV-PVLFLPTGYPRGSTDVAPNFESLRNYRHITKW-CEQVTLPDEVPELMR 155 (565)
T ss_pred ECCCccHHHHHHHHHH--Hhhc-------CC-CEEEEeCCCCcccccCCCCcchhhhHhhccee-EEECCCHHHHHHHHH
Confidence 3566655555555543 2222 22 45544322111111111012234667766542 455677777777777
Q ss_pred HhHh-----CCCCEEEeccccccc
Q 018167 196 SCIR-----DPNPVVFFEPKWLYR 214 (360)
Q Consensus 196 ~a~~-----~~~P~~i~~~k~l~r 214 (360)
.|++ .++||||-.|..+..
T Consensus 156 ~A~~~A~s~~~GPV~l~iP~Dv~~ 179 (565)
T PRK06154 156 RAFTRLRNGRPGPVVLELPVDVLA 179 (565)
T ss_pred HHHHHHhcCCCceEEEecchHHhh
Confidence 6664 269999988876544
No 126
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=90.34 E-value=3.3 Score=42.93 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=69.9
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCCC--CC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG--HG 161 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~g--~~ 161 (360)
=||+.+ --|++++.+|-|.|+. | +.++..+..+-+..+..-+.+ |+.+ .+ |+++. +...... .+
T Consensus 40 i~~v~~-rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~~gla~--A~~d-------~~-Pvl~I~G~~~~~~~~~~ 107 (539)
T TIGR03393 40 ICWVGC-ANELNAAYAADGYARCKG-AAALLTTFGVGELSAINGIAG--SYAE-------HL-PVIHIVGAPGTAAQQRG 107 (539)
T ss_pred CcEecc-CCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHhhHHHH--Hhhc-------cC-CEEEEECCCCcchhhcC
Confidence 367766 5999999999999997 6 566655677766555555553 3222 22 44443 3221111 00
Q ss_pred C-CCCC------chHHHHHcCCCCc-EEEeeCC-HHHHHHHHHHhHhCCCCEEEecccccccc
Q 018167 162 G-HYHS------QSPEAFFCHVPGL-KVVIPRS-PRQAKGLLLSCIRDPNPVVFFEPKWLYRL 215 (360)
Q Consensus 162 g-~~Hs------~~d~a~~r~iPn~-~V~~P~d-~~e~~~~l~~a~~~~~P~~i~~~k~l~r~ 215 (360)
. .||. ++...+++.+--. .+..|.+ +.++..+++.|+..++||||-.|+.+.+.
T Consensus 108 ~~~~~~~~~~~~q~~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv~~~ 170 (539)
T TIGR03393 108 ELLHHTLGDGDFRHFYRMAAEVTVAQAVLTEQNATAEIDRVITTALRERRPGYLMLPVDVAAK 170 (539)
T ss_pred ceeeeecCCCchHHHHHHhhceEEEEEEeChhhhHHHHHHHHHHHHhcCCCEEEEecccccCC
Confidence 0 1111 1223445443211 1224666 78889999999988899999888876544
No 127
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=90.28 E-value=2.8 Score=43.52 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=65.8
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC---CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHG 161 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~---g~~ 161 (360)
-|++.+ --|++++-+|-|.|+. |...++..+..+=...+..-|.. |+.. .+ |+++....... +.+
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gia~--A~~~-------~~-Pvl~i~g~~~~~~~~~~ 107 (535)
T TIGR03394 39 LPLHTL-SHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAIAG--AYAE-------KS-PVVVISGAPGTTEGNAG 107 (535)
T ss_pred CeEEcc-cCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHHHH--Hhhc-------CC-CEEEEECCCCcccccCC
Confidence 378876 5999999999999997 55555554566654445444442 2222 22 44544322221 122
Q ss_pred CC-CCCc---h-HHHHHcCCCCc--EEEeeCC-HHHHHHHHHHhHhCCCCEEEeccccccc
Q 018167 162 GH-YHSQ---S-PEAFFCHVPGL--KVVIPRS-PRQAKGLLLSCIRDPNPVVFFEPKWLYR 214 (360)
Q Consensus 162 g~-~Hs~---~-d~a~~r~iPn~--~V~~P~d-~~e~~~~l~~a~~~~~P~~i~~~k~l~r 214 (360)
.. ||+. . ...+++.+--. .|..|.+ +..+..+++.|...++||||-.|..+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~Dv~~ 168 (535)
T TIGR03394 108 LLLHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARELSRPVYLEIPRDMVN 168 (535)
T ss_pred ceeEeeccchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHHCCCCEEEEechhhcc
Confidence 21 3442 2 24667765432 2233333 2334555666666689999988887643
No 128
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=89.75 E-value=3.7 Score=43.12 Aligned_cols=116 Identities=14% Similarity=0.040 Sum_probs=70.8
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEE-cCCCCCC-CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGAVG-HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~-~~~g~~g-~~g 162 (360)
=|++.+- .|++++.+|-|.|+. |...++..++.+=+.-++.-|.+ +-..+ + |+++. +...... ..+
T Consensus 39 i~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i~~-A~~~~--------~-Pvl~I~G~~~~~~~~~~ 107 (586)
T PRK06276 39 LIHILTR-HEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGIAT-AYADS--------S-PVIALTGQVPTKLIGND 107 (586)
T ss_pred CcEEEec-cHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH-HHhcC--------C-CEEEEeCCCCccccCCC
Confidence 3778774 999999999999997 54444444666655555555553 22222 2 44433 2211111 223
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-----CCCEEEecccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~i~~~k~l~ 213 (360)
..+.....++++.+-.. ...-.++.++...++.|++. ++||||-.|..+.
T Consensus 108 ~~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 162 (586)
T PRK06276 108 AFQEIDALGIFMPITKH-NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQ 162 (586)
T ss_pred CCccccHhhHHhhhcce-EEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhHH
Confidence 33345566788876554 33446677777777777652 6999998887654
No 129
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=89.41 E-value=13 Score=34.38 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=26.6
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHhHh-CCCCEEE
Q 018167 175 HVPGLKVVIPRSPRQAKGLLLSCIR-DPNPVVF 206 (360)
Q Consensus 175 ~iPn~~V~~P~d~~e~~~~l~~a~~-~~~P~~i 206 (360)
.++......+.++.|++.+++++++ .++|++|
T Consensus 166 G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI 198 (237)
T cd02018 166 GCVYVARLSPALKKHFLKVVKEAISRTDGPTFI 198 (237)
T ss_pred CCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEE
Confidence 3445554569999999999999998 9999999
No 130
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.23 E-value=5.3 Score=38.03 Aligned_cols=146 Identities=10% Similarity=0.016 Sum_probs=77.7
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEe-chhHHHHHHHHHHHHhcCC-CeeEEEecC
Q 018167 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFN-TPLCEQGIVGFAIGLAAMG-NRAIAEIQF 118 (360)
Q Consensus 41 ~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~-~GIaE~~~vg~AaGlA~~G-~~p~~~~~f 118 (360)
....++.+++.++.-..++.+ +..|++-.+ ....+.+ +..+.- .| ..+..|.|+++.. -++++++ -
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~i-vvsdiG~~~---~~~~~~~---~~~~~~~mG----~alp~AiGaklA~pd~~VVai-~ 85 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVV-IVSGIGQAA---KMPHYIN---VNGFHTLHG----RAIPAATAVKATNPELTVIAE-G 85 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEE-EEeCchHhh---hHHHHcc---CCCCCcccc----cHHHHHHHHHHHCCCCcEEEE-E
Confidence 456788888877644444554 445655111 1111111 122211 23 4566777777764 4677775 4
Q ss_pred cc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC--C-CC------C--C-C--CC-c---hHH-HHHcC--
Q 018167 119 AD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--G-HG------G--H-Y--HS-Q---SPE-AFFCH-- 175 (360)
Q Consensus 119 ~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~--g-~~------g--~-~--Hs-~---~d~-a~~r~-- 175 (360)
.| |..-.+..+.+ ++..+ .|+ .+|+.+..++. + .. | + + +. . -|. .+..+
T Consensus 86 GDG~~~~iG~~eL~t-A~r~n------l~i-~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G 157 (280)
T PRK11869 86 GDGDMYAEGGNHLIH-AIRRN------PDI-TVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALD 157 (280)
T ss_pred CchHHhhCcHHHHHH-HHHhC------cCc-EEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCC
Confidence 44 33333555654 45444 466 66666544321 1 00 0 0 0 01 1 122 22222
Q ss_pred CCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 176 VPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 176 iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.+.+....+.++.|+..+++.|++.++|++|
T Consensus 158 ~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lI 188 (280)
T PRK11869 158 ASFVARTFSGDIEETKEILKEAIKHKGLAIV 188 (280)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 3333333399999999999999999999999
No 131
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.21 E-value=5 Score=38.54 Aligned_cols=37 Identities=8% Similarity=-0.036 Sum_probs=32.1
Q ss_pred HHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 170 ~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
++.-...|-+....|.++.|+...++.|.+.+||.+|
T Consensus 170 Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I 206 (299)
T PRK11865 170 IMAAHGIPYVATASIGYPEDFMEKVKKAKEVEGPAYI 206 (299)
T ss_pred HHHHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 3333567778888999999999999999999999999
No 132
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=89.18 E-value=7.9 Score=34.77 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=28.6
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 171 a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
++.+++ |+.-+...+++|++.+++.+++.++|++|
T Consensus 145 ~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 179 (205)
T cd02003 145 ANARSL-GARVEKVKTIEELKAALAKAKASDRTTVI 179 (205)
T ss_pred HHHHhC-CCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 334444 66777779999999999999999999988
No 133
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=89.16 E-value=4.3 Score=42.30 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=69.8
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC--CCCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GHGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~--g~~g 162 (360)
=|++.+ .-|++++.+|-|.|+. |...++..++.+=+..++.-|.+ |+.. .+ |+++....... -..+
T Consensus 48 i~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~i~~--A~~~-------~~-Pvl~IsG~~~~~~~~~~ 116 (568)
T PRK07449 48 LRLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPAVIE--AGLT-------GV-PLIVLTADRPPELRDCG 116 (568)
T ss_pred cEEEee-cCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHHHHH--Hhhc-------CC-cEEEEECCCCHHHhcCC
Confidence 377777 5999999999999987 54444444677766566555553 2222 22 44444322211 1234
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCH-----HHHHHHHHHhH---h-CCCCEEEeccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSP-----RQAKGLLLSCI---R-DPNPVVFFEPKWL 212 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~-----~e~~~~l~~a~---~-~~~P~~i~~~k~l 212 (360)
.+|.+...++++.+-...+-.|.+. ..+..+++.+. . .++||||-.|..+
T Consensus 117 ~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~Dv 175 (568)
T PRK07449 117 ANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFRE 175 (568)
T ss_pred CCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCCC
Confidence 4556777888888775556666551 11344555533 2 3799999888653
No 134
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=88.63 E-value=3.8 Score=34.77 Aligned_cols=111 Identities=18% Similarity=0.257 Sum_probs=64.0
Q ss_pred CCcEEec--hhHHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNT--PLCEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~--GIaE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|++. .-+=-..++.|.|+++.. -++++.+ -.+ |.+- ...|.+ +...+ +|+ .+|+...+++.-
T Consensus 18 p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i-~GDG~f~~~-~~el~t-a~~~~------~~v-~~vv~nN~~~~~ 87 (153)
T PF02775_consen 18 PRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAI-TGDGSFLMS-LQELAT-AVRYG------LPV-VIVVLNNGGYGM 87 (153)
T ss_dssp TTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEE-EEHHHHHHH-GGGHHH-HHHTT------SSE-EEEEEESSBSHH
T ss_pred CCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEe-cCCcceeec-cchhHH-Hhhcc------ceE-EEEEEeCCcceE
Confidence 7788872 123335667777877762 4566664 344 4433 333443 34333 366 566555544310
Q ss_pred -------CCC-C--------CCCchHHHHHcCCCCcEEEeeCCH--HHHHHHHHHhHhCCCCEEE
Q 018167 160 -------HGG-H--------YHSQSPEAFFCHVPGLKVVIPRSP--RQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 -------~~g-~--------~Hs~~d~a~~r~iPn~~V~~P~d~--~e~~~~l~~a~~~~~P~~i 206 (360)
.+. . .|..+-..+.+++ |+..+.-.++ +|++.+++++++.++|++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~~gp~vI 151 (153)
T PF02775_consen 88 TGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALESGGPAVI 151 (153)
T ss_dssp HHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred eccccccCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhCCCcEEE
Confidence 111 1 2223334455554 6666665555 9999999999999999988
No 135
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=88.53 E-value=11 Score=36.00 Aligned_cols=144 Identities=13% Similarity=0.074 Sum_probs=77.0
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEech-h--HHHHHHHHHHHHhcCC-CeeEEEe
Q 018167 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTP-L--CEQGIVGFAIGLAAMG-NRAIAEI 116 (360)
Q Consensus 41 ~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~G-I--aE~~~vg~AaGlA~~G-~~p~~~~ 116 (360)
..-.++.++|.++.....+.+++ .|++-.+ .+ | +|++.+ . .=-..+++|.|+++.. -++++++
T Consensus 27 ~il~~l~~al~~l~~~p~d~vvv-sdiGc~~----------~~-~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i 93 (286)
T PRK11867 27 SILAALQRALAELGLDPENVAVV-SGIGCSG----------RL-P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVV 93 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEE-eCCcccc----------cc-C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEE
Confidence 45677777777765555555444 6666211 11 1 334332 1 1124556777777763 4566664
Q ss_pred cCccc--HHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC--C-CC-CC---------C-CC-----chHHHHHcC
Q 018167 117 QFADY--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--G-HG-GH---------Y-HS-----QSPEAFFCH 175 (360)
Q Consensus 117 ~f~~F--~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~--g-~~-g~---------~-Hs-----~~d~a~~r~ 175 (360)
-.+- ++-....+.+ ++..+ +|+ .+|+...+++. + .. .+ + ++ ..-.++..+
T Consensus 94 -~GDG~~f~mg~~eL~t-A~r~n------l~i-~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a 164 (286)
T PRK11867 94 -TGDGDALAIGGNHFIH-ALRRN------IDI-TYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALG 164 (286)
T ss_pred -eCccHHHhCCHHHHHH-HHHhC------CCc-EEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHH
Confidence 3443 3333444554 45444 466 55655543321 1 10 00 0 11 122344444
Q ss_pred CCC--cEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 176 VPG--LKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 176 iPn--~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
... .......++.|+..+++.|++.++|++|
T Consensus 165 ~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lI 197 (286)
T PRK11867 165 AGATFVARGFDSDVKQLTELIKAAINHKGFSFV 197 (286)
T ss_pred CCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEE
Confidence 433 2233578999999999999999999999
No 136
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=88.52 E-value=4.1 Score=42.70 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=70.7
Q ss_pred CcEEechhHHHHHHHHHHHHhcCCCeeEEE-ecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g 162 (360)
=||+.+- -|++++.+|-|.|+...+|-++ .+..+=+..++.-+.+ |+.+ .+ |+++........ ..+
T Consensus 42 i~~i~~r-hE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~~--A~~~-------~~-Pvl~I~G~~~~~~~~~~ 110 (578)
T PRK06546 42 IEWVHVR-HEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLYD--AHRS-------GA-PVLAIASHIPSAQIGSG 110 (578)
T ss_pred CeEEEeC-cHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHHH--HHhc-------CC-CEEEEeCCCCccccCCC
Confidence 3588774 9999999999999985455444 3455544455444443 2222 22 455443221111 223
Q ss_pred CCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEEeccccccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYR 214 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i~~~k~l~r 214 (360)
.+|...+..+++.+--. .+...+++++...++.|++ .++||||-.|..+..
T Consensus 111 ~~Qe~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv~~ 165 (578)
T PRK06546 111 FFQETHPDRLFVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDIAD 165 (578)
T ss_pred CccccChhhhcccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhhhh
Confidence 44445667788866432 4566777777776666655 479999988876543
No 137
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=88.51 E-value=11 Score=33.28 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHH-HhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecCcc-
Q 018167 43 YSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLAD-RFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFAD- 120 (360)
Q Consensus 43 r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~-~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~- 120 (360)
|+++.++|.+.+. ..+++ .|.+.. ...+.. ...|.+|+..|-- ...++.|.|+++.--+|++++ -.+
T Consensus 1 ~~~~~~~l~~~l~--d~iiv--~d~G~~-----~~~~~~~~~~~~~~~~~gsm-G~~lpaAiGa~la~~~~Vv~i-~GDG 69 (181)
T TIGR03846 1 RIDAIRAIASYLE--DELVV--SNIGVP-----SKELYAIRDRPLNFYMLGSM-GLASSIGLGLALATDRTVIVI-DGDG 69 (181)
T ss_pred CHHHHHHHHHhCC--CCEEE--ecCCHh-----HHHHHhhhcCCCCeeecccc-ccHHHHHHHHHHcCCCcEEEE-Ecch
Confidence 4566677777663 33443 344411 112222 1227888875421 123457777776546677775 444
Q ss_pred -cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCC----CCCCchHHHHHcCCCCcEEEe-eCCHHHHHHHH
Q 018167 121 -YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGG----HYHSQSPEAFFCHVPGLKVVI-PRSPRQAKGLL 194 (360)
Q Consensus 121 -F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g----~~Hs~~d~a~~r~iPn~~V~~-P~d~~e~~~~l 194 (360)
|++-. ..+- -++..+. .|+ .+|+...+++...++ ..+...-.++.++. |+.-.. ..+++|+..++
T Consensus 70 ~f~m~~-~el~-ta~~~~~-----~pv-~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al 140 (181)
T TIGR03846 70 SLLMNL-GVLP-TIAAESP-----KNL-ILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRDAL 140 (181)
T ss_pred HHHhhh-hHHH-HHHHhCC-----CCe-EEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHH
Confidence 33222 2232 2333321 255 555555444322111 11111222333433 444444 78899999999
Q ss_pred HHhHhCCCCEEEe
Q 018167 195 LSCIRDPNPVVFF 207 (360)
Q Consensus 195 ~~a~~~~~P~~i~ 207 (360)
+ +.+.++|++|-
T Consensus 141 ~-a~~~~~p~li~ 152 (181)
T TIGR03846 141 K-ALAMKGPTFIH 152 (181)
T ss_pred H-HHcCCCCEEEE
Confidence 7 88889999983
No 138
>PRK08266 hypothetical protein; Provisional
Probab=88.47 E-value=11 Score=39.16 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=64.6
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..|. +=-..++.|.|+++.. -+|++++ -.+ |.+. ...+-. +...+ +|+ .+|+...+++..
T Consensus 392 ~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v-~GDG~f~~~-~~eL~t-a~~~~------lpv-~ivv~NN~~y~~ 461 (542)
T PRK08266 392 PRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSI-TGDGGFMFG-VQELAT-AVQHN------IGV-VTVVFNNNAYGN 461 (542)
T ss_pred CCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEE-Ecchhhhcc-HHHHHH-HHHhC------CCe-EEEEEeCCcchH
Confidence 788887752 1112345777877764 3555554 344 4443 233432 34434 466 566565554320
Q ss_pred --------CCCCC-----CCchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HGGHY-----HSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~g~~-----Hs~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.++.+ +.. |+ .+.+++ |+..+.-.+..|++.+++++++.++|++|
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~-d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 520 (542)
T PRK08266 462 VRRDQKRRFGGRVVASDLVNP-DFVKLAESF-GVAAFRVDSPEELRAALEAALAHGGPVLI 520 (542)
T ss_pred HHHHHHHhcCCCcccCCCCCC-CHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCcEEE
Confidence 11211 222 33 344454 77788889999999999999988999988
No 139
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=87.97 E-value=18 Score=32.12 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=59.4
Q ss_pred CCcEEechhHHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCC
Q 018167 85 KSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG 161 (360)
Q Consensus 85 p~r~i~~GIaE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~ 161 (360)
|.+|++.|-. -..++.|.|+++.. -+|++++ -.+ |++ ....+- .++..+. .|+ .+|+...+++...+
T Consensus 41 ~~~~~~~g~m-G~~lpaAiGaala~p~~~Vv~i-~GDG~f~m-~~~eL~-ta~~~~l-----~~i-~ivV~NN~~yg~~~ 110 (188)
T cd03371 41 AQDFLTVGSM-GHASQIALGIALARPDRKVVCI-DGDGAALM-HMGGLA-TIGGLAP-----ANL-IHIVLNNGAHDSVG 110 (188)
T ss_pred cCceeecCcc-ccHHHHHHHHHHhCCCCcEEEE-eCCcHHHh-hccHHH-HHHHcCC-----CCc-EEEEEeCchhhccC
Confidence 4889875421 12456777777653 4566665 444 332 222233 2333321 145 45555544432111
Q ss_pred C-CCC--CchHHHHHcCCCCcE-EEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 162 G-HYH--SQSPEAFFCHVPGLK-VVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 162 g-~~H--s~~d~a~~r~iPn~~-V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
+ .++ ...-..+.+++ |+. .....++.|+..+++.+++.++|++|
T Consensus 111 ~~~~~~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lI 158 (188)
T cd03371 111 GQPTVSFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALAADGPAFI 158 (188)
T ss_pred CcCCCCCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 1 111 12222334443 444 34567999999999999998999998
No 140
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=87.64 E-value=3 Score=37.59 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=48.7
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhc--CCCeeEEEeccc---cC-------CcHHHHHHHHhcCCeEEEEeCCCcCCch
Q 018167 239 SDITLVGWGAQ-LSIMEQACLDAEKE--GISCELIDLKTL---IP-------WDKETVEASVRKTGRLLISHEAPVTGGF 305 (360)
Q Consensus 239 ~dv~Iia~G~~-~~~al~Aa~~L~~~--Gi~v~Vi~~~~i---kP-------~d~~~l~~~~~~~~~ivvvEe~~~~GGl 305 (360)
.||++.++|.. +.+++.|++.|++. +++++|||+--| .| ++.+...+...+.+.|++.= -|.
T Consensus 35 PDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFaf-----HGY 109 (203)
T PF09363_consen 35 PDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFAF-----HGY 109 (203)
T ss_dssp -SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEEE-----SSE
T ss_pred CCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEEc-----CCC
Confidence 69999999976 68999999999998 899988876655 22 55666766666667776542 356
Q ss_pred HHHHHHHHHHh
Q 018167 306 GAEISASILER 316 (360)
Q Consensus 306 gs~v~~~l~~~ 316 (360)
-..|-..+..+
T Consensus 110 p~~i~~L~~~R 120 (203)
T PF09363_consen 110 PWLIHRLLFGR 120 (203)
T ss_dssp HHHHHHHTTTS
T ss_pred HHHHHHHhcCC
Confidence 67777766553
No 141
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=86.97 E-value=23 Score=33.63 Aligned_cols=162 Identities=10% Similarity=0.060 Sum_probs=84.8
Q ss_pred hHHHHHhhcCCCC--CCCc--ccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEE-echhHHHH
Q 018167 23 NKQLIQQHDGGVG--SGKS--LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVF-NTPLCEQG 97 (360)
Q Consensus 23 ~~~~~~~~~~~~~--~~~~--~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i-~~GIaE~~ 97 (360)
..++++.+..++. +|.. +.. ..+.++|.++....++++ +..|++-. ..+..-+.++++. -.| .
T Consensus 5 ~~~~~r~~~~~~~~CpGCg~~i~~-~~v~~al~e~~~~~~d~i-vvsdiGc~------~~~~~~~~~~~~~~~~G----~ 72 (277)
T PRK09628 5 YDEYLRVDKMPTLWCWGCGDGVIL-KSIIRAIDKLGWNMDDVC-VVSGIGCS------GRFSSYVNCNTVHTTHG----R 72 (277)
T ss_pred HHHHhccCCCCCCcCCCCCCchHH-HHHHHHHHHhcCCCCCEE-EEeCcCHH------HHhhccCCCCceeeccc----c
Confidence 4566666666644 3432 333 345577776643344554 44676611 1111122245555 444 6
Q ss_pred HHHHHHHHhcC-CCeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCC---------CC--
Q 018167 98 IVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG---------GH-- 163 (360)
Q Consensus 98 ~vg~AaGlA~~-G~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~---------g~-- 163 (360)
.+..|.|++++ .-++++++ -.+ |++-....+. .++..+ +|+ .+|+...+.+.--+ |.
T Consensus 73 alPaAiGaklA~Pdr~VV~i-~GDG~f~~~g~~el~-ta~r~n------lpi-~iIV~NN~~yGmt~~Q~~~~t~~g~~~ 143 (277)
T PRK09628 73 AVAYATGIKLANPDKHVIVV-SGDGDGLAIGGNHTI-HGCRRN------IDL-NFILINNFIYGLTNSQTSPTTPKGMWT 143 (277)
T ss_pred HHHHHHHHHHHCCCCeEEEE-ECchHHHHhhHHHHH-HHHHhC------cCe-EEEEEEChHHhcceecccCCCCCCcee
Confidence 67788888776 34566664 444 4322212222 245444 466 56655543322101 00
Q ss_pred ---CCCc----hHH-HHHcCCCCcEE---EeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 164 ---YHSQ----SPE-AFFCHVPGLKV---VIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 164 ---~Hs~----~d~-a~~r~iPn~~V---~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.+.. .|+ ++.++. |..- ....++.|++.+++.|++.++|++|
T Consensus 144 ~~~~~g~~~~~~D~~~lA~a~-G~~~va~~~v~~~~el~~al~~Al~~~Gp~lI 196 (277)
T PRK09628 144 VTAQYGNIDPTFDACKLATAA-GASFVARESVIDPQKLEKLLVKGFSHKGFSFF 196 (277)
T ss_pred eeccCCCcCCCCCHHHHHHHC-CCceEEEEccCCHHHHHHHHHHHHhCCCCEEE
Confidence 0000 122 222332 4432 5789999999999999999999999
No 142
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=86.67 E-value=6.9 Score=34.44 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=63.5
Q ss_pred CCcEEechh-H-HHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI-a-E~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+- . =-..++.|.|.++.. -++++++ ..+ |++.. ..+-. ++..+ +|+ .+|+...+++..
T Consensus 40 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i-~GDG~f~~~~-~eL~t-a~~~~------lpi-~ivV~nN~~~~~ 109 (186)
T cd02015 40 PRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICI-DGDGSFQMNI-QELAT-AAQYN------LPV-KIVILNNGSLGM 109 (186)
T ss_pred CCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEE-EcccHHhccH-HHHHH-HHHhC------CCe-EEEEEECCccHH
Confidence 788887542 1 113456777777663 3566664 444 44433 22433 44444 466 565555544320
Q ss_pred --------CC----CCCC-CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HG----GHYH-SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~----g~~H-s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.+ +.+. ..-|+ ++.+++ |+.-....++.|+..+++.+.+.++|++|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 169 (186)
T cd02015 110 VRQWQELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALASDGPVLL 169 (186)
T ss_pred HHHHHHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 01 1111 12233 344444 56666778899999999999999999999
No 143
>PRK06163 hypothetical protein; Provisional
Probab=86.43 E-value=24 Score=31.73 Aligned_cols=146 Identities=15% Similarity=0.090 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCC-CeeEEEecCcc-
Q 018167 43 YSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFAD- 120 (360)
Q Consensus 43 r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G-~~p~~~~~f~~- 120 (360)
|..+-+.|.+.+.++ ++++ .|.+... ...+...+.|.+|+..| +=-..+..|.|+++.. -++++++ -.+
T Consensus 15 ~~~~i~~l~~~l~~~-~~iv--~D~G~~~----~~~~~~~~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i-~GDG 85 (202)
T PRK06163 15 RFDLTCRLVAKLKDE-EAVI--GGIGNTN----FDLWAAGQRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIAL-EGDG 85 (202)
T ss_pred HHHHHHHHHHhcCCC-CEEE--ECCCccH----HHHHHhhcCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEE-Ecch
Confidence 555556666655433 3443 4654210 01111112277888544 2223344777777653 4667775 555
Q ss_pred -cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCC-C-C-CchHH-HHHcCCCCcE-EEeeCCHHHHHHHH
Q 018167 121 -YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGH-Y-H-SQSPE-AFFCHVPGLK-VVIPRSPRQAKGLL 194 (360)
Q Consensus 121 -F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~-~-H-s~~d~-a~~r~iPn~~-V~~P~d~~e~~~~l 194 (360)
|.+.. ..+-.-+.+.+ +|+ .+|+...+++.-.++. + + ..-|+ ++.+++ |+. -+...+.+|+..++
T Consensus 86 ~f~m~~-~eL~Ta~~~~~------lpi-~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al 156 (202)
T PRK06163 86 SLLMQL-GALGTIAALAP------KNL-TIIVMDNGVYQITGGQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEALV 156 (202)
T ss_pred HHHHHH-HHHHHHHHhcC------CCe-EEEEEcCCchhhcCCccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHH
Confidence 43333 22332112212 356 5555555443221211 1 1 11243 344444 554 55678999999999
Q ss_pred HHhHhCCCCEEE
Q 018167 195 LSCIRDPNPVVF 206 (360)
Q Consensus 195 ~~a~~~~~P~~i 206 (360)
+.+++.++|++|
T Consensus 157 ~~a~~~~~p~lI 168 (202)
T PRK06163 157 DQALSGPGPSFI 168 (202)
T ss_pred HHHHhCCCCEEE
Confidence 999999999998
No 144
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=85.74 E-value=24 Score=30.97 Aligned_cols=109 Identities=16% Similarity=0.076 Sum_probs=57.1
Q ss_pred CCcEEechhHHHHHHHHHHHHhcCCCeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCC
Q 018167 85 KSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGG 162 (360)
Q Consensus 85 p~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g 162 (360)
|.+|+..|.- -..++.|.|+++...++++++ ..+ |.+- ...+-. ++..+. .|+ .+++...+++...++
T Consensus 35 ~~~~~~~g~m-G~~lp~AiGaala~~~~vv~i-~GDG~f~m~-~~el~t-a~~~~~-----~~l-~vvV~NN~~~~~~~~ 104 (179)
T cd03372 35 PLNFYMLGSM-GLASSIGLGLALAQPRKVIVI-DGDGSLLMN-LGALAT-IAAEKP-----KNL-IIVVLDNGAYGSTGN 104 (179)
T ss_pred ccccccccch-hhHHHHHHHHHhcCCCcEEEE-ECCcHHHhC-HHHHHH-HHHcCC-----CCE-EEEEEcCccccccCC
Confidence 6777754422 233457777777644777775 555 3221 222222 332221 145 455555444322111
Q ss_pred ----CCCCchHHHHHcCCCCcEEEeeC-CHHHHHHHHHHhHhCCCCEEE
Q 018167 163 ----HYHSQSPEAFFCHVPGLKVVIPR-SPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 163 ----~~Hs~~d~a~~r~iPn~~V~~P~-d~~e~~~~l~~a~~~~~P~~i 206 (360)
..+..+-..+.++. |+..+... +++|+..+++++. ++|.+|
T Consensus 105 ~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~--~gp~lI 150 (179)
T cd03372 105 QPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL--DGPSFI 150 (179)
T ss_pred CCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc--CCCEEE
Confidence 11112222333433 44455556 9999999999988 789988
No 145
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=85.53 E-value=40 Score=33.31 Aligned_cols=112 Identities=12% Similarity=-0.017 Sum_probs=64.1
Q ss_pred CCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCC
Q 018167 85 KSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG 161 (360)
Q Consensus 85 p~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~ 161 (360)
|.+|+.+| +=-+..++|.|+|+. .-++++++ -.| |++..-+ +- .++..+. .|+ .+|+...++....+
T Consensus 214 ~~~f~~~G-sMG~a~p~AlG~ala~p~r~Vv~i-~GDGsflm~~~e-L~-t~~~~~~-----~nl-i~VVlNNg~~~~~g 283 (361)
T TIGR03297 214 ARDFLTVG-SMGHASQIALGLALARPDQRVVCL-DGDGAALMHMGG-LA-TIGTQGP-----ANL-IHVLFNNGAHDSVG 283 (361)
T ss_pred CCceEeec-hhhhHHHHHHHHHHHCCCCCEEEE-EChHHHHHHHHH-HH-HHHHhCC-----CCe-EEEEEcCccccccC
Confidence 57888765 222445688888876 34667775 444 4333322 22 2333221 145 45555554432111
Q ss_pred -CCCCC-chHH-HHHcCCCCc-EEEeeCCHHHHHHHHHHhHhCCCCEEEe
Q 018167 162 -GHYHS-QSPE-AFFCHVPGL-KVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (360)
Q Consensus 162 -g~~Hs-~~d~-a~~r~iPn~-~V~~P~d~~e~~~~l~~a~~~~~P~~i~ 207 (360)
-.+++ .-|+ .+.++. |. ..+...++.|+..+++++.+.++|++|-
T Consensus 284 ~q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al~~a~~~~gp~lIe 332 (361)
T TIGR03297 284 GQPTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETALTAASSANGPRLIE 332 (361)
T ss_pred CcCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 12222 2333 444554 43 4678899999999999999889999983
No 146
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=85.36 E-value=7.1 Score=40.74 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=66.1
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+- +=-..++.|.|.++.. -++++++ ..+ |++.+-| +-. +...+ +|+ .+|+...+++.-
T Consensus 409 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i-~GDGsf~~~~~e-L~t-a~~~~------lpv-i~vV~NN~~~g~ 478 (564)
T PRK08155 409 PRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCF-SGDGSLMMNIQE-MAT-AAENQ------LDV-KIILMNNEALGL 478 (564)
T ss_pred CCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEE-EccchhhccHHH-HHH-HHHhC------CCe-EEEEEeCCcccc
Confidence 788997642 2234566777777763 3455554 333 5554433 432 44444 466 555555443321
Q ss_pred --------CC----CCC--CCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HG----GHY--HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~----g~~--Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.+ +.. +...-.++.+++ |+.-+...+.+|+..+++.+++.++|++|
T Consensus 479 ~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 538 (564)
T PRK08155 479 VHQQQSLFYGQRVFAATYPGKINFMQIAAGF-GLETCDLNNEADPQAALQEAINRPGPALI 538 (564)
T ss_pred cHHHHHHhcCCCeeeccCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 01 111 112223455555 78888999999999999999998999998
No 147
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=85.24 E-value=8.1 Score=32.88 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCC------------
Q 018167 97 GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG------------ 161 (360)
Q Consensus 97 ~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~------------ 161 (360)
..++.|.|+++.. -++++++ ..+ |.+ .++.+.+ +...+ +|+ .+|+...+++....
T Consensus 50 ~~~~~a~Gaa~a~~~~~vv~~-~GDG~~~~-~~~~l~t-a~~~~------~~~-~~iv~nN~~~~~~~~~~~~~~~~~~~ 119 (168)
T cd00568 50 YGLPAAIGAALAAPDRPVVCI-AGDGGFMM-TGQELAT-AVRYG------LPV-IVVVFNNGGYGTIRMHQEAFYGGRVS 119 (168)
T ss_pred hhHHHHHHHHHhCCCCcEEEE-EcCcHHhc-cHHHHHH-HHHcC------CCc-EEEEEECCccHHHHHHHHHHcCCCcc
Confidence 4455777777764 3445553 444 333 4444443 34333 466 55555544322100
Q ss_pred CCC-CCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 162 GHY-HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 162 g~~-Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
+.. +..+-.++.++. |+......++.|+..+++++.+.++|++|
T Consensus 120 ~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~~~p~~i 164 (168)
T cd00568 120 GTDLSNPDFAALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALI 164 (168)
T ss_pred cccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 011 112223444443 67777788899999999999988999988
No 148
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=84.91 E-value=6.6 Score=35.02 Aligned_cols=111 Identities=16% Similarity=0.105 Sum_probs=63.6
Q ss_pred CCcEEechh-HH-HHHHHHHHHHhcC-CCeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL-CE-QGIVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI-aE-~~~vg~AaGlA~~-G~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+- .= -..+..|.|.++. .-+|++++ -.+ |++.. ..+-. +...+ +|+ .+|+...+++..
T Consensus 43 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i-~GDG~f~m~~-~eL~T-a~~~~------lpv-i~vV~NN~~yg~ 112 (196)
T cd02013 43 PRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAI-AGDGAWGMSM-MEIMT-AVRHK------LPV-TAVVFRNRQWGA 112 (196)
T ss_pred CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEE-EcchHHhccH-HHHHH-HHHhC------CCe-EEEEEECchhHH
Confidence 788886521 11 2345577777765 34667765 444 44433 33443 44434 466 566655554321
Q ss_pred --------CC----CCCC-CchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh---CCCCEEE
Q 018167 160 --------HG----GHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR---DPNPVVF 206 (360)
Q Consensus 160 --------~~----g~~H-s~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~---~~~P~~i 206 (360)
.+ +..+ ..+-..+.+++ |+.-..-.++.|+..+++++++ .++|++|
T Consensus 113 ~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~li 174 (196)
T cd02013 113 EKKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTVI 174 (196)
T ss_pred HHHHHHHHcCCCcccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCCeEEE
Confidence 01 0111 12222333443 6667788899999999999998 7999998
No 149
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=84.26 E-value=11 Score=32.93 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=51.8
Q ss_pred HHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCC-----------CC
Q 018167 99 VGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGG-----------HY 164 (360)
Q Consensus 99 vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g-----------~~ 164 (360)
++.|.|+++.. -++++++ -.+ |++-.+..+.. +...+ +|+ .+|+...+++.-.+. ..
T Consensus 57 l~~AiGa~la~p~~~Vv~i-~GDG~f~~~g~~eL~t-a~~~~------l~i-~vvV~nN~~~g~~~~~~~~~~~~~~~~~ 127 (178)
T cd02008 57 IGVAIGMAKASEDKKVVAV-IGDSTFFHSGILGLIN-AVYNK------ANI-TVVILDNRTTAMTGGQPHPGTGKTLTEP 127 (178)
T ss_pred HHHHhhHHhhCCCCCEEEE-ecChHHhhccHHHHHH-HHHcC------CCE-EEEEECCcceeccCCCCCCCCcccccCC
Confidence 34666666653 4566665 444 43333444543 44434 466 566666544311010 00
Q ss_pred CCchHH-HHHcC--CCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 165 HSQSPE-AFFCH--VPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 165 Hs~~d~-a~~r~--iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
+...|+ .+.++ ++...|..|.+-.++...++.+++.++|.+|
T Consensus 128 ~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI 172 (178)
T cd02008 128 TTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVI 172 (178)
T ss_pred CCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHhCCCCEEE
Confidence 111222 33333 3445555555555556888999988999988
No 150
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=83.85 E-value=14 Score=32.98 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=64.5
Q ss_pred HHHHhCCCcEEechh-H-HHHHHHHHHHHhcC-CCeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEc
Q 018167 79 LADRFGKSRVFNTPL-C-EQGIVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153 (360)
Q Consensus 79 ~~~~~gp~r~i~~GI-a-E~~~vg~AaGlA~~-G~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~ 153 (360)
+.-.. |.+|++.+- . =-..++.|.|.+++ .-+|++++ -.+ |++.. ..+-. +...+ +|+ .+|+..
T Consensus 42 ~~~~~-~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i-~GDG~f~m~~-~eL~T-a~~~~------lpv-iivV~N 110 (202)
T cd02006 42 LHVYK-PRHWINCGQAGPLGWTVPAALGVAAADPDRQVVAL-SGDYDFQFMI-EELAV-GAQHR------IPY-IHVLVN 110 (202)
T ss_pred cCcCC-CCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEE-EeChHhhccH-HHHHH-HHHhC------CCe-EEEEEe
Confidence 33344 788988642 1 11244577777765 34677775 444 44333 22332 44444 466 566555
Q ss_pred CCCCCC--------CCC----CCCC----------chHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEE
Q 018167 154 PYGAVG--------HGG----HYHS----------QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (360)
Q Consensus 154 ~~g~~g--------~~g----~~Hs----------~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i 206 (360)
.+++.- .+. ..+. .-|. .+.+++ |+.-+...++.|+..+++.+++ .++|++|
T Consensus 111 N~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~~p~li 189 (202)
T cd02006 111 NAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL-GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVV 189 (202)
T ss_pred CchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEE
Confidence 544321 000 0010 0132 233333 6777888999999999999985 6899988
No 151
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=83.02 E-value=12 Score=39.12 Aligned_cols=111 Identities=11% Similarity=0.018 Sum_probs=64.9
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|++.+- +=-..++.|.|.+++. -+|++++ ..+ |++..-| |- .+...+ +|+ .+|+...+++..
T Consensus 404 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~e-L~-Ta~~~~------l~i-~~vV~NN~~y~~ 473 (561)
T PRK06048 404 PRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDI-AGDGSFQMNSQE-LA-TAVQND------IPV-IVAILNNGYLGM 473 (561)
T ss_pred CCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEE-EeCchhhccHHH-HH-HHHHcC------CCe-EEEEEECCccHH
Confidence 788997632 2334566777777763 3566665 444 5444322 32 234434 456 555555544321
Q ss_pred --------CCC----CC--CCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HGG----HY--HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~g----~~--Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.++ .. +...-.++.+++ |..-+.-.++.|+..+++++++.++|++|
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~t~~el~~al~~a~~~~~p~li 533 (561)
T PRK06048 474 VRQWQELFYDKRYSHTCIKGSVDFVKLAEAY-GALGLRVEKPSEVRPAIEEAVASDRPVVI 533 (561)
T ss_pred HHHHHHHHcCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 011 10 112222344444 67788899999999999999999999999
No 152
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=82.54 E-value=18 Score=37.63 Aligned_cols=111 Identities=13% Similarity=0.156 Sum_probs=63.7
Q ss_pred CCcEEech-hH-HHHHHHHHHHHhcCC--CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC
Q 018167 85 KSRVFNTP-LC-EQGIVGFAIGLAAMG--NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158 (360)
Q Consensus 85 p~r~i~~G-Ia-E~~~vg~AaGlA~~G--~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~ 158 (360)
|.+|+..+ .. =-..+..|.|.++.. -+|++++ -.| |++..-| +- .+...+ +|+ .+|+...+++.
T Consensus 386 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i-~GDGsf~~~~~e-L~-Ta~~~~------lpi-~ivV~NN~~~g 455 (549)
T PRK06457 386 EQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISF-VGDGGFTMTMME-LI-TAKKYD------LPV-KIIIYNNSKLG 455 (549)
T ss_pred CCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEE-EcccHHhhhHHH-HH-HHHHHC------CCe-EEEEEECCccc
Confidence 67777642 11 111344677777664 4778876 444 4444322 33 244444 466 56666555432
Q ss_pred C-------CCCCC--CC--chHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 159 G-------HGGHY--HS--QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 159 g-------~~g~~--Hs--~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
- .+... +. .-|. ++.+++ |+.-....++.|++..++++++.++|++|
T Consensus 456 ~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 514 (549)
T PRK06457 456 MIKFEQEVMGYPEWGVDLYNPDFTKIAESI-GFKGFRLEEPKEAEEIIEEFLNTKGPAVL 514 (549)
T ss_pred hHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 1 11111 11 1133 334444 67777889999999999999999999998
No 153
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=82.30 E-value=6.1 Score=39.76 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=65.8
Q ss_pred CcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g 162 (360)
=+++.+ ..|+++.-+|-|.|+. |...++..++.+=...++.-|-+ |+.. .+ |+++....-... ..+
T Consensus 39 i~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl~~--A~~~-------~~-Pvl~i~g~~~~~~~~~~ 107 (432)
T TIGR00173 39 LRVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAVIE--ASYS-------GV-PLIVLTADRPPELRGCG 107 (432)
T ss_pred cEEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHHHH--hccc-------CC-cEEEEeCCCCHHHhCCC
Confidence 367766 6999999999999997 54444444666654444444432 2211 23 555443211111 123
Q ss_pred CCCCchHHHHHcCCCCc--EEEeeCC-------HHHHHHHHHHhHhC-CCCEEEeccccc
Q 018167 163 HYHSQSPEAFFCHVPGL--KVVIPRS-------PRQAKGLLLSCIRD-PNPVVFFEPKWL 212 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~--~V~~P~d-------~~e~~~~l~~a~~~-~~P~~i~~~k~l 212 (360)
..+.+....+++.+--. .|-.|.+ +..+..+++.|... +|||||-.|..+
T Consensus 108 ~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 108 ANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred CCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 33445666778766533 3334443 23455555555553 699999888765
No 154
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=81.47 E-value=13 Score=39.31 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=63.7
Q ss_pred CCcEEechhHHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCC
Q 018167 85 KSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG 161 (360)
Q Consensus 85 p~r~i~~GIaE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~ 161 (360)
|.++++...+=-..++.|.|.++.. -+|++.+ -.| |++-....|.+ +...+ .|+ .+|+...+++...+
T Consensus 395 p~~~~~~~~~mG~~~~~AiGa~~a~p~~~Vv~i-~GDG~f~~~g~~eL~t-av~~~------~~i-~~vVlnN~~~g~~~ 465 (595)
T TIGR03336 395 PLGTVDTTLCMGASIGVASGLSKAGEKQRIVAF-IGDSTFFHTGIPGLIN-AVYNK------ANI-TVVILDNRITAMTG 465 (595)
T ss_pred CccccceeeccCchHHHHhhhhhcCCCCCEEEE-eccchhhhcCHHHHHH-HHHcC------CCe-EEEEEcCcceeccC
Confidence 5555554211113344666666553 4677775 444 43333445554 34333 366 56655554432111
Q ss_pred C-CC------------CC--chHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEEe
Q 018167 162 G-HY------------HS--QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (360)
Q Consensus 162 g-~~------------Hs--~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i~ 207 (360)
+ .+ +. ...++---.++...|..|.+.+|+..+++++++.++|.+|.
T Consensus 466 ~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~~gp~li~ 526 (595)
T TIGR03336 466 HQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAAEGVSVII 526 (595)
T ss_pred CCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhcCCCEEEE
Confidence 1 00 11 22222222467778888888899999999999999999984
No 155
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=81.03 E-value=13 Score=38.74 Aligned_cols=146 Identities=12% Similarity=0.181 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHH-HHhCCCcEEechh--HHHHHHHHHHHHhcCCCeeEEEecCcc--
Q 018167 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLA-DRFGKSRVFNTPL--CEQGIVGFAIGLAAMGNRAIAEIQFAD-- 120 (360)
Q Consensus 46 ~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~-~~~gp~r~i~~GI--aE~~~vg~AaGlA~~G~~p~~~~~f~~-- 120 (360)
+-+.|.+.+.+++++++++ |.+ ........+. -.. |.+|++.+. +=-..+..|.|.++..-+|++.+ -.+
T Consensus 371 ~~~~l~~~l~~~~~~ivv~-d~~--~~~~~~~~~~~~~~-p~~~~~~~~~gsmG~~lpaaiGaala~~~~vv~i-~GDGs 445 (554)
T TIGR03254 371 ALEAIRDVLKDNPDIYLVN-EGA--NTLDLARNVIDMYK-PRHRLDVGTWGVMGIGMGYAIAAAVETGKPVVAL-EGDSA 445 (554)
T ss_pred HHHHHHHhcCCCCCEEEEe-CCc--hHHHHHHHhcccCC-CCcEeeCCCCCcCCchHHHHHHHHhcCCCcEEEE-EcCch
Confidence 4566777665545655544 322 1100011222 233 778887642 11134456666666645677775 444
Q ss_pred cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCC-----CC-----CC--CCchHHHHHcCCCCcEEEeeCCHH
Q 018167 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH-----GG-----HY--HSQSPEAFFCHVPGLKVVIPRSPR 188 (360)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~-----~g-----~~--Hs~~d~a~~r~iPn~~V~~P~d~~ 188 (360)
|.+.+-| |-. ++..+ +|+ .+|+...++.... .+ .. +..+-.++.+++ |..-+.-.+++
T Consensus 446 f~m~~~E-L~T-a~r~~------l~v-~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~v~~~~ 515 (554)
T TIGR03254 446 FGFSGME-VET-ICRYN------LPV-CVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAF-GGVGYNVTTPD 515 (554)
T ss_pred hcccHHH-HHH-HHHcC------CCE-EEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHC-CCeEEEeCCHH
Confidence 5444433 432 44444 466 5555555543110 01 00 111112344444 56667779999
Q ss_pred HHHHHHHHhHhCCCCEEE
Q 018167 189 QAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 189 e~~~~l~~a~~~~~P~~i 206 (360)
|+...++++++.++|++|
T Consensus 516 el~~al~~a~~~~~p~lI 533 (554)
T TIGR03254 516 ELKAALNEALASGKPTLI 533 (554)
T ss_pred HHHHHHHHHHhCCCCEEE
Confidence 999999999998999998
No 156
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=81.01 E-value=35 Score=29.49 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=27.2
Q ss_pred HHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 172 FFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 172 ~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
+.++. |+..+.-.++.|++.+++++.+.++|++|
T Consensus 141 ~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~vi 174 (178)
T cd02002 141 IAKAF-GVEAERVETPEELDEALREALAEGGPALI 174 (178)
T ss_pred HHHHc-CCceEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 34443 56666778899999999999998999988
No 157
>PRK08617 acetolactate synthase; Reviewed
Probab=78.90 E-value=14 Score=38.37 Aligned_cols=144 Identities=18% Similarity=0.238 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHH----HHHHHhcCC-CeeEEEecCc
Q 018167 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVG----FAIGLAAMG-NRAIAEIQFA 119 (360)
Q Consensus 45 a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg----~AaGlA~~G-~~p~~~~~f~ 119 (360)
.+.+.|.+.+.+| .++ ..|.+....+ ....+. .+.|.+|+..+ -...+| .|.|.++.. -++++++ -.
T Consensus 369 ~~~~~l~~~l~~~-~ii--~~d~G~~~~~-~~~~~~-~~~p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~vv~i-~G 440 (552)
T PRK08617 369 RIIRALQDIVTDD-TTV--TVDVGSHYIW-MARYFR-SYEPRHLLFSN--GMQTLGVALPWAIAAALVRPGKKVVSV-SG 440 (552)
T ss_pred HHHHHHHHhcCCC-cEE--EeCCcHHHHH-HHHhcc-ccCCCeEEecC--ccccccccccHHHhhHhhcCCCcEEEE-Ee
Confidence 3556677666543 333 3343311111 112222 23477877643 123455 777777653 3566664 44
Q ss_pred c--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCC--------C---CCC-CCchHHHHHcCCCCcEEEeeC
Q 018167 120 D--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH--------G---GHY-HSQSPEAFFCHVPGLKVVIPR 185 (360)
Q Consensus 120 ~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~--------~---g~~-Hs~~d~a~~r~iPn~~V~~P~ 185 (360)
+ |++.+-| |-. +...+ +|+ .+|+...+++... + +.. +..+-.++.+++ |+.-+...
T Consensus 441 DGsf~m~~~e-L~T-a~~~~------lpv-~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~ 510 (552)
T PRK08617 441 DGGFLFSAME-LET-AVRLK------LNI-VHIIWNDGHYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESF-GAKGLRVT 510 (552)
T ss_pred chHHhhhHHH-HHH-HHHhC------CCe-EEEEEECCccchHHHHHHhhcCCcccCCCCCCCHHHHHHHC-CCeEEEEC
Confidence 4 5544423 332 44444 466 5555555443210 0 111 112222334444 67788999
Q ss_pred CHHHHHHHHHHhHhCCCCEEE
Q 018167 186 SPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 186 d~~e~~~~l~~a~~~~~P~~i 206 (360)
++.|++.+++++++.++|++|
T Consensus 511 ~~~eL~~al~~a~~~~~p~li 531 (552)
T PRK08617 511 SPDELEPVLREALATDGPVVI 531 (552)
T ss_pred CHHHHHHHHHHHHhCCCcEEE
Confidence 999999999999998999998
No 158
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=77.94 E-value=14 Score=35.46 Aligned_cols=143 Identities=15% Similarity=0.077 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechh---HHHHHHHHHHHHhcC-CCeeEEEe
Q 018167 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL---CEQGIVGFAIGLAAM-GNRAIAEI 116 (360)
Q Consensus 41 ~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GI---aE~~~vg~AaGlA~~-G~~p~~~~ 116 (360)
....++.++|.++.-...+++ +..|++-.+ .. | +|+++.- .=-..+.+|.|++++ .-++++++
T Consensus 28 ~i~~~i~~al~~l~l~p~d~v-ivsdiG~s~----------~~-~-~yl~~~~~~g~mG~alpaAiGaklA~pd~~VV~i 94 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVV-VVSGIGCSS----------KI-P-GYFLSHGLHTLHGRAIAFATGAKLANPDLEVIVV 94 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEE-EEeCCcHhh----------hh-h-hhcccCccchhhccHHHHHHHHHHHCCCCcEEEE
Confidence 456677777777633233444 445766211 11 1 1222210 002345677777776 34666665
Q ss_pred cCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCC----CC----------C-----CchHHHHHcC
Q 018167 117 QFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGG----HY----------H-----SQSPEAFFCH 175 (360)
Q Consensus 117 ~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g----~~----------H-----s~~d~a~~r~ 175 (360)
-.+ |..-....+.+ ++..+ .|+ .+|+...+++.-..+ ++ + ..+-..+..+
T Consensus 95 -~GDG~~~~mg~~eL~t-A~r~n------l~i-~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a 165 (301)
T PRK05778 95 -GGDGDLASIGGGHFIH-AGRRN------IDI-TVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALA 165 (301)
T ss_pred -eCccHHHhccHHHHHH-HHHHC------CCc-EEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHH
Confidence 344 32233445554 45544 466 566555443211010 00 0 1122233333
Q ss_pred CCCcEEE---eeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 176 VPGLKVV---IPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 176 iPn~~V~---~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
. |..-+ ...++.|+..+++.|+++++|++|
T Consensus 166 ~-G~~~va~~~v~~~~eL~~ai~~A~~~~GpalI 198 (301)
T PRK05778 166 A-GATFVARSFAGDVKQLVELIKKAISHKGFAFI 198 (301)
T ss_pred C-CCCEEEEeccCCHHHHHHHHHHHHhCCCCEEE
Confidence 3 44443 689999999999999999999998
No 159
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=77.81 E-value=8.1 Score=38.41 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=59.5
Q ss_pred EEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcC---CeEEEEeCCCcCCch--HH
Q 018167 233 EVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT---GRLLISHEAPVTGGF--GA 307 (360)
Q Consensus 233 ~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~---~~ivvvEe~~~~GGl--gs 307 (360)
.++.+|.+|+++..|.--+.--+.++. .|.++.+++..+=+|+|.+.+.+.+++. +.|.++.....+|=+ -.
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~ia~~---~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~ 151 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEIAER---YGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLK 151 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHHHHH---hCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHH
Confidence 356678999999999988776665554 4899999999999999999999999854 344555555555533 24
Q ss_pred HHHHHHHHhc
Q 018167 308 EISASILERC 317 (360)
Q Consensus 308 ~v~~~l~~~~ 317 (360)
+|+..+.+++
T Consensus 152 ~I~~~~k~~g 161 (383)
T COG0075 152 EIAKAAKEHG 161 (383)
T ss_pred HHHHHHHHcC
Confidence 5555555543
No 160
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=77.80 E-value=35 Score=34.96 Aligned_cols=183 Identities=15% Similarity=0.216 Sum_probs=93.2
Q ss_pred hHHHHhhhcccccccchh--hHHHHHhhcC---------CCCCCCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCcc
Q 018167 5 LRRFVGSLSRRNLSTACA--NKQLIQQHDG---------GVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVF 73 (360)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~ 73 (360)
+...++.|++..++..++ .++-+++.++ ...++.++++-+++. .+.+++.. ++.+++++.-. + +
T Consensus 334 ~~~L~e~l~~~~~~~~~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~-~vre~L~~-~d~ilVsEGan--t-m 408 (571)
T KOG1185|consen 334 VLQLVEELQDQPWTWGPSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQ-TVRELLPN-DDTILVSEGAN--T-M 408 (571)
T ss_pred HHHHHHHhcCCCcccCCchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHH-HHHHhcCC-CCcEEEecCCc--c-h
Confidence 456677778877888875 3333333221 122344566666553 45555543 44444443211 0 0
Q ss_pred ccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-----CCeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccc
Q 018167 74 RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-----GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNC 146 (360)
Q Consensus 74 ~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-----G~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v 146 (360)
..-..+....+|.|.+|.|-- +-+|+..|+|+. -.+.++++ ..+ |=.-++| +- -+++.+ +|+
T Consensus 409 digr~~l~~~~Pr~rLDaGtf--gTMGVG~Gfalaaa~~~P~~~V~~v-eGDsaFGfSaME-~E-T~vR~~------Lpv 477 (571)
T KOG1185|consen 409 DIGRTLLPPRGPRRRLDAGTF--GTMGVGLGFALAAALAAPDRKVVCV-EGDSAFGFSAME-LE-TFVRYK------LPV 477 (571)
T ss_pred hhhhhhccCCCcccccCCccc--cccccchhHHHHHHhhCCCCeEEEE-ecCcccCcchhh-HH-HHHHhc------CCe
Confidence 011222333349999998832 233444444442 24455554 332 3223333 21 245555 466
Q ss_pred cceEEEcCCCCCCCCCCCCCchHHH---------HHcCCC-----------CcEEEeeCCHHHHHHHHHHhHhC-CCCEE
Q 018167 147 GGLTVRAPYGAVGHGGHYHSQSPEA---------FFCHVP-----------GLKVVIPRSPRQAKGLLLSCIRD-PNPVV 205 (360)
Q Consensus 147 ~~~v~~~~~g~~g~~g~~Hs~~d~a---------~~r~iP-----------n~~V~~P~d~~e~~~~l~~a~~~-~~P~~ 205 (360)
.+|+...+|.+|.+ +|..++++ ...-.+ |.+=+.-.++.|+..+++++.+. ++|++
T Consensus 478 -v~vV~NN~Giyg~d--~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psv 554 (571)
T KOG1185|consen 478 -VIVVGNNNGIYGLD--DDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSV 554 (571)
T ss_pred -EEEEecCCcccccC--cccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeE
Confidence 45545456655433 34344443 111111 33445556999999999999986 59998
Q ss_pred E
Q 018167 206 F 206 (360)
Q Consensus 206 i 206 (360)
|
T Consensus 555 I 555 (571)
T KOG1185|consen 555 I 555 (571)
T ss_pred E
Confidence 8
No 161
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=77.34 E-value=12 Score=28.07 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=37.9
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHh-cCCeEEEEeCCC
Q 018167 240 DITLVGWGA-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAP 300 (360)
Q Consensus 240 dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~-~~~~ivvvEe~~ 300 (360)
++.|++.+. ....|++.+..|+++|+++.+ |.+. +.+... +..+-+ +...++++.+..
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~-~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKK-IREAQLQKIPYILVVGDKE 62 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHH-HHHHHHcCCCEEEEECcch
Confidence 566777765 467899999999999999977 4444 455443 333322 345677776543
No 162
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=76.92 E-value=20 Score=37.53 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=62.1
Q ss_pred CCcEEechhHHHHHH----HHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCC
Q 018167 85 KSRVFNTPLCEQGIV----GFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (360)
Q Consensus 85 p~r~i~~GIaE~~~v----g~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~ 157 (360)
|.+|+..+- .+.+ ..|.|+++.- -++++++ -.+ |++-. ..+- .++..+ +|+ .+|+...+++
T Consensus 398 ~~~~~~s~~--~gsmG~~~paAiGa~la~p~~~vv~i-~GDGsf~~~~-~el~-Ta~~~~------lpv-~~vV~NN~~~ 465 (578)
T PRK06546 398 RRRVIGSFR--HGSMANALPHAIGAQLADPGRQVISM-SGDGGLSMLL-GELL-TVKLYD------LPV-KVVVFNNSTL 465 (578)
T ss_pred CceEEccCC--cccccchhHHHHHHHHhCCCCcEEEE-EcCchHhhhH-HHHH-HHHHhC------CCe-EEEEEECCcc
Confidence 567775432 2333 3777777652 3555554 344 54433 2343 355555 466 5665555443
Q ss_pred CC-------CCCCCC----CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 158 VG-------HGGHYH----SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 158 ~g-------~~g~~H----s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.. .++..+ ..-|. .+.+++ |..-..-.+++|++.+++++++.++|++|
T Consensus 466 g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 525 (578)
T PRK06546 466 GMVKLEMLVDGLPDFGTDHPPVDYAAIAAAL-GIHAVRVEDPKDVRGALREAFAHPGPALV 525 (578)
T ss_pred ccHHHHHHhcCCCcccccCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 21 111111 11233 333444 55566778999999999999999999999
No 163
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=76.27 E-value=7 Score=31.83 Aligned_cols=49 Identities=24% Similarity=0.226 Sum_probs=37.6
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcC
Q 018167 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (360)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~ 290 (360)
|++|.+.-+ -..+.+|.+.|++.|++.+++|+.. .|++.+.|.+.+++.
T Consensus 1 ~i~iy~~p~-C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~ 49 (113)
T cd03033 1 DIIFYEKPG-CANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDL 49 (113)
T ss_pred CEEEEECCC-CHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHc
Confidence 345544433 4567788889999999999999998 899998887777643
No 164
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=76.02 E-value=90 Score=32.11 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=92.0
Q ss_pred CCCCCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeE
Q 018167 34 VGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAI 113 (360)
Q Consensus 34 ~~~~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~ 113 (360)
..++.+.+-.+.++++|... .-+-++.+..= . +. -+..-.++.| -|||.+= .||+++=.|..++.---+|-
T Consensus 8 ~~~~~~~~g~~~vA~~Lk~~--gVe~iFgiVGi-p---V~-el~~aaqalG-Ik~I~~R-nEqaA~yAA~A~gyLt~kpG 78 (571)
T KOG1185|consen 8 VDKASSRHGGELVAAVLKAQ--GVEYIFGIVGI-P---VI-ELAVAAQALG-IKFIGTR-NEQAAVYAASAYGYLTGKPG 78 (571)
T ss_pred ccccccccHHHHHHHHHHHc--CceEEEEEecc-c---hH-HHHHHHHHcC-CeEeecc-cHHHHHHHHHHhhhhcCCCe
Confidence 44455666677788877643 12233333211 1 00 1122345676 8999996 99999988888887544444
Q ss_pred EE-ecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC--CCCCCCCCchHHHHHcCCCCcEEEeeCCHHHH
Q 018167 114 AE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQA 190 (360)
Q Consensus 114 ~~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~--g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~ 190 (360)
++ ..-.+=+.-+.--+.| +-++.| |+++.+.+... -.-|..+....+.++|..=-. +..|.+..+.
T Consensus 79 V~lVvsGPGl~hal~gv~N-A~~n~w---------Pll~IgGsa~~~~~~rGafQe~dQvel~rp~~K~-~~r~~~~~~I 147 (571)
T KOG1185|consen 79 VLLVVSGPGLTHALAGVAN-AQMNCW---------PLLLIGGSASTLLENRGAFQELDQVELFRPLCKF-VARPTSVRDI 147 (571)
T ss_pred EEEEecCChHHHHHHHhhh-hhhccC---------cEEEEecccchhhhcccccccccHHhhhhhhhhh-ccCCCChhhc
Confidence 44 3455555556555555 222332 44444322221 234555656677777765444 6678887777
Q ss_pred HHHHHHhHh-----CCCCEEEecccc
Q 018167 191 KGLLLSCIR-----DPNPVVFFEPKW 211 (360)
Q Consensus 191 ~~~l~~a~~-----~~~P~~i~~~k~ 211 (360)
-..++.|++ .+||+|+=.|-.
T Consensus 148 ~~~i~kA~r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 148 PPTIRKAVRAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred cHHHHHHHHHHhcCCCCceEEecccc
Confidence 666666665 389999977765
No 165
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=75.71 E-value=32 Score=36.06 Aligned_cols=111 Identities=13% Similarity=0.120 Sum_probs=65.6
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC-
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~- 158 (360)
|.+|++.+- +=-..++.|.|.+++. -++++.+ -.+ |++.. ..+- .+...+ +|+ .+|+...+++.
T Consensus 409 p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i-~GDGsf~m~~-~eL~-Ta~~~~------lpv-~~vV~NN~~~g~ 478 (586)
T PRK06276 409 PRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAI-TGDGGFLMNS-QELA-TIAEYD------IPV-VICIFDNRTLGM 478 (586)
T ss_pred CCeEEcCCCccccccchhHHHhhhhhcCCCcEEEE-EcchHhhccH-HHHH-HHHHhC------CCe-EEEEEeCCchHH
Confidence 789997642 3333566777877763 3556654 333 44333 1222 234444 466 56655555421
Q ss_pred ---------C--CCCCCC-CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 159 ---------G--HGGHYH-SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 159 ---------g--~~g~~H-s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
+ ..+.++ ..-|+ ++..++ |..-+.-.+++|++.+++.+++.++|.+|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 538 (586)
T PRK06276 479 VYQWQNLYYGKRQSEVHLGETPDFVKLAESY-GVKADRVEKPDEIKEALKEAIKSGEPYLL 538 (586)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 0 011221 12233 444555 77788889999999999999998999998
No 166
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=74.27 E-value=25 Score=36.64 Aligned_cols=111 Identities=7% Similarity=-0.053 Sum_probs=64.4
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+- +=-..++.|.|.++.. -++++++ -.+ |++-.-| |- .+...+ +|+ .+|+...+++..
T Consensus 404 ~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i-~GDG~f~m~~~e-L~-Ta~~~~------lpv-i~vV~NN~~~~~ 473 (563)
T PRK08527 404 PRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINF-TGDGSILMNIQE-LM-TAVEYK------IPV-INIILNNNFLGM 473 (563)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-ecCchhcccHHH-HH-HHHHhC------CCe-EEEEEECCcchh
Confidence 788887542 1223556777777764 4556664 333 5544433 33 244444 456 555555444221
Q ss_pred --------CC----CCCCC-chHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HG----GHYHS-QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~----g~~Hs-~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.+ ++.+. .-|+ .+.+++ |..-+.-.+++|+..++++++..++|++|
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 533 (563)
T PRK08527 474 VRQWQTFFYEERYSETDLSTQPDFVKLAESF-GGIGFRVTTKEEFDKALKEALESDKVALI 533 (563)
T ss_pred HHHHHHhhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 01 11111 1233 344555 66778889999999999999999999998
No 167
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=74.03 E-value=26 Score=36.66 Aligned_cols=111 Identities=16% Similarity=0.112 Sum_probs=64.1
Q ss_pred CCcEEechh-HH-HHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL-CE-QGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI-aE-~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|++.+- .= -..++.|.|.+++. -++++.+ -.+ |++..-| |- .+...+ +|+ .+|+...+++.-
T Consensus 414 ~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i-~GDGsf~m~~~e-L~-ta~r~~------lpi-~ivV~NN~~~~~ 483 (571)
T PRK07710 414 PDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAI-VGDGGFQMTLQE-LS-VIKELS------LPV-KVVILNNEALGM 483 (571)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchHHhhhHHH-HH-HHHHhC------CCe-EEEEEECchHHH
Confidence 778887532 11 12556677777663 3555554 444 5544433 33 244433 466 566565554320
Q ss_pred --------CCCCC-C----CchHHH-HHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HGGHY-H----SQSPEA-FFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~g~~-H----s~~d~a-~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.+..+ + ..-|++ +.+++ |+.-+...+.+|+..+++++++.++|++|
T Consensus 484 i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 543 (571)
T PRK07710 484 VRQWQEEFYNQRYSHSLLSCQPDFVKLAEAY-GIKGVRIDDELEAKEQLQHAIELQEPVVI 543 (571)
T ss_pred HHHHHHHHhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 11111 1 112333 33444 78888889999999999999999999999
No 168
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=73.78 E-value=35 Score=35.58 Aligned_cols=146 Identities=14% Similarity=0.027 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechh-H-HHHHHHHHHHHhcCC-CeeEEEecCcc-
Q 018167 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD- 120 (360)
Q Consensus 45 a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GI-a-E~~~vg~AaGlA~~G-~~p~~~~~f~~- 120 (360)
.+...|.+.+. ++.+ +..|.+....+ ....+.-.. |.+|++.|- . --..++.|.|++++. -++++.+ ..+
T Consensus 376 ~~~~~l~~~l~--~~~i-i~~d~g~~~~~-~~~~~~~~~-p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i-~GDG 449 (574)
T PRK06882 376 QVVEAIYRLTN--GDAY-VASDVGQHQMF-AALHYPFDK-PRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCV-TGDG 449 (574)
T ss_pred HHHHHHHhhcC--CCeE-EEecCchhHHH-HHHhccccC-CCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEE-Ecch
Confidence 35556666542 3433 34554421112 122233344 789998642 2 223567788888763 3455554 344
Q ss_pred -cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--------CCCCCC-----CchHHHH-HcCCCCcEEEeeC
Q 018167 121 -YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HGGHYH-----SQSPEAF-FCHVPGLKVVIPR 185 (360)
Q Consensus 121 -F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--------~~g~~H-----s~~d~a~-~r~iPn~~V~~P~ 185 (360)
|.+-. ..+-+ ++..+ +|+ .+|+...+++.- .++... ..-|++- .+++ |+.-+.-.
T Consensus 450 ~f~~~~-~eL~t-a~~~~------lpv-~~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~ 519 (574)
T PRK06882 450 SIQMNI-QELST-AKQYD------IPV-VIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAY-GHVGIQID 519 (574)
T ss_pred hhhccH-HHHHH-HHHhC------CCe-EEEEEECchhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHC-CCeEEEeC
Confidence 54433 33443 44444 466 566665554320 111111 1124433 3333 66677889
Q ss_pred CHHHHHHHHHHhHhC-CCCEEE
Q 018167 186 SPRQAKGLLLSCIRD-PNPVVF 206 (360)
Q Consensus 186 d~~e~~~~l~~a~~~-~~P~~i 206 (360)
+.+|+..+++.+++. ++|++|
T Consensus 520 ~~~eL~~al~~a~~~~~~p~li 541 (574)
T PRK06882 520 TPDELEEKLTQAFSIKDKLVFV 541 (574)
T ss_pred CHHHHHHHHHHHHhcCCCcEEE
Confidence 999999999999986 889988
No 169
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=73.71 E-value=11 Score=31.03 Aligned_cols=49 Identities=29% Similarity=0.318 Sum_probs=38.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCC
Q 018167 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~ 291 (360)
++|..+-++ ..+.+|.+.|++.||+.+++|... .|++.+.|.+.++..+
T Consensus 3 itiy~~p~C-~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNPNC-STCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKLG 51 (117)
T ss_pred EEEEeCCCC-hHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHcC
Confidence 445444443 478889999999999999999887 8889988888777655
No 170
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=73.71 E-value=8.4 Score=33.32 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=42.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
++|++-|..-....++++.|++.|+.+=.|-+ ...|.+.|...+.+..+++++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~---~~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGA---RNADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeC---CcCCHHHHHHHhCCCccEEEecC
Confidence 55677777667788899999999977655544 35799999888888788888864
No 171
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=73.70 E-value=39 Score=35.55 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=65.7
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+- +=-..++.|.|.+++. -++++++ -.+ |++.+-| |- -+...+ +|+ .+|+...+++.-
T Consensus 420 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i-~GDG~f~m~~~E-L~-Ta~r~~------lpv-i~vV~NN~~y~~ 489 (595)
T PRK09107 420 PNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDI-AGDASIQMCIQE-MS-TAVQYN------LPV-KIFILNNQYMGM 489 (595)
T ss_pred CCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEE-EcCchhhccHHH-HH-HHHHhC------CCe-EEEEEeCCccHH
Confidence 788987541 1123455666666653 4677775 444 5444422 33 244444 466 566565555421
Q ss_pred --------CCC----CCC-CchHHH-HHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HGG----HYH-SQSPEA-FFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~g----~~H-s~~d~a-~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.++ .+. ..-|++ +.+++ |+.-+.-.++.|+..+++.++..++|.+|
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 549 (595)
T PRK09107 490 VRQWQQLLHGNRLSHSYTEAMPDFVKLAEAY-GAVGIRCEKPGDLDDAIQEMIDVDKPVIF 549 (595)
T ss_pred HHHHHHHHhCCccccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 111 111 112443 44555 77788889999999999999999999999
No 172
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=73.05 E-value=22 Score=36.93 Aligned_cols=146 Identities=13% Similarity=0.071 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc-
Q 018167 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD- 120 (360)
Q Consensus 45 a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~- 120 (360)
.+.+.|.+.+.+| .++ ..|.+....+ ....+.-.. |.+|++.|- +--..++.|.|.+++. -++++.+ ..+
T Consensus 367 ~~~~~l~~~l~~~-~iv--~~d~g~~~~~-~~~~~~~~~-p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~-~GDG 440 (558)
T TIGR00118 367 QVIEELSRVTKDE-AIV--TTDVGQHQMW-AAQFYPFRK-PRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICI-TGDG 440 (558)
T ss_pred HHHHHHHhhCCCC-eEE--EeCCcHHHHH-HHHhcccCC-CCeEEeCCccccccchhhHHHhhhhhCCCCcEEEE-Ecch
Confidence 3566666665443 233 3453311111 112233344 789998642 2333566777877763 3555554 333
Q ss_pred -cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--------CC----CCC-CCchHH-HHHcCCCCcEEEeeC
Q 018167 121 -YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HG----GHY-HSQSPE-AFFCHVPGLKVVIPR 185 (360)
Q Consensus 121 -F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--------~~----g~~-Hs~~d~-a~~r~iPn~~V~~P~ 185 (360)
|++..-+ +- .++..+ +|+ .+|+...+++.. .+ ..+ +..-|+ .+.+++ |+.-+.-.
T Consensus 441 ~f~~~~~e-L~-ta~~~~------l~~-~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~ 510 (558)
T TIGR00118 441 SFQMNLQE-LS-TAVQYD------IPV-KILILNNRYLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAY-GIKGIRIE 510 (558)
T ss_pred HHhccHHH-HH-HHHHhC------CCe-EEEEEeCCchHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHC-CCeEEEEC
Confidence 5543322 33 244444 466 555555544321 01 111 112343 344444 67778888
Q ss_pred CHHHHHHHHHHhHhCCCCEEE
Q 018167 186 SPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 186 d~~e~~~~l~~a~~~~~P~~i 206 (360)
+++|++.+++++++.++|++|
T Consensus 511 ~~~~l~~al~~a~~~~~p~li 531 (558)
T TIGR00118 511 KPEELDEKLKEALSSNEPVLL 531 (558)
T ss_pred CHHHHHHHHHHHHhCCCCEEE
Confidence 999999999999999999998
No 173
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=72.93 E-value=46 Score=30.85 Aligned_cols=101 Identities=11% Similarity=0.105 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcC------CCeeEEEecCcccHH-HHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCC---C
Q 018167 97 GIVGFAIGLAAM------GNRAIAEIQFADYIF-PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH---S 166 (360)
Q Consensus 97 ~~vg~AaGlA~~------G~~p~~~~~f~~F~~-ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~H---s 166 (360)
..++.|.|+|+. ..++|+-+--..|.+ ..++.+.. ++..++ +. .+++....+. +..+.++ .
T Consensus 109 ~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~-a~~~~l------~~-li~vvdnN~~-~~~~~~~~~~~ 179 (255)
T cd02012 109 QGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASF-AGHYKL------DN-LIAIVDSNRI-QIDGPTDDILF 179 (255)
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHH-HHHcCC------Cc-EEEEEECCCc-cccCcHhhccC
Confidence 345577777765 445554432333432 45666663 555453 33 2444454443 2233322 2
Q ss_pred chHH-HHHcCCCCcEEEeeC--CHHHHHHHHHHhHhC-CCCEEEe
Q 018167 167 QSPE-AFFCHVPGLKVVIPR--SPRQAKGLLLSCIRD-PNPVVFF 207 (360)
Q Consensus 167 ~~d~-a~~r~iPn~~V~~P~--d~~e~~~~l~~a~~~-~~P~~i~ 207 (360)
.+|+ ..++++ |+.++.-. |..++..+++.+.+. ++|++|.
T Consensus 180 ~~~~~~~~~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~ 223 (255)
T cd02012 180 TEDLAKKFEAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLII 223 (255)
T ss_pred chhHHHHHHHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEE
Confidence 3444 445555 77777777 899999999999876 8999984
No 174
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=72.52 E-value=47 Score=29.15 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--
Q 018167 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (360)
Q Consensus 46 ~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~-- 120 (360)
+.+.|.+.+..| .+++ .|.+.. .+ ....+.-.. |.+|+..+- +=-..++.|.|+++.- -++++.+ ..+
T Consensus 7 ~~~~l~~~l~~~-~iiv--~d~g~~-~~-~~~~~~~~~-~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i-~GDG~ 79 (183)
T cd02005 7 LWQQVQNFLKPN-DILV--AETGTS-WF-GALDLKLPK-GTRFISQPLWGSIGYSVPAALGAALAAPDRRVILL-VGDGS 79 (183)
T ss_pred HHHHHHHhcCCC-CEEE--ECCchH-HH-hhhhccCCC-CCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEE-ECCch
Confidence 455565555433 3443 344421 11 122233333 678887521 1112445666766652 3566664 444
Q ss_pred cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC----CCC-CCCC---chHH-HHHcCC---CCcEEEeeCCHH
Q 018167 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG----HGG-HYHS---QSPE-AFFCHV---PGLKVVIPRSPR 188 (360)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g----~~g-~~Hs---~~d~-a~~r~i---Pn~~V~~P~d~~ 188 (360)
|.+-..| +.+ ++..+ +|+ .+|+...+++.- .+. ..+. .-|. .+..+. |+...+...++.
T Consensus 80 f~~~~~e-l~t-a~~~~------~p~-~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~ 150 (183)
T cd02005 80 FQMTVQE-LST-MIRYG------LNP-IIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEG 150 (183)
T ss_pred hhccHHH-HHH-HHHhC------CCC-EEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCHH
Confidence 5443333 443 44333 366 566555544321 111 1111 1232 333433 236777789999
Q ss_pred HHHHHHHHhHh-CCCCEEE
Q 018167 189 QAKGLLLSCIR-DPNPVVF 206 (360)
Q Consensus 189 e~~~~l~~a~~-~~~P~~i 206 (360)
|+..+++++++ .++|++|
T Consensus 151 el~~al~~a~~~~~~p~li 169 (183)
T cd02005 151 ELDEALKDALFNRDKLSLI 169 (183)
T ss_pred HHHHHHHHHHhcCCCcEEE
Confidence 99999999998 7899988
No 175
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=72.22 E-value=37 Score=35.75 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=29.7
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 171 a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
++.+++ |+.-+.-.+..|+..+++.+++.++|++|
T Consensus 507 ~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 541 (597)
T PRK08273 507 RFAELL-GLKGIRVDDPEQLGAAWDEALAADRPVVL 541 (597)
T ss_pred HHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 344454 77788889999999999999999999999
No 176
>PRK08322 acetolactate synthase; Reviewed
Probab=71.94 E-value=41 Score=34.79 Aligned_cols=111 Identities=12% Similarity=0.067 Sum_probs=61.9
Q ss_pred CCcEEec-hhHH-HHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNT-PLCE-QGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~-GIaE-~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+.. |..= -..++.|.|.+++. -++++.+ -.+ |++..-| +-+ +...+ +|+ .+|+...+++.-
T Consensus 396 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i-~GDGsf~m~~~e-L~T-a~~~~------lpv-~iiV~NN~~~g~ 465 (547)
T PRK08322 396 PNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAV-CGDGGFMMNSQE-LET-AVRLG------LPL-VVLILNDNAYGM 465 (547)
T ss_pred CCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEE-EcchhHhccHHH-HHH-HHHhC------CCe-EEEEEeCCCcch
Confidence 6777743 2211 12456777777763 4566664 344 4433322 322 23333 466 555555444321
Q ss_pred -------CCC----CCCCchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 -------HGG----HYHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 -------~~g----~~Hs~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
..+ +..+.-|. ++.++. |+.-+...+++|++.+++++++.++|++|
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 523 (547)
T PRK08322 466 IRWKQENMGFEDFGLDFGNPDFVKYAESY-GAKGYRVESADDLLPTLEEALAQPGVHVI 523 (547)
T ss_pred HHHHHHhhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 011 11111133 333444 77788889999999999999999999998
No 177
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=71.82 E-value=10 Score=29.15 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=45.3
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhc-----CCeEEEEeCCCcCCchHHH
Q 018167 238 GSDITLVGWG----AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-----TGRLLISHEAPVTGGFGAE 308 (360)
Q Consensus 238 G~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~-----~~~ivvvEe~~~~GGlgs~ 308 (360)
.++|+|++.| +.-..+.+|.+.|++.|++.+.+|+.. |.+ +++.+.+ +-..|++.. ...||+...
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~-~~~~l~~~~g~~tvP~vfi~g-~~iGG~~~l 80 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEE-VRQGLKEYSNWPTFPQLYVNG-ELVGGCDIV 80 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHH-HHHHHHHHhCCCCCCEEEECC-EEEeCHHHH
Confidence 4789999988 356788899999999999999999763 333 2232222 224456654 467998664
Q ss_pred HH
Q 018167 309 IS 310 (360)
Q Consensus 309 v~ 310 (360)
.+
T Consensus 81 ~~ 82 (90)
T cd03028 81 KE 82 (90)
T ss_pred HH
Confidence 43
No 178
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=71.62 E-value=44 Score=34.66 Aligned_cols=111 Identities=7% Similarity=0.017 Sum_probs=65.0
Q ss_pred CCcEEechhH--HHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPLC--EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GIa--E~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+-. =-..++.|.|.++.. -+|++++ -.+ |++..-| +-. +...+ +|+ .+|+...+++.-
T Consensus 391 ~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i-~GDG~f~~~~~e-L~t-a~~~~------l~v-~ivV~NN~~~~~ 460 (548)
T PRK08978 391 PENFITSSGLGTMGFGLPAAIGAQVARPDDTVICV-SGDGSFMMNVQE-LGT-IKRKQ------LPV-KIVLLDNQRLGM 460 (548)
T ss_pred CCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEE-EccchhhccHHH-HHH-HHHhC------CCe-EEEEEeCCccHH
Confidence 7888875321 112356777777663 5677775 444 5443322 322 34333 466 566665544320
Q ss_pred --------CC----CCCC-CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HG----GHYH-SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~----g~~H-s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.+ ++.. ..-|. .+.+++ |..-....+++|+..+++++++.++|.+|
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 520 (548)
T PRK08978 461 VRQWQQLFFDERYSETDLSDNPDFVMLASAF-GIPGQTITRKDQVEAALDTLLNSEGPYLL 520 (548)
T ss_pred HHHHHHHHhCCcceecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 01 1111 11233 344444 77788889999999999999999999998
No 179
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=71.56 E-value=15 Score=38.69 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC--CC---C---------
Q 018167 97 GIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GH---G--------- 161 (360)
Q Consensus 97 ~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~--g~---~--------- 161 (360)
..+|+|.|++.. ..++|..+-=++|..-....|+| +.+++ .++ .+++.+..... |+ -
T Consensus 432 ssig~a~g~~~~~~k~~va~iGDsTF~HsGi~~l~n-AV~n~------~~~-~~vvLdN~~tAMTGgQp~pg~~~~~~g~ 503 (640)
T COG4231 432 SSIGIAGGLSFASTKKIVAVIGDSTFFHSGILALIN-AVYNK------ANI-LVVVLDNRTTAMTGGQPHPGTGVAAEGT 503 (640)
T ss_pred chhhhccccccccCCceEEEeccccccccCcHHHHH-HHhcC------CCe-EEEEEeccchhccCCCCCCCcccccCCC
Confidence 457788888865 45566555345576667777887 44454 355 45555432211 10 0
Q ss_pred -CCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEEeccc
Q 018167 162 -GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPK 210 (360)
Q Consensus 162 -g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i~~~k 210 (360)
.+.|.++.+.=-..+--+.++.|.|..++...++.+++.++|.+|...+
T Consensus 504 ~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~~gpsViiak~ 553 (640)
T COG4231 504 KSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEVPGPSVIIAKR 553 (640)
T ss_pred ccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcCCCceEEEEcC
Confidence 1123445443334455677778999999999999999999999996443
No 180
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=71.45 E-value=11 Score=33.10 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhHhCCCCEEEeccccccccCcccC----CCCCcccC--------CCceEEeeeCCcEEEEEechhHHHHH
Q 018167 187 PRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEV----PEDDYMLP--------LSEAEVIREGSDITLVGWGAQLSIME 254 (360)
Q Consensus 187 ~~e~~~~l~~a~~~~~P~~i~~~k~l~r~~~~~v----~~~~~~~~--------~Gk~~vl~~G~dv~Iia~G~~~~~al 254 (360)
-+|..++|-+|+-.+|-+|| .-+.. +.-+ -....+++ .++...+.+-..|.|++-.+.-..|.
T Consensus 24 iedaARlLAQA~vgeG~IYi----~G~~E-m~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~ 98 (172)
T PF10740_consen 24 IEDAARLLAQAIVGEGTIYI----YGFGE-MEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAV 98 (172)
T ss_dssp HHHHHHHHHHHHHTT--EEE----EE-GG-GGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHH
T ss_pred HHHHHHHHHHHHhcCCEEEE----EecCh-HHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHH
Confidence 36788899999999999999 32211 1100 00111111 12223344556788999888888999
Q ss_pred HHHHHHHhcCCCeeEEE
Q 018167 255 QACLDAEKEGISCELID 271 (360)
Q Consensus 255 ~Aa~~L~~~Gi~v~Vi~ 271 (360)
+.+++|.++|+++-+|.
T Consensus 99 ~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 99 ALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHHHHT--EEEEE
T ss_pred HHHHHHHHCCCCEEEEE
Confidence 99999999999998887
No 181
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=70.80 E-value=6.7 Score=31.47 Aligned_cols=41 Identities=32% Similarity=0.393 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCC
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~ 291 (360)
-..+.+|.+.|++.|++++.+|+.. .|++.+.|.+.++..+
T Consensus 6 C~t~rka~~~L~~~gi~~~~~d~~k-~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 6 CSTCRKALKWLEENGIEYEFIDYKK-EPLSREELRELLSKLG 46 (110)
T ss_dssp -HHHHHHHHHHHHTT--EEEEETTT-S---HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCeEeehhhh-CCCCHHHHHHHHHHhc
Confidence 3567888999999999999999987 7899988877776544
No 182
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=70.38 E-value=33 Score=35.83 Aligned_cols=147 Identities=13% Similarity=0.181 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCccccchh-HHHHhCCCcEEechh-HH-HHHHHHHHHHhcCCCeeEEEecCcc-
Q 018167 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTG-LADRFGKSRVFNTPL-CE-QGIVGFAIGLAAMGNRAIAEIQFAD- 120 (360)
Q Consensus 45 a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~-~~~~~gp~r~i~~GI-aE-~~~vg~AaGlA~~G~~p~~~~~f~~- 120 (360)
.+.+.|.+.+.+.++.+++. |.+ ........ +.-.. |.++++.+- .= -..++.|.|.+++--+|++.+ -.+
T Consensus 377 ~~~~~l~~~l~~~~d~iv~~-~~~--~~~~~~~~~~~~~~-p~~~~~~~~~gsmG~glpaaiGa~la~~~~vv~i-~GDG 451 (569)
T PRK09259 377 NALGAIRDVLKENPDIYLVN-EGA--NTLDLARNIIDMYK-PRHRLDCGTWGVMGIGMGYAIAAAVETGKPVVAI-EGDS 451 (569)
T ss_pred HHHHHHHHHhCCCCCEEEEe-Cch--HHHHHHHHhcccCC-CCceEeCCCCccccccHHHHHHHHhcCCCcEEEE-ecCc
Confidence 35567777775445666544 422 11000111 12234 788887642 11 124556777666645666665 443
Q ss_pred -cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC-C------C-CC---CCC-CchHH-HHHcCCCCcEEEeeCC
Q 018167 121 -YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-G------H-GG---HYH-SQSPE-AFFCHVPGLKVVIPRS 186 (360)
Q Consensus 121 -F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~-g------~-~g---~~H-s~~d~-a~~r~iPn~~V~~P~d 186 (360)
|.+..-| +-. ++..+ +|+ .+|+...++.. + . .. ... ..-|. ++.+++ |..-+.-.+
T Consensus 452 ~f~m~~~E-L~T-a~r~~------lpi-~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~ 521 (569)
T PRK09259 452 AFGFSGME-VET-ICRYN------LPV-TVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAF-GGVGYNVTT 521 (569)
T ss_pred cccccHHH-HHH-HHHcC------CCE-EEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHC-CCeEEEECC
Confidence 4444323 332 34434 466 56655555421 0 0 01 111 11133 333444 566777899
Q ss_pred HHHHHHHHHHhHhCCCCEEE
Q 018167 187 PRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 187 ~~e~~~~l~~a~~~~~P~~i 206 (360)
+.|+..++++++..++|++|
T Consensus 522 ~~el~~al~~a~~~~~p~lI 541 (569)
T PRK09259 522 PDELRHALTEAIASGKPTLI 541 (569)
T ss_pred HHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999998
No 183
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=70.26 E-value=51 Score=34.46 Aligned_cols=111 Identities=11% Similarity=-0.009 Sum_probs=63.5
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcC-CCeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~-G~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|++.|= +=-..+..|.|.++. .-+|++++ -.+ |++..-| |-. +...+ +|+ .+|+...+++.-
T Consensus 413 p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i-~GDG~f~m~~~e-L~T-a~r~~------lpv-~ivV~NN~~y~~ 482 (574)
T PRK06466 413 PNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACV-TGEGSIQMNIQE-LST-CLQYG------LPV-KIINLNNGALGM 482 (574)
T ss_pred CCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEE-EcchhhhccHHH-HHH-HHHhC------CCe-EEEEEeCCccHH
Confidence 788887641 111235567777765 34666665 444 4443322 332 34334 466 566555554320
Q ss_pred --------CCC----CCC-CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCCEEE
Q 018167 160 --------HGG----HYH-SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (360)
Q Consensus 160 --------~~g----~~H-s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-~~P~~i 206 (360)
.++ ..- ..-|+ ++.+++ |..-+...++.|+..+++++++. ++|++|
T Consensus 483 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~p~lI 543 (574)
T PRK06466 483 VRQWQDMQYEGRHSHSYMESLPDFVKLAEAY-GHVGIRITDLKDLKPKLEEAFAMKDRLVFI 543 (574)
T ss_pred HHHHHHHhcCCceeecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 111 110 11233 333444 67778889999999999999986 999998
No 184
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=68.91 E-value=50 Score=34.14 Aligned_cols=147 Identities=17% Similarity=0.190 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEech-hH-HHHHHHHHHHHhcCC-CeeEEEecCcc
Q 018167 44 SAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTP-LC-EQGIVGFAIGLAAMG-NRAIAEIQFAD 120 (360)
Q Consensus 44 ~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~G-Ia-E~~~vg~AaGlA~~G-~~p~~~~~f~~ 120 (360)
..+.++|.+.+.++ .+++ .|.+....+ ....+.-.. |.+|+..+ .. =-..++.|.|.++.. -++++.+ -.+
T Consensus 362 ~~~~~~l~~~l~~~-~ii~--~d~G~~~~~-~~~~~~~~~-~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i-~GD 435 (539)
T TIGR02418 362 LEIIKAMQAIVTDD-VTVT--VDMGSHYIW-MARYFRSYR-ARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSV-SGD 435 (539)
T ss_pred HHHHHHHHhhCCCC-CEEE--ECCcHHHHH-HHHhcccCC-CCceecCCCccccccHHHHHHHHHHhCCCCcEEEE-Ecc
Confidence 34566666665433 3333 343311111 112232233 78887542 11 113445677777652 3566664 344
Q ss_pred --cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--------CC---CCC-CCchHHHHHcCCCCcEEEeeCC
Q 018167 121 --YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HG---GHY-HSQSPEAFFCHVPGLKVVIPRS 186 (360)
Q Consensus 121 --F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--------~~---g~~-Hs~~d~a~~r~iPn~~V~~P~d 186 (360)
|.+..-| |-. +...+ +|+ .+|+...+++.. .+ +.. +...-..+.+++ |+.-....+
T Consensus 436 Gsf~m~~~e-L~T-a~~~~------lpi-~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~ 505 (539)
T TIGR02418 436 GGFLFSSME-LET-AVRLK------LNI-VHIIWNDNGYNMVEFQEEMKYQRSSGVDFGPIDFVKYAESF-GAKGLRVES 505 (539)
T ss_pred hhhhchHHH-HHH-HHHhC------CCe-EEEEEECCcchHHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEECC
Confidence 5444322 332 44444 466 555555544321 01 111 112223444555 777888999
Q ss_pred HHHHHHHHHHhHhCCCCEEE
Q 018167 187 PRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 187 ~~e~~~~l~~a~~~~~P~~i 206 (360)
+.|+..+++++++.++|.+|
T Consensus 506 ~~eL~~al~~a~~~~~p~lI 525 (539)
T TIGR02418 506 PDQLEPTLRQAMEVEGPVVV 525 (539)
T ss_pred HHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999999
No 185
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=68.70 E-value=11 Score=30.12 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCC
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~ 291 (360)
-..+.+|.+.|++.|++.+++|+.. .|++.+.|.+.+++.+
T Consensus 9 C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 9 CDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 4567888889999999999999988 8999999888877554
No 186
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=68.28 E-value=44 Score=34.96 Aligned_cols=149 Identities=16% Similarity=0.174 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHH--HHHHHHHHHhcCC-CeeEEEecCc
Q 018167 43 YSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQ--GIVGFAIGLAAMG-NRAIAEIQFA 119 (360)
Q Consensus 43 r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~--~~vg~AaGlA~~G-~~p~~~~~f~ 119 (360)
-..+-+.|.+++.. + .+++.|++....+ ....+.-. .|.+|+..|--=. ..+..|.|.++.- -++++++ -.
T Consensus 361 p~~v~~~l~~~~~~--d-aiv~~d~G~~~~w-~a~~~~~~-~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i-~G 434 (550)
T COG0028 361 PQYVIKVLRELLPD--D-AIVVTDVGQHQMW-AARYFDFY-RPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAI-AG 434 (550)
T ss_pred HHHHHHHHHHhCCC--C-eEEEeCCcHHHHH-HHHhcccC-CCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEE-Ec
Confidence 33444555555443 2 2344566522211 11222223 3788888642111 1223444444442 3677776 44
Q ss_pred c--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--------CCCC-CCC--chH-HHHHcCCCCcEEEeeC
Q 018167 120 D--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HGGH-YHS--QSP-EAFFCHVPGLKVVIPR 185 (360)
Q Consensus 120 ~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--------~~g~-~Hs--~~d-~a~~r~iPn~~V~~P~ 185 (360)
+ |++..-| +-. +...+ +|+ ++|+...+++.. .++. .+. ... ..-+..==|+.-+.-.
T Consensus 435 DG~F~m~~qE-L~T-a~r~~------lpv-~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~ 505 (550)
T COG0028 435 DGGFMMNGQE-LET-AVRYG------LPV-KIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE 505 (550)
T ss_pred ccHHhccHHH-HHH-HHHhC------CCE-EEEEEECCccccchHHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEeC
Confidence 4 6554333 322 33333 467 666665543211 1111 111 111 2222222266777778
Q ss_pred CHHHHHHHHHHhHhCCCCEEE
Q 018167 186 SPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 186 d~~e~~~~l~~a~~~~~P~~i 206 (360)
+++|++.+++.|+..++|++|
T Consensus 506 ~~~el~~al~~al~~~~p~li 526 (550)
T COG0028 506 TPEELEEALEEALASDGPVLI 526 (550)
T ss_pred CHHHHHHHHHHHHhCCCCEEE
Confidence 999999999999999999888
No 187
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=67.94 E-value=88 Score=27.82 Aligned_cols=105 Identities=18% Similarity=0.219 Sum_probs=54.7
Q ss_pred EEechhHHHHHHHHHHHHhcC----C-CeeEEEecCcccH-H--HHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 88 VFNTPLCEQGIVGFAIGLAAM----G-NRAIAEIQFADYI-F--PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 88 ~i~~GIaE~~~vg~AaGlA~~----G-~~p~~~~~f~~F~-~--ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
.+.+|.- -..+++|.|+|+. | -++++++ ..+-- + ..++-+.. ++..+ .|+ .+ ++...+..
T Consensus 71 ~~~~G~l-G~gl~~A~G~Ala~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~~-A~~~~------~~l-i~-vvdnN~~~- 138 (195)
T cd02007 71 AFGTGHS-STSISAALGMAVARDLKGKKRKVIAV-IGDGALTGGMAFEALNN-AGYLK------SNM-IV-ILNDNEMS- 138 (195)
T ss_pred eECCCch-hhhHHHHHHHHHHHHHhCCCCeEEEE-EcccccccChHHHHHHH-HHHhC------CCE-EE-EEECCCcc-
Confidence 3445422 3456677777775 2 2344443 44432 2 44565553 44332 355 33 34443322
Q ss_pred CCCCCCCchHHHHHcCCCCcE---EEeeCCHHHHHHHHHHhHhCCCCEEEe
Q 018167 160 HGGHYHSQSPEAFFCHVPGLK---VVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (360)
Q Consensus 160 ~~g~~Hs~~d~a~~r~iPn~~---V~~P~d~~e~~~~l~~a~~~~~P~~i~ 207 (360)
..+++... ...+++. |+. ++...|..++..+++.+.+.++|++|.
T Consensus 139 ~~~~~~~~--~~~~~a~-G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~ 186 (195)
T cd02007 139 ISPNVGTP--GNLFEEL-GFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLH 186 (195)
T ss_pred cCCCCCCH--HHHHHhc-CCCccceECCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 22222222 2334432 333 346668889999998887778999983
No 188
>PRK06154 hypothetical protein; Provisional
Probab=67.69 E-value=71 Score=33.38 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=63.1
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+- +=-..++.|.|.++.- -+|++++ ..+ |++..-| |-. +...+ +|+ .+|+...+++..
T Consensus 421 p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i-~GDG~f~m~~~E-L~T-a~r~~------lpi-~~vV~NN~~yg~ 490 (565)
T PRK06154 421 PGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINL-WGDAAFGMTGMD-FET-AVRER------IPI-LTILLNNFSMGG 490 (565)
T ss_pred CCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEE-EcchHHhccHHH-HHH-HHHhC------CCe-EEEEEECCccce
Confidence 789987542 1113455666666652 4677765 444 4443322 332 44444 466 555555544321
Q ss_pred C-------CCCCCC---chHHH-HHcCCCCcEEEeeCCHHHHHHHHHHhHh---CCCCEEE
Q 018167 160 H-------GGHYHS---QSPEA-FFCHVPGLKVVIPRSPRQAKGLLLSCIR---DPNPVVF 206 (360)
Q Consensus 160 ~-------~g~~Hs---~~d~a-~~r~iPn~~V~~P~d~~e~~~~l~~a~~---~~~P~~i 206 (360)
. ++.... .-|.+ +.+++ |+.-+.-.+++|+..+++.++. .++|++|
T Consensus 491 ~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~~~~~~~p~lI 550 (565)
T PRK06154 491 YDKVMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALRKVKEGTPALL 550 (565)
T ss_pred eehhhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhccCCCeEEE
Confidence 1 111110 12443 44444 7777888999999999999986 5789988
No 189
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=67.56 E-value=39 Score=35.44 Aligned_cols=111 Identities=10% Similarity=0.017 Sum_probs=65.1
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|++.+- +=-..++.|.|.+++- -++++++ -.+ |.+.+-| |- -+...+ +|+ .+|+...+++.-
T Consensus 427 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i-~GDGsf~m~~~e-L~-Ta~r~~------lpv-iivV~NN~~~~~ 496 (587)
T PRK06965 427 PRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCI-TGEGSIQMCIQE-LS-TCLQYD------TPV-KIISLNNRYLGM 496 (587)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchhhhcCHHH-HH-HHHHcC------CCe-EEEEEECCcchH
Confidence 789997642 3444567788888773 3566664 444 5444322 32 234444 466 555555544310
Q ss_pred --------CCCCC-C----CchHHH-HHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCCEEE
Q 018167 160 --------HGGHY-H----SQSPEA-FFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (360)
Q Consensus 160 --------~~g~~-H----s~~d~a-~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-~~P~~i 206 (360)
.++.. + ..-|++ +-+++ |..-+.-.+..|+..+++.|++. ++|++|
T Consensus 497 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~li 557 (587)
T PRK06965 497 VRQWQEIEYSKRYSHSYMDALPDFVKLAEAY-GHVGMRIEKTSDVEPALREALRLKDRTVFL 557 (587)
T ss_pred HHHHHHHhcCCCccccCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 11111 1 111333 33444 67788889999999999999984 889998
No 190
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=67.41 E-value=23 Score=26.08 Aligned_cols=56 Identities=20% Similarity=0.121 Sum_probs=35.1
Q ss_pred cEEEEEechh-HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhc-CCeEEEEeC
Q 018167 240 DITLVGWGAQ-LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-TGRLLISHE 298 (360)
Q Consensus 240 dv~Iia~G~~-~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~-~~~ivvvEe 298 (360)
++.|++.+.. ...|++.+..|+++|+.+.+.... +.++ +.+..+-+. ...++++.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~-~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLK-KQFKYADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHH-HHHHHHHHcCCCEEEEEcH
Confidence 6778887763 568999999999999988764432 2333 334333222 345566654
No 191
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=67.22 E-value=25 Score=28.55 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=37.8
Q ss_pred CcEEEEEec--h-hHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHh-cCCeEEEEeCC
Q 018167 239 SDITLVGWG--A-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEA 299 (360)
Q Consensus 239 ~dv~Iia~G--~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~-~~~~ivvvEe~ 299 (360)
.++.|++.+ . ....|++.++.|+++|+++.+-+ . +.+..+ +..+-+ +...++++.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~-~--~sl~kq-lk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDD-S--GSIGRR-YARQDEIGTPFCVTVDFD 87 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeC-C--CCHHHH-HHHhHhcCCCEEEEECcC
Confidence 567888888 4 45788999999999999998743 3 455433 333322 34567777654
No 192
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=67.04 E-value=59 Score=34.35 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=61.4
Q ss_pred CCcEEechh-HH-HHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL-CE-QGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI-aE-~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+- .- -..+..|.|.+++. -|+++++ ..+ |++..-| |-. +...+ +|+ .+|+...+++.-
T Consensus 424 p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i-~GDG~f~m~~~e-L~T-a~r~~------lpv-i~vV~NN~~~g~ 493 (616)
T PRK07418 424 PRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICI-AGDASFLMNIQE-LGT-LAQYG------INV-KTVIINNGWQGM 493 (616)
T ss_pred CCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEE-EcchHhhhhHHH-HHH-HHHhC------CCe-EEEEEECCcchH
Confidence 788886531 11 11344556666552 4677775 444 5444323 332 34433 466 555555443210
Q ss_pred --------CC----CCC-C-CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HG----GHY-H-SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~----g~~-H-s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.+ +.. + ..-|. .+.+++ |++-+.-.+++|+..+++.+++.++|++|
T Consensus 494 i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~g~~V~~~~el~~al~~a~~~~~p~lI 554 (616)
T PRK07418 494 VRQWQESFYGERYSASNMEPGMPDFVKLAEAF-GVKGMVISERDQLKDAIAEALAHDGPVLI 554 (616)
T ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 00 000 0 11233 333444 67777889999999999999999999998
No 193
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=66.94 E-value=54 Score=34.26 Aligned_cols=111 Identities=12% Similarity=-0.020 Sum_probs=63.5
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+- +=-..++.|.|.++.. -++++++ -.+ |++-.-| |- -+...+ +|+ .+|+...+++.-
T Consensus 411 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i-~GDG~f~m~~~E-L~-Ta~r~~------lpv-~~vV~NN~~y~~ 480 (572)
T PRK08979 411 PRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCV-TGDGSIQMNIQE-LS-TALQYD------IPV-KIINLNNRFLGM 480 (572)
T ss_pred CCeEEccCCcccccchhhHHHhhhhhCCCCeEEEE-EcchHhhccHHH-HH-HHHHcC------CCe-EEEEEeCCccHH
Confidence 688887642 1123455666666663 3566664 444 5544433 33 244444 466 566555554320
Q ss_pred --------CCCC-CC----CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCCEEE
Q 018167 160 --------HGGH-YH----SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (360)
Q Consensus 160 --------~~g~-~H----s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-~~P~~i 206 (360)
.++. .+ ..-|+ ++.+++ |..-..-.++.|+..+++.+++. ++|++|
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lI 541 (572)
T PRK08979 481 VKQWQDMIYQGRHSHSYMDSVPDFAKIAEAY-GHVGIRISDPDELESGLEKALAMKDRLVFV 541 (572)
T ss_pred HHHHHHHHhCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 1111 11 11133 344444 66778889999999999999985 899988
No 194
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=65.84 E-value=19 Score=30.18 Aligned_cols=66 Identities=15% Similarity=0.338 Sum_probs=44.2
Q ss_pred chhHHHHHHHHHHHHhcCCCeeEEEeccc-cCC-------------cHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHH
Q 018167 247 GAQLSIMEQACLDAEKEGISCELIDLKTL-IPW-------------DKETVEASVRKTGRLLISHEAPVTGGFGAEISAS 312 (360)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~i-kP~-------------d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~ 312 (360)
|++...+..+++.|++.|++++++|++.. .|+ |.+.+.+.++..+.+|++--- ..|++.+.+..+
T Consensus 14 ~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~-y~~~~s~~lK~~ 92 (152)
T PF03358_consen 14 SNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPV-YNGSVSGQLKNF 92 (152)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEE-BTTBE-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecE-EcCcCChhhhHH
Confidence 44566677777788888999999999986 222 224466777788887766432 356666666554
Q ss_pred H
Q 018167 313 I 313 (360)
Q Consensus 313 l 313 (360)
+
T Consensus 93 l 93 (152)
T PF03358_consen 93 L 93 (152)
T ss_dssp H
T ss_pred H
Confidence 4
No 195
>PRK10853 putative reductase; Provisional
Probab=64.74 E-value=13 Score=30.51 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcC
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~ 290 (360)
-..+.+|.+.|++.|++++++|+.. .|++.+.|.+.+.+.
T Consensus 10 C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 10 CDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDEL 49 (118)
T ss_pred CHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHc
Confidence 4567888889999999999999988 899999888777654
No 196
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=64.37 E-value=21 Score=26.00 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=41.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhc-CCeEEEEeCCCcCCchHHH
Q 018167 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-TGRLLISHEAPVTGGFGAE 308 (360)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~-~~~ivvvEe~~~~GGlgs~ 308 (360)
+++|.+.-. -..|.+|.+.|++.|++.+.+|+..-.+ ..+.+.+.... +-..|++.. ...||+-+.
T Consensus 2 ~v~ly~~~~-C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i~~-~~iGg~~~~ 68 (73)
T cd03027 2 RVTIYSRLG-CEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFFNE-KLVGGLTDL 68 (73)
T ss_pred EEEEEecCC-ChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEECC-EEEeCHHHH
Confidence 456666543 4668889999999999999999876332 22334444332 234555544 567887553
No 197
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=64.10 E-value=88 Score=32.68 Aligned_cols=109 Identities=16% Similarity=0.106 Sum_probs=61.5
Q ss_pred cEEec-hh-HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--
Q 018167 87 RVFNT-PL-CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG-- 159 (360)
Q Consensus 87 r~i~~-GI-aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g-- 159 (360)
+|+.. |. +=-..++.|.|.++.. -++++++ ..+ |++.. ..+-. +...+ +|+ .+|+...+++..
T Consensus 429 ~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i-~GDGsf~~~~-~el~t-a~~~~------l~~-~~vv~NN~~~g~~~ 498 (578)
T PRK06112 429 RFLTPRGLAGLGWGVPMAIGAKVARPGAPVICL-VGDGGFAHVW-AELET-ARRMG------VPV-TIVVLNNGILGFQK 498 (578)
T ss_pred eEECCCCccccccHHHHHHHHHhhCCCCcEEEE-EcchHHHhHH-HHHHH-HHHhC------CCe-EEEEEeCCccCCEE
Confidence 57653 21 1135667888888763 4566664 444 44333 33332 45444 466 555555443110
Q ss_pred --C---CCCCC-----CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --H---GGHYH-----SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --~---~g~~H-----s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
. .+..+ ..-|+ .+.+++ |..-+.-.++.|++.+++.+++.++|++|
T Consensus 499 ~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 555 (578)
T PRK06112 499 HAETVKFGTHTDACHFAAVDHAAIARAC-GCDGVRVEDPAELAQALAAAMAAPGPTLI 555 (578)
T ss_pred eccccccCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 01111 11233 334444 56666778999999999999999999998
No 198
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=63.59 E-value=18 Score=28.39 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=45.7
Q ss_pred eCCcEEEEEec----hhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHh-cCCeEEEEeCCCcCCchHHHHH
Q 018167 237 EGSDITLVGWG----AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVTGGFGAEIS 310 (360)
Q Consensus 237 ~G~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~-~~~~ivvvEe~~~~GGlgs~v~ 310 (360)
..++|+|++.| +.-..|.+|.+.|++.|++.+.+|+.. .|-..+.+.+.-. .+-..|++.. ...||......
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~-~~~~~~~l~~~tg~~tvP~vfi~g-~~iGG~ddl~~ 86 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE-DPEIRQGIKEYSNWPTIPQLYVKG-EFVGGCDIIME 86 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC-CHHHHHHHHHHhCCCCCCEEEECC-EEEeChHHHHH
Confidence 35789999888 456778889999999999999999853 1211122222111 1334466654 45798876544
No 199
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=63.26 E-value=25 Score=41.83 Aligned_cols=114 Identities=12% Similarity=0.052 Sum_probs=67.9
Q ss_pred CcEEechhHHHHHHHHHHHHhcCCCeeEEEe-cCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC--CCC
Q 018167 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (360)
Q Consensus 86 ~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~-~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g--~~g 162 (360)
=|++.+ ..|++++-+|-|+|+..-+|-+++ |..+-...++--+.+ +... .+ |+++........ .-|
T Consensus 340 i~~i~~-rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l~av~e-A~~d--------~v-PlLvItgd~p~~~~~~g 408 (1655)
T PLN02980 340 TTCIAC-FDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPAVVE-ASQD--------FV-PLLLLTADRPPELQDAG 408 (1655)
T ss_pred CeEEec-cCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHH-Hhhc--------CC-CEEEEeCCCCHHHhcCC
Confidence 366655 799999999999999865665553 555544444444442 2221 23 555443222211 233
Q ss_pred CCCCchHHHHHcCCCCcEEE--eeCCH-------HHHHHHHHHhHhC-CCCEEEeccc
Q 018167 163 HYHSQSPEAFFCHVPGLKVV--IPRSP-------RQAKGLLLSCIRD-PNPVVFFEPK 210 (360)
Q Consensus 163 ~~Hs~~d~a~~r~iPn~~V~--~P~d~-------~e~~~~l~~a~~~-~~P~~i~~~k 210 (360)
..+.+...++++.+--...- .|.+. ..+..+++.|... +|||+|-.|.
T Consensus 409 a~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 409 ANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred CCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 45557777888877654333 44441 3455566666554 6999998775
No 200
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=63.12 E-value=26 Score=36.80 Aligned_cols=111 Identities=13% Similarity=0.043 Sum_probs=61.8
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+- +=-..++.|.|.+++. -++++.+ -.+ |++.+ ..|- -+...+ +|+ .+|+...+++.-
T Consensus 408 p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i-~GDG~f~m~~-~EL~-Ta~r~~------lpv-v~iV~NN~~yg~ 477 (588)
T TIGR01504 408 PRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAL-SGDYDFQFMI-EELA-VGAQHN------IPY-IHVLVNNAYLGL 477 (588)
T ss_pred CCcEEeCCccccccchHhHHHhhhhhCCCCcEEEE-EcchHhhccH-HHHH-HHHHhC------CCe-EEEEEeCCchHH
Confidence 788887641 1112444555555553 4667765 444 54433 2233 244444 466 555555554320
Q ss_pred --------CCC----CCCC----------chHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEE
Q 018167 160 --------HGG----HYHS----------QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (360)
Q Consensus 160 --------~~g----~~Hs----------~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i 206 (360)
.+. .... .-|. ++.+++ |..-..-.+++|++.+++.+++ .++|++|
T Consensus 478 i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lI 550 (588)
T TIGR01504 478 IRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGL-GCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVV 550 (588)
T ss_pred HHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhhcccCCCcEEE
Confidence 000 0000 1233 344555 6777777999999999999995 6899998
No 201
>PRK07524 hypothetical protein; Provisional
Probab=63.07 E-value=87 Score=32.33 Aligned_cols=111 Identities=16% Similarity=0.089 Sum_probs=62.2
Q ss_pred CCcEEe-ch-h-HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC
Q 018167 85 KSRVFN-TP-L-CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158 (360)
Q Consensus 85 p~r~i~-~G-I-aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~ 158 (360)
|.+|++ .+ . +=-..++.|.|.+++. -++++++ ..+ |++..-| +- .+...+ +|+ .+|+...+++.
T Consensus 396 p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i-~GDG~f~~~~~e-l~-ta~~~~------lpi-~~vV~NN~~~g 465 (535)
T PRK07524 396 PRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCL-VGDGGLQFTLPE-LA-SAVEAD------LPL-IVLLWNNDGYG 465 (535)
T ss_pred CCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchHHhhhHHH-HH-HHHHhC------CCe-EEEEEECCchH
Confidence 788887 21 1 1112456777777762 4555554 343 5544433 43 344444 466 55555544432
Q ss_pred C-------CCCC-----CCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 159 G-------HGGH-----YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 159 g-------~~g~-----~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
. .++. .|...-.++.+++ |+.-..-.++.|+..+++++++.++|++|
T Consensus 466 ~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 524 (535)
T PRK07524 466 EIRRYMVARDIEPVGVDPYTPDFIALARAF-GCAAERVADLEQLQAALRAAFARPGPTLI 524 (535)
T ss_pred HHHHHHHHhcCCccccCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 0111 1122223344444 55566668999999999999999999998
No 202
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=62.18 E-value=90 Score=32.24 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=62.9
Q ss_pred CCcEEechh-HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC-
Q 018167 85 KSRVFNTPL-CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG- 159 (360)
Q Consensus 85 p~r~i~~GI-aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g- 159 (360)
|.+|+..+. +=-..++.|.|.++.. -++++++ ..+ |++. ...+. .++..+ +|+ .+|+...+++..
T Consensus 398 ~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i-~GDG~f~~~-~~eL~-ta~~~~------lp~-~~vv~NN~~~~~~ 467 (530)
T PRK07092 398 QGSFYTMASGGLGYGLPAAVGVALAQPGRRVIGL-IGDGSAMYS-IQALW-SAAQLK------LPV-TFVILNNGRYGAL 467 (530)
T ss_pred CCceEccCCCcccchHHHHHHHHHhCCCCeEEEE-EeCchHhhh-HHHHH-HHHHhC------CCc-EEEEEeChHHHHH
Confidence 678886311 1113456778877763 3455554 444 5543 23333 244444 466 566555554321
Q ss_pred --------CCCCCC---CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HGGHYH---SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~g~~H---s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.+.... .-.|+ .+.++. |+..+.-.+..|+..+++.+.+.++|++|
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~al~~a~~~~~p~li 525 (530)
T PRK07092 468 RWFAPVFGVRDVPGLDLPGLDFVALARGY-GCEAVRVSDAAELADALARALAADGPVLV 525 (530)
T ss_pred HHHHHhhCCCCCCCCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 111100 11233 334444 77778888999999999999988999988
No 203
>PRK05858 hypothetical protein; Provisional
Probab=61.88 E-value=58 Score=33.75 Aligned_cols=111 Identities=10% Similarity=0.031 Sum_probs=61.8
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcC-CCeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~-G~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|++.+. +=-..++.|.|.++. .-||++++ -.+ |++.. ..+-. +...+ +|+ .+|+...+++.-
T Consensus 397 p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i-~GDG~f~~~~-~eL~T-a~~~~------lpi-~ivV~NN~~y~~ 466 (542)
T PRK05858 397 PGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLL-QGDGAFGFSL-MDVDT-LVRHN------LPV-VSVIGNNGIWGL 466 (542)
T ss_pred CCCEEeCCCccccccchhHHHHHHHhCCCCcEEEE-EcCchhcCcH-HHHHH-HHHcC------CCE-EEEEEeCCchhh
Confidence 788987753 212234455555554 34666665 444 43333 22332 33334 466 555555444321
Q ss_pred C-------CCC-----C-CCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 H-------GGH-----Y-HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 ~-------~g~-----~-Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
. .+. . +..+-..+.+++ |..-....+++|+..+++.+++.++|++|
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 525 (542)
T PRK05858 467 EKHPMEALYGYDVAADLRPGTRYDEVVRAL-GGHGELVTVPAELGPALERAFASGVPYLV 525 (542)
T ss_pred HHHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCcEEE
Confidence 0 010 0 111112333343 67888999999999999999999999999
No 204
>PRK10026 arsenate reductase; Provisional
Probab=61.33 E-value=19 Score=30.68 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCC
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~ 291 (360)
-..+.+|.+.|++.|++++++|+.. .|++.+.|.+.+++.+
T Consensus 12 Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 12 CGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADMG 52 (141)
T ss_pred CHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhCC
Confidence 5678889999999999999999988 8999998888777654
No 205
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=61.11 E-value=54 Score=34.33 Aligned_cols=111 Identities=13% Similarity=0.015 Sum_probs=61.9
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+- +=-..++.|.|.+++. -++++++ ..+ |.+...| |-+ +...+ +|+ .+|+...+++..
T Consensus 412 p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i-~GDG~f~~~~~e-l~T-a~~~~------lpi-~~vV~NN~~~~~ 481 (570)
T PRK06725 412 PRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICI-AGDASFQMNIQE-LQT-IAENN------IPV-KVFIINNKFLGM 481 (570)
T ss_pred CCeEEccCCcccccchhhHHHhhHhhcCCCeEEEE-EecchhhccHHH-HHH-HHHhC------CCe-EEEEEECCccHH
Confidence 678886531 1123556677777663 3566664 444 5444433 433 44444 466 556555544321
Q ss_pred --------CCC----CCCCchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HGG----HYHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~g----~~Hs~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.++ .....-|+ .+.+++ |..-..-.|+.|+..+++.+.+.++|++|
T Consensus 482 ~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~li 540 (570)
T PRK06725 482 VRQWQEMFYENRLSESKIGSPDFVKVAEAY-GVKGLRATNSTEAKQVMLEAFAHEGPVVV 540 (570)
T ss_pred HHHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 011 11111233 333443 45555558999999999999999999988
No 206
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=60.64 E-value=18 Score=35.99 Aligned_cols=70 Identities=19% Similarity=0.381 Sum_probs=50.0
Q ss_pred cEEEE---EechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHH
Q 018167 240 DITLV---GWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (360)
Q Consensus 240 dv~Ii---a~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l 313 (360)
.|+|+ .||++-..|..+++.|.+.|++|.++++.+- |.+.|.+.+.+++.+++ =.....++.--.+...|
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~vv-GsPT~~~~~~p~i~~~l 320 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLVV-GSPTINGGAHPPIQTAL 320 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHHHHHHHHhhcceEEE-ecCcccCCCCchHHHHH
Confidence 46665 5788888999999999999999999999986 77777777777776654 23333344433343333
No 207
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=60.60 E-value=1.5e+02 Score=30.98 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=62.6
Q ss_pred CCcEEechh-H-HHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI-a-E~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+- . =-..++.|.|.++.- -++++++ -.+ |++.+-| |- -+...+ +|+ .+|+...+++.-
T Consensus 420 ~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i-~GDG~f~m~~~e-L~-Ta~~~~------l~~-~~vV~NN~~y~~ 489 (585)
T CHL00099 420 PRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICI-SGDASFQMNLQE-LG-TIAQYN------LPI-KIIIINNKWQGM 489 (585)
T ss_pred CCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEE-EcchhhhhhHHH-HH-HHHHhC------CCe-EEEEEECCcchH
Confidence 788886421 1 112455667766652 3566665 444 5544322 32 234444 466 555555443210
Q ss_pred --------CCCC-C------CCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HGGH-Y------HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~g~-~------Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.++. . |...-..+.+++ |+.-..-.+++|+..+++.+++.++|.+|
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 550 (585)
T CHL00099 490 VRQWQQAFYGERYSHSNMEEGAPDFVKLAEAY-GIKGLRIKSRKDLKSSLKEALDYDGPVLI 550 (585)
T ss_pred HHHHHHHhcCCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0111 1 112223344555 67777889999999999999999999998
No 208
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=60.59 E-value=18 Score=30.01 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcC
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~ 290 (360)
-..+.+|.+.|++.|++++++|... .|++.+.|.+.+++.
T Consensus 11 Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~~ 50 (126)
T TIGR01616 11 CANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGNK 50 (126)
T ss_pred CHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHHc
Confidence 4678889999999999999999987 889998887776653
No 209
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=60.41 E-value=45 Score=34.46 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=84.7
Q ss_pred CCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHhc
Q 018167 58 PRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKF 136 (360)
Q Consensus 58 ~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~~ 136 (360)
++++.+-.|-.. ..++.+. .++-=|++.+- .|-|+.=.|=|.|+. |.-.++. ||+.=-..|++-|-- +|.
T Consensus 20 ~~iFGVPGDyNL----~lLD~i~-~~~~lrWvGn~-NELNaaYAADGYaR~~Gi~alvT-TfGVGELSA~NGIAG--SYA 90 (557)
T COG3961 20 KSIFGVPGDYNL----SLLDKIY-SVPGLRWVGNA-NELNAAYAADGYARLNGISALVT-TFGVGELSALNGIAG--SYA 90 (557)
T ss_pred ceeeeCCCcccH----HHHHHhh-cCCCceeeccc-chhhhhhhhcchhhhcCceEEEE-ecccchhhhhcccch--hhh
Confidence 567877777431 1233333 33235777664 799999999999996 7777776 688654677776642 332
Q ss_pred ccccCCCccccceEEEc-CCCCCCCCC--CCCC--chHHHHHcCC-CCc----EEEeeC--CHHHHHHHHHHhHhCCCCE
Q 018167 137 RYRSGNQFNCGGLTVRA-PYGAVGHGG--HYHS--QSPEAFFCHV-PGL----KVVIPR--SPRQAKGLLLSCIRDPNPV 204 (360)
Q Consensus 137 ~~~~~~~~~v~~~v~~~-~~g~~g~~g--~~Hs--~~d~a~~r~i-Pn~----~V~~P~--d~~e~~~~l~~a~~~~~P~ 204 (360)
.. .|| .. +++ |.-.+..-+ -||. -.|...+..| -++ ..+.|. -+.|...+++.++..+.|+
T Consensus 91 E~-----vpV-vh-IvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~RPv 163 (557)
T COG3961 91 EH-----VPV-VH-IVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQRRPV 163 (557)
T ss_pred hc-----CCE-EE-EEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhcCCe
Confidence 21 344 22 233 222222212 3774 3444443222 111 123343 3789999999999999999
Q ss_pred EEeccccccccCc
Q 018167 205 VFFEPKWLYRLSV 217 (360)
Q Consensus 205 ~i~~~k~l~r~~~ 217 (360)
||..|-...+.+.
T Consensus 164 YI~lP~dva~~~~ 176 (557)
T COG3961 164 YIGLPADVADLPI 176 (557)
T ss_pred EEEcchHHhcCcC
Confidence 9988876665543
No 210
>PLN02470 acetolactate synthase
Probab=60.23 E-value=99 Score=32.43 Aligned_cols=111 Identities=13% Similarity=0.072 Sum_probs=62.5
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+- +=-..++.|.|.+++. -++++++ -.+ |.+..-| |- .+...+ +|+ .+|+...+++..
T Consensus 416 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~e-L~-Ta~~~~------l~v-~ivV~NN~~yg~ 485 (585)
T PLN02470 416 PRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDI-DGDGSFIMNIQE-LA-TIHVEN------LPV-KIMVLNNQHLGM 485 (585)
T ss_pred CCeEEcCCccccccchHHHHHHHHHhCCCCcEEEE-EccchhhccHHH-HH-HHHHhC------CCe-EEEEEeCCcchH
Confidence 788886420 1123566677777763 3566665 344 4433322 22 234333 456 555555544310
Q ss_pred --------CCCC-CCC-----------chHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HGGH-YHS-----------QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~g~-~Hs-----------~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.++. .|. .-|. ++.+++ |..-..-.++.|+..+++++++.++|++|
T Consensus 486 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 552 (585)
T PLN02470 486 VVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGC-KIPAARVTRKSDLREAIQKMLDTPGPYLL 552 (585)
T ss_pred HHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 0111 000 0243 334444 67777889999999999999999999988
No 211
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=60.10 E-value=24 Score=30.60 Aligned_cols=56 Identities=20% Similarity=0.137 Sum_probs=36.3
Q ss_pred CcEEEEEechhHH----HHHHHHHHHHhcCC---CeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 239 SDITLVGWGAQLS----IMEQACLDAEKEGI---SCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 239 ~dv~Iia~G~~~~----~al~Aa~~L~~~Gi---~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
..++|+++|+.+. .-..++++|++... +++|+|.-+.-|. +...+..+.++++|+-
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~~----l~~~l~~~d~vIIVDa 64 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGPN----LLGLLAGYDPVIIVDA 64 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcHH----HHHHhcCCCcEEEEEe
Confidence 4678899998652 24456677766544 6789999996543 3344555666766653
No 212
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=59.92 E-value=26 Score=30.62 Aligned_cols=52 Identities=10% Similarity=0.189 Sum_probs=36.6
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEE
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLIS 296 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvv 296 (360)
+|++++||+.|.++... +++.|.++|.++.+++-++ +.+.+.+++..-||+.
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~~------~~l~~~l~~aDiVIsa 94 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSKT------KNLKEHTKQADIVIVA 94 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECCc------hhHHHHHhhCCEEEEc
Confidence 46889999999876653 3566777898888887542 4566677777755544
No 213
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=59.66 E-value=21 Score=28.95 Aligned_cols=41 Identities=27% Similarity=0.230 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCC
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~ 291 (360)
...+.+|.+.|++.|++++.+|+.. .|++.+.|.+.++..+
T Consensus 9 C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 9 CSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKLG 49 (114)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHcC
Confidence 4678888899999999999999987 8999998888777653
No 214
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=59.61 E-value=21 Score=28.81 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCC
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~ 291 (360)
...+.+|.+.|++.|++++.+|+.. .|++.+.|.+.++.++
T Consensus 9 C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~~ 49 (112)
T cd03034 9 CSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKLG 49 (112)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHcC
Confidence 4677888889999999999999887 8889888877776654
No 215
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=59.37 E-value=33 Score=28.93 Aligned_cols=54 Identities=30% Similarity=0.308 Sum_probs=36.1
Q ss_pred EEEEEechhH----HHHHHHHHHHHhc-C--CCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 241 ITLVGWGAQL----SIMEQACLDAEKE-G--ISCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 241 v~Iia~G~~~----~~al~Aa~~L~~~-G--i~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
++|+++|+.. .....+++.|++. + -+++++|..+.- ..+.+.+.++.++|+|+-
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~----~~l~~~l~~~d~viiVDA 61 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG----LELLPYIEEADRLIIVDA 61 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH----HHHHHHHhcCCEEEEEEc
Confidence 3678888876 3366777788765 3 358889888843 223355567788888876
No 216
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=59.09 E-value=63 Score=34.09 Aligned_cols=111 Identities=10% Similarity=-0.033 Sum_probs=65.3
Q ss_pred CCcEEechh-HHH-HHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL-CEQ-GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI-aE~-~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|++.|- .-. ..++.|.|.++.. -++++++ -.+ |++.. ..|- .+...+ +|+ .+|+...+++.-
T Consensus 437 p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i-~GDG~f~m~~-~eL~-Ta~~~~------lpv-~ivV~NN~~~g~ 506 (612)
T PRK07789 437 PRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAI-DGDGCFQMTN-QELA-TCAIEG------IPI-KVALINNGNLGM 506 (612)
T ss_pred CCeEEcCCCcccccchhhhHHhhhccCCCCcEEEE-EcchhhhccH-HHHH-HHHHcC------CCe-EEEEEECCchHH
Confidence 789997642 322 2567777877773 5677775 444 44333 2222 234344 456 566555554320
Q ss_pred --------CCCC--------CC-CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCCEEE
Q 018167 160 --------HGGH--------YH-SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (360)
Q Consensus 160 --------~~g~--------~H-s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-~~P~~i 206 (360)
.++. .| ..-|. ++-+++ |+.-+.-.+++|+..+++.+++. ++|++|
T Consensus 507 i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~p~lI 571 (612)
T PRK07789 507 VRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAY-GCVGLRCEREEDVDAVIEKARAINDRPVVI 571 (612)
T ss_pred HHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 1111 01 11244 344444 67777889999999999999985 899999
No 217
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=58.90 E-value=20 Score=26.03 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHh-cCCeEEEEeCCCcCCchH
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVTGGFG 306 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~-~~~~ivvvEe~~~~GGlg 306 (360)
-..|.+|.+.|++.|++.+.+|+.. .|-..+.+.+. . .+-.+++++.....+|+-
T Consensus 9 Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~~-g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 9 CVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKAQ-GFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHc-CCcccCEEEECCCcEEeccC
Confidence 3577888888999999999999975 33222323221 1 123456665433456654
No 218
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=58.47 E-value=50 Score=34.42 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCCeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCC-C--------
Q 018167 98 IVGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-S-------- 166 (360)
Q Consensus 98 ~vg~AaGlA~~G~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~H-s-------- 166 (360)
.++.|.|.++..-+|++++ -.+ |++-.-| +-. +...+ +|+ .+|+...+++.-..-..| +
T Consensus 430 ~lpaaiGaala~~~~vv~i-~GDGsf~~~~~e-L~T-a~r~~------l~i-~ivVlNN~g~~~~~~~~~~~~~~~~~~~ 499 (568)
T PRK07449 430 LLSTAAGVARASAKPTVAL-IGDLSFLHDLNG-LLL-LKQVP------APL-TIVVVNNNGGGIFSLLPQPEEEPVFERF 499 (568)
T ss_pred HHHHHHHHHhcCCCCEEEE-echHHhhcCcHH-HHh-hcccC------CCe-EEEEEECCCCccccCCCCCCCcchhhHh
Confidence 4678888887745666665 444 4432222 222 33333 466 566665554321110000 0
Q ss_pred -----chHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 167 -----QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 167 -----~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.-|. ++-.++ |..-+...+++|+..+++++++.++|++|
T Consensus 500 ~~~~~~~df~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lI 544 (568)
T PRK07449 500 FGTPHGVDFAHAAAMY-GLEYHRPETWAELEEALADALPTPGLTVI 544 (568)
T ss_pred hcCCCCCCHHHHHHHc-CCCccCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 0111 122222 55566779999999999999988999998
No 219
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=58.17 E-value=74 Score=28.24 Aligned_cols=68 Identities=10% Similarity=0.211 Sum_probs=45.0
Q ss_pred echhHHHHHHHHHHHHh-cCCCeeEEEeccccCCcH--------------HHHHHHHhcCCeEEEEeCCCcCCchHHHHH
Q 018167 246 WGAQLSIMEQACLDAEK-EGISCELIDLKTLIPWDK--------------ETVEASVRKTGRLLISHEAPVTGGFGAEIS 310 (360)
Q Consensus 246 ~G~~~~~al~Aa~~L~~-~Gi~v~Vi~~~~ikP~d~--------------~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~ 310 (360)
+|++-..|..+++.+++ .|+++++++++...|-+. .. .+.+..++.|++. -....|++...+.
T Consensus 12 ~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~g-sPty~g~~~~~lk 89 (200)
T PRK03767 12 YGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVAT-PDELADYDAIIFG-TPTRFGNMAGQMR 89 (200)
T ss_pred CCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccC-HHHHHhCCEEEEE-ecccCCCchHHHH
Confidence 45666778888888887 899999999975443211 11 3445566766554 3345788888877
Q ss_pred HHHHH
Q 018167 311 ASILE 315 (360)
Q Consensus 311 ~~l~~ 315 (360)
.++..
T Consensus 90 ~fld~ 94 (200)
T PRK03767 90 NFLDQ 94 (200)
T ss_pred HHHHH
Confidence 77755
No 220
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=58.13 E-value=34 Score=26.03 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=37.8
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHH-hcCCeEEEEeC
Q 018167 240 DITLVGWGA----QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASV-RKTGRLLISHE 298 (360)
Q Consensus 240 dv~Iia~G~----~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~-~~~~~ivvvEe 298 (360)
++.|+..|. ....|.+.++.|++.|+.+.+-+ .=..+.. .+..+- .+..-++++-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k-~~~~a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGK-QIKYADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHH-HHHHHHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhH-HHHHHhhcCCeEEEEECc
Confidence 477888888 45778999999999999887776 3344443 344443 34566666643
No 221
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=57.27 E-value=45 Score=25.20 Aligned_cols=57 Identities=11% Similarity=0.135 Sum_probs=36.5
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHH-HhcCCeEEEEeCC
Q 018167 240 DITLVGWGA----QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEAS-VRKTGRLLISHEA 299 (360)
Q Consensus 240 dv~Iia~G~----~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~-~~~~~~ivvvEe~ 299 (360)
.++|+..+. ....|++.++.|++.|+++.+ |.+. +.+... +..+ ..+...++++-+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~-i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVK-FADADLIGIPYRIVVGKK 64 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccc-hhHHHhcCCCEEEEECCc
Confidence 466777664 567899999999999999976 4443 344433 3333 2345667777543
No 222
>PRK11269 glyoxylate carboligase; Provisional
Probab=56.46 E-value=95 Score=32.60 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=62.7
Q ss_pred CCcEEechh-H-HHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC-
Q 018167 85 KSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (360)
Q Consensus 85 p~r~i~~GI-a-E~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~- 158 (360)
|.+|++.|- . =-..++.|.|.++.. -++++++ -.+ |++..-| |-. +...+ +|+ .+|+...+++.
T Consensus 409 p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i-~GDG~f~m~~~e-L~T-a~~~~------lpv-~~vV~NN~~~g~ 478 (591)
T PRK11269 409 PRHWINCGQAGPLGWTIPAALGVRAADPDRNVVAL-SGDYDFQFLIEE-LAV-GAQFN------LPY-IHVLVNNAYLGL 478 (591)
T ss_pred CCcEEeCCccccccchhhhHHhhhhhCCCCcEEEE-EccchhhcCHHH-HHH-HHHhC------CCe-EEEEEeCCchhH
Confidence 788998752 1 112555677777663 4667765 444 5443322 322 33333 466 55555544321
Q ss_pred ------CC-CCCC-C-C------------chHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEE
Q 018167 159 ------GH-GGHY-H-S------------QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (360)
Q Consensus 159 ------g~-~g~~-H-s------------~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i 206 (360)
+. +..+ . + .-|. .+-+++ |..-....+++|+..+++++++ .++|++|
T Consensus 479 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~li 551 (591)
T PRK11269 479 IRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPALEQAKALMAEFRVPVVV 551 (591)
T ss_pred HHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEE
Confidence 00 0100 0 0 0133 333444 6778888999999999999985 6899998
No 223
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=55.61 E-value=59 Score=24.06 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=43.6
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHh-cCCeEEEEeCCCcCCchHHHHHHHH
Q 018167 236 REGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVTGGFGAEISASI 313 (360)
Q Consensus 236 ~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~-~~~~ivvvEe~~~~GGlgs~v~~~l 313 (360)
++..+|+|.+ -+.-..|.+|.+.|++.|++.+.+|+..- -+.+.+.+... .+-.+|++ ++...||+ +.|.++|
T Consensus 5 ~~~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~~~--~~~~~~~~~~g~~~vP~i~i-~g~~igG~-~~l~~~l 78 (79)
T TIGR02190 5 RKPESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLGND--ARGRSLRAVTGATTVPQVFI-GGKLIGGS-DELEAYL 78 (79)
T ss_pred CCCCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECCCC--hHHHHHHHHHCCCCcCeEEE-CCEEEcCH-HHHHHHh
Confidence 3445677665 45567888899999999999999997641 12222322211 12234555 45567887 4444443
No 224
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=55.49 E-value=36 Score=28.75 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=34.6
Q ss_pred EEEEEechhH----HHHHHHHHHHHhcCC--CeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 241 ITLVGWGAQL----SIMEQACLDAEKEGI--SCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 241 v~Iia~G~~~----~~al~Aa~~L~~~Gi--~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
++|+++|+.. .....++++|++... +++++|..+.-| + +...+.+++++|+|+-
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~~---~-l~~~l~~~d~vIiVDA 60 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAGM---E-VMFRARGAKQLIIIDA 60 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCHH---H-HHHHhcCCCEEEEEEe
Confidence 4678888765 246677777766543 478888888532 2 3344556777777765
No 225
>PRK07586 hypothetical protein; Validated
Probab=55.49 E-value=1.9e+02 Score=29.62 Aligned_cols=111 Identities=12% Similarity=0.110 Sum_probs=60.6
Q ss_pred CCcEEechh-HHHHHHHHHHHHhcC-CCeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC-
Q 018167 85 KSRVFNTPL-CEQGIVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG- 159 (360)
Q Consensus 85 p~r~i~~GI-aE~~~vg~AaGlA~~-G~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g- 159 (360)
|.+|+..+- +=-..+..|.|.+++ .-+|++++ -.+ |.+- ...+-. +...+ +|+ .+|+...+++..
T Consensus 376 ~~~~~~~~~g~mG~~lpaaiGa~lA~p~r~Vv~i-~GDGsf~m~-~~EL~T-a~~~~------lpv-~ivV~NN~~y~~~ 445 (514)
T PRK07586 376 PHDWLTLTGGAIGQGLPLATGAAVACPDRKVLAL-QGDGSAMYT-IQALWT-QAREN------LDV-TTVIFANRAYAIL 445 (514)
T ss_pred CCCEEccCCcccccHHHHHHHHHHhCCCCeEEEE-EechHHHhH-HHHHHH-HHHcC------CCC-EEEEEeCchhHHH
Confidence 788886531 111233455566665 34566665 444 4333 233332 34444 466 566555554320
Q ss_pred --------CCCC----------CCCchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HGGH----------YHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~g~----------~Hs~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.+.. .+..-|. ++.+++ |..-..-.++.|+..+++++++.++|.+|
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~el~~al~~a~~~~~p~li 510 (514)
T PRK07586 446 RGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGM-GVPARRVTTAEEFADALAAALAEPGPHLI 510 (514)
T ss_pred HHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 1000 0111233 333333 55666778999999999999998999988
No 226
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=55.15 E-value=1.1e+02 Score=31.83 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=63.0
Q ss_pred CCcEEechh-H-HHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI-a-E~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+- . =-..++.|.|.++.. -+|++++ -.+ |.+.. ..+-. +...+ +|+ .+|+...+++.-
T Consensus 398 ~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i-~GDGsf~m~~-~eL~T-a~~~~------lpv-~ivV~NN~~~g~ 467 (574)
T PRK09124 398 KRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVAL-SGDGGFSMLM-GDFLS-LVQLK------LPV-KIVVFNNSVLGF 467 (574)
T ss_pred CCeEEecCCcccccchHHHHHHHHHhCCCCeEEEE-ecCcHHhccH-HHHHH-HHHhC------CCe-EEEEEeCCcccc
Confidence 678886421 1 113567777877663 4666665 444 44333 22332 34334 466 555555543311
Q ss_pred ------CCC-----CCCCchHHH-HHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 ------HGG-----HYHSQSPEA-FFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 ------~~g-----~~Hs~~d~a-~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
..+ +.-..-|.+ +.+++ |+.-+...++.|+..+++++++.++|++|
T Consensus 468 i~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 525 (574)
T PRK09124 468 VAMEMKAGGYLTDGTDLHNPDFAAIAEAC-GITGIRVEKASELDGALQRAFAHDGPALV 525 (574)
T ss_pred HHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 011 100111332 33333 67778889999999999999999999999
No 227
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=54.74 E-value=49 Score=24.82 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=36.4
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHh-cCCeEEEEeCC
Q 018167 240 DITLVGWGA----QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEA 299 (360)
Q Consensus 240 dv~Iia~G~----~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~-~~~~ivvvEe~ 299 (360)
++.|+..+. ....|++.+..|++.|+.+.+-+ .. +.+... +..+-+ +...++++.+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~-~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKK-FREADLRGVPFAVVVGED 64 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHH-HHHHHhCCCCEEEEECCC
Confidence 567777664 56788999999999999887643 22 444433 333322 34567777653
No 228
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=53.59 E-value=28 Score=29.07 Aligned_cols=42 Identities=21% Similarity=0.133 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCC
Q 018167 249 QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (360)
Q Consensus 249 ~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~ 291 (360)
.-..|.+|.+.|++.|++.+++|+.. .|++.+.|.+.++.++
T Consensus 9 ~C~~crkA~~~L~~~~i~~~~~d~~~-~~~s~~eL~~~l~~~~ 50 (132)
T PRK13344 9 SCTSCKKAKTWLNAHQLSYKEQNLGK-EPLTKEEILAILTKTE 50 (132)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECCC-CCCCHHHHHHHHHHhC
Confidence 35678888889999999999999887 8889988888777653
No 229
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=53.01 E-value=24 Score=29.18 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=31.0
Q ss_pred echhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEE
Q 018167 246 WGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLIS 296 (360)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvv 296 (360)
||++-..|.+.++.|++.|+++.++++....+ . .+.+.....++++
T Consensus 7 tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~~---~--~~~~~~~~~~i~~ 52 (143)
T PF00258_consen 7 TGNTEKMAEAIAEGLRERGVEVRVVDLDDFDD---S--PSDLSEYDLLIFG 52 (143)
T ss_dssp SSHHHHHHHHHHHHHHHTTSEEEEEEGGGSCH---H--HHHHCTTSEEEEE
T ss_pred chhHHHHHHHHHHHHHHcCCceeeechhhhhh---h--hhhhhhhceeeEe
Confidence 46666677777778888899999998887643 2 2344455555444
No 230
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=53.01 E-value=1.9e+02 Score=26.79 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=43.1
Q ss_pred EEEEechh-HHHHHHHHHHHH-hcCCCeeEEEeccccCCcHHHH----HHHHh-cCCeEEEEeCCCcCCchHHHHHHHH
Q 018167 242 TLVGWGAQ-LSIMEQACLDAE-KEGISCELIDLKTLIPWDKETV----EASVR-KTGRLLISHEAPVTGGFGAEISASI 313 (360)
Q Consensus 242 ~Iia~G~~-~~~al~Aa~~L~-~~Gi~v~Vi~~~~ikP~d~~~l----~~~~~-~~~~ivvvEe~~~~GGlgs~v~~~l 313 (360)
+|+++|.. ..+..+|.+.++ ..+.++.+.++.+-.|-+.+.+ ...++ +++..|-.-+|.. |+...+++..
T Consensus 116 vIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDHt~--g~~~~~~Ava 192 (241)
T PF03102_consen 116 VILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDHTD--GIEAPIAAVA 192 (241)
T ss_dssp EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-SS--SSHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCCCC--CcHHHHHHHH
Confidence 57888864 578888888884 4468999999999988776531 23333 5677778888975 5666665543
No 231
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=52.92 E-value=1.2e+02 Score=24.29 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=60.1
Q ss_pred EEEEEechhHHHHHHHHHHHHhc-CCCeeEEEeccccCCcH--HHHHHHHh---cCCeEEEEeCCCcCCchHHHHHHHHH
Q 018167 241 ITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDK--ETVEASVR---KTGRLLISHEAPVTGGFGAEISASIL 314 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~ikP~d~--~~l~~~~~---~~~~ivvvEe~~~~GGlgs~v~~~l~ 314 (360)
++|++.|......+++++.+-.+ --++..+++..=..++. +.+.+.++ +...++++-|= .||--...+....
T Consensus 2 iii~sHG~~A~g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl--~ggsp~n~a~~~~ 79 (116)
T PF03610_consen 2 IIIASHGSLAEGLLESAEMILGEDQDNIEAVDLYPDESIEDFEEKLEEAIEELDEGDGVLILTDL--GGGSPFNEAARLL 79 (116)
T ss_dssp EEEEEETTHHHHHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHHHHHHHHHCCTTSEEEEEESS--TTSHHHHHHHHHH
T ss_pred EEEEECcHHHHHHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHHHHHHHHhccCCCcEEEEeeC--CCCccchHHHHHh
Confidence 78999999899999999988654 33677777665444432 34555553 34677777652 3543333332222
Q ss_pred HhccccCCCceEEEecCCCCc--cccccccCCCCHHHHHHHH
Q 018167 315 ERCFLRLEAPVARVCGLDTPF--PLVFEPFYMPTKNKILDAI 354 (360)
Q Consensus 315 ~~~~~~l~~~~~~i~~~~~~~--~~~~e~~gl~~~~~I~~~i 354 (360)
.. ...+..+.|.+-|. ..+...... +.+++++.+
T Consensus 80 ~~-----~~~~~vi~G~Nlpmlle~~~~~~~~-~~~el~~~i 115 (116)
T PF03610_consen 80 LD-----KPNIRVISGVNLPMLLEALMARESM-SLEELIEEI 115 (116)
T ss_dssp CT-----STTEEEEES--HHHHHHHHHHHTCH-CHHHHHHHH
T ss_pred cc-----CCCEEEEecccHHHHHHHHHHHHhc-CHHHHHHhc
Confidence 21 22356677777543 112333455 677776654
No 232
>PLN02790 transketolase
Probab=52.67 E-value=1.5e+02 Score=31.71 Aligned_cols=77 Identities=5% Similarity=-0.032 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCC--CchHH-HHHcCCCCcEEEee----CCHHHHHHHHH
Q 018167 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVVIP----RSPRQAKGLLL 195 (360)
Q Consensus 123 ~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~H--s~~d~-a~~r~iPn~~V~~P----~d~~e~~~~l~ 195 (360)
-.++|-+.. ++..++ |. -+++.+..... -++++. ..+|+ ..++++ |+.++.+ .|..++..+++
T Consensus 152 G~~~EAl~~-A~~~~L------~n-li~i~d~N~~~-i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~ 221 (654)
T PLN02790 152 GISNEAASL-AGHWGL------GK-LIVLYDDNHIS-IDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIK 221 (654)
T ss_pred hHHHHHHHH-HHHhCC------CC-EEEEEecCCcc-ccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHH
Confidence 467887654 666553 32 24445544432 222322 24444 456777 9999998 56778888888
Q ss_pred HhHh-CCCCEEEecc
Q 018167 196 SCIR-DPNPVVFFEP 209 (360)
Q Consensus 196 ~a~~-~~~P~~i~~~ 209 (360)
.+.+ .++|++|...
T Consensus 222 ~a~~~~~~P~lI~~~ 236 (654)
T PLN02790 222 EAKAVTDKPTLIKVT 236 (654)
T ss_pred HHHhcCCCeEEEEEE
Confidence 8876 5899999543
No 233
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=52.60 E-value=23 Score=29.37 Aligned_cols=87 Identities=13% Similarity=0.145 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEe-----
Q 018167 255 QACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVC----- 329 (360)
Q Consensus 255 ~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~----- 329 (360)
.|++.|++.||+.. +..+ ++..+.+ .....||++++... ..+....-.. -..++..++
T Consensus 45 ~a~~~l~~~Gid~~--~~~~--~l~~~~~----~~~DlIv~m~~~~~-----~~~~~~~p~~----~~~kv~~~~~~~~~ 107 (140)
T smart00226 45 RAVEVLKEHGIALS--HHAS--QLTSSDF----KNADLVLAMDHSHL-----RNICRLKPRV----SRAKVELFGEYVTG 107 (140)
T ss_pred HHHHHHHHcCcCcc--ceec--cCCHHHH----HhCCEEEEeCHHHH-----HHHHHHcccc----ccceeEeHhhhCcC
Confidence 45566778899865 2222 6665543 45788999987532 2233222110 012344442
Q ss_pred ---cCCCCccccccccCCCCHHHHHHHHHHhhh
Q 018167 330 ---GLDTPFPLVFEPFYMPTKNKILDAIKSTVN 359 (360)
Q Consensus 330 ---~~~~~~~~~~e~~gl~~~~~I~~~i~~~l~ 359 (360)
-.++|+..-++.|.- ..+.|.++++++++
T Consensus 108 ~~~dI~DP~~~~~~~f~~-~~~~I~~~i~~ll~ 139 (140)
T smart00226 108 SHGDVDDPYYGGIDGFEQ-VYDELENALQEFLK 139 (140)
T ss_pred CCCcCCCCCCCChHHHHH-HHHHHHHHHHHHHh
Confidence 034565444555555 67788888887765
No 234
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=52.22 E-value=29 Score=27.84 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcC
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~ 290 (360)
-..|.+|.+.|++.|++.+.+|+.. .|.+.+.|.+.++++
T Consensus 9 C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~~~~~~ 48 (111)
T cd03036 9 CSTCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEKS 48 (111)
T ss_pred CHHHHHHHHHHHHcCCceEEecccC-CcccHHHHHHHHHHc
Confidence 4568888889999999999999887 688887777666554
No 235
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=51.91 E-value=1.3e+02 Score=24.52 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=26.3
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCCEEEe
Q 018167 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (360)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~~~~P~~i~ 207 (360)
.|+.|.+.+|+..++++|.+++.|+.++
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~~~~v~~~ 30 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANENGVPVRVR 30 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEE
Confidence 4899999999999999999999999995
No 236
>PRK05899 transketolase; Reviewed
Probab=51.48 E-value=1.8e+02 Score=30.89 Aligned_cols=40 Identities=10% Similarity=0.110 Sum_probs=31.4
Q ss_pred hHH-HHHcCCCCcEEEeeC--CHHHHHHHHHHhHhCCCCEEEec
Q 018167 168 SPE-AFFCHVPGLKVVIPR--SPRQAKGLLLSCIRDPNPVVFFE 208 (360)
Q Consensus 168 ~d~-a~~r~iPn~~V~~P~--d~~e~~~~l~~a~~~~~P~~i~~ 208 (360)
+|+ ..++++ |+.++.-. |..++..+++.+.+.++|++|..
T Consensus 203 ~~~~~~~~a~-G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v 245 (624)
T PRK05899 203 EDVKKRFEAY-GWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIA 245 (624)
T ss_pred ccHHHHhccC-CCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 444 455666 78887767 89999999999988889999953
No 237
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only]
Probab=51.45 E-value=1.6e+02 Score=26.00 Aligned_cols=106 Identities=23% Similarity=0.292 Sum_probs=54.6
Q ss_pred HHHHHHhHhCCCCEEEe--ccccccccCcccCCCCCcccCCCceE--E-----------eeeCCcEEEEEechhHHHHHH
Q 018167 191 KGLLLSCIRDPNPVVFF--EPKWLYRLSVEEVPEDDYMLPLSEAE--V-----------IREGSDITLVGWGAQLSIMEQ 255 (360)
Q Consensus 191 ~~~l~~a~~~~~P~~i~--~~k~l~r~~~~~v~~~~~~~~~Gk~~--v-----------l~~G~dv~Iia~G~~~~~al~ 255 (360)
..+++.+--.+-|+++- ||++|+.. .+++.-+.....++|.. . +..|++| +=+|..++.|.+
T Consensus 42 ~rLl~aaril~vP~ivTEqYP~gLG~T-V~eLd~~g~~~~~~KT~FSM~~p~v~~s~~~i~~~k~V--vL~GiEthvCv~ 118 (201)
T KOG4044|consen 42 TRLLAAARILQVPVIVTEQYPEGLGKT-VPELDIEGLKLNLSKTKFSMVLPPVEDSLKDIFGGKTV--VLFGIETHVCVL 118 (201)
T ss_pred HHHHHhhhhhCCcEEeecccccccccc-chhhchhhhcccccccceeeeCchHHHHHHhccCCCeE--EEEecchheehH
Confidence 34444444457899985 78888653 33332111111122211 1 2234544 445666666543
Q ss_pred -HHHHHHhcCCCeeEE-Eeccc-cCCcHHHHHHHHhcCCeEEEEeCC
Q 018167 256 -ACLDAEKEGISCELI-DLKTL-IPWDKETVEASVRKTGRLLISHEA 299 (360)
Q Consensus 256 -Aa~~L~~~Gi~v~Vi-~~~~i-kP~d~~~l~~~~~~~~~ivvvEe~ 299 (360)
.+-.|-++|++|-|+ |.-+- .--|...-.+-++..+.+++-.|+
T Consensus 119 qTa~dLl~rgl~VhvVaDacSSRs~~DR~~Al~r~rq~G~~lstsEs 165 (201)
T KOG4044|consen 119 QTALDLLERGLNVHVVADACSSRSNQDRDLALERMRQAGANLSTSES 165 (201)
T ss_pred HHHHHHHhCCceEEEEeehhccccchhHHHHHHHHHhcCCcccchHH
Confidence 222455789999877 43332 234444444556667776665554
No 238
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=50.23 E-value=39 Score=26.60 Aligned_cols=41 Identities=32% Similarity=0.318 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCC
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~ 291 (360)
-..|.+|.+.|++.|++.+.+|+.. .|.+.+.+.+.+.+.+
T Consensus 9 C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 9 CSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAKLG 49 (105)
T ss_pred CHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHhcC
Confidence 4678888899999999999999886 7888888877766544
No 239
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=50.17 E-value=32 Score=27.73 Aligned_cols=41 Identities=24% Similarity=0.131 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcC
Q 018167 249 QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (360)
Q Consensus 249 ~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~ 290 (360)
.-..|.+|.+.|++.|++.+.+|+.. .|++.+.|.+.++..
T Consensus 9 ~C~~c~ka~~~L~~~gi~~~~idi~~-~~~~~~el~~~~~~~ 49 (115)
T cd03032 9 SCSSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSLT 49 (115)
T ss_pred CCHHHHHHHHHHHHCCCceEEEecCC-CcchHHHHHHHHHHh
Confidence 35678888889999999999999865 788888887777654
No 240
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=49.82 E-value=88 Score=30.44 Aligned_cols=74 Identities=14% Similarity=0.225 Sum_probs=50.0
Q ss_pred EeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcC-CeE-EEEeCCCcCCchHHHHHH
Q 018167 234 VIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT-GRL-LISHEAPVTGGFGAEISA 311 (360)
Q Consensus 234 vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~-~~i-vvvEe~~~~GGlgs~v~~ 311 (360)
.+.+|+.++++++|.-..++.+ ..+.-|.+|.+|-...=.-.+.|.|.+.+..+ .++ ++....+.+| .-+.+.+
T Consensus 88 ~lePgd~vLv~~~G~wg~ra~D---~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTg-V~q~~~~ 163 (385)
T KOG2862|consen 88 LLEPGDNVLVVSTGTWGQRAAD---CARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTG-VLQDLLA 163 (385)
T ss_pred hcCCCCeEEEEEechHHHHHHH---HHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCcccc-ccchHHH
Confidence 4567899999999997776554 44455899999966666678888888877765 334 4445555554 4444333
No 241
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=49.65 E-value=50 Score=29.62 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=39.0
Q ss_pred CcEEEEEechhH----HHHHHHHHHHHhc---CCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 239 SDITLVGWGAQL----SIMEQACLDAEKE---GISCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 239 ~dv~Iia~G~~~----~~al~Aa~~L~~~---Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
++++|+++|+.. .....+++.|+++ .-+++++|.-+.-+ .+...+.+++++|+|+-
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g~----~ll~~i~~~d~vIiVDA 66 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGL----NLLGYVESASHLLILDA 66 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCHH----HHHHHHcCCCEEEEEEC
Confidence 468899999976 2466788888654 23588999888542 34455667777777764
No 242
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=49.54 E-value=1.5e+02 Score=30.88 Aligned_cols=34 Identities=6% Similarity=-0.009 Sum_probs=27.8
Q ss_pred HHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 172 FFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 172 ~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
+.+++ |+.-..-.+++|+...++.+++.++|++|
T Consensus 500 ~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li 533 (557)
T PRK08199 500 LARAY-GGHGETVERTEDFAPAFERALASGKPALI 533 (557)
T ss_pred HHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 33444 66677778999999999999998999998
No 243
>PRK07064 hypothetical protein; Provisional
Probab=49.46 E-value=1.1e+02 Score=31.69 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=60.8
Q ss_pred CCcEEechh-HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC-
Q 018167 85 KSRVFNTPL-CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG- 159 (360)
Q Consensus 85 p~r~i~~GI-aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g- 159 (360)
|.+++..+- +=-..++.|.|.+++. -++++.+ -.+ |.+.. ..|-. +...+ +|+ .+|+...+++.-
T Consensus 396 p~~~~~~~~g~mG~~lpaAiGa~lA~p~~~vv~i-~GDGsf~m~~-~eL~T-a~~~~------lpv-~ivV~NN~~yg~~ 465 (544)
T PRK07064 396 PRANVHALGGGIGQGLAMAIGAALAGPGRKTVGL-VGDGGLMLNL-GELAT-AVQEN------ANM-VIVLMNDGGYGVI 465 (544)
T ss_pred CCceeccCCCccccccchhhhhhhhCcCCcEEEE-EcchHhhhhH-HHHHH-HHHhC------CCe-EEEEEeCChhHHH
Confidence 666665421 1112345666666653 4566665 444 44333 22332 34434 466 555555444310
Q ss_pred -------CC----CC-CCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 -------HG----GH-YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 -------~~----g~-~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.+ +. .|...-..+.++. |..-....+++|+...++.+++.++|++|
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 523 (544)
T PRK07064 466 RNIQDAQYGGRRYYVELHTPDFALLAASL-GLPHWRVTSADDFEAVLREALAKEGPVLV 523 (544)
T ss_pred HHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 01 01 1122222333443 66777889999999999999999999998
No 244
>PRK06756 flavodoxin; Provisional
Probab=49.17 E-value=1.2e+02 Score=25.36 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=22.0
Q ss_pred echhHHHHHHHHHHHHhcCCCeeEEEeccc
Q 018167 246 WGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (360)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~i 275 (360)
||++-..|...++.|++.|+++.++|+...
T Consensus 12 tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~ 41 (148)
T PRK06756 12 SGNTEEMADHIAGVIRETENEIEVIDIMDS 41 (148)
T ss_pred CchHHHHHHHHHHHHhhcCCeEEEeehhcc
Confidence 455566677777778778999988887653
No 245
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=48.69 E-value=1e+02 Score=24.11 Aligned_cols=68 Identities=7% Similarity=0.118 Sum_probs=44.7
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHh-----cCCeEEEEeCCCcCCchHHHH
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-----KTGRLLISHEAPVTGGFGAEI 309 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~-----~~~~ivvvEe~~~~GGlgs~v 309 (360)
..+|+|.+. +.-..|.+|.+.|++.|++.+++|+.. .|-. ..+++.+. ++-..|++.. ...||+....
T Consensus 7 ~~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~~-~~~~~~l~~~tg~~tvP~Vfi~g-~~iGG~ddl~ 79 (99)
T TIGR02189 7 EKAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPAG-KDIENALSRLGCSPAVPAVFVGG-KLVGGLENVM 79 (99)
T ss_pred cCCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-CccH-HHHHHHHHHhcCCCCcCeEEECC-EEEcCHHHHH
Confidence 366888776 446778889999999999999999885 2222 22333333 2334566654 4579986643
No 246
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=48.51 E-value=70 Score=25.78 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=20.7
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEe
Q 018167 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (360)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (360)
++++|+.-|.. |.++.+.+++.|+++-+|+-
T Consensus 3 kkvLIanrGei---a~r~~ra~r~~Gi~tv~v~s 33 (110)
T PF00289_consen 3 KKVLIANRGEI---AVRIIRALRELGIETVAVNS 33 (110)
T ss_dssp SEEEESS-HHH---HHHHHHHHHHTTSEEEEEEE
T ss_pred CEEEEECCCHH---HHHHHHHHHHhCCcceeccC
Confidence 45777777776 55666666677988877754
No 247
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=48.50 E-value=1.5e+02 Score=24.06 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=61.5
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcH--HHHHHHHhc---CCeEEEEeCCCcCCchHHHHHHHHH
Q 018167 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDK--ETVEASVRK---TGRLLISHEAPVTGGFGAEISASIL 314 (360)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~--~~l~~~~~~---~~~ivvvEe~~~~GGlgs~v~~~l~ 314 (360)
+++|++.|.......++++.+-.+.-++..+++..=..++. +.+.+.+++ .+.++++=| ..||--..++..+.
T Consensus 2 ~ili~sHG~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~viil~D--l~GGSp~n~~~~~~ 79 (122)
T cd00006 2 GIIIATHGGFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTD--LFGGSPNNAAARLS 79 (122)
T ss_pred eEEEEcCHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCcEEEEEe--CCCCCHHHHHHHHH
Confidence 47899999888888899998854434677776654222211 234444444 345665544 23543333444333
Q ss_pred HhccccCCCceEEEecCCCCcc--cc-ccccCCCCHHHHHHHHHHh
Q 018167 315 ERCFLRLEAPVARVCGLDTPFP--LV-FEPFYMPTKNKILDAIKST 357 (360)
Q Consensus 315 ~~~~~~l~~~~~~i~~~~~~~~--~~-~e~~gl~~~~~I~~~i~~~ 357 (360)
.. ..++..+.+.+-|.- .+ ....+. +.+.+++.+.+.
T Consensus 80 ~~-----~~~~~visG~nlpmlle~~~~~~~~~-~~~e~~~~~~~~ 119 (122)
T cd00006 80 ME-----HPPVEVIAGVNLPMLLEAARARELGL-SLDELVENALEA 119 (122)
T ss_pred hc-----CCCEEEEEccCHHHHHHHHHccccCC-CHHHHHHHHHHh
Confidence 32 135666777776531 11 222346 777887776553
No 248
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=48.09 E-value=53 Score=27.49 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=33.7
Q ss_pred EEEechhH----HHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 243 LVGWGAQL----SIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 243 Iia~G~~~----~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
|+++|+.. .....+++.|++ -+++++|..+. -..+...+.+++++|+|+-
T Consensus 2 VlGiGN~l~~DDg~G~~v~~~L~~--~~v~vi~~g~~----~~~ll~~i~~~d~viiVDA 55 (140)
T cd06070 2 IIGVGNRLYGDDGFGSCLAEALEQ--CGAPVFDGGLD----GFGLLSHLENYDIVIFIDV 55 (140)
T ss_pred EEEECchhcccCcHHHHHHHHHhh--CCCEEEECCCc----HHHHHHHHcCCCEEEEEEe
Confidence 67778766 346677888876 36788888872 2233455567788888865
No 249
>PRK12559 transcriptional regulator Spx; Provisional
Probab=47.88 E-value=42 Score=27.96 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcC
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~ 290 (360)
-..|.+|.+.|++.|++.+.+|+.. .|++.+.|.+.++.+
T Consensus 10 C~~crkA~~~L~~~gi~~~~~di~~-~~~s~~el~~~l~~~ 49 (131)
T PRK12559 10 CASCRKAKAWLEENQIDYTEKNIVS-NSMTVDELKSILRLT 49 (131)
T ss_pred ChHHHHHHHHHHHcCCCeEEEEeeC-CcCCHHHHHHHHHHc
Confidence 4668888889999999999999987 888888887777663
No 250
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=47.83 E-value=60 Score=28.14 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=37.1
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHH--HHHHhcCC
Q 018167 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETV--EASVRKTG 291 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l--~~~~~~~~ 291 (360)
+++++.|+.-.-++-+++.|.+.|++|.|+-+.-..+++.+.- .+.+++.+
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g 81 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMG 81 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcC
Confidence 5677888899999999999999999999966655556666542 34455554
No 251
>COG1945 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) [Amino acid transport and metabolism]
Probab=47.77 E-value=24 Score=30.58 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=46.6
Q ss_pred HHHhcCC-CeeEEEeccccCCcHHH------HHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecC
Q 018167 259 DAEKEGI-SCELIDLKTLIPWDKET------VEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGL 331 (360)
Q Consensus 259 ~L~~~Gi-~v~Vi~~~~ikP~d~~~------l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~ 331 (360)
.|.+.|| ++.+|.+.||-|-..+. |.+ +..-.-+.+|.-+..+.+-|+.|+..+. ++.+
T Consensus 28 AL~dAgI~~~NLV~vSSIlPp~~~~V~~e~gl~k-l~pG~iv~~V~Ar~~S~~~G~~isaaig-------------~a~p 93 (163)
T COG1945 28 ALLDAGIENFNLVPVSSILPPNCEIVDPEDGLPK-LPPGAILFCVMARGTSNEPGRTISAAIG-------------VAIP 93 (163)
T ss_pred HHHhCCCcccceEEEecccCCcccccchhhcCCc-CCCCcEEeEEEeecccCCCCceeeeeee-------------EEec
Confidence 4667788 89999999999932232 222 2222334556666666777766654321 1122
Q ss_pred CC--CccccccccCCCCHHHHHHHH
Q 018167 332 DT--PFPLVFEPFYMPTKNKILDAI 354 (360)
Q Consensus 332 ~~--~~~~~~e~~gl~~~~~I~~~i 354 (360)
.+ -.+++.|+++. ....+++..
T Consensus 94 ~D~~~~G~i~E~~~~-~~~~~a~~~ 117 (163)
T COG1945 94 RDKSKGGYISEYAGF-CETEVADEI 117 (163)
T ss_pred CCCCcCcEEEeeccc-CcchhHHHH
Confidence 22 24677788777 554554443
No 252
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=47.68 E-value=77 Score=27.33 Aligned_cols=55 Identities=22% Similarity=0.169 Sum_probs=37.9
Q ss_pred cEEEEEechhHH----HHHHHHHHHHhc-C--CCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 240 DITLVGWGAQLS----IMEQACLDAEKE-G--ISCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 240 dv~Iia~G~~~~----~al~Aa~~L~~~-G--i~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
+++|+++|+... ....+++.|++. + -+++++|..+.-+ + +...+..++++|+|+-
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~~---~-ll~~l~~~d~vIiVDA 63 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAGM---E-LLGDMANRDHLIIADA 63 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccHH---H-HHHHHhCCCEEEEEEe
Confidence 478999999773 467788888654 3 3588999888532 2 3345556777887765
No 253
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=47.54 E-value=72 Score=33.33 Aligned_cols=149 Identities=15% Similarity=0.121 Sum_probs=77.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechh--HHHHHHHHHHHHhcCC-CeeEEE
Q 018167 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAE 115 (360)
Q Consensus 39 ~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~ 115 (360)
.++... +.++|.+.+..+ ++++ .|.. + ....+.-.- |.+|+..+- +=-..++.|.|.++.. -++++.
T Consensus 384 ~i~~~~-~~~~l~~~l~~~-~~vv--~~~~----~-~~~~~~~~~-~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~ 453 (569)
T PRK08327 384 PITPAY-LSYCLGEVADEY-DAIV--TEYP----F-VPRQARLNK-PGSYFGDGSAGGLGWALGAALGAKLATPDRLVIA 453 (569)
T ss_pred CcCHHH-HHHHHHHhcCcc-ceEE--eccH----H-HHHhcCccC-CCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEE
Confidence 355433 566676666544 4544 3432 1 122233333 677876541 2234456666766653 466666
Q ss_pred ecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC---------CCC------CC----C-CchHHH-H
Q 018167 116 IQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG---------HGG------HY----H-SQSPEA-F 172 (360)
Q Consensus 116 ~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g---------~~g------~~----H-s~~d~a-~ 172 (360)
+ ..+ |.+-..++...-+...+ +|+ .+|+...+++.- ..+ .. . ..-|++ +
T Consensus 454 i-~GDG~f~~~~~e~~l~ta~~~~------l~~-~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 525 (569)
T PRK08327 454 T-VGDGSFIFGVPEAAHWVAERYG------LPV-LVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKI 525 (569)
T ss_pred E-ecCcceeecCcHHHHHHHHHhC------CCE-EEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHH
Confidence 5 444 44444444333345444 466 555555443221 011 01 0 112443 3
Q ss_pred HcCCCCcEEEeeCCHHHHHHHHHHhHhC----CCCEEE
Q 018167 173 FCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVF 206 (360)
Q Consensus 173 ~r~iPn~~V~~P~d~~e~~~~l~~a~~~----~~P~~i 206 (360)
.+++ |...+.-.++.|+..+++.+++. ++|++|
T Consensus 526 a~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~li 562 (569)
T PRK08327 526 AEAF-GGYGERVEDPEELKGALRRALAAVRKGRRSAVL 562 (569)
T ss_pred HHhC-CCCceEeCCHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 3333 33444556999999999999875 789988
No 254
>PLN02409 serine--glyoxylate aminotransaminase
Probab=47.37 E-value=60 Score=32.12 Aligned_cols=75 Identities=11% Similarity=0.127 Sum_probs=40.3
Q ss_pred eeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhc-----CCeEEEEeCCCcCCchH--H
Q 018167 235 IREGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-----TGRLLISHEAPVTGGFG--A 307 (360)
Q Consensus 235 l~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~-----~~~ivvvEe~~~~GGlg--s 307 (360)
+++|.+|++...|....... +.++..|.++.++....=..+|.+.+.+.++. ++-+++...++.+|-+- +
T Consensus 81 ~~~Gd~Vlv~~~~~~~~~~~---~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~ 157 (401)
T PLN02409 81 LSPGDKVVSFRIGQFSLLWI---DQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLA 157 (401)
T ss_pred CCCCCEEEEeCCCchhHHHH---HHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHH
Confidence 35666677766676543322 23334577777776553334677777776653 34344444344555542 3
Q ss_pred HHHHH
Q 018167 308 EISAS 312 (360)
Q Consensus 308 ~v~~~ 312 (360)
++++.
T Consensus 158 ~i~~l 162 (401)
T PLN02409 158 GVRKL 162 (401)
T ss_pred HHHHH
Confidence 34444
No 255
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=47.07 E-value=51 Score=28.30 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=35.4
Q ss_pred EEEEEechhH----HHHHHHHHHHHhcCC-CeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 241 ITLVGWGAQL----SIMEQACLDAEKEGI-SCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 241 v~Iia~G~~~----~~al~Aa~~L~~~Gi-~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
++|+++|+.. .....++++|++... +++++|..+ -|++.-.+.+. .+.+++|+|+-
T Consensus 3 ~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~~~~~i~~-~~~d~vIiVDA 63 (156)
T PRK11544 3 DVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APENDIVAIRE-LRPERLLIVDA 63 (156)
T ss_pred EEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHHHHHHHHh-cCCCEEEEEEC
Confidence 6788889876 346677788866532 588899888 45544322221 13477777764
No 256
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=47.01 E-value=85 Score=32.43 Aligned_cols=143 Identities=15% Similarity=0.068 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcC-CCeeEEEecCcccHHHHHHHHHHHHHh
Q 018167 57 DPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAK 135 (360)
Q Consensus 57 ~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~-G~~p~~~~~f~~F~~ra~dQi~~~~a~ 135 (360)
-+.++.+-.|-.. .+-++..+.+-=|++.+- .|-|+.=.|=|.|+. |.-.++. ||+.=-..|++-|- -+|
T Consensus 19 vksvfgVPGDFNL-----~LLD~l~~~~~lrwvGn~-NELNaAYAADGYAR~~Gi~a~Vt-TfgVGeLSAlNGIA--GsY 89 (561)
T KOG1184|consen 19 VKTVFGVPGDFNL-----SLLDKLYAVPGLRWVGNC-NELNAAYAADGYARSKGIGACVT-TFGVGELSALNGIA--GAY 89 (561)
T ss_pred CceeEECCCcccH-----HHHHHhhhcCCceeeccc-chhhhhhhhcchhhhcCceEEEE-Eeccchhhhhcccc--hhh
Confidence 3567777777431 133444444223555543 688888888999996 7767776 68865466777654 233
Q ss_pred cccccCCCccccceE-EEc-CCCCCCC-C-CCCCC--chHHHHH-cCCCCc--EEEeeCCHHHH----HHHHHHhHhCCC
Q 018167 136 FRYRSGNQFNCGGLT-VRA-PYGAVGH-G-GHYHS--QSPEAFF-CHVPGL--KVVIPRSPRQA----KGLLLSCIRDPN 202 (360)
Q Consensus 136 ~~~~~~~~~~v~~~v-~~~-~~g~~g~-~-g~~Hs--~~d~a~~-r~iPn~--~V~~P~d~~e~----~~~l~~a~~~~~ 202 (360)
.. ++ |++ +++ |+-.... + =-||. ..|...+ |...++ ...+--|.+++ ..+++.++...+
T Consensus 90 AE-------~v-pVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~r 161 (561)
T KOG1184|consen 90 AE-------NV-PVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKESK 161 (561)
T ss_pred hh-------cC-CEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhcC
Confidence 32 33 333 232 2211111 1 13663 4454433 222221 12222344444 456666666799
Q ss_pred CEEEeccccccccC
Q 018167 203 PVVFFEPKWLYRLS 216 (360)
Q Consensus 203 P~~i~~~k~l~r~~ 216 (360)
||||-.|..+...+
T Consensus 162 PVYi~iP~n~~~~~ 175 (561)
T KOG1184|consen 162 PVYIGVPANLADLP 175 (561)
T ss_pred CeEEEeecccccCc
Confidence 99997777654443
No 257
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=46.64 E-value=32 Score=29.76 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=28.5
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCee
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCE 268 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~ 268 (360)
.|.+++++++|...+..+..|+.|+++|.+|.
T Consensus 56 ~~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~ 87 (155)
T PF12500_consen 56 PGERVLVLGTGEFMYLPLLLAEELEQAGADVR 87 (155)
T ss_pred CCCcEEEEccchHHHHHHHHHHHHHhcCCceE
Confidence 57899999999999999999999999986544
No 258
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=46.61 E-value=55 Score=27.24 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=33.6
Q ss_pred EEEechhHH----HHHHHHHHHHhcC--CCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 243 LVGWGAQLS----IMEQACLDAEKEG--ISCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 243 Iia~G~~~~----~al~Aa~~L~~~G--i~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
|+++|+... ....++++|++.. -+++++|..+. ++ .+...+..++++|+|+-
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~-~~---~l~~~l~~~d~viiVDA 59 (139)
T cd00518 2 VLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTL-GL---ELLDLLEGADRVIIVDA 59 (139)
T ss_pred EEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCC-HH---HHHHHHhcCCeEEEEEC
Confidence 667777652 3566777787663 46888888885 22 24455556777777765
No 259
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=46.49 E-value=1.8e+02 Score=25.66 Aligned_cols=87 Identities=24% Similarity=0.363 Sum_probs=53.7
Q ss_pred CCcEEEEEechhHHH-HHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCC---eE-EEEeCCCcCCchHHHHHHH
Q 018167 238 GSDITLVGWGAQLSI-MEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG---RL-LISHEAPVTGGFGAEISAS 312 (360)
Q Consensus 238 G~dv~Iia~G~~~~~-al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~---~i-vvvEe~~~~GGlgs~v~~~ 312 (360)
|+.+.|++-|..+.. |.-|..+....+|.-+=|++.|+--.-+|.|.+.++... ++ +.|=-++..||--.+-.+.
T Consensus 83 GKRvIiiGGGAqVsqVA~GAIsEADRHNiRGERISvDTiPlVGEE~laEAVkAV~rLpRv~iLVLAGslMGGkIteaVk~ 162 (218)
T COG1707 83 GKRVIIIGGGAQVSQVARGAISEADRHNIRGERISVDTIPLVGEEELAEAVKAVARLPRVGILVLAGSLMGGKITEAVKE 162 (218)
T ss_pred CcEEEEECCchhHHHHHHhhcchhhhcccccceeeeecccccChHHHHHHHHHHhccccceeEEEecccccchHHHHHHH
Confidence 677888888877644 555555555557888888899987788888888776543 22 2333456777643333333
Q ss_pred HHHhccccCCCceEEE
Q 018167 313 ILERCFLRLEAPVARV 328 (360)
Q Consensus 313 l~~~~~~~l~~~~~~i 328 (360)
+.+.. ..|+.++
T Consensus 163 lr~~h----gI~VISL 174 (218)
T COG1707 163 LREEH----GIPVISL 174 (218)
T ss_pred HHHhc----CCeEEEe
Confidence 44432 3565544
No 260
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=46.36 E-value=1.6e+02 Score=23.83 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=50.4
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcH--HHHHHHHhc---CCeEEEEeCCCcCCchHHHHHH-HH
Q 018167 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDK--ETVEASVRK---TGRLLISHEAPVTGGFGAEISA-SI 313 (360)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~--~~l~~~~~~---~~~ivvvEe~~~~GGlgs~v~~-~l 313 (360)
+++|++.|......+++++.+--+.-++..+++..=...+. +.+.+.+++ .+.++++-| ..||--..++. .+
T Consensus 3 ~ili~sHG~~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltD--l~GGSp~n~a~~~~ 80 (116)
T TIGR00824 3 AIIISGHGQAAIALLKSAEMIFGEQNNVGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVD--IFGGSPYNAAARII 80 (116)
T ss_pred EEEEEecHHHHHHHHHHHHHHcCCcCCeEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEe--CCCCCHHHHHHHHH
Confidence 48899999999999999998753333577777554332221 234444443 245666655 24554444443 33
Q ss_pred HHhccccCCCceEEEecCCCC
Q 018167 314 LERCFLRLEAPVARVCGLDTP 334 (360)
Q Consensus 314 ~~~~~~~l~~~~~~i~~~~~~ 334 (360)
.++ .++.-|+|.+-|
T Consensus 81 ~~~------~~~~vIsG~NLp 95 (116)
T TIGR00824 81 VDK------PHMDVIAGVNLP 95 (116)
T ss_pred hhc------CCEEEEEecCHH
Confidence 232 345567777654
No 261
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=46.33 E-value=1e+02 Score=27.43 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=51.3
Q ss_pred echhHHHHHHHHHHHHhcCCCeeEEEeccc--cCC----------------c-HHHHHHHHhcCCeEEEEeCCCcCCchH
Q 018167 246 WGAQLSIMEQACLDAEKEGISCELIDLKTL--IPW----------------D-KETVEASVRKTGRLLISHEAPVTGGFG 306 (360)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~i--kP~----------------d-~~~l~~~~~~~~~ivvvEe~~~~GGlg 306 (360)
+|++...+.++++.+++.|.++++++++-. +|- | .+.|.+.+..++.||+.- ....|++.
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gs-Pvy~g~vs 91 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGS-PVYFGNVS 91 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeC-CeecCCch
Confidence 588888888888999989999999999865 331 2 356667777788776654 44678888
Q ss_pred HHHHHHHHH
Q 018167 307 AEISASILE 315 (360)
Q Consensus 307 s~v~~~l~~ 315 (360)
+.+..++-.
T Consensus 92 a~~K~fiDR 100 (207)
T COG0655 92 AQMKAFIDR 100 (207)
T ss_pred HHHHHHHhh
Confidence 888776644
No 262
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=46.10 E-value=37 Score=35.21 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHH--------HHHcCCCCcEEEee
Q 018167 125 AFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPE--------AFFCHVPGLKVVIP 184 (360)
Q Consensus 125 a~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~--------a~~r~iPn~~V~~P 184 (360)
+.|||+.-+...+-. ..+ |+++--- .|..|.|||.||. +-+|+.+|+.++.-
T Consensus 160 tIeqI~svi~IAka~--P~~---pIilq~e---gGraGGHHSweDld~llL~tYs~lR~~~NIvl~vG 219 (717)
T COG4981 160 TIEQIRSVIRIAKAN--PTF---PIILQWE---GGRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVG 219 (717)
T ss_pred cHHHHHHHHHHHhcC--CCC---ceEEEEe---cCccCCccchhhcccHHHHHHHHHhcCCCEEEEec
Confidence 467777544444322 113 4443222 2346679998885 44689999988764
No 263
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=45.80 E-value=1.4e+02 Score=31.35 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCC------CeeEEEecCcc--cH-HHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCC--
Q 018167 97 GIVGFAIGLAAMG------NRAIAEIQFAD--YI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-- 165 (360)
Q Consensus 97 ~~vg~AaGlA~~G------~~p~~~~~f~~--F~-~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~H-- 165 (360)
+.+++|.|+|+.- -++++++ ..+ |. ...++-+.. ++..+ .|+ . ++.+..+.. -++++.
T Consensus 121 ~gl~~AvG~A~a~~~~~~~~~~v~~i-~GDG~l~eG~~~Eal~~-A~~~~------~nl-i-~IvdnN~~~-i~~~~~~~ 189 (580)
T PRK05444 121 TSISAALGMAKARDLKGGEDRKVVAV-IGDGALTGGMAFEALNN-AGDLK------SDL-I-VILNDNEMS-ISPNVGAL 189 (580)
T ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEE-EcccccccCHHHHHHHH-HHhhC------CCE-E-EEEECCCCc-CCCcchhh
Confidence 4556777777641 3456664 444 32 255666653 45433 255 3 334444432 222221
Q ss_pred ----CchHH-HHHcCCCCcEEEee---CCHHHHHHHHHHhHhCCCCEEEecc
Q 018167 166 ----SQSPE-AFFCHVPGLKVVIP---RSPRQAKGLLLSCIRDPNPVVFFEP 209 (360)
Q Consensus 166 ----s~~d~-a~~r~iPn~~V~~P---~d~~e~~~~l~~a~~~~~P~~i~~~ 209 (360)
..+++ ..+++. |+.++.+ .|..++..+++.+.+.++|++|...
T Consensus 190 ~~~~~~~~~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~ 240 (580)
T PRK05444 190 SNYLARLRSSTLFEEL-GFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHVV 240 (580)
T ss_pred hhhhccccHHHHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 11222 344554 6665544 7888999999888877899998543
No 264
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=45.51 E-value=62 Score=23.19 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=39.0
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhc--CCeEEEEeCCCcCCchHHHH
Q 018167 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK--TGRLLISHEAPVTGGFGAEI 309 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~--~~~ivvvEe~~~~GGlgs~v 309 (360)
++|.+. +.-..|.+|.+.|++.|++.+.+|+..- |-..+.+.+.... +-..|+++. ...||+.+..
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g-~~igg~~~~~ 69 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGD-VHIGGCDDLY 69 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECC-EEEeChHHHH
Confidence 344443 3347788888999999999999998753 1111222222221 234566655 4568876543
No 265
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=45.37 E-value=1.8e+02 Score=30.37 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=61.7
Q ss_pred CCcEEechhHHHHHHH----HHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCC
Q 018167 85 KSRVFNTPLCEQGIVG----FAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (360)
Q Consensus 85 p~r~i~~GIaE~~~vg----~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~ 157 (360)
|.+|+..+ -.+.+| .|.|.++.. -+|++++ -.+ |++.+-| +- .+...+ +|+ .+|+...+++
T Consensus 420 p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~e-L~-Tavr~~------lpv-i~vV~NN~~y 487 (579)
T TIGR03457 420 PRKFLAPM--SFGNCGYAFPTIIGAKIAAPDRPVVAY-AGDGAWGMSMNE-IM-TAVRHD------IPV-TAVVFRNRQW 487 (579)
T ss_pred CCeEEcCC--ccccccchHHHHHhhhhhCCCCcEEEE-EcchHHhccHHH-HH-HHHHhC------CCe-EEEEEECcch
Confidence 78999653 223344 666666663 4666665 444 5443322 32 244444 456 5555555443
Q ss_pred CC--------CCC----C-CCCchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHh---CCCCEEE
Q 018167 158 VG--------HGG----H-YHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIR---DPNPVVF 206 (360)
Q Consensus 158 ~g--------~~g----~-~Hs~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~---~~~P~~i 206 (360)
.. .++ . .+..-|. ++.+++ |..-+.-.+++|+..+++.+++ .++|++|
T Consensus 488 g~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~g~~v~~~~el~~al~~a~~~~~~~~p~li 552 (579)
T TIGR03457 488 GAEKKNQVDFYNNRFVGTELESELSFAGIADAM-GAKGVVVDKPEDVGPALKKAIAAQAEGKTTVI 552 (579)
T ss_pred HHHHHHHHHhhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhCCCCCcEEE
Confidence 21 111 1 1111133 344444 6677788999999999999987 4789988
No 266
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=45.37 E-value=39 Score=27.29 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCC
Q 018167 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG 291 (360)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~ 291 (360)
+.-..|.+|.+.|++.|++.+++|+.. .|...+.+.+.++..+
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 7 PNCTTCKKARRWLEANGIEYQFIDIGE-DGPTREELLDILSLLE 49 (117)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEecCC-ChhhHHHHHHHHHHcC
Confidence 345678888899999999999999965 7888888877777665
No 267
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=45.13 E-value=47 Score=28.06 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=31.0
Q ss_pred EEEEEechhHH----HHHHHHHHHHhcCC--CeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 241 ITLVGWGAQLS----IMEQACLDAEKEGI--SCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 241 v~Iia~G~~~~----~al~Aa~~L~~~Gi--~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
++|+++|+... ....++++|++... +++++|.-+. |++...+.+. .++.++++|+-
T Consensus 1 ~lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~v~d~gt~-~~~~~~~~~~-~~~d~viivDA 62 (146)
T TIGR00142 1 LVLLCVGNELMGDDGAGPYLAEKCAAAPKEENWVVINAGTV-PENFTVAIRE-LRPTHILIVDA 62 (146)
T ss_pred CEEEEeCccccccCcHHHHHHHHHHhccCCCCEEEEECCCC-hHHHHHHHHh-cCCCEEEEEEC
Confidence 35777777652 35566777765432 4677777775 5443222111 13566666654
No 268
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=44.88 E-value=1.1e+02 Score=25.29 Aligned_cols=90 Identities=17% Similarity=0.291 Sum_probs=48.3
Q ss_pred CcchhHHHHhhhcccccccchhhHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCcccc--chh
Q 018167 1 MASGLRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRC--TTG 78 (360)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~--~~~ 78 (360)
+|+|++++++++.+....... -+..+.+.--+..+.+.+++.++...+..|++ =.|++ |+.++. ...
T Consensus 12 lA~Gi~~~~~~~~g~~~~i~~---------~gg~~d~~~gt~~~~I~~ai~~~~~~~dgVlv-l~DLG-gs~~n~e~a~~ 80 (125)
T TIGR02364 12 IAEGIKELIKQMAGDDVTIIS---------AGGTDDGRLGTSPDKIIEAIEKADNEADGVLI-FYDLG-SAVMNAEMAVE 80 (125)
T ss_pred HHHHHHHHHHHHcCCCccEEE---------EecCCCCCccchHHHHHHHHHHhcCCCCCEEE-EEcCC-CcHhHHHHHHH
Confidence 467788888877653222222 11222333446677788888776553444544 45884 333210 112
Q ss_pred HHHHhCC--C--cEEechhHHHHHHHHHH
Q 018167 79 LADRFGK--S--RVFNTPLCEQGIVGFAI 103 (360)
Q Consensus 79 ~~~~~gp--~--r~i~~GIaE~~~vg~Aa 103 (360)
+.+ . + + .-+|.|+-|..+.+...
T Consensus 81 ~l~-~-~~~~~v~g~nlPlvega~~aa~~ 107 (125)
T TIGR02364 81 LLE-D-EDRDKVHLVDAPLVEGAFAAAVE 107 (125)
T ss_pred Hhc-c-ccccEEEEechhHHHHHHHHHHH
Confidence 222 1 2 1 45789999987766544
No 269
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=44.79 E-value=1.9e+02 Score=30.27 Aligned_cols=111 Identities=11% Similarity=-0.018 Sum_probs=61.9
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|++.|- +=-..++.|.|.++.. -++++++ -.+ |.+..-| |- -+...+ +|+ .+|+...+++.-
T Consensus 411 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i-~GDG~f~m~~~e-L~-Ta~r~~------l~v-~ivV~NN~~yg~ 480 (574)
T PRK07979 411 PRRWINSGGLGTMGFGLPAALGVKMALPEETVVCV-TGDGSIQMNIQE-LS-TALQYE------LPV-LVLNLNNRYLGM 480 (574)
T ss_pred CCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEE-EcchhhhccHHH-HH-HHHHhC------CCe-EEEEEeCchhhH
Confidence 788887641 1113455666666662 3555554 333 5444322 33 245444 466 555555544321
Q ss_pred --------CCCCCC-----CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC---CCCEEE
Q 018167 160 --------HGGHYH-----SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD---PNPVVF 206 (360)
Q Consensus 160 --------~~g~~H-----s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~---~~P~~i 206 (360)
.++... ..-|+ .+.+++ |..-+.-.++.|+..+++.+++. ++|.+|
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lI 543 (574)
T PRK07979 481 VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAY-GHVGIQISHPDELESKLSEALEQVRNNRLVFV 543 (574)
T ss_pred HHHHHHHhcCCccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhccCCCCcEEE
Confidence 111111 11133 344444 56667779999999999999985 899988
No 270
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=44.56 E-value=1.2e+02 Score=29.64 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=17.8
Q ss_pred CCCCcEEEeeCCHHHH----HHHHHHhHhCCCCEEE
Q 018167 175 HVPGLKVVIPRSPRQA----KGLLLSCIRDPNPVVF 206 (360)
Q Consensus 175 ~iPn~~V~~P~d~~e~----~~~l~~a~~~~~P~~i 206 (360)
.+|+..| .-.|..++ ..+++.+.+.++|++|
T Consensus 207 G~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lI 241 (341)
T TIGR03181 207 GIPGVQV-DGNDVLAVYAVTKEAVERARSGGGPTLI 241 (341)
T ss_pred CCCEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 4565554 22333333 4455556666899998
No 271
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=44.00 E-value=2.8e+02 Score=26.99 Aligned_cols=74 Identities=19% Similarity=0.126 Sum_probs=47.2
Q ss_pred eCCcEEEEEech-hHHHHHHHHHHHHhcCCC---eeEEEeccccCCcHH-----HHHHHHhcCCeEEEEeCCCcCCchHH
Q 018167 237 EGSDITLVGWGA-QLSIMEQACLDAEKEGIS---CELIDLKTLIPWDKE-----TVEASVRKTGRLLISHEAPVTGGFGA 307 (360)
Q Consensus 237 ~G~dv~Iia~G~-~~~~al~Aa~~L~~~Gi~---v~Vi~~~~ikP~d~~-----~l~~~~~~~~~ivvvEe~~~~GGlgs 307 (360)
.|+. +|+++|. ...+..+|++.+++.|.+ +.++++.+-.|-+.+ .|...-+.++..|-.-+|. .|...
T Consensus 132 ~gkP-vilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~SdHt--~G~~~ 208 (329)
T TIGR03569 132 FGKP-VILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDHT--LGIEA 208 (329)
T ss_pred cCCc-EEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECCCC--ccHHH
Confidence 3444 4778885 468888999999888864 888888887776654 3332223455455567775 45555
Q ss_pred HHHHHH
Q 018167 308 EISASI 313 (360)
Q Consensus 308 ~v~~~l 313 (360)
.+++..
T Consensus 209 ~~aAva 214 (329)
T TIGR03569 209 PIAAVA 214 (329)
T ss_pred HHHHHH
Confidence 555443
No 272
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=43.81 E-value=74 Score=26.71 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=32.8
Q ss_pred EEEechhH----HHHHHHHHHHHhcC---CCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 243 LVGWGAQL----SIMEQACLDAEKEG---ISCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 243 Iia~G~~~----~~al~Aa~~L~~~G---i~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
|+++|+.. .....++++|++.. -+++++|..+.- ..+...+.++.++|+|+-
T Consensus 2 ViGiGN~l~~DDg~G~~v~~~L~~~~~~~~~v~~id~g~~~----~~l~~~l~~~d~viiVDA 60 (145)
T TIGR00072 2 VLGIGNILRGDDGFGPRVAERLEERYEFPPGVEVLDGGTLG----LELLDAIEGADRVIVVDA 60 (145)
T ss_pred EEEECchhcccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH----HHHHHHHhCCCEEEEEEc
Confidence 67777765 23556777776552 357888888753 223455566777777765
No 273
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=43.58 E-value=72 Score=26.78 Aligned_cols=53 Identities=8% Similarity=0.077 Sum_probs=32.1
Q ss_pred EEEechhH----HHHHHHHHHHHhcCC--CeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 243 LVGWGAQL----SIMEQACLDAEKEGI--SCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 243 Iia~G~~~----~~al~Aa~~L~~~Gi--~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
|+++|+.. .....+++.|+++.. +++++|.-+. ++ +.+.+.++..+++|+|+-
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~-~~--~l~~~~~~~~d~viiVDA 60 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR-GI--HLAYELLDGYDTLILVDA 60 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC-HH--HHHHHHHhcCCEEEEEEe
Confidence 66777765 246667777876644 3778887764 22 222234555677777765
No 274
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=43.20 E-value=50 Score=28.13 Aligned_cols=59 Identities=22% Similarity=0.149 Sum_probs=36.2
Q ss_pred CcEEEEEechhHH----HHHHHHHHHHhcC----CCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 239 SDITLVGWGAQLS----IMEQACLDAEKEG----ISCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 239 ~dv~Iia~G~~~~----~al~Aa~~L~~~G----i~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
++++|+++|+... ....++++|++.+ -+++++|.-+.-|-....+. .+.+..++|+|+-
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~~~l~~~~-~~~~~d~vIivDA 69 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAPHFVFTLI-PQSKWKKIIVVDI 69 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHHHHHHHHh-hhcCCCEEEEEEc
Confidence 4688999998762 4667788886432 24788887774432211111 2356677777765
No 275
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=43.14 E-value=58 Score=27.06 Aligned_cols=87 Identities=20% Similarity=0.172 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEec----
Q 018167 255 QACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCG---- 330 (360)
Q Consensus 255 ~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~---- 330 (360)
.|.+.|++.|++. +-++-++++... +.....||++++... .. +....+ ....++..++-
T Consensus 49 ~a~~~l~~~Gid~---s~h~s~~l~~~~----~~~aDlIi~m~~~~~-----~~----~~~~~~-~~~~~v~~~~~~~~~ 111 (141)
T cd00115 49 RAIAVLAEHGIDI---SGHRARQLTEDD----FDEFDLIITMDESNL-----AE----LLEPPP-GGRAKVELLGEYAGD 111 (141)
T ss_pred HHHHHHHHcCCCc---ccCeeeeCCHHH----HHhCCEEEEECHHHH-----HH----HHhcCC-CCcceEEeHhhhCcC
Confidence 3455667779886 335557777653 345788999977531 11 111110 11233444420
Q ss_pred --CCCCccccccccCCCCHHHHHHHHHHhhh
Q 018167 331 --LDTPFPLVFEPFYMPTKNKILDAIKSTVN 359 (360)
Q Consensus 331 --~~~~~~~~~e~~gl~~~~~I~~~i~~~l~ 359 (360)
.++|+..-.+.|.- ..+.|.+.++++++
T Consensus 112 ~~i~DP~~~~~~~f~~-~~~~I~~~v~~l~~ 141 (141)
T cd00115 112 REVPDPYYGSLEAFEE-VYDLIEEAIKALLK 141 (141)
T ss_pred CCCCCCCCCChHHHHH-HHHHHHHHHHHHhC
Confidence 45666544555665 67788888887764
No 276
>PTZ00089 transketolase; Provisional
Probab=43.14 E-value=2.5e+02 Score=30.14 Aligned_cols=89 Identities=6% Similarity=-0.076 Sum_probs=51.3
Q ss_pred eeEEEecCcccH-HHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCC--CchHH-HHHcCCCCcEEEeeC-
Q 018167 111 RAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVVIPR- 185 (360)
Q Consensus 111 ~p~~~~~f~~F~-~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~H--s~~d~-a~~r~iPn~~V~~P~- 185 (360)
+.|+.+-=..+. ..+||-+. .++..++ +. -+++.+..+. .-+++++ ..+++ ..++++ |+.++.+.
T Consensus 150 ~v~~v~GDG~l~eG~~~EAl~-~A~~~~L------~n-Li~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~i~v~d 219 (661)
T PTZ00089 150 YVYVICGDGCLQEGVSQEALS-LAGHLGL------EK-LIVLYDDNKI-TIDGNTDLSFTEDVEKKYEAY-GWHVIEVDN 219 (661)
T ss_pred EEEEEECccchhhHHHHHHHH-HHHHhCC------CC-EEEEEECCCc-ccccCcccccCccHHHHHHhc-CCcEEEeCC
Confidence 355443222233 46788765 4665553 32 2344554443 2233433 13443 567777 99999984
Q ss_pred ---CHHHHHHHHHHhHhC-CCCEEEecc
Q 018167 186 ---SPRQAKGLLLSCIRD-PNPVVFFEP 209 (360)
Q Consensus 186 ---d~~e~~~~l~~a~~~-~~P~~i~~~ 209 (360)
|..++..+++.+.+. ++|++|...
T Consensus 220 G~~D~~~l~~a~~~a~~~~~~P~~I~~~ 247 (661)
T PTZ00089 220 GNTDFDGLRKAIEEAKKSKGKPKLIIVK 247 (661)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 666777777777665 689999644
No 277
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=42.88 E-value=1.6e+02 Score=29.12 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=28.5
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC----CCCEEE
Q 018167 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVF 206 (360)
Q Consensus 171 a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~----~~P~~i 206 (360)
+.--.||+++| -=.|...+..+.++|++. ++|+.|
T Consensus 218 a~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLI 256 (358)
T COG1071 218 AAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLI 256 (358)
T ss_pred hhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 34447999988 888888888888888873 789999
No 278
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=42.61 E-value=3.4e+02 Score=28.33 Aligned_cols=109 Identities=12% Similarity=0.054 Sum_probs=59.3
Q ss_pred CCcEEechhHHHHHH----HHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCC
Q 018167 85 KSRVFNTPLCEQGIV----GFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (360)
Q Consensus 85 p~r~i~~GIaE~~~v----g~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~ 157 (360)
|.+|+..+. ...+ +.|.|.++.- -+|++.+ -.| |++-.-| +- .+...+ +|+ .+|+...+++
T Consensus 398 ~~~~~~~~~--~gsmG~glpaAiGa~la~p~r~Vv~i-~GDGsf~m~~~e-L~-Tavr~~------lpi-~~VV~NN~~y 465 (575)
T TIGR02720 398 KNKWITSNL--FATMGVGVPGAIAAKLNYPDRQVFNL-AGDGAFSMTMQD-LL-TQVQYH------LPV-INIVFSNCTY 465 (575)
T ss_pred CCeEEcCCC--cchhhchHHHHHHHHHhCCCCcEEEE-EcccHHHhhHHH-HH-HHHHhC------CCe-EEEEEeCCcc
Confidence 678887652 2333 4444444442 3566664 444 5444322 32 244444 456 5555554443
Q ss_pred CC-------CCCCCC----CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhH--hCCCCEEE
Q 018167 158 VG-------HGGHYH----SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCI--RDPNPVVF 206 (360)
Q Consensus 158 ~g-------~~g~~H----s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~--~~~~P~~i 206 (360)
.. .++.+. ..-|. ++.+++ |..-..-.+..|+...+++++ +.++|++|
T Consensus 466 g~i~~~~~~~~~~~~~~~~~~~df~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~p~li 527 (575)
T TIGR02720 466 GFIKDEQEDTNQPLIGVDFNDADFAKIAEGV-GAVGFRVNKIEQLPAVFEQAKAIKQGKPVLI 527 (575)
T ss_pred HHHHHHHHHhCCCcccccCCCCCHHHHHHHC-CCEEEEeCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 21 111111 11233 333444 566666799999999999999 77899988
No 279
>PRK08611 pyruvate oxidase; Provisional
Probab=42.47 E-value=2.6e+02 Score=29.22 Aligned_cols=111 Identities=15% Similarity=0.096 Sum_probs=61.3
Q ss_pred CCcEEec-hhHHH-HHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCC-
Q 018167 85 KSRVFNT-PLCEQ-GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (360)
Q Consensus 85 p~r~i~~-GIaE~-~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~- 158 (360)
|.+|+.. +..-. ..++.|.|.++.. -+|++.+ -.+ |++-. ..+- .+...+ +|+ .+|+...+++.
T Consensus 398 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i-~GDGsf~m~~-~eL~-Ta~r~~------l~~-iivV~NN~~~g~ 467 (576)
T PRK08611 398 NQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAI-CGDGGFSMVM-QDFV-TAVKYK------LPI-VVVVLNNQQLAF 467 (576)
T ss_pred CCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEE-EcccHHhhhH-HHHH-HHHHhC------CCe-EEEEEeCCcchH
Confidence 6777752 22111 2344556666652 4667765 444 54443 2233 244444 455 45555544432
Q ss_pred ------CCCCCC---C-CchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 159 ------GHGGHY---H-SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 159 ------g~~g~~---H-s~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
..++.. . ..-|. ++-+++ |..-+...+++|+..+++++++.++|++|
T Consensus 468 i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 525 (576)
T PRK08611 468 IKYEQQAAGELEYAIDLSDMDYAKFAEAC-GGKGYRVEKAEELDPAFEEALAQDKPVII 525 (576)
T ss_pred HHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 011111 1 11233 333333 66777889999999999999999999999
No 280
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=42.38 E-value=1.9e+02 Score=30.37 Aligned_cols=111 Identities=12% Similarity=0.077 Sum_probs=61.0
Q ss_pred CCcEEechh-HHH-HHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL-CEQ-GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI-aE~-~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+- .=. ..++.|.|.++.. -+|++.+ ..+ |++-. ..+.+ +...+ +|+ .+|+...+++..
T Consensus 425 p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i-~GDG~f~~~~-~el~T-a~~~~------lpv-~ivV~NN~~y~~ 494 (588)
T PRK07525 425 GRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGF-AGDGAWGISM-NEVMT-AVRHN------WPV-TAVVFRNYQWGA 494 (588)
T ss_pred CCeEEccccccccccHHHHHHHHHHhCCCCcEEEE-EcCchHhccH-HHHHH-HHHhC------CCe-EEEEEeCchhHH
Confidence 788886431 111 2455667777764 4677765 444 54443 22443 44444 456 555555544320
Q ss_pred --------CCC----CCC-CchHHH-HHcCCCCcEEEeeCCHHHHHHHHHHhHhC---CCCEEE
Q 018167 160 --------HGG----HYH-SQSPEA-FFCHVPGLKVVIPRSPRQAKGLLLSCIRD---PNPVVF 206 (360)
Q Consensus 160 --------~~g----~~H-s~~d~a-~~r~iPn~~V~~P~d~~e~~~~l~~a~~~---~~P~~i 206 (360)
.++ ... ..-|+. +.+++ |..-+.-.++.|+...++.+++. ++|++|
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lI 557 (588)
T PRK07525 495 EKKNQVDFYNNRFVGTELDNNVSYAGIAEAM-GAEGVVVDTQEELGPALKRAIDAQNEGKTTVI 557 (588)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCCCcEEE
Confidence 111 111 112433 33333 55556668999999999999975 489988
No 281
>PRK10638 glutaredoxin 3; Provisional
Probab=42.22 E-value=78 Score=23.57 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=38.1
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhc-CCeEEEEeCCCcCCchHHH
Q 018167 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-TGRLLISHEAPVTGGFGAE 308 (360)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~-~~~ivvvEe~~~~GGlgs~ 308 (360)
+++|.+.-. -..|.+|.+.|++.|++.+++|+..-... .+.+.+.... +-..|+++ +...||+.+.
T Consensus 3 ~v~ly~~~~-Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~-~~~l~~~~g~~~vP~i~~~-g~~igG~~~~ 69 (83)
T PRK10638 3 NVEIYTKAT-CPFCHRAKALLNSKGVSFQEIPIDGDAAK-REEMIKRSGRTTVPQIFID-AQHIGGCDDL 69 (83)
T ss_pred cEEEEECCC-ChhHHHHHHHHHHcCCCcEEEECCCCHHH-HHHHHHHhCCCCcCEEEEC-CEEEeCHHHH
Confidence 355555333 36788888899999999999988641111 1223222111 22345554 5567988553
No 282
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=42.02 E-value=2.5e+02 Score=27.69 Aligned_cols=77 Identities=12% Similarity=0.132 Sum_probs=43.7
Q ss_pred CcHHHHHHHHhc-CCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCcc-ccccccCCCCHHHHHHHHH
Q 018167 278 WDKETVEASVRK-TGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFP-LVFEPFYMPTKNKILDAIK 355 (360)
Q Consensus 278 ~d~~~l~~~~~~-~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~-~~~e~~gl~~~~~I~~~i~ 355 (360)
||.....+.++. ..++ =+--++ +|.+-..+.+.+.... ....| .|||...+..+ .++++||-|+++.+++.+.
T Consensus 89 Fd~~lAl~a~~~G~~~i-RINPGN-ig~~~~~v~~vv~~ak--~~~ip-IRIGvN~GSL~~~~~~~yg~~t~eamveSAl 163 (360)
T PRK00366 89 FDYRLALAAAEAGADAL-RINPGN-IGKRDERVREVVEAAK--DYGIP-IRIGVNAGSLEKDLLEKYGEPTPEALVESAL 163 (360)
T ss_pred CCHHHHHHHHHhCCCEE-EECCCC-CCchHHHHHHHHHHHH--HCCCC-EEEecCCccChHHHHHHcCCCCHHHHHHHHH
Confidence 465555555554 3433 333333 3554445555443311 01233 47865555543 5688899899999999988
Q ss_pred Hhhh
Q 018167 356 STVN 359 (360)
Q Consensus 356 ~~l~ 359 (360)
+.++
T Consensus 164 ~~~~ 167 (360)
T PRK00366 164 RHAK 167 (360)
T ss_pred HHHH
Confidence 7543
No 283
>PRK08105 flavodoxin; Provisional
Probab=41.98 E-value=28 Score=29.57 Aligned_cols=34 Identities=15% Similarity=0.031 Sum_probs=24.0
Q ss_pred EEEechhHHHHHHHHHHH----HhcCCCeeEEEecccc
Q 018167 243 LVGWGAQLSIMEQACLDA----EKEGISCELIDLKTLI 276 (360)
Q Consensus 243 Iia~G~~~~~al~Aa~~L----~~~Gi~v~Vi~~~~ik 276 (360)
.|-||+.+..+.+.|+.| .+.|+++.|+++..+.
T Consensus 5 ~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~ 42 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELS 42 (149)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCC
Confidence 455787777776666554 5568999999876654
No 284
>PRK06703 flavodoxin; Provisional
Probab=41.93 E-value=92 Score=26.08 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=21.9
Q ss_pred EEEechhH----HHHHHHHHHHHhcCCCeeEEEecccc
Q 018167 243 LVGWGAQL----SIMEQACLDAEKEGISCELIDLKTLI 276 (360)
Q Consensus 243 Iia~G~~~----~~al~Aa~~L~~~Gi~v~Vi~~~~ik 276 (360)
+|.|+++. ..|...++.|++.|+++++.++....
T Consensus 5 ~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~ 42 (151)
T PRK06703 5 LIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMD 42 (151)
T ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCC
Confidence 44445444 44555556666778999999887643
No 285
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=41.84 E-value=2.7e+02 Score=29.34 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=58.0
Q ss_pred EEechhHHHHHHHHHHHHhcC----CC-eeEEEecCcc--cH-HHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 88 VFNTPLCEQGIVGFAIGLAAM----GN-RAIAEIQFAD--YI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 88 ~i~~GIaE~~~vg~AaGlA~~----G~-~p~~~~~f~~--F~-~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
++.+|+.= +.+++|.|+|++ |. ..++++ +.+ +. ..+||-+.+ ++.++ .|+ .+ +........
T Consensus 109 ~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~-iGDG~~~eG~~~EAln~-A~~~k------~~l-i~-Ii~dN~~si 177 (581)
T PRK12315 109 FFTVGHTS-TSIALATGLAKARDLKGEKGNIIAV-IGDGSLSGGLALEGLNN-AAELK------SNL-II-IVNDNQMSI 177 (581)
T ss_pred CcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEE-ECchhhhcchHHHHHHH-HHhhC------CCE-EE-EEECCCCcC
Confidence 35666644 567788888775 32 233332 554 33 367887764 66554 355 33 334333221
Q ss_pred C---CCCCCCch--------H-HHHHcCCCCcEEE---eeCCHHHHHHHHHHhHhCCCCEEEec
Q 018167 160 H---GGHYHSQS--------P-EAFFCHVPGLKVV---IPRSPRQAKGLLLSCIRDPNPVVFFE 208 (360)
Q Consensus 160 ~---~g~~Hs~~--------d-~a~~r~iPn~~V~---~P~d~~e~~~~l~~a~~~~~P~~i~~ 208 (360)
. ++..+... + ...+.++ |+..+ ...|..++..+++.+-+.++|++|..
T Consensus 178 ~~~~~~~~~~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~ 240 (581)
T PRK12315 178 AENHGGLYKNLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHI 240 (581)
T ss_pred CCCCchhhhhhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 1 11111111 1 2345554 55554 45566677777777666689999953
No 286
>PRK07308 flavodoxin; Validated
Probab=41.22 E-value=1.2e+02 Score=25.13 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=34.2
Q ss_pred echhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHH
Q 018167 246 WGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILE 315 (360)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~ 315 (360)
+|++-..|...++.|++.|+.+++.++....+ + .+.+...|++.=-.+-.|-+-..+..++..
T Consensus 12 tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~---~----~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~ 74 (146)
T PRK07308 12 TGNTEEIADIVADKLRELGHDVDVDECTTVDA---S----DFEDADIAIVATYTYGDGELPDEIVDFYED 74 (146)
T ss_pred CchHHHHHHHHHHHHHhCCCceEEEecccCCH---h----HhccCCEEEEEeCccCCCCCCHHHHHHHHH
Confidence 34444556666667777799999888876543 1 234455555533222123344455555443
No 287
>PRK12474 hypothetical protein; Provisional
Probab=41.12 E-value=2.4e+02 Score=28.94 Aligned_cols=146 Identities=10% Similarity=0.093 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhH-HHHHHHHHHHHhcC-CCeeEEEecCcc--
Q 018167 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC-EQGIVGFAIGLAAM-GNRAIAEIQFAD-- 120 (360)
Q Consensus 45 a~~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIa-E~~~vg~AaGlA~~-G~~p~~~~~f~~-- 120 (360)
.+-..|.+.+.+| . ++..|.+....+ ....|.-.. |.+|+..+-. =-..+..|.|.++. .-++++++ -.+
T Consensus 345 ~~~~~l~~~l~~d-~--iv~~d~g~~~~~-~~~~~~~~~-p~~~~~~~~gsmG~glpaAiGa~lA~p~r~vv~i-~GDG~ 418 (518)
T PRK12474 345 GVAQLIAHRTPDQ-A--IYADEALTSGLF-FDMSYDRAR-PHTHLPLTGGSIGQGLPLAAGAAVAAPDRKVVCP-QGDGG 418 (518)
T ss_pred HHHHHHHHHCCCC-e--EEEECCCcCHHH-HHHhhcccC-CCCEEccCCCccCccHHHHHHHHHHCCCCcEEEE-EcCch
Confidence 3555666655433 2 334454421111 112233244 7888865311 01234466666665 23566665 344
Q ss_pred cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC---------C--CCCC-------CC-chHH-HHHcCCCCcE
Q 018167 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG---------H--GGHY-------HS-QSPE-AFFCHVPGLK 180 (360)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g---------~--~g~~-------Hs-~~d~-a~~r~iPn~~ 180 (360)
|.+.. ..+- -+...+ +|+ .+|+...+++.- . .+.. +. .-|. .+.+++ |..
T Consensus 419 f~m~~-qEL~-Ta~r~~------lpv-~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~ 488 (518)
T PRK12474 419 AAYTM-QALW-TMAREN------LDV-TVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGL-GVE 488 (518)
T ss_pred hcchH-HHHH-HHHHHC------CCc-EEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHC-CCe
Confidence 44333 2233 244444 466 566555554321 0 0100 11 1133 333444 667
Q ss_pred EEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 181 VVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 181 V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
-..-.++.|+..+++++++.++|++|
T Consensus 489 ~~rv~~~~eL~~al~~a~~~~~p~li 514 (518)
T PRK12474 489 ASRATTAEEFSAQYAAAMAQRGPRLI 514 (518)
T ss_pred EEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 77889999999999999998999988
No 288
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=40.90 E-value=1.2e+02 Score=24.98 Aligned_cols=57 Identities=11% Similarity=-0.027 Sum_probs=39.0
Q ss_pred EEEEEechhHHHHHHHHHHHHhc-CCCeeEEEeccccCCcHHHHHHHHhc-CCeEEEEe
Q 018167 241 ITLVGWGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDKETVEASVRK-TGRLLISH 297 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~ikP~d~~~l~~~~~~-~~~ivvvE 297 (360)
|+.+++=...+.+.+.+-..+.+ --++.+|.+++.--+|.+.|.+.+.+ .+.|+++-
T Consensus 2 Il~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~g 60 (124)
T PF02662_consen 2 ILAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAG 60 (124)
T ss_pred EEEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeC
Confidence 44555555555555444433322 34799999999999999999988875 57888763
No 289
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=40.42 E-value=3.8e+02 Score=27.65 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=59.6
Q ss_pred CCcEEechhHHHHHHH----HHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCC
Q 018167 85 KSRVFNTPLCEQGIVG----FAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (360)
Q Consensus 85 p~r~i~~GIaE~~~vg----~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~ 157 (360)
|.+|+..+ -.+.+| .|.|.++.. -+|++++ -.+ |.+-. ..|- .+...+ +|+ .+|+...+++
T Consensus 394 ~~~~~~~~--~~g~mG~glpaaiGa~la~p~~~vv~i-~GDG~f~m~~-~EL~-Ta~~~~------lpi-~~vV~NN~~y 461 (539)
T TIGR03393 394 DVNFIVQP--LWGSIGYTLPAAFGAQTACPNRRVILL-IGDGSAQLTI-QELG-SMLRDK------QHP-IILVLNNEGY 461 (539)
T ss_pred CCeEEech--hhhhhhhHHHHHHHHHhcCCCCCeEEE-EcCcHHHhHH-HHHH-HHHHcC------CCC-EEEEEeCCce
Confidence 56777654 234344 455555552 3566665 444 44433 3333 244444 466 5665555543
Q ss_pred CC----C--CCCCC--CchHHH-HHcCC--C-CcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 158 VG----H--GGHYH--SQSPEA-FFCHV--P-GLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 158 ~g----~--~g~~H--s~~d~a-~~r~i--P-n~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.- . +..+. ..-|.+ +.+++ + ++.-+.-.+..|+..+++.+++.++|++|
T Consensus 462 ~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~p~li 522 (539)
T TIGR03393 462 TVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEKVAAHERLSLI 522 (539)
T ss_pred EEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHHHhccCCeEEE
Confidence 21 1 11110 112332 22222 1 12467779999999999999999999999
No 290
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=39.66 E-value=1.5e+02 Score=27.07 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccCCcH--------HHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHH
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDK--------ETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~--------~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l 313 (360)
...+..+++.+.++|.+++++|++-+-.+|. ..+.+.++....+|++-- -..+|+...+..++
T Consensus 43 ~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TP-EYn~sipg~LKNai 113 (219)
T TIGR02690 43 RLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSP-ERHGAITGSQKDQI 113 (219)
T ss_pred HHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCC-ccccCcCHHHHHHH
Confidence 3445556666776799999999876532221 336667777777766632 23466655555433
No 291
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=38.97 E-value=2.4e+02 Score=29.39 Aligned_cols=111 Identities=10% Similarity=0.030 Sum_probs=63.3
Q ss_pred CCcEEechhH--HHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPLC--EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GIa--E~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|+..+-. =-..++.|.|.++.. -++++++ -.+ |++.+-| |-. +...+ +|+ .+|+...+++.-
T Consensus 411 p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i-~GDG~f~m~~~e-L~T-a~~~~------l~i-~ivV~NN~~yg~ 480 (572)
T PRK06456 411 PRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDL-DGDGSFLMTGTN-LAT-AVDEH------IPV-ISVIFDNRTLGL 480 (572)
T ss_pred CCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEE-EccchHhcchHH-HHH-HHHhC------CCe-EEEEEECCchHH
Confidence 7888875311 112345667766653 4566665 344 5444322 332 44434 466 555555554321
Q ss_pred --------CCCCC-----CCchHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HGGHY-----HSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~g~~-----Hs~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.++.. ...-|+ ++.+++ |..-+...++.|+..++.+++..++|++|
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 540 (572)
T PRK06456 481 VRQVQDLFFGKRIVGVDYGPSPDFVKLAEAF-GALGFNVTTYEDIEKSLKSAIKEDIPAVI 540 (572)
T ss_pred HHHHHHHhhCCCcccccCCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 11111 011243 344555 67778889999999999999999999998
No 292
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=38.89 E-value=59 Score=32.41 Aligned_cols=75 Identities=21% Similarity=0.231 Sum_probs=55.6
Q ss_pred EEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEE-eCCCcCCch--HHHHHHHHHHhc
Q 018167 243 LVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLIS-HEAPVTGGF--GAEISASILERC 317 (360)
Q Consensus 243 Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvv-Ee~~~~GGl--gs~v~~~l~~~~ 317 (360)
||++-..=+.+++.++.|+.+|++|+.+.+..=--+|.+.|.+.++....+|.+ --++.+|-+ =.+|++.+.+++
T Consensus 94 IIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~ 171 (386)
T COG1104 94 IITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERG 171 (386)
T ss_pred EEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcC
Confidence 566666677888999999888999999988876778889999999765555555 445566644 356677776654
No 293
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=37.95 E-value=2.1e+02 Score=26.04 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=45.5
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhcc
Q 018167 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCF 318 (360)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~ 318 (360)
.++.||--=+.+.. |+.+| |++.+=+.+.|+.+-+.+.++..+....+++++.++. . | =++|+..|.+.++
T Consensus 95 ~~v~iIPgiSS~q~---a~ARl---g~~~~~~~~islHgr~~~~l~~~~~~~~~~vil~~~~-~-~-P~~IA~~L~~~G~ 165 (210)
T COG2241 95 EEVEIIPGISSVQL---AAARL---GWPLQDTEVISLHGRPVELLRPLLENGRRLVILTPDD-F-G-PAEIAKLLTENGI 165 (210)
T ss_pred cceEEecChhHHHH---HHHHh---CCChHHeEEEEecCCCHHHHHHHHhCCceEEEeCCCC-C-C-HHHHHHHHHhCCC
Confidence 46777763233333 22333 6655555555666888888888887777788776653 2 2 4678999998875
No 294
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=37.16 E-value=23 Score=28.95 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=26.9
Q ss_pred eeCCcEEEEEechhH-HHHHHHHHHHHhcCCCeeEEEec
Q 018167 236 REGSDITLVGWGAQL-SIMEQACLDAEKEGISCELIDLK 273 (360)
Q Consensus 236 ~~G~dv~Iia~G~~~-~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (360)
.+.-|++||++|... ..--+..+.|++.||.+++.|.+
T Consensus 52 ~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 52 EPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred cCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 346789999999853 22334556788889999888644
No 295
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=36.98 E-value=24 Score=28.38 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=24.9
Q ss_pred eCCcEEEEEechhHHH-HHHHHHHHHhcCCCeeEEEecc
Q 018167 237 EGSDITLVGWGAQLSI-MEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~-al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
+.-|++||++|..... --+..+.|++.||.+++.|-+.
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~~ 90 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTPA 90 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HHH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHHH
Confidence 3679999999976432 3355667888899999887543
No 296
>PRK08114 cystathionine beta-lyase; Provisional
Probab=35.88 E-value=70 Score=31.98 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=19.1
Q ss_pred HHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 259 DAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 259 ~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
.|++.|+++..+| |.|.+.+.+.++...++|++|-
T Consensus 121 ~l~~~Gi~v~~vd-----~~d~~~l~~~l~~~TrlV~~Et 155 (395)
T PRK08114 121 ILSKLGVTTTWFD-----PLIGADIAKLIQPNTKVVFLES 155 (395)
T ss_pred HHHhcCcEEEEEC-----CCCHHHHHHhcCCCceEEEEEC
Confidence 3444566666655 2455556555554445666664
No 297
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=35.67 E-value=1.6e+02 Score=26.12 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccCC----------cHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHH
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLIPW----------DKETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~----------d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l 313 (360)
...+..+++.|++.|.+++++|+..+.+- +.+.+.+.++..+.+|++--- ..|++...+..++
T Consensus 17 ~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~-Y~~s~pg~LKn~i 89 (191)
T PRK10569 17 SALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPV-YKASFSGALKTLL 89 (191)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCc-cCCCCCHHHHHHH
Confidence 34445556678888999999999875441 223466777778888777443 3566666665554
No 298
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=35.56 E-value=3.3e+02 Score=24.45 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=24.5
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCC--CeeEE
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAEKEGI--SCELI 270 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi--~v~Vi 270 (360)
+..+++||.|+.+...+..++.+.+++- ++.++
T Consensus 109 ~~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l~ 143 (238)
T cd06211 109 QRPIIFIAGGSGLSSPRSMILDLLERGDTRKITLF 143 (238)
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEEE
Confidence 3689999999988888887777766554 45544
No 299
>PRK09004 FMN-binding protein MioC; Provisional
Probab=35.22 E-value=1.6e+02 Score=24.79 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=31.5
Q ss_pred EEEechhHHHHHHHHHHH----HhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCC
Q 018167 243 LVGWGAQLSIMEQACLDA----EKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTG 303 (360)
Q Consensus 243 Iia~G~~~~~al~Aa~~L----~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~G 303 (360)
.|-||+.+..+.+.|+.| .+.|.++.++|+.. . +.+.+...++++--.+-.|
T Consensus 5 ~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~-----~----~~l~~~~~li~~~sT~G~G 60 (146)
T PRK09004 5 TLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL-----L----DDLSASGLWLIVTSTHGAG 60 (146)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC-----H----HHhccCCeEEEEECCCCCC
Confidence 345788777777776655 45689999887633 1 2234556666665433334
No 300
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=35.15 E-value=3.5e+02 Score=24.63 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=39.6
Q ss_pred ccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCccccccccC--C----CCHH
Q 018167 275 LIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFY--M----PTKN 348 (360)
Q Consensus 275 ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~~~~e~~g--l----~~~~ 348 (360)
+-+++.+.+.+.+.+++-++. .+...|++..+.++++- ..|+.. .......+..++.. + -+.+
T Consensus 264 ~g~~~~~~~~~~~~~ad~~i~---~~~~~~~~~~~~Ea~~~------G~pvI~--~~~~~~~~~~~~~~~g~~~~~~~~~ 332 (377)
T cd03798 264 LGAVPHEEVPAYYAAADVFVL---PSLREGFGLVLLEAMAC------GLPVVA--TDVGGIPEIITDGENGLLVPPGDPE 332 (377)
T ss_pred eCCCCHHHHHHHHHhcCeeec---chhhccCChHHHHHHhc------CCCEEE--ecCCChHHHhcCCcceeEECCCCHH
Confidence 345666667777776664332 22236777778887753 345532 22222222222111 1 2778
Q ss_pred HHHHHHHHhhh
Q 018167 349 KILDAIKSTVN 359 (360)
Q Consensus 349 ~I~~~i~~~l~ 359 (360)
++++++.+++.
T Consensus 333 ~l~~~i~~~~~ 343 (377)
T cd03798 333 ALAEAILRLLA 343 (377)
T ss_pred HHHHHHHHHhc
Confidence 88888888764
No 301
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=35.08 E-value=4e+02 Score=26.08 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=48.3
Q ss_pred eeCCcEEEEEechh-HHHHHHHHHHHHhcCC-CeeEEEeccccCCcHHH-----HHHHHhcCCeEEEEeCCCc
Q 018167 236 REGSDITLVGWGAQ-LSIMEQACLDAEKEGI-SCELIDLKTLIPWDKET-----VEASVRKTGRLLISHEAPV 301 (360)
Q Consensus 236 ~~G~dv~Iia~G~~-~~~al~Aa~~L~~~Gi-~v~Vi~~~~ikP~d~~~-----l~~~~~~~~~ivvvEe~~~ 301 (360)
+.++ =+|+++|.. ..+..+|.+.++++|. ++.++++.+..|-+.+. +.+........|-+-+|+.
T Consensus 145 ~~~k-PiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~ 216 (347)
T COG2089 145 KKGK-PIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTL 216 (347)
T ss_pred hcCC-CEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCcc
Confidence 3455 558899965 5788899999998875 58888999999988764 3444455677788888863
No 302
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=34.85 E-value=3.7e+02 Score=26.37 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=25.5
Q ss_pred EEEecCCCCcc-ccccccCCCCHHHHHHHHHHhhh
Q 018167 326 ARVCGLDTPFP-LVFEPFYMPTKNKILDAIKSTVN 359 (360)
Q Consensus 326 ~~i~~~~~~~~-~~~e~~gl~~~~~I~~~i~~~l~ 359 (360)
.|||...+..+ .++++||-|+++.+++.+.+.++
T Consensus 124 IRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~ 158 (346)
T TIGR00612 124 MRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAA 158 (346)
T ss_pred EEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 47865555543 56899998899999999887553
No 303
>PRK10824 glutaredoxin-4; Provisional
Probab=34.78 E-value=1.3e+02 Score=24.63 Aligned_cols=67 Identities=21% Similarity=0.201 Sum_probs=43.7
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhc-----CCeEEEEeCCCcCCchHHH
Q 018167 238 GSDITLVGWGA----QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-----TGRLLISHEAPVTGGFGAE 308 (360)
Q Consensus 238 G~dv~Iia~G~----~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~-----~~~ivvvEe~~~~GGlgs~ 308 (360)
.++|+|++-|+ .-..+.+|.+.|.+.|++..++|+-. |.+ +++.+++ |-.-|.|.. ...||....
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~----d~~-~~~~l~~~sg~~TVPQIFI~G-~~IGG~ddl 87 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ----NPD-IRAELPKYANWPTFPQLWVDG-ELVGGCDIV 87 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC----CHH-HHHHHHHHhCCCCCCeEEECC-EEEcChHHH
Confidence 46788888883 56778888889999999999998854 222 3333332 322355544 346887664
Q ss_pred HH
Q 018167 309 IS 310 (360)
Q Consensus 309 v~ 310 (360)
.+
T Consensus 88 ~~ 89 (115)
T PRK10824 88 IE 89 (115)
T ss_pred HH
Confidence 44
No 304
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=34.40 E-value=81 Score=23.01 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhc----CCeEEEEeCCCcCCchHHHHH
Q 018167 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK----TGRLLISHEAPVTGGFGAEIS 310 (360)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~----~~~ivvvEe~~~~GGlgs~v~ 310 (360)
+.-..|.+|.+.|++.|++.+.+|+.. |.+...+..+. +-..|++.. ...||+.+...
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~----~~~~~~~~~~~~g~~~vP~i~i~g-~~igg~~~~~~ 68 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDG----DPALRDEMMQRSGRRTVPQIFIGD-VHVGGCDDLYA 68 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecC----CHHHHHHHHHHhCCCCcCEEEECC-EEEcChHHHHH
Confidence 345678888889999999999999875 22333232222 234566654 46798877543
No 305
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=34.33 E-value=1.2e+02 Score=30.46 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=36.6
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHh-cCCeEEEEeC
Q 018167 239 SDITLVGWGA-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHE 298 (360)
Q Consensus 239 ~dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~-~~~~ivvvEe 298 (360)
.|+.|+..+. ....|++.++.|+++|+.+++ |... +++ .+.+..+-+ +...++++-+
T Consensus 326 ~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~vei-d~~~-~~l-~k~~k~A~~~~~~~viiiG~ 384 (430)
T CHL00201 326 IDVYIATQGLKAQKKGWEIIQFLEKQNIKFEL-DLSS-SNF-HKQIKQAGKKRAKACIILGD 384 (430)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEE-eeCC-CCH-HHHHHHHHHcCCCEEEEEec
Confidence 4677877665 457788999999999999876 4433 334 233443332 2356777755
No 306
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=34.10 E-value=2.1e+02 Score=27.45 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=8.0
Q ss_pred HHHHHHHHhcCCeEEEEeC
Q 018167 280 KETVEASVRKTGRLLISHE 298 (360)
Q Consensus 280 ~~~l~~~~~~~~~ivvvEe 298 (360)
.+.|.+.+++++..+++|.
T Consensus 148 i~~I~~l~~~~g~~livD~ 166 (363)
T TIGR02326 148 IEAVAKLAHRHGKVTIVDA 166 (363)
T ss_pred HHHHHHHHHHcCCEEEEEc
Confidence 3444444444444444443
No 307
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=33.92 E-value=87 Score=25.98 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcC
Q 018167 248 AQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT 290 (360)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~ 290 (360)
..-..|.+|.+.|++.||+.+.+|+.. .|.+.+.+.+.++.+
T Consensus 8 ~~C~~C~ka~~~L~~~gi~~~~idi~~-~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 8 PSCTSCRKAKAWLEEHDIPFTERNIFS-SPLTIDEIKQILRMT 49 (131)
T ss_pred CCChHHHHHHHHHHHcCCCcEEeeccC-ChhhHHHHHHHHHHh
Confidence 345678888899999999999999865 788888877777654
No 308
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=33.82 E-value=56 Score=24.12 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=23.9
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc
Q 018167 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
++||+.|. .++|.|..|.+.|.++.+|+..-
T Consensus 2 vvViGgG~---ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 2 VVVIGGGF---IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEESSSH---HHHHHHHHHHHTTSEEEEEESSS
T ss_pred EEEECcCH---HHHHHHHHHHHhCcEEEEEeccc
Confidence 67777776 56677788888899999997654
No 309
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=33.49 E-value=52 Score=31.45 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=24.4
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCCeeEEEe
Q 018167 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (360)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (360)
+++||+.|.. -+.||..|+++|++++|++-
T Consensus 3 siaIVGaGiA---Gl~aA~~L~~aG~~vtV~eK 32 (331)
T COG3380 3 SIAIVGAGIA---GLAAAYALREAGREVTVFEK 32 (331)
T ss_pred cEEEEccchH---HHHHHHHHHhcCcEEEEEEc
Confidence 6899999974 34567789999999999974
No 310
>PRK05569 flavodoxin; Provisional
Probab=33.44 E-value=98 Score=25.45 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=19.8
Q ss_pred echhHHHHHHHHHHHHhcCCCeeEEEeccc
Q 018167 246 WGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (360)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~i 275 (360)
+|++-..|...++.+++.|.+++++++...
T Consensus 12 tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~ 41 (141)
T PRK05569 12 GGNVEVLANTIADGAKEAGAEVTIKHVADA 41 (141)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEECCcC
Confidence 445555566666667667888888776554
No 311
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=33.31 E-value=1.7e+02 Score=28.47 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCC-C-chHH-HHHcCCCCcEEEee---CCHHHHHHHHHH
Q 018167 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-S-QSPE-AFFCHVPGLKVVIP---RSPRQAKGLLLS 196 (360)
Q Consensus 123 ~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~H-s-~~d~-a~~r~iPn~~V~~P---~d~~e~~~~l~~ 196 (360)
..++|-+. .++..++. ++ +++.+..+. ..+|.+. . .+|+ .-+++. |+.|+.- .|.+++..++..
T Consensus 158 G~~~EA~~-~A~~~~L~-----nL--i~i~D~N~~-q~dg~~~~~~~~~~~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~ 227 (332)
T PF00456_consen 158 GSVWEAAS-LAGHYKLD-----NL--IVIYDSNGI-QIDGPTDIVFSEDIAKKFEAF-GWNVIEVCDGHDVEAIYAAIEE 227 (332)
T ss_dssp HHHHHHHH-HHHHTT-T-----TE--EEEEEEESE-ETTEEGGGTHHSHHHHHHHHT-T-EEEEEEETTBHHHHHHHHHH
T ss_pred hhhHHHHH-HHHHhCCC-----CE--EEEEecCCc-ccCCCcccccchHHHHHHHHh-hhhhcccccCcHHHHHHHHHHH
Confidence 35677665 46655532 22 334454332 3344443 2 3444 446665 8888887 567777777777
Q ss_pred hHhC-CCCEEEecccc
Q 018167 197 CIRD-PNPVVFFEPKW 211 (360)
Q Consensus 197 a~~~-~~P~~i~~~k~ 211 (360)
|-.. ++|++|.....
T Consensus 228 a~~~~~kP~~Ii~~Tv 243 (332)
T PF00456_consen 228 AKASKGKPTVIIARTV 243 (332)
T ss_dssp HHHSTSS-EEEEEEE-
T ss_pred HHhcCCCCceeecceE
Confidence 7665 89999965543
No 312
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.30 E-value=53 Score=31.84 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcC
Q 018167 43 YSAINQALHIALETDPRAYVFGE 65 (360)
Q Consensus 43 r~a~~~~L~~l~~~~~~vv~i~~ 65 (360)
...|.++|...+++||||+++++
T Consensus 184 T~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 184 TLSFANALRAALREDPDVILVGE 206 (353)
T ss_pred HHHHHHHHHHHhhcCCCEEEEec
Confidence 35678888888899999999875
No 313
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=33.01 E-value=2.1e+02 Score=26.46 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=43.8
Q ss_pred CCCceEEee-eCCcEEEEEechhHHHHHHHHHHHHhcC--CCeeEEE-eccc-cCCcHHHHHHHHhcCCeEEEEeCCC
Q 018167 228 PLSEAEVIR-EGSDITLVGWGAQLSIMEQACLDAEKEG--ISCELID-LKTL-IPWDKETVEASVRKTGRLLISHEAP 300 (360)
Q Consensus 228 ~~Gk~~vl~-~G~dv~Iia~G~~~~~al~Aa~~L~~~G--i~v~Vi~-~~~i-kP~d~~~l~~~~~~~~~ivvvEe~~ 300 (360)
|+|++.... .++.+++|+-|..+...+..++++.++| .++.++- .++= ..+..+.+.+...+ .-..++++++
T Consensus 96 P~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~ 172 (252)
T COG0543 96 PLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGW 172 (252)
T ss_pred CCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCC
Confidence 456555544 3455999999999999999999998888 4554443 2221 12333444444433 3455666554
No 314
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=32.92 E-value=1.1e+02 Score=26.76 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=43.0
Q ss_pred chhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHH
Q 018167 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILE 315 (360)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~ 315 (360)
|++-..|...|..|++.|+.|++.|+..+.-++ +..+.+||+ =-....|-+-+.+.+++..
T Consensus 12 GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~-------l~~ydavVI-gAsI~~~h~~~~~~~Fv~k 72 (175)
T COG4635 12 GQTRKIAEYIASHLRESGIQVDIQDLHAVEEPA-------LEDYDAVVI-GASIRYGHFHEAVQSFVKK 72 (175)
T ss_pred CcHHHHHHHHHHHhhhcCCeeeeeehhhhhccC-------hhhCceEEE-ecchhhhhhHHHHHHHHHH
Confidence 556677778888899999999999988876433 334566554 3444567777777776655
No 315
>PRK05568 flavodoxin; Provisional
Probab=32.80 E-value=99 Score=25.42 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHHHhcCCCeeEEEecccc
Q 018167 247 GAQLSIMEQACLDAEKEGISCELIDLKTLI 276 (360)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ik 276 (360)
|++-..|...++.+++.|++++++++....
T Consensus 13 GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~ 42 (142)
T PRK05568 13 GNTEAMANLIAEGAKENGAEVKLLNVSEAS 42 (142)
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 444444555555666678999999988754
No 316
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.77 E-value=2.7e+02 Score=22.78 Aligned_cols=76 Identities=12% Similarity=0.074 Sum_probs=46.5
Q ss_pred cEEEEEechhHHHHHHHHHHH----HhcCCCeeEEEecc--c-----------cCCcHHHHHHHHhc-CCeEEEEeCCCc
Q 018167 240 DITLVGWGAQLSIMEQACLDA----EKEGISCELIDLKT--L-----------IPWDKETVEASVRK-TGRLLISHEAPV 301 (360)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L----~~~Gi~v~Vi~~~~--i-----------kP~d~~~l~~~~~~-~~~ivvvEe~~~ 301 (360)
-+++++.|+....+.+..+.+ ++.--+..|--..+ + .|-..+.|.+.... +++|+|+==|..
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~ 81 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHII 81 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeE
Confidence 378999999887666554444 33322223322222 1 57777888777664 678888877776
Q ss_pred CCchHHHHHHHHHH
Q 018167 302 TGGFGAEISASILE 315 (360)
Q Consensus 302 ~GGlgs~v~~~l~~ 315 (360)
.|.-...+.+.+.+
T Consensus 82 ~G~e~~di~~~v~~ 95 (127)
T cd03412 82 PGEEYEKLKREVDA 95 (127)
T ss_pred CcHHHHHHHHHHHH
Confidence 66666666665544
No 317
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=32.65 E-value=1.8e+02 Score=23.44 Aligned_cols=31 Identities=10% Similarity=0.191 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHHhcCCCeeEEEeccccC
Q 018167 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIP 277 (360)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP 277 (360)
|++-..|...++.|.+.|+++.++++....|
T Consensus 10 GnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~ 40 (140)
T TIGR01753 10 GNTEEMANIIAEGLKEAGAEVDLLEVADADA 40 (140)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEEEcccCCH
Confidence 3344444445555666789999998876543
No 318
>PLN02573 pyruvate decarboxylase
Probab=31.87 E-value=4e+02 Score=27.89 Aligned_cols=110 Identities=11% Similarity=0.058 Sum_probs=60.1
Q ss_pred CCcEEechhHHHH----HHHHHHHHhcC-CCeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCC
Q 018167 85 KSRVFNTPLCEQG----IVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (360)
Q Consensus 85 p~r~i~~GIaE~~----~vg~AaGlA~~-G~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~ 157 (360)
|.+|+..+- .+ .+..|.|.++. .-++++.+ -.+ |.+.+ ..|-. ++..+ +|+ .+|+...+++
T Consensus 418 ~~~~~~~~~--~gsmG~glpaaiGa~lA~p~r~vv~i-~GDG~f~m~~-~EL~T-a~r~~------lpv-v~vV~NN~~y 485 (578)
T PLN02573 418 GCGYEFQMQ--YGSIGWSVGATLGYAQAAPDKRVIAC-IGDGSFQVTA-QDVST-MIRCG------QKS-IIFLINNGGY 485 (578)
T ss_pred CCeEEeecc--hhhhhhhhhHHHHHHHhCCCCceEEE-EeccHHHhHH-HHHHH-HHHcC------CCC-EEEEEeCCce
Confidence 456666542 23 34455565555 23555554 444 54444 23432 45444 466 5555555443
Q ss_pred CC----CCCC--CCCchHH-HHHcCCC---C-cEEEeeCCHHHHHHHHHHhHh--CCCCEEE
Q 018167 158 VG----HGGH--YHSQSPE-AFFCHVP---G-LKVVIPRSPRQAKGLLLSCIR--DPNPVVF 206 (360)
Q Consensus 158 ~g----~~g~--~Hs~~d~-a~~r~iP---n-~~V~~P~d~~e~~~~l~~a~~--~~~P~~i 206 (360)
.- .+.. ....-|+ ++.+++- | ..-..-.++.|+..++++++. .++|++|
T Consensus 486 g~~~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~li 547 (578)
T PLN02573 486 TIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLCFI 547 (578)
T ss_pred eEEEeecccCccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEE
Confidence 21 1111 0011233 3444542 3 777888999999999999984 6899998
No 319
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=31.72 E-value=2e+02 Score=23.37 Aligned_cols=65 Identities=11% Similarity=-0.045 Sum_probs=42.9
Q ss_pred EEEEechhHHH-----HHHHHHHHHhcCCCeeEEEec-cccCCcHHHHHHHHhcC-CeEEEEeCCCcCCchHH
Q 018167 242 TLVGWGAQLSI-----MEQACLDAEKEGISCELIDLK-TLIPWDKETVEASVRKT-GRLLISHEAPVTGGFGA 307 (360)
Q Consensus 242 ~Iia~G~~~~~-----al~Aa~~L~~~Gi~v~Vi~~~-~ikP~d~~~l~~~~~~~-~~ivvvEe~~~~GGlgs 307 (360)
.++++|..... ..+..+.|.+.|...=+|... .+..+|.+.+ +.+.+. =.++.+..+....-+-+
T Consensus 45 lvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i-~~A~~~~lPli~ip~~~~f~~I~~ 116 (123)
T PF07905_consen 45 LVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEII-ELADELGLPLIEIPWEVPFSDITR 116 (123)
T ss_pred EEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHH-HHHHHcCCCEEEeCCCCCHHHHHH
Confidence 45676765433 566777888889888888665 8889997766 555554 46777766654333333
No 320
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=31.47 E-value=2e+02 Score=27.42 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=54.7
Q ss_pred HHHHHHHhcC----CCeeEEEecCcccH--H-HHHHHHHHHHHhcccccCCCccccceEEEcCCC-CCCC--C-CCCCCc
Q 018167 99 VGFAIGLAAM----GNRAIAEIQFADYI--F-PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG-AVGH--G-GHYHSQ 167 (360)
Q Consensus 99 vg~AaGlA~~----G~~p~~~~~f~~F~--~-ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g-~~g~--~-g~~Hs~ 167 (360)
+.+|+|.|++ |.+.++-..|.+=. + ..+|- .|.++..+ +|+ .+|+..... .... . -+...+
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Ea-lN~A~~~~------lPv-ifvveNN~~aist~~~~~~~~~~~ 178 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEA-LNLAALWK------LPV-IFVVENNQYAISTPTEEQTASPDI 178 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHH-HHHHHHTT------TSE-EEEEEEESEETTEEHHHHCSSSTS
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHH-HHHHhhcc------CCe-EEEEecCCcccccCccccccccch
Confidence 4555566653 54444433366643 2 33443 44567666 355 344443321 1111 1 111125
Q ss_pred hHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC----CCCEEE
Q 018167 168 SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVF 206 (360)
Q Consensus 168 ~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~----~~P~~i 206 (360)
.|.+..-.+|+++| .=.|+.++..+++.|+++ ++|++|
T Consensus 179 ~~~a~~~gip~~~V-DG~D~~av~~a~~~A~~~~R~g~gP~li 220 (300)
T PF00676_consen 179 ADRAKGYGIPGIRV-DGNDVEAVYEAAKEAVEYARAGKGPVLI 220 (300)
T ss_dssp GGGGGGTTSEEEEE-ETTSHHHHHHHHHHHHHHHHTTT--EEE
T ss_pred hhhhhccCCcEEEE-CCEeHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 66666668888854 778999999999988874 799998
No 321
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=31.08 E-value=1e+02 Score=26.04 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=34.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEE
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLIS 296 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvv 296 (360)
+|++++|++-+..+...+ +..|.++|..+.+.+-++- .+.+.+++.+-|++.
T Consensus 27 ~gk~v~VvGrs~~vG~pl--a~lL~~~gatV~~~~~~t~------~l~~~v~~ADIVvsA 78 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPL--QCLLQRDGATVYSCDWKTI------QLQSKVHDADVVVVG 78 (140)
T ss_pred CCCEEEEECCCchHHHHH--HHHHHHCCCEEEEeCCCCc------CHHHHHhhCCEEEEe
Confidence 467788877777666554 5567778888888876652 344566666644443
No 322
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=30.99 E-value=85 Score=26.76 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=24.8
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhc-CCCeeE
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAEKE-GISCEL 269 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~V 269 (360)
...|+|.++|.....|+..+..++++ ++.++|
T Consensus 61 ~~~V~v~gtGkAIeKal~la~~Fq~~~~~~V~V 93 (144)
T PF12328_consen 61 SEEVTVKGTGKAIEKALSLALWFQRKKGYKVEV 93 (144)
T ss_dssp -SEEEEEEEGGGHHHHHHHHHHHHHTT---EEE
T ss_pred ccEEEEEeccHHHHHHHHHHHHHhhcCCeEEEE
Confidence 46899999999999999999999766 676654
No 323
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=30.97 E-value=28 Score=28.02 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=25.5
Q ss_pred CcEEEEEechhH-HHHHHHHHHHHhcCCCeeEEEec
Q 018167 239 SDITLVGWGAQL-SIMEQACLDAEKEGISCELIDLK 273 (360)
Q Consensus 239 ~dv~Iia~G~~~-~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (360)
-|++||+||... ..--+..+.|++.||.+++.|-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 689999999754 22334556788889999888754
No 324
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=30.95 E-value=1.1e+02 Score=27.62 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=37.9
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHH
Q 018167 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEAS 286 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~ 286 (360)
+++++.|+.-.-++-||+.|...|++|+|+-+..-++...+..+..
T Consensus 53 ~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~ 98 (203)
T COG0062 53 LVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARAN 98 (203)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHH
Confidence 4566778889999999999999999999999888787777765444
No 325
>PRK12321 cobN cobaltochelatase subunit CobN; Reviewed
Probab=30.94 E-value=4.1e+02 Score=30.45 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=40.4
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCC-CeeEEEeccc-cCCcHHHHHHHHhcCCeEEEEeCCCcCCchH
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGI-SCELIDLKTL-IPWDKETVEASVRKTGRLLISHEAPVTGGFG 306 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi-~v~Vi~~~~i-kP~d~~~l~~~~~~~~~ivvvEe~~~~GGlg 306 (360)
...+++++++...--.++..+-.....|+ ++.+.++..| .|...+...+.+....++|++.-+ ||-.
T Consensus 23 ~pA~~v~ls~~ds~l~~l~~a~~~~~~~~p~lr~~~~~~l~~~~~~d~~~~~~~~~a~~v~v~ll---Gg~~ 91 (1100)
T PRK12321 23 SPADLVVLSFSDSDLGALAAAWAAAGGGLPSLRLANLAALRHPMSVDLYVEQVLAGAKAVLIRLL---GGLD 91 (1100)
T ss_pred CCcCEEEEEcCcchHHHHHHHHHhcccCCcceeecChhhcCCHHHHHHHHHHHhccCcEEEEEcC---CCch
Confidence 34677777777655444444332112356 7778877777 455556666666666678888543 5544
No 326
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit.
Probab=30.86 E-value=4.6e+02 Score=30.14 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=37.1
Q ss_pred CCcEEEEEechhHHHHH-HHHHHHHhcCC-CeeEEEeccc-cCCcHHHHHHHHhcCCeEEEEeC
Q 018167 238 GSDITLVGWGAQLSIME-QACLDAEKEGI-SCELIDLKTL-IPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al-~Aa~~L~~~Gi-~v~Vi~~~~i-kP~d~~~l~~~~~~~~~ivvvEe 298 (360)
-.+++++++...--.++ +|.+.+. .|+ ++.+.++..| .|...+...+.+....++|+|.-
T Consensus 24 pa~~v~ls~~dsdl~~l~~a~~~~~-~~~~~lr~~~~~~l~~~~~~d~~~~~~~~~a~~v~v~~ 86 (1122)
T TIGR02257 24 PADIVFLSSADSDLALLAAAWKALP-DDLPSLRLANLDNLQHPASVDLYVDSTARKAKIIVVRL 86 (1122)
T ss_pred CccEEEEEeccchHHHHHHHHHHhh-cCCcceEecChhhcCCHHHHHHHHHHHhccCcEEEEEC
Confidence 45777777776544444 3434443 466 7788888777 44444666666666667888864
No 327
>PRK10329 glutaredoxin-like protein; Provisional
Probab=30.82 E-value=2.1e+02 Score=21.38 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=25.3
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc
Q 018167 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
++|.+.= .-..|..+.+.|++.||+.+.+|+..
T Consensus 3 v~lYt~~-~Cp~C~~ak~~L~~~gI~~~~idi~~ 35 (81)
T PRK10329 3 ITIYTRN-DCVQCHATKRAMESRGFDFEMINVDR 35 (81)
T ss_pred EEEEeCC-CCHhHHHHHHHHHHCCCceEEEECCC
Confidence 4555543 33778888889999999999999986
No 328
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=30.60 E-value=71 Score=31.92 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=37.4
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhcCCCeeEEE----eccccCCcHHHH
Q 018167 238 GSDITLVGWGAQL-SIMEQACLDAEKEGISCELID----LKTLIPWDKETV 283 (360)
Q Consensus 238 G~dv~Iia~G~~~-~~al~Aa~~L~~~Gi~v~Vi~----~~~ikP~d~~~l 283 (360)
|+++++..+|+.. +.+.+.+..|.+.|-++.|+= .+++.|++.+++
T Consensus 4 ~k~ill~v~gsiaayk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p~~~~~~ 54 (392)
T COG0452 4 GKRILLGVTGSIAAYKSVELVRLLRRSGAEVRVVMTESARKFITPLTFQAL 54 (392)
T ss_pred CceEEEEecCchhhhhHHHHHHHHhhCCCeeEEEcchhhhhhcCcccHHHh
Confidence 4578887788765 889999999999999999994 556888887765
No 329
>PLN02463 lycopene beta cyclase
Probab=30.59 E-value=54 Score=33.31 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=26.6
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccC
Q 018167 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIP 277 (360)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP 277 (360)
-|++||+.|.. .+.+|..|.+.|++|.||+.....+
T Consensus 29 ~DVvIVGaGpA---GLalA~~La~~Gl~V~liE~~~~~~ 64 (447)
T PLN02463 29 VDLVVVGGGPA---GLAVAQQVSEAGLSVCCIDPSPLSI 64 (447)
T ss_pred ceEEEECCCHH---HHHHHHHHHHCCCeEEEeccCccch
Confidence 49999999983 2334556777899999999865444
No 330
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=30.54 E-value=3.1e+02 Score=28.29 Aligned_cols=163 Identities=19% Similarity=0.119 Sum_probs=79.3
Q ss_pred chhHHHHHHHHHHHHhcCC--CeeEEEecCcccHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCC---CCCCCCCC
Q 018167 91 TPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA---VGHGGHYH 165 (360)
Q Consensus 91 ~GIaE~~~vg~AaGlA~~G--~~p~~~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~---~g~~g~~H 165 (360)
-|=.||.|.-.|.+.|..- .|-+.++ .+ +....--+...+++.. .+.+|+ .+. |+-. -..|+.-+
T Consensus 61 qg~NEQgMAhaAiayaKq~~Rrr~~A~t-sS--iGPGA~NmvTaAalA~---~NrlPv---Lll-PgDvfA~R~PDPVLQ 130 (617)
T COG3962 61 QGHNEQGMAHAAIAYAKQHRRRRIYAVT-SS--IGPGAANMVTAAALAH---VNRLPV---LLL-PGDVFATRQPDPVLQ 130 (617)
T ss_pred hcccHhHHHHHHHHHHHHHhhceeeEEe-cc--cCCcHHHHHHHHHHHH---hhcCce---Eee-ccchhcccCCChHHH
Confidence 4668999999999999974 3344442 22 2222222333455332 222444 322 3221 23344434
Q ss_pred CchHHHHHcCCCCcEEEee--------CCHHHHHHHHHHhHhC------CCCEEEeccccccccCcccCCCCCcccCCCc
Q 018167 166 SQSPEAFFCHVPGLKVVIP--------RSPRQAKGLLLSCIRD------PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSE 231 (360)
Q Consensus 166 s~~d~a~~r~iPn~~V~~P--------~d~~e~~~~l~~a~~~------~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk 231 (360)
++||..-..---| .-|.| .-|+++..++..|++- -||+-+..|....-. .-+.|.. -|..--
T Consensus 131 Q~E~~~d~~it~N-DcfrPVSRYfDRItRPEQl~sal~rA~~VmTDPA~~GpvTl~l~QDVq~e-A~Dyp~~--FF~~rv 206 (617)
T COG3962 131 QLEQFGDGTITTN-DCFRPVSRYFDRITRPEQLMSALPRAMRVMTDPADCGPVTLALCQDVQAE-AYDYPES--FFEKRV 206 (617)
T ss_pred hhhccccCceecc-cccccHHHHhhhcCCHHHHHHHHHHHHHHhCChhhcCceEEEechhhhhh-hcCCcHH--hhhhhh
Confidence 4444321110000 11222 4689999999988872 589888544321100 0011110 111111
Q ss_pred eEE----------------eee-CCcEEEEEechhHHHHHHHHHHHHhc-CCCe
Q 018167 232 AEV----------------IRE-GSDITLVGWGAQLSIMEQACLDAEKE-GISC 267 (360)
Q Consensus 232 ~~v----------------l~~-G~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v 267 (360)
|++ +|. .+-++|.+=|..+..|.++...+.+. ||.+
T Consensus 207 ~~~rR~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv 260 (617)
T COG3962 207 WRIRRPPPDERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPV 260 (617)
T ss_pred hhccCCCCCHHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHHhcCCce
Confidence 222 222 34466666666678888888888654 6543
No 331
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=29.76 E-value=1.5e+02 Score=21.26 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCC
Q 018167 255 QACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (360)
Q Consensus 255 ~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~ 299 (360)
...+.|+++|++++.++- |++ .+. .+...+|+++..
T Consensus 9 a~~~~L~~~g~~v~~~~~----~~~--~l~---~~~~tll~i~~~ 44 (70)
T PF14258_consen 9 ALYQLLEEQGVKVERWRK----PYE--ALE---ADDGTLLVIGPD 44 (70)
T ss_pred HHHHHHHHCCCeeEEecc----cHH--HhC---CCCCEEEEEeCC
Confidence 345678888888866543 433 332 144566777665
No 332
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=29.69 E-value=2.4e+02 Score=24.19 Aligned_cols=64 Identities=8% Similarity=0.248 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHhcCCCeeEEEeccccC--C--------cHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHH
Q 018167 249 QLSIMEQACLDAEKEGISCELIDLKTLIP--W--------DKETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (360)
Q Consensus 249 ~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP--~--------d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l 313 (360)
....+..+++.+++.|.+++++|++.+.. + +.+.+.+.+...+.+|++--- ..+++.+.+..++
T Consensus 15 t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~-Y~~sip~~LK~~i 88 (171)
T TIGR03567 15 SSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPV-YKASYSGVLKALL 88 (171)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCc-ccCCCCHHHHHHH
Confidence 34455556667777799999999876422 1 123466677777877776432 3577777666655
No 333
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=29.54 E-value=4.3e+02 Score=26.00 Aligned_cols=112 Identities=17% Similarity=0.217 Sum_probs=63.5
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCCEEEeccccccccCcccCCCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHH
Q 018167 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLD 259 (360)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~~~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~ 259 (360)
-|++-|+.+-..++-..|-...-|..|..|+.....+. +. +..=|.+ ++=+|.....+.+++++
T Consensus 76 gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv------~a--------~r~~Gae--Vil~g~~~dda~~~a~~ 139 (347)
T COG1171 76 GVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKV------DA--------TRGYGAE--VILHGDNFDDAYAAAEE 139 (347)
T ss_pred ceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHH------HH--------HHhcCCE--EEEECCCHHHHHHHHHH
Confidence 46777777767666666666667777755553211110 00 1111333 44467778888888888
Q ss_pred HHhc-CCCeeEEEeccccCCcHHHH--------HHHHhcCC---eEEEEeCCCcCCchHHHHHHHHHHh
Q 018167 260 AEKE-GISCELIDLKTLIPWDKETV--------EASVRKTG---RLLISHEAPVTGGFGAEISASILER 316 (360)
Q Consensus 260 L~~~-Gi~v~Vi~~~~ikP~d~~~l--------~~~~~~~~---~ivvvEe~~~~GGlgs~v~~~l~~~ 316 (360)
|.++ | +..|.|||...+ .|.+..-. ..|+|-=+ -|||-+-|+.++...
T Consensus 140 ~a~~~G-------~~~i~pfD~p~viAGQGTi~lEileq~~~~~d~v~vpvG--GGGLisGia~~~k~~ 199 (347)
T COG1171 140 LAEEEG-------LTFVPPFDDPDVIAGQGTIALEILEQLPDLPDAVFVPVG--GGGLISGIATALKAL 199 (347)
T ss_pred HHHHcC-------CEEeCCCCCcceeecccHHHHHHHHhccccCCEEEEecC--ccHHHHHHHHHHHHh
Confidence 8654 5 457788876421 23333322 23444333 378888888777653
No 334
>PRK10537 voltage-gated potassium channel; Provisional
Probab=29.45 E-value=1.5e+02 Score=29.69 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=36.5
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc-------------ccCCcHHHHHHH-HhcCCeEEEE
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT-------------LIPWDKETVEAS-VRKTGRLLIS 296 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~-------------ikP~d~~~l~~~-~~~~~~ivvv 296 (360)
.+.++|+++|..... ++++|+++|+++.||+... =.|-|++.|++. +++.+.+++.
T Consensus 240 k~HvII~G~g~lg~~---v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAIN---TYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHH---HHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEc
Confidence 357889999986554 5667888899999987431 133455555443 4455666554
No 335
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=29.39 E-value=4.7e+02 Score=24.30 Aligned_cols=72 Identities=15% Similarity=0.314 Sum_probs=39.6
Q ss_pred CCcEEEEEechh-HHHHHHHHHHHHhcCCCe-eEEEecc--ccCCcHHHHHHHHh-cCCeEEEEeCCCcCCchHHHHHHH
Q 018167 238 GSDITLVGWGAQ-LSIMEQACLDAEKEGISC-ELIDLKT--LIPWDKETVEASVR-KTGRLLISHEAPVTGGFGAEISAS 312 (360)
Q Consensus 238 G~dv~Iia~G~~-~~~al~Aa~~L~~~Gi~v-~Vi~~~~--ikP~d~~~l~~~~~-~~~~ivvvEe~~~~GGlgs~v~~~ 312 (360)
+..+-|++.|+. +.-|.||+..++..|+++ .++|+-- |+-+= ..+.+... ..+.+|++ -+ ..|-|-+-|+..
T Consensus 117 ~g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl-~~l~r~~~~~~~~lIVv-AG-MEGaLPsvvagL 193 (254)
T COG1691 117 GGKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLL-SALKRLKIEDADVLIVV-AG-MEGALPSVVAGL 193 (254)
T ss_pred CceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHhhh-hHHHHHHhhCCCeEEEE-cc-cccchHHHHHhc
Confidence 345778999964 678888888888778765 3444321 11111 12222222 33444444 44 357677766643
No 336
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=29.25 E-value=77 Score=31.22 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=24.3
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEe
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (360)
.+++++||+.|. .++|+|..|.+.|.+++||+.
T Consensus 143 ~~~~vvViGgG~---ig~E~A~~l~~~g~~Vtlv~~ 175 (396)
T PRK09754 143 PERSVVIVGAGT---IGLELAASATQRRCKVTVIEL 175 (396)
T ss_pred cCCeEEEECCCH---HHHHHHHHHHHcCCeEEEEec
Confidence 356788888774 466677777777888888875
No 337
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.07 E-value=2.5e+02 Score=22.98 Aligned_cols=90 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred eeeCCcEEEEEechhHHHHHHHHHHHHhcC-CCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHH
Q 018167 235 IREGSDITLVGWGAQLSIMEQACLDAEKEG-ISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASI 313 (360)
Q Consensus 235 l~~G~dv~Iia~G~~~~~al~Aa~~L~~~G-i~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l 313 (360)
+++-+.+.++++|.....|.+.+-.|.+.+ +.+..++.....--+ ...+.+...+|++.-+..+--.-..+++.+
T Consensus 10 ~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~----~~~~~~~~~vi~is~~g~t~~~~~~~~~~~ 85 (153)
T cd05009 10 LKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGP----IALVDEGTPVIFLAPEDRLEEKLESLIKEV 85 (153)
T ss_pred HhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccCh----hhhccCCCcEEEEecCChhHHHHHHHHHHH
Q ss_pred HHhccccCCCceEEEecCCC
Q 018167 314 LERCFLRLEAPVARVCGLDT 333 (360)
Q Consensus 314 ~~~~~~~l~~~~~~i~~~~~ 333 (360)
.+.+ .++..|...+.
T Consensus 86 ~~~~-----~~vi~it~~~~ 100 (153)
T cd05009 86 KARG-----AKVIVITDDGD 100 (153)
T ss_pred HHcC-----CEEEEEecCCc
No 338
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=29.04 E-value=1.3e+02 Score=25.43 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=34.6
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCC--eEEEEe
Q 018167 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG--RLLISH 297 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~--~ivvvE 297 (360)
++|++-|..-....++++.|++.|+.+-+|-+.. .+.+.|.+.+.+.. .++.+.
T Consensus 107 iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~~ 162 (164)
T cd01482 107 VILITDGKSQDDVELPARVLRNLGVNVFAVGVKD---ADESELKMIASKPSETHVFNVA 162 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHCCCEEEEEecCc---CCHHHHHHHhCCCchheEEEcC
Confidence 4455555544455678889988898877776543 45777777776543 455443
No 339
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=28.93 E-value=64 Score=28.00 Aligned_cols=43 Identities=9% Similarity=0.000 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeC
Q 018167 253 MEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHE 298 (360)
Q Consensus 253 al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe 298 (360)
..++++.|++.|+.+-.|-+ ...|.+.|.+.+.+.++++.+.+
T Consensus 123 ~~~~a~~l~~~gv~i~~vgv---~~~~~~~L~~iA~~~~~~f~~~~ 165 (185)
T cd01474 123 PEHEAKLSRKLGAIVYCVGV---TDFLKSQLINIADSKEYVFPVTS 165 (185)
T ss_pred hHHHHHHHHHcCCEEEEEee---chhhHHHHHHHhCCCCeeEecCc
Confidence 45566778888887666655 55788888887777777664433
No 340
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=28.89 E-value=55 Score=26.88 Aligned_cols=32 Identities=13% Similarity=0.007 Sum_probs=24.3
Q ss_pred cEEEEEechh-HHHHHHHHHHHHhcCCCeeEEE
Q 018167 240 DITLVGWGAQ-LSIMEQACLDAEKEGISCELID 271 (360)
Q Consensus 240 dv~Iia~G~~-~~~al~Aa~~L~~~Gi~v~Vi~ 271 (360)
++++..+|+. ...+.+..++|.++|+++.|+=
T Consensus 2 ~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~ 34 (129)
T PF02441_consen 2 RILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVL 34 (129)
T ss_dssp EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEE
T ss_pred EEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 5677777764 4568889999999999988773
No 341
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=28.82 E-value=2.4e+02 Score=20.86 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=41.4
Q ss_pred EEEEEechhHHHHHHHHHHHHh-----cCCCeeEEEeccccCCcHHHHHHHHh---cCCeEEEEeCCCcCCchHHHHHHH
Q 018167 241 ITLVGWGAQLSIMEQACLDAEK-----EGISCELIDLKTLIPWDKETVEASVR---KTGRLLISHEAPVTGGFGAEISAS 312 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~-----~Gi~v~Vi~~~~ikP~d~~~l~~~~~---~~~~ivvvEe~~~~GGlgs~v~~~ 312 (360)
++|.+.-. -..|.+|.+.|++ .|+..+.+|+.. .+...+.+.+... .+-..|+++. ...||+.+ +.++
T Consensus 3 v~iy~~~~-C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g-~~igg~~~-~~~~ 78 (85)
T PRK11200 3 VVIFGRPG-CPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQ-KHIGGCTD-FEAY 78 (85)
T ss_pred EEEEeCCC-ChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECC-EEEcCHHH-HHHH
Confidence 44444332 4556666666666 799999999986 3333445555443 2334455654 45788755 4555
Q ss_pred HHH
Q 018167 313 ILE 315 (360)
Q Consensus 313 l~~ 315 (360)
+.+
T Consensus 79 ~~~ 81 (85)
T PRK11200 79 VKE 81 (85)
T ss_pred HHH
Confidence 544
No 342
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=28.76 E-value=1.4e+02 Score=26.11 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCC-eEEEEeC
Q 018167 253 MEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTG-RLLISHE 298 (360)
Q Consensus 253 al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~-~ivvvEe 298 (360)
..++++.++++||.+-+|-+-. +.+.|++.++.++ +.+.+++
T Consensus 125 ~~~~~~~l~~~~I~v~~IgiG~----~~~~L~~ia~~tgG~~~~~~~ 167 (183)
T cd01453 125 IYETIDKLKKENIRVSVIGLSA----EMHICKEICKATNGTYKVILD 167 (183)
T ss_pred HHHHHHHHHHcCcEEEEEEech----HHHHHHHHHHHhCCeeEeeCC
Confidence 3467788888899988888753 4466888888775 5566554
No 343
>TIGR03586 PseI pseudaminic acid synthase.
Probab=28.65 E-value=5.6e+02 Score=24.94 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=42.9
Q ss_pred EEEEEech-hHHHHHHHHHHHHhcCC-CeeEEEeccccCCcHH-----HHHHHHh-cCCeEEEEeCCCcCCchHHHHHHH
Q 018167 241 ITLVGWGA-QLSIMEQACLDAEKEGI-SCELIDLKTLIPWDKE-----TVEASVR-KTGRLLISHEAPVTGGFGAEISAS 312 (360)
Q Consensus 241 v~Iia~G~-~~~~al~Aa~~L~~~Gi-~v~Vi~~~~ikP~d~~-----~l~~~~~-~~~~ivvvEe~~~~GGlgs~v~~~ 312 (360)
=+|+++|. ...+...|++.+.+.|. ++.+.++.+-.|-+.+ .+ ..++ .++..|-+-+|. .|..-.+++.
T Consensus 136 PvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i-~~lk~~f~~pVG~SDHt--~G~~~~~aAv 212 (327)
T TIGR03586 136 PIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTI-PDLAERFNVPVGLSDHT--LGILAPVAAV 212 (327)
T ss_pred cEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHH-HHHHHHhCCCEEeeCCC--CchHHHHHHH
Confidence 34677775 46888999999988887 6777776666664443 33 3333 355444355685 4554444444
Q ss_pred H
Q 018167 313 I 313 (360)
Q Consensus 313 l 313 (360)
.
T Consensus 213 a 213 (327)
T TIGR03586 213 A 213 (327)
T ss_pred H
Confidence 3
No 344
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=28.34 E-value=3e+02 Score=24.30 Aligned_cols=67 Identities=9% Similarity=0.205 Sum_probs=39.0
Q ss_pred echhHHHHHHHHHHHHhc-CCCeeEEEeccccCCcHHHH---------------HHHHhcCCeEEEEeCCCcCCchHHHH
Q 018167 246 WGAQLSIMEQACLDAEKE-GISCELIDLKTLIPWDKETV---------------EASVRKTGRLLISHEAPVTGGFGAEI 309 (360)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~ikP~d~~~l---------------~~~~~~~~~ivvvEe~~~~GGlgs~v 309 (360)
+|++-..|..+++.+++. |.++++++++...| .+.+ .+.+..++.|++.- ....|.+...+
T Consensus 11 ~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GS-Pty~g~~~~~l 87 (197)
T TIGR01755 11 YGHIETMARAVAEGAREVDGAEVVVKRVPETVP--EEVAEKSHGKTDQTAPVATPQELADYDAIIFGT-PTRFGNMASQM 87 (197)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeccccCc--HHHHHhccCCcccCCccCCHHHHHHCCEEEEEe-cccccCccHHH
Confidence 455667777777778764 99999999865422 1111 12344555554432 23456666666
Q ss_pred HHHHHH
Q 018167 310 SASILE 315 (360)
Q Consensus 310 ~~~l~~ 315 (360)
..++..
T Consensus 88 k~fld~ 93 (197)
T TIGR01755 88 RNFLDQ 93 (197)
T ss_pred HHHHHh
Confidence 665544
No 345
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=28.27 E-value=1.8e+02 Score=28.85 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=42.4
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccC-------------CcHHHHHHHHhcCCeEEEEeCCC
Q 018167 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIP-------------WDKETVEASVRKTGRLLISHEAP 300 (360)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP-------------~d~~~l~~~~~~~~~ivvvEe~~ 300 (360)
+.+-||+-|......-.|+..| |+++.|+|+..=.| -|.+.+.+.+.++. +||.|--+
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~l---G~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~D-ViT~EfE~ 72 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARL---GIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCD-VITYEFEN 72 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhc---CCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCC-EEEEeecc
Confidence 4577899888777666666655 99999998655444 24678888888776 88998543
No 346
>PRK00170 azoreductase; Reviewed
Probab=27.96 E-value=3e+02 Score=23.99 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhc--CCCeeEEEecccc-C-Cc------------------------HHHHHHHHhcCCeEEEEeCCCc
Q 018167 250 LSIMEQACLDAEKE--GISCELIDLKTLI-P-WD------------------------KETVEASVRKTGRLLISHEAPV 301 (360)
Q Consensus 250 ~~~al~Aa~~L~~~--Gi~v~Vi~~~~ik-P-~d------------------------~~~l~~~~~~~~~ivvvEe~~~ 301 (360)
...+..+++.|+++ |.+++++|+.... | ++ .+.+.+.+...+.||++=- ..
T Consensus 19 ~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~i~~AD~iV~~sP-~y 97 (201)
T PRK00170 19 MQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLEEFLAADKIVIAAP-MY 97 (201)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHCCEEEEeec-cc
Confidence 44555667778887 8999999997543 3 22 2234566777787776643 34
Q ss_pred CCchHHHHHHHHHH
Q 018167 302 TGGFGAEISASILE 315 (360)
Q Consensus 302 ~GGlgs~v~~~l~~ 315 (360)
.+++-+.+..++-.
T Consensus 98 ~~~~pa~LK~~iDr 111 (201)
T PRK00170 98 NFSIPTQLKAYIDL 111 (201)
T ss_pred ccCCcHHHHHHHHh
Confidence 57777777766643
No 347
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=27.92 E-value=4.6e+02 Score=25.74 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=18.7
Q ss_pred CCeEEEEeCCCcCCchHHHHHHHHHHhc
Q 018167 290 TGRLLISHEAPVTGGFGAEISASILERC 317 (360)
Q Consensus 290 ~~~ivvvEe~~~~GGlgs~v~~~l~~~~ 317 (360)
..+|+++ + .||+|+.++..|...+
T Consensus 135 ~~~Vlvv--G--~GG~Gs~ia~~La~~G 158 (376)
T PRK08762 135 EARVLLI--G--AGGLGSPAALYLAAAG 158 (376)
T ss_pred cCcEEEE--C--CCHHHHHHHHHHHHcC
Confidence 3467776 4 4999999999998765
No 348
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=27.90 E-value=2.3e+02 Score=20.17 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=40.4
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHh-cCCeEEEEeCCCcCCchHHHHHHHH
Q 018167 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHEAPVTGGFGAEISASI 313 (360)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~-~~~~ivvvEe~~~~GGlgs~v~~~l 313 (360)
+++|.+. +.-..|.+|.+.|++.|++.+.+|+.. .+ +.+.+.+... .+-..|+++.. ..||.. ++.++|
T Consensus 2 ~v~lys~-~~Cp~C~~ak~~L~~~~i~~~~~~v~~-~~-~~~~~~~~~g~~~vP~ifi~g~-~igg~~-~l~~~l 71 (72)
T cd03029 2 SVSLFTK-PGCPFCARAKAALQENGISYEEIPLGK-DI-TGRSLRAVTGAMTVPQVFIDGE-LIGGSD-DLEKYF 71 (72)
T ss_pred eEEEEEC-CCCHHHHHHHHHHHHcCCCcEEEECCC-Ch-hHHHHHHHhCCCCcCeEEECCE-EEeCHH-HHHHHh
Confidence 3455543 446778888899999999999998764 22 3333332211 12344666544 568854 344443
No 349
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.89 E-value=5.4e+02 Score=25.00 Aligned_cols=119 Identities=11% Similarity=0.093 Sum_probs=69.9
Q ss_pred hHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCCEEEeccccccccCcccCCCCCcccCCCceEEeeeCCcEEEEEe
Q 018167 168 SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGW 246 (360)
Q Consensus 168 ~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~~~-~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G~dv~Iia~ 246 (360)
|.+.++..-.+|.|+.-+...++..-+-..+.. -+++-+ ...|++...+.+.. . + .|+||.||.+
T Consensus 11 ~~~~~~~~~~~~~i~~g~~~~~la~~ia~~lg~~l~~~~~-----------~~FpDGE~~v~i~~-~-v-rg~~V~ivqs 76 (330)
T PRK02812 11 EQLPLLSDNNRLRLFSGSSNPALAQEVARYLGMDLGPMIR-----------KRFADGELYVQIQE-S-I-RGCDVYLIQP 76 (330)
T ss_pred CCCccccCCCCEEEEECCCCHHHHHHHHHHhCCCceeeEE-----------EECCCCCEEEEeCC-C-C-CCCEEEEECC
Confidence 445666666788888877777777666665542 112111 11122211111110 0 1 3789999998
Q ss_pred ch-----hHHHHHHHHHHHHhcCC-CeeEEEecc---------c--cCCcHHHHHHHHhc--CCeEEEEeCCC
Q 018167 247 GA-----QLSIMEQACLDAEKEGI-SCELIDLKT---------L--IPWDKETVEASVRK--TGRLLISHEAP 300 (360)
Q Consensus 247 G~-----~~~~al~Aa~~L~~~Gi-~v~Vi~~~~---------i--kP~d~~~l~~~~~~--~~~ivvvEe~~ 300 (360)
.. ..-+.+-.++.|++.|. ++++|=+.. - .|+....+.+.+.. ..+++|+|-|+
T Consensus 77 ~~~p~nd~l~eLll~~~alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~~g~d~vitvDlH~ 149 (330)
T PRK02812 77 TCAPVNDHLMELLIMVDACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKAGADRVLAMDLHS 149 (330)
T ss_pred CCCCccHHHHHHHHHHHHHHHhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCc
Confidence 53 34456667777777775 466663221 1 26777777777765 57999999986
No 350
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=27.77 E-value=3.1e+02 Score=28.63 Aligned_cols=110 Identities=10% Similarity=0.054 Sum_probs=60.7
Q ss_pred CCcEEechh--HHHHHHHHHHHHhcCC-CeeEEEecCcc--cHHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCC
Q 018167 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (360)
Q Consensus 85 p~r~i~~GI--aE~~~vg~AaGlA~~G-~~p~~~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g 159 (360)
|.+|++.+- +=-..++.|.|.+++. -++++.+ -.+ |++.+-| |- -+...+ +|+ .+|+...+++.-
T Consensus 408 ~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i-~GDG~f~m~~~e-L~-Ta~~~~------l~i-~~vV~NN~~y~~ 477 (566)
T PRK07282 408 ERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILF-VGDGGFQMTNQE-LA-ILNIYK------VPI-KVVMLNNHSLGM 477 (566)
T ss_pred CCcEecCCccccccchhhHhheeheecCCCcEEEE-EcchhhhccHHH-HH-HHHHhC------CCe-EEEEEeCCCchH
Confidence 788887641 1223455566666653 3566664 444 5444322 22 244433 466 556555554321
Q ss_pred --------CCCC--CC---CchHHH-HHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCCEEE
Q 018167 160 --------HGGH--YH---SQSPEA-FFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (360)
Q Consensus 160 --------~~g~--~H---s~~d~a-~~r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~i 206 (360)
.++. .. ..-|++ +.+++ |..-+.-.++.|+..+++. +..++|++|
T Consensus 478 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~-~~~~~p~lI 536 (566)
T PRK07282 478 VRQWQESFYEGRTSESVFDTLPDFQLMAQAY-GIKHYKFDNPETLAQDLEV-ITEDVPMLI 536 (566)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHH-hcCCCCEEE
Confidence 1111 10 112333 33444 7778888999999999974 667899999
No 351
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=27.73 E-value=75 Score=30.75 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=27.7
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEec
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (360)
.+++++||..| ...++++..|.+.|.++.+++..
T Consensus 17 ~~~~VvIIG~G---~aGl~aA~~l~~~g~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAG---PAGLAAAGYLACLGYEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcC---HHHHHHHHHHHHCCCcEEEEeCC
Confidence 46789999999 45577888888889999999863
No 352
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=27.48 E-value=1.8e+02 Score=28.76 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=35.4
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHh-cCCeEEEEeC
Q 018167 239 SDITLVGWGAQ-LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHE 298 (360)
Q Consensus 239 ~dv~Iia~G~~-~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~-~~~~ivvvEe 298 (360)
.++.|+..|.. ...|++.++.|+++|+.+.+ +... +.+ .+.+...-+ +...++++.+
T Consensus 319 ~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i-~~~~-~~~-~~~~~~a~~~gi~~~viig~ 377 (412)
T PRK00037 319 VDVYVVPLGEDAELAALKLAEKLRAAGIRVEL-DYGG-RKL-KKQFKYADKSGARFVLILGE 377 (412)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHCCCeEEE-eCCC-CCH-HHHHHHHHHcCCCEEEEECh
Confidence 58888887753 45688888999988998876 4432 233 233433322 3455666654
No 353
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=27.45 E-value=85 Score=25.39 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=23.8
Q ss_pred EEEEEechh--HHHHHHHHHHHHhcCCCeeEEEecc
Q 018167 241 ITLVGWGAQ--LSIMEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 241 v~Iia~G~~--~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
|+|++.|+. +...+..+++|.+.|.+|.+.-.+.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGG
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeeccc
Confidence 456666654 6778888889988898888665444
No 354
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=27.45 E-value=2.9e+02 Score=21.21 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=39.0
Q ss_pred EEEEEechhHHHHHHH----HHHHHhcC--CCeeEEEeccccCCcHHHHHHHHhc-CCeEEEEeCCCcCCchH-HHHHHH
Q 018167 241 ITLVGWGAQLSIMEQA----CLDAEKEG--ISCELIDLKTLIPWDKETVEASVRK-TGRLLISHEAPVTGGFG-AEISAS 312 (360)
Q Consensus 241 v~Iia~G~~~~~al~A----a~~L~~~G--i~v~Vi~~~~ikP~d~~~l~~~~~~-~~~ivvvEe~~~~GGlg-s~v~~~ 312 (360)
++|++.|+....+.+. ++.|++.. ..+.+--+..-.|--.+.+.+..+. .++++++==.-..|.-- ..|.+.
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~dip~~ 81 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKEDIPAA 81 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccccccHHHH
Confidence 5789999876544444 44454442 3444333333367667777665543 56777664433333322 234444
Q ss_pred HH
Q 018167 313 IL 314 (360)
Q Consensus 313 l~ 314 (360)
+.
T Consensus 82 ~~ 83 (101)
T cd03416 82 LA 83 (101)
T ss_pred HH
Confidence 43
No 355
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=27.40 E-value=76 Score=29.26 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=24.2
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCCeeEEEec
Q 018167 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (360)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (360)
|++||+.|. ..+.||..|.+.|.++.|||..
T Consensus 2 dvvIIG~G~---aGl~aA~~l~~~g~~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGP---AGLTAAIYAARANLKTLIIEGM 32 (300)
T ss_pred cEEEECCCH---HHHHHHHHHHHCCCCEEEEecc
Confidence 789999886 3445667777789999999953
No 356
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=27.31 E-value=71 Score=29.64 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=27.2
Q ss_pred CCCeeEEEeccc-cCCcHH-HHHHHHhcCCeEEEEeCCCcCC---chHHHHHHHHHHh
Q 018167 264 GISCELIDLKTL-IPWDKE-TVEASVRKTGRLLISHEAPVTG---GFGAEISASILER 316 (360)
Q Consensus 264 Gi~v~Vi~~~~i-kP~d~~-~l~~~~~~~~~ivvvEe~~~~G---Glgs~v~~~l~~~ 316 (360)
+-+.-+|++.-+ +|++.= .=...+...+-++++=+....+ .++.+ .+.+.+.
T Consensus 127 ~hDF~~ISLSDlLtPwe~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a-~eil~~~ 183 (249)
T COG1010 127 GHDFCVISLSDLLTPWEVIEKRLRAAAEADFVIALYNPISKRRPEQLGRA-FEILREH 183 (249)
T ss_pred ccceEEEEhHhcCCcHHHHHHHHHHHhhCCEEEEEECCccccchHHHHHH-HHHHHHh
Confidence 345556666654 676541 1123344567777777655444 45544 3445443
No 357
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=27.10 E-value=2.6e+02 Score=21.16 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=36.5
Q ss_pred EEEEEechhHH-----HHHHHHHHHHhc--CCCeeEEEeccccCCcHHHHHHHHhc-CCeEEEEeCCCc
Q 018167 241 ITLVGWGAQLS-----IMEQACLDAEKE--GISCELIDLKTLIPWDKETVEASVRK-TGRLLISHEAPV 301 (360)
Q Consensus 241 v~Iia~G~~~~-----~al~Aa~~L~~~--Gi~v~Vi~~~~ikP~d~~~l~~~~~~-~~~ivvvEe~~~ 301 (360)
+++++.|+... ...+.++.|++. +..+.+--.....|.-.+.+.+..+. .++|+++==...
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~ 70 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccc
Confidence 56788887653 334445566554 34555444444488877877766543 467877755544
No 358
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=26.94 E-value=3.1e+02 Score=29.02 Aligned_cols=59 Identities=10% Similarity=0.041 Sum_probs=37.8
Q ss_pred CcEEEEEechhHHHHHHHHHHH----HhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCch
Q 018167 239 SDITLVGWGAQLSIMEQACLDA----EKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGF 305 (360)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L----~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGl 305 (360)
+.++ |-||+.+..|.+.|+.| ++.|+++.|+++...+|- .+.+.+.++++--.+-.|-.
T Consensus 62 ~~v~-IlygSqTGnae~lA~~la~~l~~~g~~~~v~~~~d~~~~-------~L~~~~~vl~v~ST~G~Ge~ 124 (600)
T PRK10953 62 PGIT-LISASQTGNARRVAEQLRDDLLAAKLNVNLVNAGDYKFK-------QIAQEKLLIVVTSTQGEGEP 124 (600)
T ss_pred CeEE-EEEEcCchHHHHHHHHHHHHHHhCCCCcEEechHhCCHh-------HhccCCeEEEEECCCCCCCC
Confidence 3454 45899888888877765 455999999988776442 23455666666544334433
No 359
>PRK09739 hypothetical protein; Provisional
Probab=26.76 E-value=1.6e+02 Score=26.04 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEecccc--C------------------CcHHHHHHHHhcCCeEEEEeCCCcCCchHHHH
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLI--P------------------WDKETVEASVRKTGRLLISHEAPVTGGFGAEI 309 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ik--P------------------~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v 309 (360)
...+...++.+++.|.+++++|+.... | -|.+.+.+.+.....+|++=- ...+++-+.+
T Consensus 20 ~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P-~y~~~~Pa~L 98 (199)
T PRK09739 20 AKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFP-LWWYSFPAML 98 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECc-hhhhcchHHH
Confidence 444555667788889999999987642 1 122456677888888777643 3457787777
Q ss_pred HHHHHH
Q 018167 310 SASILE 315 (360)
Q Consensus 310 ~~~l~~ 315 (360)
..++-.
T Consensus 99 K~~iD~ 104 (199)
T PRK09739 99 KGYIDR 104 (199)
T ss_pred HHHHHH
Confidence 776643
No 360
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=26.74 E-value=1.1e+02 Score=26.92 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=25.3
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCCee
Q 018167 240 DITLVGWGAQLSIMEQACLDAEKEGISCE 268 (360)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~ 268 (360)
...|++|......|.+.|++|+++|..+.
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~ 95 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVS 95 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SES
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccC
Confidence 67899999999999999999999999774
No 361
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=26.48 E-value=1.7e+02 Score=27.82 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=35.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc----------ccCCcHHHHHHHHhcCCeE
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT----------LIPWDKETVEASVRKTGRL 293 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~----------ikP~d~~~l~~~~~~~~~i 293 (360)
.|+.+.|+++|.+-. .+++.|...|.++.|++-.. ..+++.+.+.+.+++..-|
T Consensus 150 ~gk~v~IiG~G~iG~---avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiV 213 (287)
T TIGR02853 150 HGSNVMVLGFGRTGM---TIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIV 213 (287)
T ss_pred CCCEEEEEcChHHHH---HHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEE
Confidence 378899999998554 34556667788888887532 2344445555666665533
No 362
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=26.41 E-value=2e+02 Score=28.39 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=36.2
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHh-cCCeEEEEeC
Q 018167 239 SDITLVGWGA-QLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHE 298 (360)
Q Consensus 239 ~dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~-~~~~ivvvEe 298 (360)
.++.|++.+. ....+++.+..|++.|+.|++ +... +++. +.+...-+ +...++++.+
T Consensus 323 ~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~-~~~~-~~l~-k~~~~a~~~g~~~~i~ig~ 381 (397)
T TIGR00442 323 PDVYVVPLGEEAELEALKLAQKLRKAGIRVEV-DLGG-RKLK-KQLKYADKLGARFAVILGE 381 (397)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEE-eCCC-CCHH-HHHHHHHHcCCCEEEEECh
Confidence 4777887775 457788888999999999875 3332 3443 33433322 3466777754
No 363
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=26.20 E-value=1.3e+02 Score=22.53 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=36.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHh--cCCeEEEEeCC
Q 018167 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR--KTGRLLISHEA 299 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~--~~~~ivvvEe~ 299 (360)
++|.+.=. -..|..|.+.|.+.|++.+.+++..-.+-..+...+... .+-..|++.+.
T Consensus 3 v~iyt~~~-CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~ 62 (80)
T COG0695 3 VTIYTKPG-CPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGK 62 (80)
T ss_pred EEEEECCC-CchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCE
Confidence 44444332 456788888999999999999998866522222223332 34456777764
No 364
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=26.17 E-value=1.5e+02 Score=28.06 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=24.8
Q ss_pred CCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCC
Q 018167 264 GISCELIDLKTLIPWDKETVEASVRKTGRLLISHEA 299 (360)
Q Consensus 264 Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~ 299 (360)
++.+=+.| ++=.+++.+.+.+.++...+|+-+=+.
T Consensus 130 ~~pvilYn-~~g~~l~~~~~~~La~~~~nvvgiKds 164 (296)
T TIGR03249 130 DLGVIVYQ-RDNAVLNADTLERLADRCPNLVGFKDG 164 (296)
T ss_pred CCCEEEEe-CCCCCCCHHHHHHHHhhCCCEEEEEeC
Confidence 56777777 454578888887777667788877554
No 365
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=26.07 E-value=3.1e+02 Score=32.96 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=27.1
Q ss_pred CcEEEeeCCHHHHHHHHHHhHhCCCCEEEe
Q 018167 178 GLKVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (360)
Q Consensus 178 n~~V~~P~d~~e~~~~l~~a~~~~~P~~i~ 207 (360)
|+.-....++.|+..++.++...++|++|-
T Consensus 856 G~~~~rV~~~~eL~~aL~~a~~~~~p~lIE 885 (1655)
T PLN02980 856 GVRHLHVGTKSELEDALFTSQVEQMDCVVE 885 (1655)
T ss_pred CCceeecCCHHHHHHHHHHhhccCCCEEEE
Confidence 678888899999999999999889999983
No 366
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=26.05 E-value=3e+02 Score=26.08 Aligned_cols=139 Identities=13% Similarity=0.071 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecCcccHH---
Q 018167 47 NQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIF--- 123 (360)
Q Consensus 47 ~~~L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~~F~~--- 123 (360)
.+++.++-++.|+++++.++... -...-.+. -|=.+|.- .+..--.++.-....|.+.|++++|.-.+.
T Consensus 76 ~~af~kIkekRpDIl~ia~~~~E------Dp~~i~~~-aDi~~~~D-~~~~G~~i~~~Ak~mGAktFVh~sfprhms~~~ 147 (275)
T PF12683_consen 76 AEAFRKIKEKRPDILLIAGEPHE------DPEVISSA-ADIVVNPD-EISRGYTIVWAAKKMGAKTFVHYSFPRHMSYEL 147 (275)
T ss_dssp HHHHHHHHHH-TTSEEEESS--S-------HHHHHHH-SSEEEE---HHHHHHHHHHHHHHTT-S-EEEEEETTGGGSHH
T ss_pred HHHHHHHHhcCCCeEEEcCCCcC------CHHHHhhc-cCeEeccc-hhhccHHHHHHHHHcCCceEEEEechhhcchHH
Confidence 45555666667777777776542 12222333 36666632 222222333434446999999987776652
Q ss_pred -HHHHHHHHHHHhcccccCCCccccceEEEc---CCCCCCCCCCCCC-chHH-HHHcCCCCcEEEeeCCHHHHHHHHHHh
Q 018167 124 -PAFDQIVNEAAKFRYRSGNQFNCGGLTVRA---PYGAVGHGGHYHS-QSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (360)
Q Consensus 124 -ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~---~~g~~g~~g~~Hs-~~d~-a~~r~iPn~~V~~P~d~~e~~~~l~~a 197 (360)
.-.-++....|... -+ +++... |.+..|-.|..+- .||+ +|+..--.=+-+..++....+.+++.+
T Consensus 148 l~~Rr~~M~~~C~~l-------Gi-~fv~~taPDP~sd~gv~gaqqfIlE~vp~~i~kYGkdtaff~TN~a~~epllk~~ 219 (275)
T PF12683_consen 148 LARRRDIMEEACKDL-------GI-KFVEVTAPDPTSDVGVAGAQQFILEDVPKWIKKYGKDTAFFCTNDAMTEPLLKQA 219 (275)
T ss_dssp HHHHHHHHHHHHHHC-------T---EEEEEE---SSTCHHHHHHHHHHHHHHHHHHHH-S--EEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-------CC-eEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCceeEEecCccccHHHHHHH
Confidence 12222333455422 23 444332 2222222222221 3454 444433333577788888889999999
Q ss_pred HhCC
Q 018167 198 IRDP 201 (360)
Q Consensus 198 ~~~~ 201 (360)
+++.
T Consensus 220 ~~~g 223 (275)
T PF12683_consen 220 LEYG 223 (275)
T ss_dssp HHH-
T ss_pred HHcC
Confidence 9863
No 367
>PRK10126 tyrosine phosphatase; Provisional
Probab=26.04 E-value=75 Score=26.78 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEe-----
Q 018167 255 QACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVC----- 329 (360)
Q Consensus 255 ~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~----- 329 (360)
.|++.|++.||+..= +.-++++.+.+ .....||++|+.+. ..+.....+ ...++..++
T Consensus 48 ~a~~~l~~~Gid~~~---h~sr~lt~~~~----~~~DlIl~Md~~~~-----~~l~~~~p~-----~~~k~~~l~~~~~~ 110 (147)
T PRK10126 48 TAISVAAEHQLSLEG---HCARQISRRLC----RNYDLILTMEKRHI-----ERLCEMAPE-----MRGKVMLFGHWDNE 110 (147)
T ss_pred HHHHHHHHcCCCcCC---CccccCCHHHh----ccCCEEEECCHHHH-----HHHHHhcCc-----ccCcEEehhhhCCC
Confidence 455667777888532 34466765543 35788999976531 122221111 112332221
Q ss_pred -cCCCCccccccccCCCCHHHHHHHHHHhhh
Q 018167 330 -GLDTPFPLVFEPFYMPTKNKILDAIKSTVN 359 (360)
Q Consensus 330 -~~~~~~~~~~e~~gl~~~~~I~~~i~~~l~ 359 (360)
..++|+..-.+.|.- ..+.|.++++.+++
T Consensus 111 ~~I~DP~~~~~~~f~~-~~~~I~~~i~~l~~ 140 (147)
T PRK10126 111 CEIPDPYRKSREAFEA-VYTLLERSARQWAQ 140 (147)
T ss_pred CCCCCCCCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 144565544555555 67778888877764
No 368
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=25.91 E-value=81 Score=28.86 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=23.2
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc
Q 018167 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
||+||+.|..-- .+|-.|++.|++|.||+-..
T Consensus 2 dv~IiGaG~aGl---~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGA---SAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHH---HHHHHHHHCCCeEEEEeccC
Confidence 789999887422 23445677899999998764
No 369
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=25.69 E-value=1.4e+02 Score=26.86 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=37.3
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcC--CeEEEEeC
Q 018167 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT--GRLLISHE 298 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~--~~ivvvEe 298 (360)
++|++-|.......++++.|++.|+.+-.|-+-. .|.+.|.+.+... +.++.+++
T Consensus 112 villTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~---~~~~~L~~ias~~~~~~~f~~~~ 168 (224)
T cd01475 112 GIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGR---ADEEELREIASEPLADHVFYVED 168 (224)
T ss_pred EEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCc---CCHHHHHHHhCCCcHhcEEEeCC
Confidence 4566666544456677888888898877776654 5788888877653 35666655
No 370
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=25.58 E-value=79 Score=27.65 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=22.2
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEec
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (360)
+++.++||.||+. ..+ -+.-|++.|++|.|-.-.
T Consensus 3 ~~k~IAViGyGsQ-G~a--~AlNLrDSG~~V~Vglr~ 36 (165)
T PF07991_consen 3 KGKTIAVIGYGSQ-GHA--HALNLRDSGVNVIVGLRE 36 (165)
T ss_dssp CTSEEEEES-SHH-HHH--HHHHHHHCC-EEEEEE-T
T ss_pred CCCEEEEECCChH-HHH--HHHHHHhCCCCEEEEecC
Confidence 4788999999987 333 345688889988765443
No 371
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=25.54 E-value=85 Score=31.71 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=27.6
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEec
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (360)
.+.+++||+.|. ..+.||..|.+.|.++.|++..
T Consensus 132 ~~~~V~IIG~G~---aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGP---AGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCH---HHHHHHHHHHHCCCcEEEEecC
Confidence 467999999994 5566788888889999999853
No 372
>PRK12753 transketolase; Reviewed
Probab=25.54 E-value=6.2e+02 Score=27.20 Aligned_cols=77 Identities=10% Similarity=-0.000 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC--chHH-HHHcCCCCcEEEeeCCHH---HHHHHHHH
Q 018167 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS--QSPE-AFFCHVPGLKVVIPRSPR---QAKGLLLS 196 (360)
Q Consensus 123 ~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs--~~d~-a~~r~iPn~~V~~P~d~~---e~~~~l~~ 196 (360)
..++|-+. .++..++ +. -+++.+..... -+|+++. .+|+ ..+++. |+.++.+.|.. ++..+++.
T Consensus 161 G~~~EA~~-~A~~~kL------~n-Li~ivd~N~~~-i~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~ 230 (663)
T PRK12753 161 GISHEVCS-LAGTLGL------GK-LIGFYDHNGIS-IDGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILE 230 (663)
T ss_pred HHHHHHHH-HHHHHCC------CC-EEEEEECCCCc-CCCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHH
Confidence 46777665 4676664 32 23345544422 2333331 3444 456666 88888655554 55555665
Q ss_pred hHhC-CCCEEEecc
Q 018167 197 CIRD-PNPVVFFEP 209 (360)
Q Consensus 197 a~~~-~~P~~i~~~ 209 (360)
+.+. ++|++|...
T Consensus 231 a~~~~~~P~~I~~~ 244 (663)
T PRK12753 231 AQSVKDKPSLIICR 244 (663)
T ss_pred HHHCCCCeEEEEEE
Confidence 6554 789999644
No 373
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=25.43 E-value=4.1e+02 Score=27.87 Aligned_cols=145 Identities=18% Similarity=0.135 Sum_probs=86.8
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCccccchhHHHHhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEe-cCcccHHHHHHH
Q 018167 50 LHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-QFADYIFPAFDQ 128 (360)
Q Consensus 50 L~~l~~~~~~vv~i~~Dl~~g~~~~~~~~~~~~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~-~f~~F~~ra~dQ 128 (360)
+++|.+..=+=+|+++...+ + .+.-...++ ++=-.-+-|.|..+-=+|.|+|..-.+|++-+ |..+-...-|--
T Consensus 15 ~eeL~r~GV~~vvicPGSRS-T---PLala~~~~-~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~PA 89 (566)
T COG1165 15 LEELARLGVRDVVICPGSRS-T---PLALAAAAH-DAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLYPA 89 (566)
T ss_pred HHHHHHcCCcEEEECCCCCC-c---HHHHHHHhc-CCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhccHH
Confidence 44445555555777776442 2 122233455 55566788999999999999999988888765 344333333343
Q ss_pred HHHHHHhcccccCCCccccceEEEcCCCC--CCCCCCCCCchHHHHHcCCCCcEEE--eeCCHHHHHHHHHHhHh-----
Q 018167 129 IVNEAAKFRYRSGNQFNCGGLTVRAPYGA--VGHGGHYHSQSPEAFFCHVPGLKVV--IPRSPRQAKGLLLSCIR----- 199 (360)
Q Consensus 129 i~~~~a~~~~~~~~~~~v~~~v~~~~~g~--~g~~g~~Hs~~d~a~~r~iPn~~V~--~P~d~~e~~~~l~~a~~----- 199 (360)
|. .+.+.+ + ++|+....=+ .-+-|..+.++...++.+.|+..+= .|.+..++.+.+++...
T Consensus 90 Vi-EA~~sr--------v-pLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~ 159 (566)
T COG1165 90 VI-EANLSR--------V-PLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQ 159 (566)
T ss_pred HH-hhhhcC--------C-ceEEEeCCCCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 54 355443 3 5555432211 1234566778889999988866443 56666666555554322
Q ss_pred ----CCCCEEEecc
Q 018167 200 ----DPNPVVFFEP 209 (360)
Q Consensus 200 ----~~~P~~i~~~ 209 (360)
..|||=|=.|
T Consensus 160 a~~~~~GpVHiN~P 173 (566)
T COG1165 160 ARTPHAGPVHINVP 173 (566)
T ss_pred ccCCCCCceEecCC
Confidence 2688887433
No 374
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.00 E-value=77 Score=23.30 Aligned_cols=53 Identities=23% Similarity=0.110 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhc
Q 018167 250 LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERC 317 (360)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~ 317 (360)
++.|+++-+.|++.|++++++ |.|.+ .-..++-.+-+++.. -+.+.+.+.+++
T Consensus 11 t~~a~~~ek~lk~~gi~~~li------P~P~~----i~~~CG~al~~~~~d-----~~~i~~~l~~~~ 63 (73)
T PF11823_consen 11 THDAMKAEKLLKKNGIPVRLI------PTPRE----ISAGCGLALRFEPED-----LEKIKEILEENG 63 (73)
T ss_pred HHHHHHHHHHHHHCCCcEEEe------CCChh----ccCCCCEEEEEChhh-----HHHHHHHHHHCC
Confidence 678899999999999999887 55544 223466666665432 245555565543
No 375
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=24.95 E-value=40 Score=27.15 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=25.6
Q ss_pred eCCcEEEEEechhH-HHHHHHHHHHHhcCCCeeEEEec
Q 018167 237 EGSDITLVGWGAQL-SIMEQACLDAEKEGISCELIDLK 273 (360)
Q Consensus 237 ~G~dv~Iia~G~~~-~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (360)
...+++||++|... ..--+..+.|++.||.+++.|-.
T Consensus 51 ~~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 51 LQPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred cCCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 34689999999753 22334446788889998887644
No 376
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=24.91 E-value=97 Score=24.29 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=26.6
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
+|+.++||+.|.... .-++.|.+.|-++.||....
T Consensus 6 ~~~~vlVvGgG~va~---~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAA---RKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHH---HHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHH---HHHHHHHhCCCEEEEECCch
Confidence 578899999998554 44566777899999998875
No 377
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=24.86 E-value=87 Score=27.10 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=22.4
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEE
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELID 271 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~ 271 (360)
+|++|+||+.|. .|.+++..|.+.|-+++++.
T Consensus 166 ~~k~V~VVG~G~---SA~d~a~~l~~~g~~V~~~~ 197 (203)
T PF13738_consen 166 KGKRVVVVGGGN---SAVDIAYALAKAGKSVTLVT 197 (203)
T ss_dssp TTSEEEEE--SH---HHHHHHHHHTTTCSEEEEEE
T ss_pred CCCcEEEEcChH---HHHHHHHHHHhhCCEEEEEe
Confidence 368999999997 45566777878887777763
No 378
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=24.81 E-value=2.3e+02 Score=25.33 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEe
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (360)
+|+.++||+.|.+... .++.|.+.|-++.||+.
T Consensus 9 ~~k~vLVIGgG~va~~---ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGR---RAITLLKYGAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHH---HHHHHHHCCCeEEEEcC
Confidence 5788999999986543 44566678889999974
No 379
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=24.65 E-value=1.8e+02 Score=27.61 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=34.9
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccc----------cCCcHHHHHHHHhcCCeEE
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL----------IPWDKETVEASVRKTGRLL 294 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~i----------kP~d~~~l~~~~~~~~~iv 294 (360)
.|+++.|+++|.+... ++..|...|.++.++|-+.- ++.+.+.+.+.+++..-||
T Consensus 151 ~g~kvlViG~G~iG~~---~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI 215 (296)
T PRK08306 151 HGSNVLVLGFGRTGMT---LARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIF 215 (296)
T ss_pred CCCEEEEECCcHHHHH---HHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEE
Confidence 4789999999985544 44556667888888877632 2233344555555555443
No 380
>cd06064 H2MP_F420-Reduc Endopeptidases belonging to F420-reducing hydrogenases group. These hydrogenases from methanogens are encoded by the fru, frc, or frh genes. Sequence comparison indicates that fruD and frcD gene products from Methanococcus voltae are similar to HycI protease of Escherichia coli and are putatively involved in the C-terminal processing of large subunits (FruA and FrcA respectively). FrhD (F420 reducing hydrogenase delta subunit) enzyme belongs to the gene cluster of 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) from the thermophilic methanogen Methanobacterium thermoautotrophicum delta H. FrhD subunit is putatively involved in the processing of the coenzyme F420 hydrogenase-processing. It is similar to those frhD genes found in Methanomicrobia and Methanobacteria. It is different from the FrhD conserved domain found in methyl viologen-reducing hydrogenase and F420-non-reducing hydrogenase iron-sulfur subunit D.
Probab=24.62 E-value=1e+02 Score=26.10 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=16.5
Q ss_pred EEEechhHH----HHHHHHHHHHhcCC---CeeEEEecc
Q 018167 243 LVGWGAQLS----IMEQACLDAEKEGI---SCELIDLKT 274 (360)
Q Consensus 243 Iia~G~~~~----~al~Aa~~L~~~Gi---~v~Vi~~~~ 274 (360)
|+++|+... ....++++|++... +++++|..+
T Consensus 2 ViGiGN~l~gDDgvG~~va~~l~~~~~~~~~v~vid~g~ 40 (150)
T cd06064 2 VVGCGNILFGDDGFGPAVIEELEKLELLPDNVQVIDAGT 40 (150)
T ss_pred EEEECCcccccCcHHHHHHHHHHhccCCCCCEEEEECCC
Confidence 455555441 34555666654432 356666555
No 381
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=24.54 E-value=1.1e+02 Score=28.30 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=21.9
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEe
Q 018167 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (360)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (360)
.|++|++.|+. -+.||..|.++|.++-|++-
T Consensus 18 ~DV~IVGaGpa---Gl~aA~~La~~g~kV~v~E~ 48 (230)
T PF01946_consen 18 YDVAIVGAGPA---GLTAAYYLAKAGLKVAVIER 48 (230)
T ss_dssp ESEEEE--SHH---HHHHHHHHHHHTS-EEEEES
T ss_pred CCEEEECCChh---HHHHHHHHHHCCCeEEEEec
Confidence 58999999984 44567788888999999874
No 382
>PRK05802 hypothetical protein; Provisional
Probab=24.49 E-value=3.1e+02 Score=26.41 Aligned_cols=37 Identities=11% Similarity=0.004 Sum_probs=28.2
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCCeeEE-Eecc
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELI-DLKT 274 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi-~~~~ 274 (360)
+.++++||-|+.+...+..++.|.+++-++.++ ..++
T Consensus 172 ~~~~llIaGGiGIaPl~~l~~~l~~~~~~v~li~g~r~ 209 (320)
T PRK05802 172 NGKSLVIARGIGQAPGVPVIKKLYSNGNKIIVIIDKGP 209 (320)
T ss_pred CCeEEEEEeEEeHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 457999999999999999898887777666544 3444
No 383
>PLN02275 transferase, transferring glycosyl groups
Probab=24.27 E-value=3.5e+02 Score=26.23 Aligned_cols=106 Identities=9% Similarity=0.036 Sum_probs=57.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhcc
Q 018167 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCF 318 (360)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~ 318 (360)
-.++|++.|.......+.++ +.|++= ++-.. ..++.+.+.+.++..+-.++.......-|++..+.|+++-
T Consensus 262 i~l~ivG~G~~~~~l~~~~~---~~~l~~-v~~~~--~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~--- 332 (371)
T PLN02275 262 LLFIITGKGPQKAMYEEKIS---RLNLRH-VAFRT--MWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGC--- 332 (371)
T ss_pred eEEEEEeCCCCHHHHHHHHH---HcCCCc-eEEEc--CCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHC---
Confidence 45778888876654444333 345542 22221 1245677777777777544322222224688888888764
Q ss_pred ccCCCceEEEecCCCCcccccc--ccC--CCCHHHHHHHHHHhh
Q 018167 319 LRLEAPVARVCGLDTPFPLVFE--PFY--MPTKNKILDAIKSTV 358 (360)
Q Consensus 319 ~~l~~~~~~i~~~~~~~~~~~e--~~g--l~~~~~I~~~i~~~l 358 (360)
..|+.-. ..+ ..+++.+ ..| .|+++++.+++.+++
T Consensus 333 ---G~PVVa~-~~g-g~~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 333 ---GLPVCAV-SYS-CIGELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred ---CCCEEEe-cCC-ChHHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 3455322 111 1233221 122 257889999888764
No 384
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=24.17 E-value=1e+02 Score=24.13 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=28.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc---------------ccCCcHHHHHHH-HhcCCeEEEE
Q 018167 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT---------------LIPWDKETVEAS-VRKTGRLLIS 296 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~---------------ikP~d~~~l~~~-~~~~~~ivvv 296 (360)
++|+++|.... +.++.|.+.++++.+||... -.|.|.+.+.+. +.+.+.+++.
T Consensus 1 vvI~G~g~~~~---~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGR---EIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHH---HHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHH---HHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEc
Confidence 45677775443 34455656666677766432 245556666543 4445555555
No 385
>PRK12754 transketolase; Reviewed
Probab=24.03 E-value=7.3e+02 Score=26.69 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC--chHH-HHHcCCCCcEEEe---eCCHHHHHHHHHHh
Q 018167 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS--QSPE-AFFCHVPGLKVVI---PRSPRQAKGLLLSC 197 (360)
Q Consensus 124 ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs--~~d~-a~~r~iPn~~V~~---P~d~~e~~~~l~~a 197 (360)
..+|.+. .++..++ +. -+++.+..+. .-+|++.. .+|+ .-+++. |+.++. =.|..++..+++.+
T Consensus 162 ~~~EA~~-~A~~~kL------~n-Li~ivD~N~~-~idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~a 231 (663)
T PRK12754 162 ISHEVCS-LAGTLKL------GK-LIAFYDDNGI-SIDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEEA 231 (663)
T ss_pred HHHHHHH-HHHHhCC------CC-EEEEEEcCCC-ccCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHHH
Confidence 5677665 4666664 33 2344554443 23444432 3454 445555 776654 33555566666666
Q ss_pred Hh-CCCCEEEeccc
Q 018167 198 IR-DPNPVVFFEPK 210 (360)
Q Consensus 198 ~~-~~~P~~i~~~k 210 (360)
.. .++|++|....
T Consensus 232 ~~~~~~Pt~I~~~T 245 (663)
T PRK12754 232 RAVTDKPSLLMCKT 245 (663)
T ss_pred HhcCCCCEEEEEEe
Confidence 54 47899996543
No 386
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.03 E-value=91 Score=32.26 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=28.3
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
+..+|+||+.|. .-+.||+.|.+.|++|.|+..|.
T Consensus 14 ~~~~VIVIGAGi---aGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 14 KKKKVIVIGAGL---AGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred CCCcEEEECCcH---HHHHHHHHHHHcCCceEEEeccC
Confidence 346899999997 45668999999999999986654
No 387
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.95 E-value=6.6e+02 Score=24.25 Aligned_cols=113 Identities=7% Similarity=0.057 Sum_probs=65.5
Q ss_pred cCCCCcEEEeeCCHHHHHHHHHHhHhC-CCCEEEeccccccccCcccCCCCCcccCCCceEEeeeCCcEEEEEech----
Q 018167 174 CHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGA---- 248 (360)
Q Consensus 174 r~iPn~~V~~P~d~~e~~~~l~~a~~~-~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~---- 248 (360)
....+|.|+.-+...++...+-..+.. -+++-+ ...|++...+.+.. -+ .|+||.||.+..
T Consensus 2 ~~~~~~~i~~g~~~~~La~~ia~~lg~~l~~~~~-----------~~FpdGE~~v~i~~--~v-~g~~V~iiqs~~~p~n 67 (319)
T PRK04923 2 QDQRNLLVFSGNANKPLAQSICKELGVRMGKALV-----------TRFSDGEVQVEIEE--SV-RRQEVFVIQPTCAPSA 67 (319)
T ss_pred CCCCceEEEECCCCHHHHHHHHHHhCCceeeeEE-----------EECCCCCEEEEECC--Cc-CCCeEEEEecCCCCCc
Confidence 455678888877777777766665542 111111 11122221111111 01 378999997532
Q ss_pred -hHHHHHHHHHHHHhcCC-CeeEEEe---------ccc---cCCcHHHHHHHHhc--CCeEEEEeCCC
Q 018167 249 -QLSIMEQACLDAEKEGI-SCELIDL---------KTL---IPWDKETVEASVRK--TGRLLISHEAP 300 (360)
Q Consensus 249 -~~~~al~Aa~~L~~~Gi-~v~Vi~~---------~~i---kP~d~~~l~~~~~~--~~~ivvvEe~~ 300 (360)
..-+.+-.++.|+..|. ++.+|=+ ++- .|+....+.+.+.. ..+++|+|-|+
T Consensus 68 d~lmeLl~~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~~~~isak~va~ll~~~g~d~vitvD~H~ 135 (319)
T PRK04923 68 ENLMELLVLIDALKRASAASVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMISAMGADRVLTVDLHA 135 (319)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccCCCCCccHHHHHHHHHhcCCCEEEEEeCCh
Confidence 24455666777777776 4666622 221 26777777777765 57999999996
No 388
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=23.92 E-value=4.5e+02 Score=24.80 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=20.9
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHhHh----CCCCEEE
Q 018167 175 HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (360)
Q Consensus 175 ~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~i 206 (360)
.+|++.| .-.|+.++...++.|++ .++|++|
T Consensus 189 G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~~P~lI 223 (293)
T cd02000 189 GIPGIRV-DGNDVLAVYEAAKEAVERARAGGGPTLI 223 (293)
T ss_pred CCCEEEE-CCCCHHHHHHHHHHHHHHHHccCCCEEE
Confidence 4565533 33467788777777774 4789998
No 389
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=23.83 E-value=1.5e+02 Score=28.64 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=27.2
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCC-eeEEEeccc
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAEKEGIS-CELIDLKTL 275 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~-v~Vi~~~~i 275 (360)
|+.++||+.|. .++++|..|.+.|.+ +.||..+..
T Consensus 172 g~~vvViG~G~---~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 172 GKKVVVVGAGL---TAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CCEEEEECCCH---HHHHHHHHHHHcCCCeEEEEeecch
Confidence 67899999885 467778777777987 999986553
No 390
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=23.81 E-value=2.9e+02 Score=24.53 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=37.8
Q ss_pred EEEEEechhH--HHHHHHHHHHHhcCCCeeEEEeccccCCcH--HHHHHHHhc--CCeEEEEeCC
Q 018167 241 ITLVGWGAQL--SIMEQACLDAEKEGISCELIDLKTLIPWDK--ETVEASVRK--TGRLLISHEA 299 (360)
Q Consensus 241 v~Iia~G~~~--~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~--~~l~~~~~~--~~~ivvvEe~ 299 (360)
+++++.+..- ....++++.|+++||.+.||.+-+..+=.. +.+.+.+.+ ..+++++-.+
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPG 175 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 5566666332 346688899999999999999988744322 233444432 2567777654
No 391
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=23.72 E-value=1.7e+02 Score=24.60 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=33.1
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcC--CeEEEEe
Q 018167 241 ITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT--GRLLISH 297 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~--~~ivvvE 297 (360)
+++++-|.......+++..|++.|+.+-.|-+.. -|.+.|.+....+ +.++.++
T Consensus 107 iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~~ 162 (164)
T cd01472 107 LVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKN---ADEEELKQIASDPKELYVFNVA 162 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCc---CCHHHHHHHHCCCchheEEecc
Confidence 4555556544344456667777888766665444 3888888777665 3455443
No 392
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=23.61 E-value=96 Score=31.49 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=27.2
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEec
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (360)
.+.+++||+.|. ..+.||..|.+.|.++.|++-.
T Consensus 142 ~~~~VvIIGaGp---AGl~aA~~l~~~G~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGP---AGLAAADQLARAGHKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCH---HHHHHHHHHHhCCCcEEEEecC
Confidence 467999999995 4456777788889999999853
No 393
>PRK13984 putative oxidoreductase; Provisional
Probab=23.57 E-value=91 Score=32.77 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=28.2
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEec
Q 018167 236 REGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (360)
Q Consensus 236 ~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (360)
+.+++++||+.|. ..+.|+..|.+.|+++.|++-.
T Consensus 281 ~~~~~v~IIGaG~---aGl~aA~~L~~~G~~v~vie~~ 315 (604)
T PRK13984 281 KKNKKVAIVGSGP---AGLSAAYFLATMGYEVTVYESL 315 (604)
T ss_pred cCCCeEEEECCCH---HHHHHHHHHHHCCCeEEEEecC
Confidence 4578999999884 6667788888899999999643
No 394
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=23.47 E-value=37 Score=27.79 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=24.6
Q ss_pred eeeCCcEEEEEechhHH--HHHHHHHHHHhcCCCeeEEE
Q 018167 235 IREGSDITLVGWGAQLS--IMEQACLDAEKEGISCELID 271 (360)
Q Consensus 235 l~~G~dv~Iia~G~~~~--~al~Aa~~L~~~Gi~v~Vi~ 271 (360)
+..+.+++||+||.... .--++.+.|++.||.+++.|
T Consensus 55 l~~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~ 93 (117)
T cd05126 55 LEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLP 93 (117)
T ss_pred HhcCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcC
Confidence 44567899999998733 23444557777777765543
No 395
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=23.40 E-value=3.4e+02 Score=22.38 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=35.1
Q ss_pred cEEEEEechhHHHHHHHHH----HHHhc-CCCeeEEEeccccCCcHHHHHHHHh-cCCeEEEE
Q 018167 240 DITLVGWGAQLSIMEQACL----DAEKE-GISCELIDLKTLIPWDKETVEASVR-KTGRLLIS 296 (360)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~----~L~~~-Gi~v~Vi~~~~ikP~d~~~l~~~~~-~~~~ivvv 296 (360)
-++|++.|+--..+.+..+ .+++. ++.+++=-+..-.|--.+.+.+..+ ..++|+++
T Consensus 2 ~lllvgHGSR~~~~~~~~~~la~~l~~~~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVv 64 (125)
T cd03415 2 AIIIITHGSRRNTFNEDMEEWAAYLERKLGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIA 64 (125)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHhccCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEe
Confidence 3689999997666554444 44432 4455444444456766677777665 35778777
No 396
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=23.36 E-value=1e+02 Score=28.91 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=23.5
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccc
Q 018167 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTL 275 (360)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~i 275 (360)
.||+||+-|.. . +.+|..|.+.|+++.|++-..-
T Consensus 2 ~dV~IvGaG~a-G--l~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPA-G--LAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHH-H--HHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHH-H--HHHHHHHHhcccccccchhccc
Confidence 37899998863 2 2355678889999999987543
No 397
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=23.34 E-value=89 Score=35.02 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=27.9
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEec
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (360)
.|++|+||+.|+ ..+.||..|...|.+|+|++-.
T Consensus 305 ~gkkVaVIGsGP---AGLsaA~~Lar~G~~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGP---SGLINAYLLAVEGFPVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCH---HHHHHHHHHHHCCCeEEEEeeC
Confidence 489999999998 3455678888889999999853
No 398
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=23.32 E-value=2.2e+02 Score=22.75 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=33.8
Q ss_pred CcEEEEEechhHHHHHHHHHH-HHhcCCCeeEEEeccccC--CcHHHHHHHHhc
Q 018167 239 SDITLVGWGAQLSIMEQACLD-AEKEGISCELIDLKTLIP--WDKETVEASVRK 289 (360)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~-L~~~Gi~v~Vi~~~~ikP--~d~~~l~~~~~~ 289 (360)
.|+ |-.|+.+..-++-.+. +++.|+.+.+||+.--.| +|.+.+.+.++.
T Consensus 51 ~Dv--Ill~PQi~~~~~~i~~~~~~~~ipv~~I~~~~Y~~~~~~~~~~~~~~~~ 102 (104)
T PRK09590 51 YDL--YLVSPQTKMYFKQFEEAGAKVGKPVVQIPPQAYIPIPMGIEKMAKLILE 102 (104)
T ss_pred CCE--EEEChHHHHHHHHHHHHhhhcCCCEEEeCHHHcCCCccCHHHHHHHHHh
Confidence 454 3446666555555554 445699999999999996 888877766543
No 399
>PRK12831 putative oxidoreductase; Provisional
Probab=23.30 E-value=93 Score=31.62 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=26.5
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEe
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDL 272 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (360)
.+.+++||+.|. ..+.||..|.+.|.++.|++-
T Consensus 139 ~~~~V~IIG~Gp---AGl~aA~~l~~~G~~V~v~e~ 171 (464)
T PRK12831 139 KGKKVAVIGSGP---AGLTCAGDLAKMGYDVTIFEA 171 (464)
T ss_pred CCCEEEEECcCH---HHHHHHHHHHhCCCeEEEEec
Confidence 478999999996 445567777788999999984
No 400
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=23.19 E-value=5.9e+02 Score=25.01 Aligned_cols=108 Identities=13% Similarity=0.180 Sum_probs=58.7
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCee-EEEeccccCCcHHHHHHHHhc-CCeEEEEeCCCcCCchHHHHHHHHH
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCE-LIDLKTLIPWDKETVEASVRK-TGRLLISHEAPVTGGFGAEISASIL 314 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~-Vi~~~~ikP~d~~~l~~~~~~-~~~ivvvEe~~~~GGlgs~v~~~l~ 314 (360)
-|.|++=+|.=.+ ++-+|..+++++ .++- |-|++ ||.....+..+. ..+ +=+--++ =|....+.+.+.
T Consensus 48 aG~dIVRvtv~~~--e~A~A~~~Ik~~-~~vPLVaDiH----f~~rla~~~~~~g~~k-~RINPGN--ig~~~~v~~vVe 117 (361)
T COG0821 48 AGCDIVRVTVPDM--EAAEALKEIKQR-LNVPLVADIH----FDYRLALEAAECGVDK-VRINPGN--IGFKDRVREVVE 117 (361)
T ss_pred cCCCEEEEecCCH--HHHHHHHHHHHh-CCCCEEEEee----ccHHHHHHhhhcCcce-EEECCcc--cCcHHHHHHHHH
Confidence 4788888876653 223344555443 2332 33544 355555555544 222 2332232 345555555443
Q ss_pred HhccccCCCceEEEecCCCCcc-ccccccCCCCHHHHHHHHHHh
Q 018167 315 ERCFLRLEAPVARVCGLDTPFP-LVFEPFYMPTKNKILDAIKST 357 (360)
Q Consensus 315 ~~~~~~l~~~~~~i~~~~~~~~-~~~e~~gl~~~~~I~~~i~~~ 357 (360)
... ....|+ |||...+..+ .++++|+-|++|.+++.+..-
T Consensus 118 ~Ak--~~g~pi-RIGVN~GSLek~~~~ky~~pt~ealveSAl~~ 158 (361)
T COG0821 118 AAK--DKGIPI-RIGVNAGSLEKRLLEKYGGPTPEALVESALEH 158 (361)
T ss_pred HHH--HcCCCE-EEecccCchhHHHHHHhcCCCHHHHHHHHHHH
Confidence 211 113344 7865555543 569999899999999987654
No 401
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=23.16 E-value=2.2e+02 Score=22.17 Aligned_cols=55 Identities=7% Similarity=0.089 Sum_probs=34.1
Q ss_pred EEEEEechhHHHHHHHHHHH----HhcCCCeeEEEecc---ccCCcHHHHHHHHhcCCeEEEEeCC
Q 018167 241 ITLVGWGAQLSIMEQACLDA----EKEGISCELIDLKT---LIPWDKETVEASVRKTGRLLISHEA 299 (360)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L----~~~Gi~v~Vi~~~~---ikP~d~~~l~~~~~~~~~ivvvEe~ 299 (360)
+.|+++|+......-|++.| ++.|+++.|---.. ..+++.+.+ ...+.|+++=+.
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i----~~Ad~vi~~~~~ 63 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDI----AEADAVILAADV 63 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHH----hhCCEEEEecCC
Confidence 46788887766655555554 45698877663333 567776544 345667766544
No 402
>cd06067 H2MP_MemB-H2evol Endopeptidases belonging to membrane-bound hydrogen evolving hydrogenase group. In hydrogenase 3 from E coli, the maturation of the large subunit (HycE) requires the cleavage of a C-terminal peptide by the endopeptidase HycI, before the final formation of the [NiFe] metallocenter. HycI protease is a monomer and lacks characteristic signature motifs of serine, zinc, cysteine, or acid proteases and thus its cleavage reaction is not inhibited by conventional inhibitors of serine and metalloproteases. Such hydrogenases as those from Methanosarcina barkeri (EchCE) and Rhodospirillum rubrum (CooLH) also belong to this group of membrane-bound hydrogen evolving hydrogenase. Sequence comparison of the large subunits from related hydrogenase indicates that in contrast to EchE (358 amino acids) and CooH (361 amino acids), the large subunit HycE (569 amino acids) contains an extra carboxy-terminal stretch of 32 amino acids that is cleaved during the maturation process. In
Probab=23.10 E-value=2.6e+02 Score=23.14 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=28.6
Q ss_pred EEEechhHH----HHHHHHHHHHhcC-CCeeEEEeccccCCcHHHHHHHHh--cCCeEEEEeC
Q 018167 243 LVGWGAQLS----IMEQACLDAEKEG-ISCELIDLKTLIPWDKETVEASVR--KTGRLLISHE 298 (360)
Q Consensus 243 Iia~G~~~~----~al~Aa~~L~~~G-i~v~Vi~~~~ikP~d~~~l~~~~~--~~~~ivvvEe 298 (360)
|+++|+... ....++++|++.. -+++++|..+ -|++. ...+. ++.++|+|+-
T Consensus 2 VlGiGN~L~~DDgvG~~v~~~L~~~~~~~v~vid~gt-~~~~~---~~~l~~~~~d~vIiVDA 60 (136)
T cd06067 2 LLGVGNELRGDDGAGPLLAEKLEDLPNPNWLVIDGGT-VPENF---TGKIREEKPDLIVIVDA 60 (136)
T ss_pred EEEeCccccccCcHHHHHHHHHHhcCCCCEEEEECCC-CHHHH---HHHHHhcCCCEEEEEEC
Confidence 566676542 3556667775542 3577777766 33332 22232 4666777654
No 403
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=22.97 E-value=7e+02 Score=26.72 Aligned_cols=77 Identities=8% Similarity=0.020 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCC--chHH-HHHcCCCCcEEEee---CCHHHHHHHHHH
Q 018167 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS--QSPE-AFFCHVPGLKVVIP---RSPRQAKGLLLS 196 (360)
Q Consensus 123 ~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs--~~d~-a~~r~iPn~~V~~P---~d~~e~~~~l~~ 196 (360)
...+|-+. .++..++ +. -+++++..+. .-++++.. .+++ ..+++. |+.++.- .|..++..+++.
T Consensus 157 G~~~EA~~-~A~~~~L------~n-Li~ivd~N~~-~i~~~~~~~~~~~~~~~~~a~-Gw~~~~v~DG~D~~ai~~A~~~ 226 (653)
T TIGR00232 157 GISYEVAS-LAGHLKL------GK-LIVLYDSNRI-SIDGAVDGSFTEDVAKRFEAY-GWEVLEVEDGHDLAAIDAAIEE 226 (653)
T ss_pred cHHHHHHH-HHHHhCC------Cc-EEEEEeCCCe-eeccccccccCccHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHH
Confidence 35677665 4666553 32 2334554432 22333331 3444 456666 7777765 355566666666
Q ss_pred hHhC-CCCEEEecc
Q 018167 197 CIRD-PNPVVFFEP 209 (360)
Q Consensus 197 a~~~-~~P~~i~~~ 209 (360)
+-+. ++|++|...
T Consensus 227 a~~~~~~P~~I~~~ 240 (653)
T TIGR00232 227 AKASKDKPTLIEVT 240 (653)
T ss_pred HHhCCCCCEEEEEE
Confidence 5554 489999644
No 404
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=22.95 E-value=1.2e+02 Score=28.49 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=26.5
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCCeeEE
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELI 270 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi 270 (360)
.+++++|+-|..+...+..++.|.+.+.++.++
T Consensus 98 ~~~~llIaGGiGiaPl~~l~~~l~~~~~~v~l~ 130 (281)
T PRK06222 98 FGTVVCVGGGVGIAPVYPIAKALKEAGNKVITI 130 (281)
T ss_pred CCeEEEEeCcCcHHHHHHHHHHHHHCCCeEEEE
Confidence 457999999999988888888887777666654
No 405
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=22.91 E-value=2.5e+02 Score=20.34 Aligned_cols=61 Identities=7% Similarity=-0.065 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCCeeEEEeccccCCc--HHHHHHHHhcCCeE-EEEeC-CCcCCchHHHHHHHHHH
Q 018167 251 SIMEQACLDAEKEGISCELIDLKTLIPWD--KETVEASVRKTGRL-LISHE-APVTGGFGAEISASILE 315 (360)
Q Consensus 251 ~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d--~~~l~~~~~~~~~i-vvvEe-~~~~GGlgs~v~~~l~~ 315 (360)
..+.++...|++.|++.+++++. +-+ .+.+.+ +...+++ +.+++ +...-.=.++|+++|.+
T Consensus 11 p~~~kv~~~L~~~gi~y~~~~v~---~~~~~~~~~~~-~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~ 75 (77)
T cd03041 11 PFCRLVREVLTELELDVILYPCP---KGSPKRDKFLE-KGGKVQVPYLVDPNTGVQMFESADIVKYLFK 75 (77)
T ss_pred chHHHHHHHHHHcCCcEEEEECC---CChHHHHHHHH-hCCCCcccEEEeCCCCeEEEcHHHHHHHHHH
Confidence 45677777788889999998874 221 122322 2333444 22332 21222235677777765
No 406
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=22.76 E-value=1.5e+02 Score=27.15 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=29.4
Q ss_pred CCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEE
Q 018167 229 LSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKEGISCELI 270 (360)
Q Consensus 229 ~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi 270 (360)
.|+.....++.++++||.|+.+...+..++.+.+.+.++.++
T Consensus 88 ~G~~~~~~~~~~~lliagG~GiaP~~~~l~~~~~~~~~v~l~ 129 (248)
T cd06219 88 LGKPSEIENYGTVVFVGGGVGIAPIYPIAKALKEAGNRVITI 129 (248)
T ss_pred CCCCeecCCCCeEEEEeCcccHHHHHHHHHHHHHcCCeEEEE
Confidence 444333333467999999998888888788776667666665
No 407
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=22.62 E-value=1.6e+02 Score=26.03 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=25.8
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhcCCCeeEEE
Q 018167 239 SDITLVGWGAQ-LSIMEQACLDAEKEGISCELID 271 (360)
Q Consensus 239 ~dv~Iia~G~~-~~~al~Aa~~L~~~Gi~v~Vi~ 271 (360)
++++|..+|+. ...+.+..+.|.+.|.++.||=
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~~~g~~V~vv~ 35 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLTKRGYQVTVLM 35 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45777778864 5778888999988898888773
No 408
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=22.59 E-value=3.8e+02 Score=22.97 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHH-hcCCCeeEEEeccccC-C-----------cHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHH
Q 018167 250 LSIMEQACLDAE-KEGISCELIDLKTLIP-W-----------DKETVEASVRKTGRLLISHEAPVTGGFGAEISASIL 314 (360)
Q Consensus 250 ~~~al~Aa~~L~-~~Gi~v~Vi~~~~ikP-~-----------d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~ 314 (360)
...+..+++.+. +.|.+++++|+.-+.| + +.+.+.+.+...+.+|++-- ...|++.+.+..++-
T Consensus 16 ~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP-~Y~~s~~~~LKn~lD 92 (174)
T TIGR03566 16 LALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSP-VYRGSYTGLFKHLFD 92 (174)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECC-cCcCcCcHHHHHHHH
Confidence 334444555555 4489999999876531 1 12346677777887766643 235777766666553
No 409
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=22.57 E-value=2.7e+02 Score=24.19 Aligned_cols=60 Identities=17% Similarity=0.327 Sum_probs=36.6
Q ss_pred chhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHH
Q 018167 247 GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILE 315 (360)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~ 315 (360)
|++-..|...++.|.. |++++++++....+. .+..+..||+- -....|.+...+..++.+
T Consensus 12 G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~-------~l~~yD~vIlG-spi~~G~~~~~~~~fl~~ 71 (177)
T PRK11104 12 GQTRKIASYIASELKE-GIQCDVVNLHRIEEP-------DLSDYDRVVIG-ASIRYGHFHSALYKFVKK 71 (177)
T ss_pred ChHHHHHHHHHHHhCC-CCeEEEEEhhhcCcc-------CHHHCCEEEEE-CccccCCcCHHHHHHHHH
Confidence 5555556666777766 888888887764432 23446665443 333456776666666644
No 410
>PRK05920 aromatic acid decarboxylase; Validated
Probab=22.53 E-value=1.6e+02 Score=26.65 Aligned_cols=33 Identities=15% Similarity=-0.078 Sum_probs=25.2
Q ss_pred CCcEEEEEechh-HHHHHHHHHHHHhcCCCeeEE
Q 018167 238 GSDITLVGWGAQ-LSIMEQACLDAEKEGISCELI 270 (360)
Q Consensus 238 G~dv~Iia~G~~-~~~al~Aa~~L~~~Gi~v~Vi 270 (360)
++.++|.-+|+. ...+.+..+.|.+.|.++.||
T Consensus 3 ~krIllgITGsiaa~ka~~lvr~L~~~g~~V~vi 36 (204)
T PRK05920 3 MKRIVLAITGASGAIYGVRLLECLLAADYEVHLV 36 (204)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 456777777764 577888888888889888877
No 411
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.51 E-value=2e+02 Score=27.40 Aligned_cols=51 Identities=8% Similarity=0.174 Sum_probs=34.2
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEE
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLI 295 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivv 295 (360)
+|++++||+.|..+..-+ +..|..+|..+.+.+-++ ..+.+.+++..-||+
T Consensus 157 ~Gk~vvVIGrs~~VG~pl--a~lL~~~gatVtv~~s~t------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPV--SKLLLQKNASVTILHSRS------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCEEEEECCCchhHHHH--HHHHHHCCCeEEEEeCCc------hhHHHHHhhCCEEEE
Confidence 467899999988776654 456667788888887665 235555666664443
No 412
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=22.50 E-value=1.1e+02 Score=31.15 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=25.3
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEecc
Q 018167 239 SDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKT 274 (360)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (360)
.||+||+-|. ..++||-.|.+.|++|.|++++.
T Consensus 3 ~dVvVIGGGl---AGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGL---AGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCH---HHHHHHHHHHhCCCcEEEEEccC
Confidence 5899999885 33456667778899999999743
No 413
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=22.47 E-value=98 Score=24.31 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=20.8
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEE
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELI 270 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi 270 (360)
+++.+++++.+..-..+..++..|++.|+++.++
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l 96 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEM 96 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEe
Confidence 4556777765442234566777888888865433
No 414
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=22.31 E-value=1.1e+02 Score=26.27 Aligned_cols=34 Identities=9% Similarity=0.178 Sum_probs=25.1
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEec
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (360)
+|+.++||+.|.... .-++.|.+.|.++.||+..
T Consensus 12 ~~~~vlVvGGG~va~---rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAY---RKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHH---HHHHHHHhCCCEEEEEcCc
Confidence 678899999887543 3445666789999999743
No 415
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=22.24 E-value=9e+02 Score=25.16 Aligned_cols=129 Identities=7% Similarity=-0.078 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCCC---EEEEcCCCCCCCccccchhHHH---HhCCCcEEechhHHHHHHHHHHHHhcCCCeeEEEecCc
Q 018167 46 INQALHIALETDPR---AYVFGEDVGFGGVFRCTTGLAD---RFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFA 119 (360)
Q Consensus 46 ~~~~L~~l~~~~~~---vv~i~~Dl~~g~~~~~~~~~~~---~~gp~r~i~~GIaE~~~vg~AaGlA~~G~~p~~~~~f~ 119 (360)
+.+.+.+++.+.++ +.+...|+..+ .....+ .-|.|-+|.-| |.|.=+-..--.|++++..+
T Consensus 15 l~~~~~~i~~~~~~~~~~~v~~~~~~~~-----~~~a~~~~~~~~~dviIsrG-------~ta~~i~~~~~iPVv~i~~s 82 (526)
T TIGR02329 15 LFDLFRDIAPEFDHRANITPIQLGFEDA-----VREIRQRLGAERCDVVVAGG-------SNGAYLKSRLSLPVIVIKPT 82 (526)
T ss_pred HHHHHHHHHHhCCCCceEEEEeccHHHH-----HHHHHHHHHhCCCcEEEECc-------hHHHHHHHhCCCCEEEecCC
Confidence 66777777776544 78877776522 122212 22468888888 66666666667999999777
Q ss_pred cc-HHHHHHHHHHHHHhcccccCCCccccceEEEcCCCCCCCCCCCCCchHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q 018167 120 DY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCI 198 (360)
Q Consensus 120 ~F-~~ra~dQi~~~~a~~~~~~~~~~~v~~~v~~~~~g~~g~~g~~Hs~~d~a~~r~iPn~~V~~P~d~~e~~~~l~~a~ 198 (360)
.| +.|++.+.++ |.. .+ .+| + ....+.....+.-+-.++ +.++.-.+.+|+..+++.+.
T Consensus 83 ~~Dil~al~~a~~------~~~----~i-a~v--g------~~~~~~~~~~~~~ll~~~-i~~~~~~~~~e~~~~~~~l~ 142 (526)
T TIGR02329 83 GFDVMQALARARR------IAS----SI-GVV--T------HQDTPPALRRFQAAFNLD-IVQRSYVTEEDARSCVNDLR 142 (526)
T ss_pred hhhHHHHHHHHHh------cCC----cE-EEE--e------cCcccHHHHHHHHHhCCc-eEEEEecCHHHHHHHHHHHH
Confidence 76 5777766543 211 22 222 2 222233233344444554 88999999999999999888
Q ss_pred hCCCCEEE
Q 018167 199 RDPNPVVF 206 (360)
Q Consensus 199 ~~~~P~~i 206 (360)
+..--++|
T Consensus 143 ~~G~~~vi 150 (526)
T TIGR02329 143 ARGIGAVV 150 (526)
T ss_pred HCCCCEEE
Confidence 75444444
No 416
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=22.23 E-value=1.3e+02 Score=24.91 Aligned_cols=32 Identities=13% Similarity=0.319 Sum_probs=23.9
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCC-eeEEE
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGIS-CELID 271 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~-v~Vi~ 271 (360)
+++.++||+.|.+...+. ..|.+.|.+ +.|++
T Consensus 11 ~~~~vlviGaGg~ar~v~---~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVA---AALAALGAKEITIVN 43 (135)
T ss_dssp TTSEEEEESSSHHHHHHH---HHHHHTTSSEEEEEE
T ss_pred CCCEEEEECCHHHHHHHH---HHHHHcCCCEEEEEE
Confidence 367899999998776654 445566887 88887
No 417
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=22.22 E-value=1.5e+02 Score=26.62 Aligned_cols=36 Identities=17% Similarity=0.029 Sum_probs=26.9
Q ss_pred eCCcEEEEEechh-HHH-HHHHHHHHHhcCCCeeEEEe
Q 018167 237 EGSDITLVGWGAQ-LSI-MEQACLDAEKEGISCELIDL 272 (360)
Q Consensus 237 ~G~dv~Iia~G~~-~~~-al~Aa~~L~~~Gi~v~Vi~~ 272 (360)
+|+.+++--+|+. ... +.+.++.|.+.|.+|.||=-
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T 41 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVS 41 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEEC
Confidence 4667777777765 455 58888999888999888743
No 418
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.18 E-value=1.5e+02 Score=28.49 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=34.9
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEE
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLIS 296 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvv 296 (360)
+|+++++|+.|..+...+ +..|.++|..+.|.|-++- .+.+.+++.+-||+.
T Consensus 158 ~Gk~V~vIG~s~ivG~Pm--A~~L~~~gatVtv~~~~t~------~l~e~~~~ADIVIsa 209 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPM--AALLLQAHCSVTVVHSRST------DAKALCRQADIVVAA 209 (301)
T ss_pred CCCEEEEECCCCccHHHH--HHHHHHCCCEEEEECCCCC------CHHHHHhcCCEEEEe
Confidence 478899999986666554 3456677999988876652 345556666654444
No 419
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=22.13 E-value=4.3e+02 Score=25.76 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=21.4
Q ss_pred HHHHcCCCCcEEEeeCCHHHHHHH----HHHhHhCCCCEEE
Q 018167 170 EAFFCHVPGLKVVIPRSPRQAKGL----LLSCIRDPNPVVF 206 (360)
Q Consensus 170 ~a~~r~iPn~~V~~P~d~~e~~~~----l~~a~~~~~P~~i 206 (360)
.+-.-.+|++.|= =.|..++... ++.+.+.++|++|
T Consensus 215 ~a~a~G~~~~~Vd-g~d~~av~~a~~~A~~~ar~~~gP~lI 254 (341)
T CHL00149 215 KAEAFGLPGIEVD-GMDVLAVREVAKEAVERARQGDGPTLI 254 (341)
T ss_pred HHHhCCCCEEEEe-CCCHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 3333468888663 3455555544 4444455899998
No 420
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=22.05 E-value=64 Score=27.23 Aligned_cols=87 Identities=15% Similarity=0.107 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccccCCCceEEEe-----
Q 018167 255 QACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFLRLEAPVARVC----- 329 (360)
Q Consensus 255 ~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~----- 329 (360)
.|++.|++.|++..= +.=++++.+.+ .....||+++++.. +.+.+..- ....++..++
T Consensus 48 ~a~~~l~~~Gid~~~---h~s~~lt~~~~----~~~DlIl~M~~~~~-----~~l~~~~p-----~~~~k~~~l~~~~~~ 110 (144)
T PRK11391 48 TAADVAANHGVSLEG---HAGRKLTAEMA----RNYDLILAMESEHI-----AQVTAIAP-----EVRGKTMLFGQWLEQ 110 (144)
T ss_pred HHHHHHHHcCCCcCC---CccCcCCHHHH----hhCCEEEECCHHHH-----HHHHHHCC-----CCcCeEEehhHhCCC
Confidence 455567777887532 33356665543 35788999876431 12211110 0122332221
Q ss_pred -cCCCCccccccccCCCCHHHHHHHHHHhhh
Q 018167 330 -GLDTPFPLVFEPFYMPTKNKILDAIKSTVN 359 (360)
Q Consensus 330 -~~~~~~~~~~e~~gl~~~~~I~~~i~~~l~ 359 (360)
..++|+..-.+.|.- ..+.|.++++.+++
T Consensus 111 ~~I~DPy~~~~~~f~~-~~~~I~~~i~~ll~ 140 (144)
T PRK11391 111 KEIPDPYRKSQDAFEH-VYGMLERASQEWAK 140 (144)
T ss_pred CCCCCCccCCHHHHHH-HHHHHHHHHHHHHH
Confidence 234565444555555 66778777777664
No 421
>PHA03050 glutaredoxin; Provisional
Probab=21.97 E-value=4.1e+02 Score=21.13 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=42.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCC---CeeEEEeccccCCcHH---HHHHHHhc-CCeEEEEeCCCcCCchHHHHH
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAEKEGI---SCELIDLKTLIPWDKE---TVEASVRK-TGRLLISHEAPVTGGFGAEIS 310 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi---~v~Vi~~~~ikP~d~~---~l~~~~~~-~~~ivvvEe~~~~GGlgs~v~ 310 (360)
.++|+|.+.-. -..|..|.+.|++.|+ +.+++|+....+ +.+ .+.+.-.+ +-..|++.. ...||.....+
T Consensus 12 ~~~V~vys~~~-CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~-~~~~~~~l~~~tG~~tVP~IfI~g-~~iGG~ddl~~ 88 (108)
T PHA03050 12 NNKVTIFVKFT-CPFCRNALDILNKFSFKRGAYEIVDIKEFKP-ENELRDYFEQITGGRTVPRIFFGK-TSIGGYSDLLE 88 (108)
T ss_pred cCCEEEEECCC-ChHHHHHHHHHHHcCCCcCCcEEEECCCCCC-CHHHHHHHHHHcCCCCcCEEEECC-EEEeChHHHHH
Confidence 46788887665 5567788888988898 788999885322 222 23222111 223455543 45799866544
No 422
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=21.96 E-value=5e+02 Score=24.18 Aligned_cols=117 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred eeeCCcEEEEEechhHHHHHHHHHHHHhc--CCCeeEEEeccc------------------cCCcH--HHHHHHHhcCCe
Q 018167 235 IREGSDITLVGWGAQLSIMEQACLDAEKE--GISCELIDLKTL------------------IPWDK--ETVEASVRKTGR 292 (360)
Q Consensus 235 l~~G~dv~Iia~G~~~~~al~Aa~~L~~~--Gi~v~Vi~~~~i------------------kP~d~--~~l~~~~~~~~~ 292 (360)
..+|.++..++..+.+.-..+.+....++ ++++.|||-+++ +.+++ +.+.+...++.-
T Consensus 75 ~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~v~~a~~~~~~G~s~~eI~~~l~~~~~~~~~ 154 (275)
T TIGR00762 75 LEEGDEVLSIHLSSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGLLVLEAAKLAEEGKSLEEILAKLEELRERTKL 154 (275)
T ss_pred HhCCCeEEEEEcCCchhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcEE
Q ss_pred EEEEeC--CCcCCchHHHHHHHHHHhccccCCCceEEEecCCCCccccccccCCCCHHHHHHHHHHhhh
Q 018167 293 LLISHE--APVTGGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKSTVN 359 (360)
Q Consensus 293 ivvvEe--~~~~GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~~~~e~~gl~~~~~I~~~i~~~l~ 359 (360)
.+++++ +-..||==+.++..+.. -.+++.+...++-.-...++.- +.++.++++.+.++
T Consensus 155 ~f~v~~L~~L~~gGRis~~~~~~g~------lL~ikPIi~~~~G~i~~~~k~R--g~kka~~~l~~~~~ 215 (275)
T TIGR00762 155 YFVVDTLEYLVKGGRISKAAALIGS------LLNIKPILTVDDGKLVPIEKVR--GRKKAIKKLVELVK 215 (275)
T ss_pred EEEECcHHHHHhcCCccHHHHHHHH------hhcceeEEEEeCCEEEEeeccc--cHHHHHHHHHHHHH
No 423
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=21.66 E-value=5.6e+02 Score=24.59 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEE-----EeCCCcCCchHHHHHHHHHHh
Q 018167 256 ACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLI-----SHEAPVTGGFGAEISASILER 316 (360)
Q Consensus 256 Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivv-----vEe~~~~GGlgs~v~~~l~~~ 316 (360)
.++.|.+.||++++|-- .++...+++.+++++ .+++....-.|+...+.++..
T Consensus 163 ~a~~L~~~GI~vtlI~D--------sav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~ 220 (310)
T PRK08535 163 TAKELAEYGIPVTLIVD--------SAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHE 220 (310)
T ss_pred HHHHHHHCCCCEEEEeh--------hHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHH
Confidence 45678888999988843 233444566666654 234433344577776666654
No 424
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=21.52 E-value=4.7e+02 Score=25.79 Aligned_cols=106 Identities=6% Similarity=-0.040 Sum_probs=56.7
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhccc
Q 018167 240 DITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKTGRLLISHEAPVTGGFGAEISASILERCFL 319 (360)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~~~ 319 (360)
.+.|++.|.......+.++ +.|++ .++-+. ..++.+.+.+.++..+-.+........-|++..+.|+++-
T Consensus 271 ~l~ivG~G~~~~~l~~~~~---~~~l~-~~~~~~--g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~---- 340 (415)
T cd03816 271 LCIITGKGPLKEKYLERIK---ELKLK-KVTIRT--PWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGC---- 340 (415)
T ss_pred EEEEEecCccHHHHHHHHH---HcCCC-cEEEEc--CcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHc----
Confidence 4567777775544444333 34554 233221 2346777777777776544333322223588888887753
Q ss_pred cCCCceEEEecCCCCccccccc--cCC--CCHHHHHHHHHHhhh
Q 018167 320 RLEAPVARVCGLDTPFPLVFEP--FYM--PTKNKILDAIKSTVN 359 (360)
Q Consensus 320 ~l~~~~~~i~~~~~~~~~~~e~--~gl--~~~~~I~~~i~~~l~ 359 (360)
..|+... ... ..+++.++ .|+ +|++.+.+++.++++
T Consensus 341 --G~PVI~s-~~~-~~~eiv~~~~~G~lv~d~~~la~~i~~ll~ 380 (415)
T cd03816 341 --GLPVCAL-DFK-CIDELVKHGENGLVFGDSEELAEQLIDLLS 380 (415)
T ss_pred --CCCEEEe-CCC-CHHHHhcCCCCEEEECCHHHHHHHHHHHHh
Confidence 3455321 111 22333221 222 388999999988764
No 425
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=21.50 E-value=3.5e+02 Score=23.10 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=19.5
Q ss_pred EEEechhHHHHHHHHHHHHhc--CCCeeEEEeccc
Q 018167 243 LVGWGAQLSIMEQACLDAEKE--GISCELIDLKTL 275 (360)
Q Consensus 243 Iia~G~~~~~al~Aa~~L~~~--Gi~v~Vi~~~~i 275 (360)
+|.|+++.....++|+.+.+. +..++++++...
T Consensus 3 ~IiY~S~tGnTe~vA~~Ia~~l~~~~~~i~~~~~~ 37 (167)
T TIGR01752 3 GIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIAKA 37 (167)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCceEEEEcccC
Confidence 445666666666666666443 234667766554
No 426
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=21.38 E-value=99 Score=29.02 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=22.5
Q ss_pred cEEEEEechh-HHHHHHHHHHHHhcCCCeeEEEec
Q 018167 240 DITLVGWGAQ-LSIMEQACLDAEKEGISCELIDLK 273 (360)
Q Consensus 240 dv~Iia~G~~-~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (360)
|++||+-|.. +.. |-.|.+.|.+|.|++-.
T Consensus 1 DvvIIGaGi~G~~~----A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLST----AYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHH----HHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHH----HHHHHHCCCeEEEEeec
Confidence 7899998874 333 44566689999999877
No 427
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=21.38 E-value=3.3e+02 Score=24.29 Aligned_cols=27 Identities=15% Similarity=-0.026 Sum_probs=21.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcC
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAEKEG 264 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~~~G 264 (360)
.+++++||.|+.+...+..++.+.+++
T Consensus 108 ~~~~vliagGtGiaP~~~~l~~~~~~~ 134 (236)
T cd06210 108 LRPRWFVAGGTGLAPLLSMLRRMAEWG 134 (236)
T ss_pred CccEEEEccCcchhHHHHHHHHHHhcC
Confidence 357999999998888888888776544
No 428
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=21.38 E-value=5.7e+02 Score=22.56 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=54.8
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcC--CCeeEE-EeccccC-CcHHHHHHHHhcCCeE---EEEeC--CCcCCchHHH
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAEKEG--ISCELI-DLKTLIP-WDKETVEASVRKTGRL---LISHE--APVTGGFGAE 308 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~~~G--i~v~Vi-~~~~ikP-~d~~~l~~~~~~~~~i---vvvEe--~~~~GGlgs~ 308 (360)
++.+++||.|+.+...+..++.+.+++ .++.++ ..++..- +-.+.+.+..++..++ +++.+ ....|. ...
T Consensus 98 ~~~ivliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~g~-~g~ 176 (224)
T cd06189 98 DRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGARTEEDLYLDELLEAWAEAHPNFTYVPVLSEPEEGWQGR-TGL 176 (224)
T ss_pred CCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhhccCHHHHHHHHHhCCCeEEEEEeCCCCcCCccc-ccc
Confidence 568999999999888888888776554 455554 2233211 2234455554443332 23322 111221 122
Q ss_pred HHHHHHHhccccCCCceEEEecCCCCc---cccccccCCCCHHHHH
Q 018167 309 ISASILERCFLRLEAPVARVCGLDTPF---PLVFEPFYMPTKNKIL 351 (360)
Q Consensus 309 v~~~l~~~~~~~l~~~~~~i~~~~~~~---~~~~e~~gl~~~~~I~ 351 (360)
+.+.+.+.. .........+||++.-. ...++..|+ ++++|.
T Consensus 177 v~~~l~~~~-~~~~~~~v~vCGp~~m~~~~~~~l~~~G~-~~~~i~ 220 (224)
T cd06189 177 VHEAVLEDF-PDLSDFDVYACGSPEMVYAARDDFVEKGL-PEENFF 220 (224)
T ss_pred HHHHHHhhc-cCccccEEEEECCHHHHHHHHHHHHHcCC-CHHHcc
Confidence 333333221 00112234556655422 234677888 777764
No 429
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=21.18 E-value=3.4e+02 Score=24.94 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=45.2
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCCEEEeccccccccCcccCCCCCcccCCCceEEeeeCCcEEEEEechhHHHHHHHHHH
Q 018167 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLD 259 (360)
Q Consensus 180 ~V~~P~d~~e~~~~l~~a~~~~~P~~i~~~k~l~r~~~~~v~~~~~~~~~Gk~~vl~~G~dv~Iia~G~~~~~al~Aa~~ 259 (360)
.|+.|.||++++.+-.. + +++..+..+ | .+.+-.|. -+|.+++++++|.....|--++++
T Consensus 14 ~vi~~Gdp~r~~~ia~~-l--~~~~~~~~~----r---------~~~~~~G~----~~g~~v~v~~~GiG~~~aai~~~e 73 (245)
T TIGR01718 14 YVILPGDPDRVEKIAAH-M--DKPVKVASN----R---------EFVTYRGE----LDGKPVIVCSTGIGGPSTAIAVEE 73 (245)
T ss_pred eEEecCCHHHHHHHHHh-c--CCcEEEecc----C---------CEEEEEEE----ECCEEEEEEcCCCCHHHHHHHHHH
Confidence 59999999999877553 3 333333111 1 11111122 268899999999887776667777
Q ss_pred HHhcCCCeeEEEecc
Q 018167 260 AEKEGISCELIDLKT 274 (360)
Q Consensus 260 L~~~Gi~v~Vi~~~~ 274 (360)
|-+.|.+. +|++-+
T Consensus 74 Li~~g~~~-iIr~Gt 87 (245)
T TIGR01718 74 LAQLGART-FIRVGT 87 (245)
T ss_pred HHHhCCCE-EEEeec
Confidence 76666653 554443
No 430
>PRK12831 putative oxidoreductase; Provisional
Probab=21.17 E-value=2.3e+02 Score=28.74 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=31.5
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEeccccCCc
Q 018167 236 REGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWD 279 (360)
Q Consensus 236 ~~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d 279 (360)
..|++++||+.|. .++++|..|...|.+|+++..+.-..++
T Consensus 279 ~~gk~VvVIGgG~---va~d~A~~l~r~Ga~Vtlv~r~~~~~m~ 319 (464)
T PRK12831 279 KVGKKVAVVGGGN---VAMDAARTALRLGAEVHIVYRRSEEELP 319 (464)
T ss_pred cCCCeEEEECCcH---HHHHHHHHHHHcCCEEEEEeecCcccCC
Confidence 3578999999996 5777788887789999999877643333
No 431
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=21.10 E-value=1.9e+02 Score=20.39 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCCeeEEEeccc
Q 018167 252 IMEQACLDAEKEGISCELIDLKTL 275 (360)
Q Consensus 252 ~al~Aa~~L~~~Gi~v~Vi~~~~i 275 (360)
.+.++.-.|++.|++.+++++..-
T Consensus 11 ~~~~v~~~l~~~gi~~e~~~i~~~ 34 (74)
T cd03045 11 PCRAVLLTAKALGLELNLKEVNLM 34 (74)
T ss_pred cHHHHHHHHHHcCCCCEEEEecCc
Confidence 345555567788999988876543
No 432
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=21.03 E-value=6.6e+02 Score=23.13 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=40.1
Q ss_pred cccCCcHHHHHHHHhcCCeEEEEeCCCcC------CchHHHHHHHHHHhccccCCCceEEEecCCCCcccccccc--CC-
Q 018167 274 TLIPWDKETVEASVRKTGRLLISHEAPVT------GGFGAEISASILERCFLRLEAPVARVCGLDTPFPLVFEPF--YM- 344 (360)
Q Consensus 274 ~ikP~d~~~l~~~~~~~~~ivvvEe~~~~------GGlgs~v~~~l~~~~~~~l~~~~~~i~~~~~~~~~~~e~~--gl- 344 (360)
..-+.+.+.+.+.++..+- ++.- +.. -|++..+.++++- ..|+.. ......++..+.. |+
T Consensus 240 ~~g~~~~~~l~~~~~~adi-~l~~--s~~~~~~~~e~~~~~~~Ea~a~------G~Pvi~--~~~~~~~~~i~~~~~g~~ 308 (355)
T cd03799 240 LLGAKSQEEVRELLRAADL-FVLP--SVTAADGDREGLPVVLMEAMAM------GLPVIS--TDVSGIPELVEDGETGLL 308 (355)
T ss_pred ECCcCChHHHHHHHHhCCE-EEec--ceecCCCCccCccHHHHHHHHc------CCCEEe--cCCCCcchhhhCCCceEE
Confidence 3445556667777777663 3331 122 5678888887753 345532 1111222322221 21
Q ss_pred --C-CHHHHHHHHHHhhh
Q 018167 345 --P-TKNKILDAIKSTVN 359 (360)
Q Consensus 345 --~-~~~~I~~~i~~~l~ 359 (360)
+ |++++++++.++++
T Consensus 309 ~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 309 VPPGDPEALADAIERLLD 326 (355)
T ss_pred eCCCCHHHHHHHHHHHHh
Confidence 1 78889888887753
No 433
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=20.97 E-value=3.3e+02 Score=29.10 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=40.0
Q ss_pred ceEEEcCCCCCCCCCCCC-C-chHHHH-HcCCCCcEEEeeC---CHHHHHHHHHHhHh-CCCCEEEeccccc
Q 018167 148 GLTVRAPYGAVGHGGHYH-S-QSPEAF-FCHVPGLKVVIPR---SPRQAKGLLLSCIR-DPNPVVFFEPKWL 212 (360)
Q Consensus 148 ~~v~~~~~g~~g~~g~~H-s-~~d~a~-~r~iPn~~V~~P~---d~~e~~~~l~~a~~-~~~P~~i~~~k~l 212 (360)
++|+..+.-...-+|.+. + .||..- +.+. |+.|+.-. |.++...++++|-. .++|++|.....+
T Consensus 179 kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAy-GW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPtlI~~kTiI 249 (663)
T COG0021 179 KLIVLYDSNDISIDGDTSLSFTEDVAKRFEAY-GWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIVKTII 249 (663)
T ss_pred cEEEEEeCCCceeccCcccccchhHHHHHHhc-CCeEEEecCCCCHHHHHHHHHHHHhcCCCCeEEEEEeee
Confidence 566555444444555555 4 666643 4443 77777444 57788888888887 5799999544333
No 434
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.96 E-value=1.3e+02 Score=30.54 Aligned_cols=60 Identities=17% Similarity=0.090 Sum_probs=39.2
Q ss_pred eCCcEEEEEechhH-HHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhc-CCeEEEEeCC
Q 018167 237 EGSDITLVGWGAQL-SIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRK-TGRLLISHEA 299 (360)
Q Consensus 237 ~G~dv~Iia~G~~~-~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~-~~~ivvvEe~ 299 (360)
...||.|++.|... ..|++.++.|++.|+++++--... .+ .+.+...-+. ..-+|++-|.
T Consensus 334 ~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r--~~-k~q~k~A~~~g~~~~viiGe~ 395 (429)
T COG0124 334 TRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGR--KL-KKQFKYADKLGARFAVILGED 395 (429)
T ss_pred CCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEeccc--cH-HHHHHHHHHCCCCEEEEEcch
Confidence 35689999999886 889999999999999987764333 22 2333332222 3455666443
No 435
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=20.87 E-value=1.7e+02 Score=25.73 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=23.2
Q ss_pred cEEEEEechh-HHHHHHHHHHHHhcCCCeeEE
Q 018167 240 DITLVGWGAQ-LSIMEQACLDAEKEGISCELI 270 (360)
Q Consensus 240 dv~Iia~G~~-~~~al~Aa~~L~~~Gi~v~Vi 270 (360)
++++..+|+. +..+.+..+.|.+.|.++.||
T Consensus 2 ~I~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi 33 (177)
T TIGR02113 2 KILLAVTGSIAAYKAADLTSQLTKLGYDVTVL 33 (177)
T ss_pred EEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4666677764 567778888888888888777
No 436
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=20.81 E-value=1.1e+02 Score=32.69 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=27.2
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEEec
Q 018167 237 EGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLK 273 (360)
Q Consensus 237 ~G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (360)
.|++|+||+.|.. .+.||..|...|.++.|++-.
T Consensus 326 ~~~~VaIIGaGpA---GLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPA---GLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHH---HHHHHHHHHHCCCeEEEEecC
Confidence 5789999999984 345667787889999999853
No 437
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=20.68 E-value=1e+02 Score=28.57 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=25.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCCeeEEE
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAEKEGISCELID 271 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~ 271 (360)
..||+|++-|+. -|.||..|.+.|.++.|+-
T Consensus 30 esDViIVGaGPs---GLtAAyyLAk~g~kV~i~E 60 (262)
T COG1635 30 ESDVIIVGAGPS---GLTAAYYLAKAGLKVAIFE 60 (262)
T ss_pred hccEEEECcCcc---hHHHHHHHHhCCceEEEEE
Confidence 479999999984 4567888988999998885
No 438
>PRK14012 cysteine desulfurase; Provisional
Probab=20.67 E-value=4.4e+02 Score=25.83 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=14.1
Q ss_pred cCCcHHHHHHHHhcCCeEEEEeCC
Q 018167 276 IPWDKETVEASVRKTGRLLISHEA 299 (360)
Q Consensus 276 kP~d~~~l~~~~~~~~~ivvvEe~ 299 (360)
.+.|.+.|.+.+++++-++++|+.
T Consensus 159 ~~~~~~~I~~la~~~g~~vivD~a 182 (404)
T PRK14012 159 VIQDIAAIGEICRERGIIFHVDAA 182 (404)
T ss_pred chhhHHHHHHHHHHcCCEEEEEcc
Confidence 445666777777666545545444
No 439
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=20.42 E-value=3.8e+02 Score=22.21 Aligned_cols=46 Identities=11% Similarity=0.196 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHhcC-CeEEEEeC
Q 018167 251 SIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVRKT-GRLLISHE 298 (360)
Q Consensus 251 ~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~~~-~~ivvvEe 298 (360)
..+.++++.+++.|+.+-+|.+- .+.+.+.+.+.++.+ ++.+.+++
T Consensus 116 ~~~~~~~~~~~~~~v~i~~i~~g--~~~~~~~l~~ia~~~~g~~~~~~~ 162 (170)
T cd01465 116 DELARLVAQKRESGITLSTLGFG--DNYNEDLMEAIADAGNGNTAYIDN 162 (170)
T ss_pred HHHHHHHHHhhcCCeEEEEEEeC--CCcCHHHHHHHHhcCCceEEEeCC
Confidence 44555666666778888888887 678888887777654 45555544
No 440
>PRK02948 cysteine desulfurase; Provisional
Probab=20.42 E-value=3.2e+02 Score=26.37 Aligned_cols=22 Identities=18% Similarity=0.074 Sum_probs=13.8
Q ss_pred CcHHHHHHHHhcCCeEEEEeCC
Q 018167 278 WDKETVEASVRKTGRLLISHEA 299 (360)
Q Consensus 278 ~d~~~l~~~~~~~~~ivvvEe~ 299 (360)
.|.+.|.+.+++++.++++|+.
T Consensus 155 ~~~~~I~~l~~~~~~~vivD~~ 176 (381)
T PRK02948 155 QPIAEIGALLKKYNVLFHSDCV 176 (381)
T ss_pred hhHHHHHHHHHHcCCEEEEECh
Confidence 4556677777766656666653
No 441
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=20.39 E-value=3e+02 Score=27.62 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=29.0
Q ss_pred eCCcEEEEEe-----chhHHHHHHHHHHHHhcCCCeeEEEeccccCCcH
Q 018167 237 EGSDITLVGW-----GAQLSIMEQACLDAEKEGISCELIDLKTLIPWDK 280 (360)
Q Consensus 237 ~G~dv~Iia~-----G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~ 280 (360)
+|.+++|+.. |.....+...+..+..-|.++.++.++.+.|.+.
T Consensus 186 ~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~ 234 (395)
T PRK07200 186 KGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPE 234 (395)
T ss_pred CCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHH
Confidence 4667888764 5444333333444455699999999998887664
No 442
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=20.33 E-value=90 Score=28.13 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCCeEEEEeCCCcCCchHHHHHHHHHHhc
Q 018167 280 KETVEASVRKTGRLLISHEAPVTGGFGAEISASILERC 317 (360)
Q Consensus 280 ~~~l~~~~~~~~~ivvvEe~~~~GGlgs~v~~~l~~~~ 317 (360)
.+.+...++....+++.+... .+ ..+++.|.+.+
T Consensus 145 ~~~l~~~~~~~~~~vi~~~~~---~~-~~i~~~L~~~g 178 (229)
T TIGR01465 145 GEKLADLAKHGATMAIFLSAH---IL-DKVVKELIEGG 178 (229)
T ss_pred hHHHHHHhcCCCeEEEECcHH---HH-HHHHHHHHHcC
Confidence 344655555455667776542 23 66777777754
No 443
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=20.28 E-value=2.5e+02 Score=24.98 Aligned_cols=27 Identities=11% Similarity=0.056 Sum_probs=20.7
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcC
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAEKEG 264 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~~~G 264 (360)
...+++||.|+.+...+..++.+.+.+
T Consensus 103 ~~~~vlIagG~Giap~~~~l~~~~~~~ 129 (231)
T cd06215 103 ADKLLLLSAGSGITPMMSMARWLLDTR 129 (231)
T ss_pred CCcEEEEecCcCcchHHHHHHHHHhcC
Confidence 468999999998877777777765554
No 444
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=20.27 E-value=2.2e+02 Score=28.43 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=62.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHH---hcC-CCeeEEEeccccCCcHHH---HH------HHHhcCCeEEEEeCCCcCCc
Q 018167 238 GSDITLVGWGAQLSIMEQACLDAE---KEG-ISCELIDLKTLIPWDKET---VE------ASVRKTGRLLISHEAPVTGG 304 (360)
Q Consensus 238 G~dv~Iia~G~~~~~al~Aa~~L~---~~G-i~v~Vi~~~~ikP~d~~~---l~------~~~~~~~~ivvvEe~~~~GG 304 (360)
..|++|----+.+..|+.-|.... .++ ++=..+-=.+|.|=++.- ++ +..-+.++||+|+|+.+.|-
T Consensus 291 d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~~~GKrvvlVDDSIVRGt 370 (474)
T KOG0572|consen 291 DADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKRVVLVDDSIVRGT 370 (474)
T ss_pred ccceEEecCCchhHHHHHHHHHhCCchhhhhhhcccccceecCccHHHHHhhhhhhcccchhhcCCceEEEEecceeccC
Confidence 456666555555555555544321 111 233445556777755421 11 11113478999999999999
Q ss_pred hHHHHHHHHHHhccccCCCce-EEEecCCC----------CccccccccCCCCHHHHHHHH
Q 018167 305 FGAEISASILERCFLRLEAPV-ARVCGLDT----------PFPLVFEPFYMPTKNKILDAI 354 (360)
Q Consensus 305 lgs~v~~~l~~~~~~~l~~~~-~~i~~~~~----------~~~~~~e~~gl~~~~~I~~~i 354 (360)
-.+.|...+.+.+ ...+ .|++.++- |-.+-|=.+++ |.+.|.+.|
T Consensus 371 Ts~~IVkmlreaG----AkeVh~riAsPpi~~pc~yGIdipt~keLIA~~~-t~deiae~i 426 (474)
T KOG0572|consen 371 TSSPIVKMLREAG----AKEVHIRIASPPIKYPCYYGIDIPTSKELIANKL-TVDEIAEHI 426 (474)
T ss_pred chHHHHHHHHHcC----CcEEEEEecCCcccccceeecCCCCHHHHHhcCC-CHHHHHHHh
Confidence 9999999998865 1222 24433332 22222444566 777776654
No 445
>PLN02530 histidine-tRNA ligase
Probab=20.09 E-value=2.6e+02 Score=28.73 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=36.0
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhcCCCeeEEEeccccCCcHHHHHHHHh-cCCeEEEEeC
Q 018167 239 SDITLVGWGAQ-LSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVR-KTGRLLISHE 298 (360)
Q Consensus 239 ~dv~Iia~G~~-~~~al~Aa~~L~~~Gi~v~Vi~~~~ikP~d~~~l~~~~~-~~~~ivvvEe 298 (360)
.++.|+..+.. ...|++.+..|+++|+++++. +.. +.+. +.+..+-+ +...++++.+
T Consensus 402 ~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd-~~~-~~l~-k~ik~A~k~g~~~iviiG~ 460 (487)
T PLN02530 402 VDDVVFALDEDLQGAAAGVASRLREKGRSVDLV-LEP-KKLK-WVFKHAERIGAKRLVLVGA 460 (487)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEe-cCC-CCHH-HHHHHHHHCCCCEEEEEch
Confidence 46788876654 567999999999999998763 333 3332 33433322 2456677654
Done!