Query 018168
Match_columns 360
No_of_seqs 227 out of 1028
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:43:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 1.8E-55 4E-60 411.5 26.5 223 29-260 1-235 (236)
2 PF00139 Lectin_legB: Legume l 100.0 7.4E-54 1.6E-58 400.6 22.2 220 28-258 1-236 (236)
3 cd01951 lectin_L-type legume l 100.0 6E-42 1.3E-46 317.1 23.8 200 43-258 13-222 (223)
4 cd07308 lectin_leg-like legume 99.9 2.1E-23 4.5E-28 192.8 23.5 185 44-258 20-216 (218)
5 cd06902 lectin_ERGIC-53_ERGL E 99.8 1.7E-18 3.7E-23 160.9 24.0 189 44-258 22-222 (225)
6 cd06901 lectin_VIP36_VIPL VIP3 99.8 1E-18 2.3E-23 164.4 22.2 189 44-259 20-222 (248)
7 cd06903 lectin_EMP46_EMP47 EMP 99.7 7.3E-16 1.6E-20 142.2 21.8 181 43-258 20-212 (215)
8 PF03388 Lectin_leg-like: Legu 99.7 3.9E-15 8.4E-20 138.9 21.0 188 44-257 22-225 (229)
9 KOG3839 Lectin VIP36, involved 99.5 1.1E-12 2.5E-17 125.1 14.8 186 44-257 72-272 (351)
10 KOG3838 Mannose lectin ERGIC-5 99.4 5.9E-12 1.3E-16 122.1 18.9 186 46-258 56-253 (497)
11 cd06900 lectin_VcfQ VcfQ bacte 99.0 2.3E-08 5E-13 92.6 18.4 183 60-257 33-253 (255)
12 cd00110 LamG Laminin G domain; 85.4 20 0.00044 29.8 13.5 94 72-210 8-101 (151)
13 KOG3514 Neurexin III-alpha [Si 84.9 6.8 0.00015 44.0 10.3 127 44-205 804-939 (1591)
14 smart00282 LamG Laminin G doma 84.1 22 0.00048 29.3 12.2 26 182-209 57-82 (135)
15 PF07010 Endomucin: Endomucin; 83.5 2.4 5.3E-05 39.4 5.4 56 297-355 189-244 (259)
16 PF01102 Glycophorin_A: Glycop 81.3 2 4.3E-05 36.4 3.7 15 298-312 66-80 (122)
17 PF01034 Syndecan: Syndecan do 76.9 0.85 1.8E-05 34.1 0.2 13 298-310 11-23 (64)
18 PF08693 SKG6: Transmembrane a 76.3 0.59 1.3E-05 31.7 -0.7 25 296-320 12-36 (40)
19 PF12768 Rax2: Cortical protei 74.5 3.3 7.2E-05 40.0 3.6 35 295-329 228-262 (281)
20 PF04478 Mid2: Mid2 like cell 66.7 1.4 2.9E-05 38.7 -0.9 11 296-306 49-59 (154)
21 PF07213 DAP10: DAP10 membrane 66.5 8 0.00017 30.1 3.4 34 294-327 32-65 (79)
22 PF06697 DUF1191: Protein of u 65.8 2.7 5.9E-05 40.4 0.9 22 289-310 207-228 (278)
23 PF15065 NCU-G1: Lysosomal tra 64.3 9.7 0.00021 38.0 4.5 28 234-261 280-307 (350)
24 TIGR01478 STEVOR variant surfa 62.9 8.7 0.00019 37.1 3.7 17 311-327 273-289 (295)
25 PTZ00370 STEVOR; Provisional 62.1 8.9 0.00019 37.0 3.6 17 311-327 269-285 (296)
26 PF02009 Rifin_STEVOR: Rifin/s 56.4 12 0.00027 36.5 3.6 28 300-327 260-287 (299)
27 PF02439 Adeno_E3_CR2: Adenovi 55.6 23 0.0005 23.7 3.7 8 314-321 21-28 (38)
28 PF01299 Lamp: Lysosome-associ 45.7 14 0.00031 35.8 2.2 30 296-326 270-299 (306)
29 PF14654 Epiglycanin_C: Mucin, 45.2 41 0.00089 27.3 4.3 32 288-320 11-42 (106)
30 PTZ00382 Variant-specific surf 41.6 8 0.00017 31.2 -0.2 15 312-326 81-95 (96)
31 PF06716 DUF1201: Protein of u 38.6 63 0.0014 22.6 3.8 32 292-324 2-34 (54)
32 PF08374 Protocadherin: Protoc 37.7 34 0.00073 31.8 3.2 24 295-318 37-60 (221)
33 PF12877 DUF3827: Domain of un 35.7 41 0.00089 36.1 3.8 34 312-347 284-328 (684)
34 PF10577 UPF0560: Uncharacteri 31.6 3.3E+02 0.0072 30.3 9.8 27 243-269 226-252 (807)
35 PF01277 Oleosin: Oleosin; In 31.1 34 0.00073 28.8 1.9 13 338-350 89-101 (118)
36 KOG3514 Neurexin III-alpha [Si 31.0 5.9E+02 0.013 29.6 11.6 48 183-238 518-565 (1591)
37 TIGR01477 RIFIN variant surfac 30.8 51 0.0011 32.9 3.4 25 302-327 316-340 (353)
38 PTZ00046 rifin; Provisional 30.7 51 0.0011 33.0 3.4 25 302-327 321-345 (358)
39 COG4736 CcoQ Cbb3-type cytochr 29.2 87 0.0019 23.2 3.6 27 300-326 8-34 (60)
40 PF12191 stn_TNFRSF12A: Tumour 28.6 18 0.00039 30.7 -0.1 17 311-327 93-109 (129)
41 PF02656 DUF202: Domain of unk 28.5 78 0.0017 23.6 3.4 24 302-325 47-70 (73)
42 PF02480 Herpes_gE: Alphaherpe 28.4 19 0.00041 37.0 0.0 9 251-259 293-301 (439)
43 PF15048 OSTbeta: Organic solu 28.1 83 0.0018 26.7 3.7 10 254-263 24-33 (125)
44 PF05393 Hum_adeno_E3A: Human 27.3 83 0.0018 25.1 3.3 13 303-315 37-49 (94)
45 PF01708 Gemini_mov: Geminivir 26.4 1.4E+02 0.003 24.0 4.5 10 331-340 73-82 (91)
46 PF15176 LRR19-TM: Leucine-ric 25.3 1.8E+02 0.0039 23.8 5.1 33 292-324 14-48 (102)
47 smart00159 PTX Pentraxin / C-r 24.7 84 0.0018 28.5 3.6 28 183-210 86-113 (206)
48 smart00560 LamGL LamG-like jel 24.3 98 0.0021 25.7 3.7 24 187-210 61-84 (133)
49 PF09835 DUF2062: Uncharacteri 23.8 87 0.0019 26.9 3.3 26 301-326 125-150 (154)
50 PF15102 TMEM154: TMEM154 prot 23.2 36 0.00079 29.7 0.8 9 294-302 58-66 (146)
51 PF03988 DUF347: Repeat of Unk 21.9 1.3E+02 0.0029 21.5 3.4 14 312-325 40-53 (55)
52 PF07172 GRP: Glycine rich pro 21.8 87 0.0019 25.2 2.6 19 1-21 1-19 (95)
53 PF12248 Methyltransf_FA: Farn 21.5 3.2E+02 0.0069 21.8 6.0 47 184-241 49-95 (102)
54 cd00152 PTX Pentraxins are pla 20.8 1.2E+02 0.0025 27.4 3.6 27 184-210 87-113 (201)
55 PF09301 DUF1970: Domain of un 20.7 95 0.0021 24.6 2.6 21 316-338 17-38 (117)
56 PHA03099 epidermal growth fact 20.7 79 0.0017 27.1 2.3 13 244-256 77-89 (139)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=1.8e-55 Score=411.49 Aligned_cols=223 Identities=46% Similarity=0.741 Sum_probs=201.3
Q ss_pred eeeEeCCCCCCCCCccCeEEecceEEecCCcEEEeCCCC--CCceEEEEecCCeeeecCCCCCceeeEEEEEEEEecc--
Q 018168 29 SSFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLTDSV--SSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKE-- 104 (360)
Q Consensus 29 ~sF~f~~F~~~~~~~~~l~l~GdA~v~~~g~~l~LT~~~--~~~~G~v~y~~Pi~l~~~~~~~~aSFsT~F~F~I~~~-- 104 (360)
.+|+|++|..+ .++|+|+|+|.+.+++ .||||++. .+++|||||++||+||++.+++++||+|+|+|.|.++
T Consensus 1 ~~f~f~~f~~~---~~~l~l~G~A~~~~~~-~i~LT~~~~~~~~~G~v~y~~pi~l~~~~~~~~~sFst~F~F~i~~~~~ 76 (236)
T cd06899 1 LSFNFNGFSSD---QSNLTLQGDATISSNG-ALQLTNDTSPASSVGRALYSKPVRLWDSTTGKVASFSTSFSFSITPPNP 76 (236)
T ss_pred CceecCCCCCC---CCCEEEecceEcCCCC-eEEecCCCCCCcceEEEEeCCCEEeecCCCCCceeEEEEEEEEEEcCCC
Confidence 47999999864 2599999999998555 69999998 8999999999999999999999999999999999863
Q ss_pred --CCCceEEEEecCCCCcCCCCCCCCCCCCCCCC------CCccEEEEEEeeccccccCCCCCCeeEEecCCcccceecc
Q 018168 105 --NGDGLAFIMVPSGFNLSVSANTSFGLSPEMDK------SKFRVVAVEFDTLRDVKYGDVNGNHVGIDVGSLVSVKVSN 176 (360)
Q Consensus 105 --~gdGlAFvl~p~~~~~~~~~~~~~G~~lGl~n------~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdins~~S~~~~~ 176 (360)
+||||||+|+|+...+ .+..|++|||.+ ..++.|||||||++|.+++||++||||||+|++.|..+..
T Consensus 77 ~~~gdGlAF~i~~~~~~~----~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHigIdvn~~~S~~~~~ 152 (236)
T cd06899 77 SLGGDGLAFFLAPTDSLP----PASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLVSVKAGY 152 (236)
T ss_pred CCCCCeEEEEEecCCCCC----CCCCcceeeeecCCCCCCcccceEEEEeecccCcccCCCCCCeEEEEcCCcccceeec
Confidence 7999999999987432 256799999975 3468999999999999989999999999999999888877
Q ss_pred ccccceeecCCCeEEEEEEEeCCCcEEEEEEEeCCCCCCCCceeeEEecCCCcCCCCceEEEEEeecCCccceeEEEEEE
Q 018168 177 VSSHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSNRNSSQICNLYSWS 256 (360)
Q Consensus 177 ~~~~~~~l~~G~~~~vwI~Yd~~~~~L~V~l~~~~~~kp~~p~ls~~vdLs~~l~~~~~yvGFSAsTG~~~~~h~I~sWs 256 (360)
+....+.|.+|+.++|||+||+.+++|+|+|++.+..||..|+|++.+||+.+|++ +|||||||+||+..|.|+|++|+
T Consensus 153 ~~~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~-~~~vGFSasTG~~~~~h~i~sWs 231 (236)
T cd06899 153 WDDDGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPE-EVYVGFSASTGLLTELHYILSWS 231 (236)
T ss_pred cccccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCCcCCEEEEeccHHHhCCC-ceEEEEEeEcCCCcceEEEEEEE
Confidence 76656678999999999999999999999999987778999999999999999998 99999999999999999999999
Q ss_pred EEec
Q 018168 257 FKLR 260 (360)
Q Consensus 257 F~~~ 260 (360)
|++.
T Consensus 232 F~s~ 235 (236)
T cd06899 232 FSSN 235 (236)
T ss_pred EEcC
Confidence 9875
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=7.4e-54 Score=400.55 Aligned_cols=220 Identities=44% Similarity=0.676 Sum_probs=192.1
Q ss_pred ceeeEeCCCCCCCCCccCeEEecceEEecCCcEEEeCCCCC-CceEEEEecCCeeeecCCCCCceeeEEEEEEEEec---
Q 018168 28 SSSFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLTDSVS-SSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSK--- 103 (360)
Q Consensus 28 ~~sF~f~~F~~~~~~~~~l~l~GdA~v~~~g~~l~LT~~~~-~~~G~v~y~~Pi~l~~~~~~~~aSFsT~F~F~I~~--- 103 (360)
+++|+|++|.. ..+|+|+|+|.+..++ +||||++.. +++|||||++||+||+..+++++||+|+|+|+|..
T Consensus 1 ~~~F~~~~F~~----~~~~~l~G~A~~~~~~-~l~LT~~~~~~~~G~~~y~~pi~l~d~~~~~~~sF~t~F~f~i~~~~~ 75 (236)
T PF00139_consen 1 SVSFSFPSFSN----SSNLTLNGDASISSNG-SLQLTPDSTNNQAGRAWYNNPIQLWDSTTGNVASFSTSFSFSITNGPG 75 (236)
T ss_dssp EEEEEESSBTT----GTTEEEEETEEEETTS-EEESSTBETSSEEEEEEESSEEESBETTTTEBEEEEEEEEEEEEESSS
T ss_pred CceEEcCCCCC----CCceEEEeeEEeccCC-eEEcCCCCCCCcEEEEEECCcEEEeCCCCcceeeeeeEEEEEEeccCC
Confidence 36899999932 2699999999996656 799999987 99999999999999999999999999999999942
Q ss_pred ---cCCCceEEEEecCCCCcCCCCCCCCCCCCCCCCC------CccEEEEEEeeccccccCCCCCCeeEEecCCccccee
Q 018168 104 ---ENGDGLAFIMVPSGFNLSVSANTSFGLSPEMDKS------KFRVVAVEFDTLRDVKYGDVNGNHVGIDVGSLVSVKV 174 (360)
Q Consensus 104 ---~~gdGlAFvl~p~~~~~~~~~~~~~G~~lGl~n~------~~~~vAVEFDT~~n~~~~Dp~~nHVgIdins~~S~~~ 174 (360)
.+||||||+|+|+... +.++.|++||+.+. .++.|||||||++|.+++||++|||||++|++.+..+
T Consensus 76 ~~~~~~dGlAFvi~~~~~~----~~~~~g~~lG~~~~~~~~~~~~~~vAVEFDT~~N~~~~d~~~nHIgI~~n~~~s~~~ 151 (236)
T PF00139_consen 76 SSNNGGDGLAFVIQPDPNL----PGGSSGGYLGLFNSSTDGNGINNSVAVEFDTYKNPEYNDPDDNHIGIDVNSVVSNKT 151 (236)
T ss_dssp SSSS-BEEEEEEEEETTSS----TTTSSGGGTTTSSSSSTTGGGGCEEEEEEETSTCGGGTTTSSSEEEEEESSSSESEE
T ss_pred CCccCCCceEEEEecCccc----ccCCCCCccCccccccCCCccCcEEEEEEeeeecccccccCCCEEEEECCCCccccc
Confidence 3799999999999832 24467889998652 6799999999999999999999999999999999887
Q ss_pred cccc---ccceeecCCCeEEEEEEEeCCCcEEEEEEEeCCCCCCCCceeeEEecCCCcCCCCceEEEEEeecCCccceeE
Q 018168 175 SNVS---SHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSNRNSSQICN 251 (360)
Q Consensus 175 ~~~~---~~~~~l~~G~~~~vwI~Yd~~~~~L~V~l~~~~~~kp~~p~ls~~vdLs~~l~~~~~yvGFSAsTG~~~~~h~ 251 (360)
.++. .....|.+|+.++|||+||+.+++|+|+|+... .||..|++++.+||+.++++ +||||||||||...|.|+
T Consensus 152 ~~~~~~~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~~-~~~~~~~l~~~vdL~~~l~~-~v~vGFsasTG~~~~~h~ 229 (236)
T PF00139_consen 152 ASAGYYSSPSFSLSDGKWHTVWIDYDASTKRLSVYLDDNS-SKPSSPVLSVNVDLSAVLPE-QVYVGFSASTGGSYQTHD 229 (236)
T ss_dssp EE----EEEEHHHGTTSEEEEEEEEETTTTEEEEEEEETT-TTSEEEEEEEE--HHHHSCS-EEEEEEEEEESSSSEEEE
T ss_pred ccccccccccccccCCcEEEEEEEEcCCccEEEEEEeccc-CCCcceeEEEEEchHHhcCC-CcEEEEEeecCCCcceEE
Confidence 6553 335678899999999999999999999999984 68999999999999999998 999999999999999999
Q ss_pred EEEEEEE
Q 018168 252 LYSWSFK 258 (360)
Q Consensus 252 I~sWsF~ 258 (360)
|++|+|+
T Consensus 230 I~sW~F~ 236 (236)
T PF00139_consen 230 ILSWSFS 236 (236)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 9999996
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=100.00 E-value=6e-42 Score=317.10 Aligned_cols=200 Identities=27% Similarity=0.435 Sum_probs=167.3
Q ss_pred ccCeEEecceEEec-CCcEEEeCCCCCCceEEEEecCCeeeecCCCCCceeeEEEEEEEEec---cCCCceEEEEecCCC
Q 018168 43 ESSIALYGDAKVVN-GGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSK---ENGDGLAFIMVPSGF 118 (360)
Q Consensus 43 ~~~l~l~GdA~v~~-~g~~l~LT~~~~~~~G~v~y~~Pi~l~~~~~~~~aSFsT~F~F~I~~---~~gdGlAFvl~p~~~ 118 (360)
..+|.++|+|.+.+ ++ .|+||++..+++|++||++||++| ++|+|+|+|+|.+ .+||||||+|+|...
T Consensus 13 ~~~~~~~G~A~~~~~~~-~l~Lt~~~~~~~G~~~~~~~i~~~-------~~F~~~F~f~i~~~~~~~gdG~aF~l~~~~~ 84 (223)
T cd01951 13 QSNWQLNGSATLTTDSG-VLRLTPDTGNQAGSAWYKTPIDLS-------KDFTTTFKFYLGTKGTNGADGIAFVLQNDPA 84 (223)
T ss_pred hhhcEEcccEEecCCCC-EEEECCCCCCcEEEEEECCcEecc-------CCEEEEEEEEEeCCCCCCCCcEEEEEecCCC
Confidence 36899999999985 44 699999999999999999999997 5899999999986 489999999999874
Q ss_pred CcCCCCCCCC--CCCCCCCCCCccEEEEEEeeccccccCCCCCCeeEEecCCcccce--ecccccccee--ecCCCeEEE
Q 018168 119 NLSVSANTSF--GLSPEMDKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDVGSLVSVK--VSNVSSHNIV--LNSDKKLNS 192 (360)
Q Consensus 119 ~~~~~~~~~~--G~~lGl~n~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdins~~S~~--~~~~~~~~~~--l~~G~~~~v 192 (360)
.. .+.. |+++|+. ..++.+||||||++|.+.+||+.|||||++|+..+.. ........+. ..+|+.++|
T Consensus 85 ~~----~~~~g~~~~lG~~-~~~~~~aVefDT~~N~~~~dp~~~higi~~n~~~~~~~~~~~~~~~~~~~~~~~g~~~~v 159 (223)
T cd01951 85 GA----LGGGGGGGGLGYG-GIGNSVAVEFDTYKNDDNNDPNGNHISIDVNGNGNNTALATSLGSASLPNGTGLGNEHTV 159 (223)
T ss_pred Cc----cccCCCCCccCcc-ccCCeEEEEEeccccCCCCCCCCCEEEEEcCCCCCCcccccccceeeCCCccCCCCEEEE
Confidence 32 2222 3778875 4678999999999999888999999999999987541 1111111222 223899999
Q ss_pred EEEEeCCCcEEEEEEEeCCCCCCCCceeeEEecCCCcCCCCceEEEEEeecCCccceeEEEEEEEE
Q 018168 193 WIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSNRNSSQICNLYSWSFK 258 (360)
Q Consensus 193 wI~Yd~~~~~L~V~l~~~~~~kp~~p~ls~~vdLs~~l~~~~~yvGFSAsTG~~~~~h~I~sWsF~ 258 (360)
||+||+.+++|+|+|.+.+. |..++++.++||+.++++ +||||||||||...|.|+|++|+|+
T Consensus 160 ~I~Y~~~~~~L~v~l~~~~~--~~~~~l~~~~~l~~~~~~-~~yvGFTAsTG~~~~~h~V~~wsf~ 222 (223)
T cd01951 160 RITYDPTTNTLTVYLDNGST--LTSLDITIPVDLIQLGPT-KAYFGFTASTGGLTNLHDILNWSFT 222 (223)
T ss_pred EEEEeCCCCEEEEEECCCCc--cccccEEEeeeecccCCC-cEEEEEEcccCCCcceeEEEEEEec
Confidence 99999999999999987654 777999999999998887 9999999999999999999999996
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.92 E-value=2.1e-23 Score=192.77 Aligned_cols=185 Identities=18% Similarity=0.248 Sum_probs=136.5
Q ss_pred cCeEEecceEEecCCcEEEeCCCCCCceEEEEecCCeeeecCCCCCceeeEEEEEEEEec---cCCCceEEEEecCCCCc
Q 018168 44 SSIALYGDAKVVNGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSK---ENGDGLAFIMVPSGFNL 120 (360)
Q Consensus 44 ~~l~l~GdA~v~~~g~~l~LT~~~~~~~G~v~y~~Pi~l~~~~~~~~aSFsT~F~F~I~~---~~gdGlAFvl~p~~~~~ 120 (360)
.+|.+.|+|.+.++ .|+||++.+++.|++||+.|+++ .+|+++|+|+|.+ .+||||||+|+|+...
T Consensus 20 ~~w~~~G~a~~~~~--~i~LT~~~~~~~G~~~~~~pi~~--------~~F~~~f~F~i~~~~~~~gdG~af~~~~~~~~- 88 (218)
T cd07308 20 GNWTVGGSTVITKN--YIRLTPDVPSQSGSLWSRVPIPA--------KDFEIEVEFSIHGGSGLGGDGFAFWYTEEPGS- 88 (218)
T ss_pred CCeEEcCCeEEeCC--EEEeCCCCCCCEeEEEeCCCccC--------CCEEEEEEEEEeCCCCCCCCEEEEEEECCCCC-
Confidence 58999999999865 69999999999999999999997 4799999999986 3799999999997532
Q ss_pred CCCCCCCCCCCCCCCCCCccEEEEEEeeccccccCCCCCCeeEEecCC-cccce------eccccccceeecC-CCeEEE
Q 018168 121 SVSANTSFGLSPEMDKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDVGS-LVSVK------VSNVSSHNIVLNS-DKKLNS 192 (360)
Q Consensus 121 ~~~~~~~~G~~lGl~n~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdins-~~S~~------~~~~~~~~~~l~~-G~~~~v 192 (360)
.|..+|..+ ..+.+||||||+.|. +-...+|.+.+|. ..+.. ......+.+...+ ++..++
T Consensus 89 -------~g~~~G~~~-~~~Glai~fdt~~n~---~~~~p~i~~~~Ndg~~~~~~~~d~~~~~~~~c~~~~~~~~~~~~~ 157 (218)
T cd07308 89 -------DGPLFGGPD-KFKGLAIFFDTYDND---GKGFPSISVFLNDGTKSYDYETDGEKLELASCSLKFRNSNAPTTL 157 (218)
T ss_pred -------CCcccccCC-CCCEEEEEEEcCCCC---CCCCCeEEEEEeCCCceecccCCCccccccceeEecccCCCCeEE
Confidence 244566543 457899999999985 3344566665553 22211 1122334444433 678999
Q ss_pred EEEEeCCCcEEEEEEEeCCCCCCCCceeeEEecCCC-cCCCCceEEEEEeecCCccceeEEEEEEEE
Q 018168 193 WIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSK-LWNDEEVFVGLSSSNRNSSQICNLYSWSFK 258 (360)
Q Consensus 193 wI~Yd~~~~~L~V~l~~~~~~kp~~p~ls~~vdLs~-~l~~~~~yvGFSAsTG~~~~~h~I~sWsF~ 258 (360)
+|.|+ .+.|+|.+..... .... ...++.. .+++ ..|+||||+||...+.|+|++|.+.
T Consensus 158 ~I~y~--~~~l~v~i~~~~~-~~~~----~c~~~~~~~l~~-~~y~G~sA~tg~~~d~~dIls~~~~ 216 (218)
T cd07308 158 RISYL--NNTLKVDITYSEG-NNWK----ECFTVEDVILPS-QGYFGFSAQTGDLSDNHDILSVHTY 216 (218)
T ss_pred EEEEE--CCEEEEEEeCCCC-CCcc----EEEEcCCcccCC-CCEEEEEeccCCCcCcEEEEEEEee
Confidence 99999 5789999976421 1122 2233333 3566 8999999999999999999999874
No 5
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=99.83 E-value=1.7e-18 Score=160.89 Aligned_cols=189 Identities=17% Similarity=0.155 Sum_probs=135.6
Q ss_pred cCeEEecceEEecCCcEEEeCCCCCCceEEEEecCCeeeecCCCCCceeeEEEEEEEEecc---CCCceEEEEecCCCCc
Q 018168 44 SSIALYGDAKVVNGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKE---NGDGLAFIMVPSGFNL 120 (360)
Q Consensus 44 ~~l~l~GdA~v~~~g~~l~LT~~~~~~~G~v~y~~Pi~l~~~~~~~~aSFsT~F~F~I~~~---~gdGlAFvl~p~~~~~ 120 (360)
.+|.+.|+|.+..+ .||||++.+++.|.+|.+.|++. .+|+.+|+|+|.+. +||||||+++.+..
T Consensus 22 ~~W~~~G~t~~~~~--~IrLTp~~~~~~G~iw~~~~~~~--------~~w~ie~~Fri~g~~~~~gdG~a~W~t~~~~-- 89 (225)
T cd06902 22 PFWSHGGDAIASLE--QVRLTPSLRSKKGSVWTKNPFSF--------ENWEVEVTFRVTGRGRIGADGLAIWYTKERG-- 89 (225)
T ss_pred CceEecccEEecCC--EEEECCCCCCCEEEEeeCCCcCC--------CCEEEEEEEEEecCCCCCCCEEEEEEECCCC--
Confidence 58999999999765 69999999999999999999984 36999999999753 58999999997652
Q ss_pred CCCCCCCCCCCCCCCCCCccEEEEEEeeccccccCCCCCCeeEEecCC-ccccee------ccccccceeecC-CCeEEE
Q 018168 121 SVSANTSFGLSPEMDKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDVGS-LVSVKV------SNVSSHNIVLNS-DKKLNS 192 (360)
Q Consensus 121 ~~~~~~~~G~~lGl~n~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdins-~~S~~~------~~~~~~~~~l~~-G~~~~v 192 (360)
..|..+|..+ .-.-+||.|||+.|.+ ..+...|.+-+|. ...... ..++.+.....+ ....++
T Consensus 90 ------~~G~~~G~~~-~f~Gl~I~~Dt~~n~~--~~~~p~i~~~~NDGt~~yd~~~D~~~~~~~~C~~~~rn~~~p~~~ 160 (225)
T cd06902 90 ------EEGPVFGSSD-KWNGVGIFFDSFDNDG--KKNNPAILVVGNDGTKSYDHQNDGLTQALGSCLRDFRNKPYPVRA 160 (225)
T ss_pred ------CCCCccCCCC-cccEEEEEEECCCCCC--CCCCcEEEEEECCCCeeccccCCCcccccceEEEeccCCCCCeEE
Confidence 1345566544 3356999999998753 2333467655543 222211 112334444433 467899
Q ss_pred EEEEeCCCcEEEEEEEeCCCCCCCCceeeEEecCCCc-CCCCceEEEEEeecCCccceeEEEEEEEE
Q 018168 193 WIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKL-WNDEEVFVGLSSSNRNSSQICNLYSWSFK 258 (360)
Q Consensus 193 wI~Yd~~~~~L~V~l~~~~~~kp~~p~ls~~vdLs~~-l~~~~~yvGFSAsTG~~~~~h~I~sWsF~ 258 (360)
+|.|.. +.|+|.++... ++........+++..+ ||. ..|+||||+||+..+.|+|++|++.
T Consensus 161 rI~Y~~--~~l~V~~d~~~--~~~~~~~~~Cf~~~~v~LP~-~~yfGiSA~Tg~l~d~hDIls~~~~ 222 (225)
T cd06902 161 KITYYQ--NVLTVSINNGF--TPNKDDYELCTRVENMVLPP-NGYFGVSAATGGLADDHDVLSFLTF 222 (225)
T ss_pred EEEEEC--CeEEEEEeCCc--CCCCCcccEEEecCCeeCCC-CCEEEEEecCCCCCCcEeEEEEEEe
Confidence 999999 46888887421 2222223444555543 676 8999999999999999999999986
No 6
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=99.83 E-value=1e-18 Score=164.41 Aligned_cols=189 Identities=17% Similarity=0.204 Sum_probs=129.9
Q ss_pred cCeEEecceEEecCCcEEEeCCCCCCceEEEEecCCeeeecCCCCCceeeEEEEEEEEecc----CCCceEEEEecCCCC
Q 018168 44 SSIALYGDAKVVNGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKE----NGDGLAFIMVPSGFN 119 (360)
Q Consensus 44 ~~l~l~GdA~v~~~g~~l~LT~~~~~~~G~v~y~~Pi~l~~~~~~~~aSFsT~F~F~I~~~----~gdGlAFvl~p~~~~ 119 (360)
.+|.+.|+|.+.++ .||||++.+++.|++||+.|+++ .+|+++|+|+|.+. +||||||+++.....
T Consensus 20 ~~w~~~G~a~v~~~--~IrLTp~~~~~~G~~w~~~p~~~--------~~F~~~f~F~I~~~~~~~~GdGlAfw~t~~~~~ 89 (248)
T cd06901 20 PLWDFLGSTMVTSQ--YIRLTPDHQSKQGSIWNRVPCYL--------RDWEMHVHFKVHGSGKNLFGDGFAIWYTKERMQ 89 (248)
T ss_pred CCEEEcceEEEcCC--eEEECCCCCCCEEEEeccCCccC--------CCEEEEEEEEEeCCCCCCCCCEEEEEEEcCCCc
Confidence 58999999999876 69999999889999999999997 46999999999863 689999999987532
Q ss_pred cCCCCCCCCCCCCCCCCCCccEEEEEEeecccccc-CCCCCCeeEEecC-Cccccee------ccccccceeec-CCCeE
Q 018168 120 LSVSANTSFGLSPEMDKSKFRVVAVEFDTLRDVKY-GDVNGNHVGIDVG-SLVSVKV------SNVSSHNIVLN-SDKKL 190 (360)
Q Consensus 120 ~~~~~~~~~G~~lGl~n~~~~~vAVEFDT~~n~~~-~Dp~~nHVgIdin-s~~S~~~------~~~~~~~~~l~-~G~~~ 190 (360)
.|..+|..+ .-.-+||.|||+.|.+- ......-|.+-+| +...... ..+..+...+. .+...
T Consensus 90 --------~G~~fG~~~-~f~Gl~I~~Dt~~n~~~~~~~~~P~i~~~~NDGt~~yd~~~Dg~~~~~~~C~~~~rn~~~~t 160 (248)
T cd06901 90 --------PGPVFGSKD-NFHGLAIFFDTYSNQNGEHEHVHPYISAMVNNGSLSYDHDRDGTHTELAGCSAPFRNKDHDT 160 (248)
T ss_pred --------cCcccccCC-CCceEEEEEECCCCCCCcccCCCceEEEEEcCCCeeecccCCCchhhcCceeeeccCCCCCe
Confidence 234455433 23459999999988631 0112223444343 3222111 11233444443 34557
Q ss_pred EEEEEEeCCCcEEEEEEEeCCCCCCCCceeeEEecCCCc-CCCCceEEEEEeecCCccceeEEEEEEEEe
Q 018168 191 NSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKL-WNDEEVFVGLSSSNRNSSQICNLYSWSFKL 259 (360)
Q Consensus 191 ~vwI~Yd~~~~~L~V~l~~~~~~kp~~p~ls~~vdLs~~-l~~~~~yvGFSAsTG~~~~~h~I~sWsF~~ 259 (360)
+++|.|... .|+|.++..+... ...|+ +...+ ||. ..|+||||+||+..+.|+|++-.+..
T Consensus 161 ~~rI~Y~~~--~l~v~vd~~~~~~-w~~Cf----~~~~v~LP~-~~yfGiSA~Tg~~sd~hdIlsv~~~~ 222 (248)
T cd06901 161 FVAIRYSKG--RLTVMTDIDGKNE-WKECF----DVTGVRLPT-GYYFGASAATGDLSDNHDIISMKLYE 222 (248)
T ss_pred EEEEEEECC--eEEEEEecCCCCc-eeeeE----EeCCeecCC-CCEEEEEecCCCCCCcEEEEEEEEec
Confidence 899999974 5777777544322 12233 22322 566 78999999999999999999977654
No 7
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=99.73 E-value=7.3e-16 Score=142.25 Aligned_cols=181 Identities=17% Similarity=0.218 Sum_probs=126.4
Q ss_pred ccCeEEecceEEecCCcEEEeCCCCCCceEEEEecCCeeeecCCCCCceeeEEEEEEEEecc---CCCceEEEEecCCCC
Q 018168 43 ESSIALYGDAKVVNGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKE---NGDGLAFIMVPSGFN 119 (360)
Q Consensus 43 ~~~l~l~GdA~v~~~g~~l~LT~~~~~~~G~v~y~~Pi~l~~~~~~~~aSFsT~F~F~I~~~---~gdGlAFvl~p~~~~ 119 (360)
..+|.+.|+|.+.++ .||||++ +++.|.+|.+.|+++.+ +|+.+|+|+|+.. +||||||+++.++..
T Consensus 20 i~~W~~~G~t~v~~~--~IrLTp~-~s~~G~iWs~~pl~~~~-------~w~ie~~Fri~G~~~~~gdGla~W~t~~~~~ 89 (215)
T cd06903 20 IPNWQTSGNPKLESG--RIILTPP-GNQRGSLWLKKPLSLKD-------EWTIEWTFRSTGPEGRSGGGLNFWLVKDGNA 89 (215)
T ss_pred CCCeEEcCcEEeeCC--eEEECCC-CCceEeEeeCCcCCCCC-------CEEEEEEEEecccCCcCCCEEEEEEECCCcc
Confidence 368999999999876 6999999 99999999999999752 5999999999864 699999999977532
Q ss_pred cCCCCCCCCC-CCCCCCCCCccEEEEEEeeccccccCCCCCCeeEEecC-Ccccceec-----cccccceee-cCCCeEE
Q 018168 120 LSVSANTSFG-LSPEMDKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDVG-SLVSVKVS-----NVSSHNIVL-NSDKKLN 191 (360)
Q Consensus 120 ~~~~~~~~~G-~~lGl~n~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdin-s~~S~~~~-----~~~~~~~~l-~~G~~~~ 191 (360)
. .| ...|-.+ .-.-+||.|||+.|.. ..|.+-+| +....... .++.+.+.. +.+...+
T Consensus 90 ~-------~g~~~fG~~~-~f~Gl~I~~Dt~~n~~------p~i~~~~NDGt~~yd~~~d~~~~~g~C~~~~rn~~~p~~ 155 (215)
T cd06903 90 D-------VGTSSIYGPS-KFDGLQLLIDNNGGSG------GSLRGFLNDGSKDYKNEDVDSLAFGSCLFAYQDSGVPST 155 (215)
T ss_pred c-------CCccccCCCC-CCcEEEEEEECCCCCC------ceEEEEECCCCeeccccCCcccccceeeEeccCCCCCEE
Confidence 1 11 2233211 2234999999997631 23443333 32222211 133444444 3456889
Q ss_pred EEEEEeCCCcEEEEEEEeCCCCCCCCceeeE-EecCCCcCCCCceEEEEEeecCCccceeEEEEEEEE
Q 018168 192 SWIDYEASSKRLEVRLSYLDSAKPVDPLLSY-PIDLSKLWNDEEVFVGLSSSNRNSSQICNLYSWSFK 258 (360)
Q Consensus 192 vwI~Yd~~~~~L~V~l~~~~~~kp~~p~ls~-~vdLs~~l~~~~~yvGFSAsTG~~~~~h~I~sWsF~ 258 (360)
++|.|....+.|+|.++.. .|+.. .+. ||....|+||||+||+..+.|+|++-.+.
T Consensus 156 iri~Y~~~~~~l~v~vd~~-------~Cf~~~~v~----lP~~~y~fGiSAaTg~~~d~hdIl~~~~~ 212 (215)
T cd06903 156 IRLSYDALNSLFKVQVDNR-------LCFQTDKVQ----LPQGGYRFGITAANADNPESFEILKLKVW 212 (215)
T ss_pred EEEEEECCCCEEEEEECCC-------EEEecCCee----cCCCCCEEEEEEcCCCCCCcEEEEEEEEe
Confidence 9999999778899988531 24432 233 45226789999999999999999986653
No 8
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=99.69 E-value=3.9e-15 Score=138.87 Aligned_cols=188 Identities=18% Similarity=0.238 Sum_probs=123.3
Q ss_pred cCeEEecceEEecCCcEEEeCCCCCCceEEEEecCCeeeecCCCCCceeeEEEEEEEEecc----CCCceEEEEecCCCC
Q 018168 44 SSIALYGDAKVVNGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKE----NGDGLAFIMVPSGFN 119 (360)
Q Consensus 44 ~~l~l~GdA~v~~~g~~l~LT~~~~~~~G~v~y~~Pi~l~~~~~~~~aSFsT~F~F~I~~~----~gdGlAFvl~p~~~~ 119 (360)
.+|.+.|+|.+.++ .||||++.+++.|.+|.+.|++.. +|+.+|+|+|... .||||||+++.....
T Consensus 22 ~~W~~~G~t~i~~~--~IrLTp~~~~~~G~iws~~~~~~~--------~w~i~~~Fri~g~~~~~~g~G~a~W~t~~~~~ 91 (229)
T PF03388_consen 22 PNWDIGGSTVITDN--FIRLTPDRQSQSGSIWSRKPIPFD--------NWEIEFTFRISGQEKGLGGDGMAFWYTKDPGS 91 (229)
T ss_dssp TTEEEEET-EEESS--EEEEE-SSTTEEEEEEESS-BEES--------EEEEEEEEEEESS-SSS-S-EEEEEEESSSSS
T ss_pred CCEEECCeEEecCC--EEEECCCcccCEEEEEEcCCCCcc--------CEEEEEEEEEeccccCcCCCeEEEEEEcCccc
Confidence 58999999999876 699999999999999999999973 6999999999875 799999999876532
Q ss_pred cCCCCCCCCCCCCCCCCCCccEEEEEEeeccccccC-CCCCCeeEEecCC-ccccee------ccccccceeecC-CCeE
Q 018168 120 LSVSANTSFGLSPEMDKSKFRVVAVEFDTLRDVKYG-DVNGNHVGIDVGS-LVSVKV------SNVSSHNIVLNS-DKKL 190 (360)
Q Consensus 120 ~~~~~~~~~G~~lGl~n~~~~~vAVEFDT~~n~~~~-Dp~~nHVgIdins-~~S~~~------~~~~~~~~~l~~-G~~~ 190 (360)
.|...|..+ .-.-+||=||||.|.+.. ......|.+.+|. ...... ..++.+.+.+.+ +...
T Consensus 92 --------~G~~fG~~~-~f~Gl~i~idt~~N~~~~~~~~~p~i~~~~NDGt~~~~~~~dg~~~~~~~C~~~~rn~~~p~ 162 (229)
T PF03388_consen 92 --------DGPVFGGPD-KFDGLGIFIDTYDNDEGGHKRGFPYISAMLNDGTKSYDHDNDGKDQSLGSCSADYRNSDVPT 162 (229)
T ss_dssp --------SCSBTTB-S-S-EEEEEEEEES-TTCTTCTSTSSEEEEEEEESSS---GGGTTTTT-SEEEE---BTESSEE
T ss_pred --------cccccCCCc-ccceEEEEEEcccCCCcccccccceEEEEecCCCccccccccCcccccccceeccCcCCCCE
Confidence 344555432 335599999999986422 1233456555542 221111 112234444443 4567
Q ss_pred EEEEEEeCCCcEEEEEEEeC--CCCCCCCceeeE-EecCCCcCCCCceEEEEEeecCCccceeEEEEEEE
Q 018168 191 NSWIDYEASSKRLEVRLSYL--DSAKPVDPLLSY-PIDLSKLWNDEEVFVGLSSSNRNSSQICNLYSWSF 257 (360)
Q Consensus 191 ~vwI~Yd~~~~~L~V~l~~~--~~~kp~~p~ls~-~vdLs~~l~~~~~yvGFSAsTG~~~~~h~I~sWsF 257 (360)
+++|.|... .|+|.++.. ........|+.. .++ ||. ..|+|+||+||...+.|+|++-..
T Consensus 163 ~~ri~Y~~~--~l~v~id~~~~~~~~~~~~Cf~~~~v~----LP~-~~yfGvSA~Tg~~~d~hdi~s~~~ 225 (229)
T PF03388_consen 163 RIRISYSKN--TLTVSIDSNYLKNQDDWELCFTTDGVD----LPE-GYYFGVSAATGELSDNHDILSVKT 225 (229)
T ss_dssp EEEEEEETT--EEEEEEETSCCSECCTTEEEEEESTEE----GGS-SBEEEEEEEESSSGGEEEEEEEEE
T ss_pred EEEEEEECC--eEEEEEecccccCCcCCcEEEEcCCee----cCC-CCEEEEEecCCCCCCcEEEEEEEE
Confidence 899999994 677777631 112233445543 233 566 789999999999999999998543
No 9
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.1e-12 Score=125.05 Aligned_cols=186 Identities=19% Similarity=0.209 Sum_probs=131.2
Q ss_pred cCeEEecceEEecCCcEEEeCCCCCCceEEEEecCCeeeecCCCCCceeeEEEEEEEEecc----CCCceEEEEecCCCC
Q 018168 44 SSIALYGDAKVVNGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKE----NGDGLAFIMVPSGFN 119 (360)
Q Consensus 44 ~~l~l~GdA~v~~~g~~l~LT~~~~~~~G~v~y~~Pi~l~~~~~~~~aSFsT~F~F~I~~~----~gdGlAFvl~p~~~~ 119 (360)
.+|.+.|++.+..+ .||||++.+++.|.+|-..||... +|...+.|++..+ .|||||++++-+...
T Consensus 72 ~~W~~~Gstvv~~~--~irLT~d~qsk~GAv~n~~Pv~s~--------~wev~v~fkv~~~s~~lfgdG~Aiw~t~Er~q 141 (351)
T KOG3839|consen 72 PNWNLSGSTVVTSN--YIRLTPDEQSKSGAVWNRQPVFSR--------DWEVLVHFKVHGQSKNLFGDGMAIWYTKERAQ 141 (351)
T ss_pred cCccccccEEEEee--eeeccccccccccccccCCCcccc--------ceeEEEEEEEecCCCcccccceEEEeeccccc
Confidence 58999999999976 599999999999999999999854 5999999999865 689999999987643
Q ss_pred cCCCCCCCCCCCCCCCCCCccEEEEEEeeccccccCCCC--CCeeEEecC-Ccccc------eeccccccceeecCCC-e
Q 018168 120 LSVSANTSFGLSPEMDKSKFRVVAVEFDTLRDVKYGDVN--GNHVGIDVG-SLVSV------KVSNVSSHNIVLNSDK-K 189 (360)
Q Consensus 120 ~~~~~~~~~G~~lGl~n~~~~~vAVEFDT~~n~~~~Dp~--~nHVgIdin-s~~S~------~~~~~~~~~~~l~~G~-~ 189 (360)
.|..+|-.+ .-..+||-.|||-|.+ +-+. -.-+.+.+| +..|. +.+.+..+...+++.. .
T Consensus 142 --------~GPvFG~~d-kF~GL~vfidtY~n~~-g~~~~v~P~isvmv~~gs~sYD~~~Dg~~tel~gc~a~~rn~~~d 211 (351)
T KOG3839|consen 142 --------PGPVFGSKD-KFTGLAVFIDTYGNHN-GPHEHVFPYISVMVNIGSLSYDHSKDGTHTELAGCTANFRNLPHD 211 (351)
T ss_pred --------CCCCCCCcc-cceeEEEEEeccCCcC-CCcccceeeEEEEeccCCcccccCCCCCccccccceeeeccCCCc
Confidence 356666543 2356999999998863 1111 112333332 22111 1222333334444443 3
Q ss_pred EEEEEEEeCCCcEEEEEEEeCCCCCCCCceeeEEecCCCc-CCCCceEEEEEeecCCccceeEEEEEEE
Q 018168 190 LNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKL-WNDEEVFVGLSSSNRNSSQICNLYSWSF 257 (360)
Q Consensus 190 ~~vwI~Yd~~~~~L~V~l~~~~~~kp~~p~ls~~vdLs~~-l~~~~~yvGFSAsTG~~~~~h~I~sWsF 257 (360)
..+-|.|+. +.|++.++..+. . .+....++..+ +|. .-|+|+||+||..++.|+|.+-.+
T Consensus 212 t~~~iry~~--~~l~~~~dl~~~---~--~~~~c~~~n~v~lp~-g~~fg~SasTGdlSd~HdivS~kl 272 (351)
T KOG3839|consen 212 TLVVIRYEK--KTLSISIDLEGP---N--EWIDCFSLNNVELPL-GYFFGVSASTGDLSDSHDIVSLKL 272 (351)
T ss_pred ceeEEEecC--CceEEEEecCCC---c--eeeeeeeecceeccc-ceEEeeeeccCccchhhHHHHhhh
Confidence 457899999 677777766542 1 34556777776 666 889999999999999999988654
No 10
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=5.9e-12 Score=122.12 Aligned_cols=186 Identities=16% Similarity=0.209 Sum_probs=129.9
Q ss_pred eEEecceEEecCCcEEEeCCCCCCceEEEEecCCeeeecCCCCCceeeEEEEEEEEecc---CCCceEEEEecCCCCcCC
Q 018168 46 IALYGDAKVVNGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKE---NGDGLAFIMVPSGFNLSV 122 (360)
Q Consensus 46 l~l~GdA~v~~~g~~l~LT~~~~~~~G~v~y~~Pi~l~~~~~~~~aSFsT~F~F~I~~~---~gdGlAFvl~p~~~~~~~ 122 (360)
|...|||..+.+ .|||+++..++.|.||-+..+.+.+ |..+.+|+|++. ++||||++.+...
T Consensus 56 W~~~GdAIas~e--qvRlaPSmrsrkGavWtka~~~fe~--------weVev~~rVtGrGRiGAdGlaiWYt~~~----- 120 (497)
T KOG3838|consen 56 WSHHGDAIASSE--QVRLAPSMRSRKGAVWTKASVPFEN--------WEVEVQFRVTGRGRIGADGLAIWYTRGR----- 120 (497)
T ss_pred eeecCccccccc--ceeeccccccccCceeecccCCccc--------ceEEEEEEecccccccCCceEEEEecCC-----
Confidence 888999988776 5999999999999999999888753 999999999864 7999999998654
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEEeeccccccCCCCCCeeEEecCC-ccccee-cc-----ccccceeecCC-CeEEEEE
Q 018168 123 SANTSFGLSPEMDKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDVGS-LVSVKV-SN-----VSSHNIVLNSD-KKLNSWI 194 (360)
Q Consensus 123 ~~~~~~G~~lGl~n~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdins-~~S~~~-~~-----~~~~~~~l~~G-~~~~vwI 194 (360)
|..|..+|-.+ .=.-++|-||.+-|.. .-|+.-|.+-.|. ..+... .+ ++++.-+..|- -...++|
T Consensus 121 ---G~~GpVfGg~d-~WnGigiffDSfdnD~--qknnP~Is~~lndGt~~ydh~~DGasQ~LssCqrDFRNkPyPvRarI 194 (497)
T KOG3838|consen 121 ---GHVGPVFGGLD-SWNGIGIFFDSFDNDG--QKNNPAISVLLNDGTIPYDHPGDGASQGLSSCQRDFRNKPYPVRARI 194 (497)
T ss_pred ---Ccccccccccc-cccceEEEeecccccC--CcCCccEEEEecCCcccccCCCccHHHHHHHhhHHhccCCCCceEEE
Confidence 22233344211 1134899999998853 3455567766653 222211 11 23333344432 3578999
Q ss_pred EEeCCCcEEEEEEEeCCCCCCCCceeeEEecCCCc-CCCCceEEEEEeecCCccceeEEEEEEEE
Q 018168 195 DYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKL-WNDEEVFVGLSSSNRNSSQICNLYSWSFK 258 (360)
Q Consensus 195 ~Yd~~~~~L~V~l~~~~~~kp~~p~ls~~vdLs~~-l~~~~~yvGFSAsTG~~~~~h~I~sWsF~ 258 (360)
+|-+ ++|+|.+... . .|. +-....++...+ |+. .-|+|.||+||++..-|+|++..-.
T Consensus 195 tY~~--nvLtv~innG-m-tp~-d~yE~C~rve~~~lp~-nGyFGvSAATGgLADDHDVl~Fltf 253 (497)
T KOG3838|consen 195 TYYG--NVLTVMINNG-M-TPS-DDYEFCVRVENLLLPP-NGYFGVSAATGGLADDHDVLSFLTF 253 (497)
T ss_pred EEec--cEEEEEEcCC-C-CCC-CCcceeEeccceeccC-CCeeeeeecccccccccceeeeEEe
Confidence 9998 6899988653 3 233 223344555555 565 8999999999999999999997543
No 11
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=99.03 E-value=2.3e-08 Score=92.59 Aligned_cols=183 Identities=13% Similarity=0.157 Sum_probs=106.8
Q ss_pred EEEeCCCCCCceEEEEecCCeeeecCCCCCceeeEEEEEEEEec---cCCCceEEEEecCCCCcCCCCCCCCCCCCCCCC
Q 018168 60 VVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSK---ENGDGLAFIMVPSGFNLSVSANTSFGLSPEMDK 136 (360)
Q Consensus 60 ~l~LT~~~~~~~G~v~y~~Pi~l~~~~~~~~aSFsT~F~F~I~~---~~gdGlAFvl~p~~~~~~~~~~~~~G~~lGl~n 136 (360)
.||||++..+|+|.+.|.++++-.+. -...+|.+.... .++|||||||+-...++ ..+..|+.|||.-
T Consensus 33 ~LRLT~~~~nqata~~~~~~FPs~~n------~v~veFd~yayg~~g~GADGia~vLsDasv~p---~~G~fGGsLGYa~ 103 (255)
T cd06900 33 RLRLTDASGNQATAVTLQRLFPSAGN------YVEVEFDYYAYGSGGNGADGVALVLSDASVTP---QAGAFGGSLGYAQ 103 (255)
T ss_pred eEEeccCccCcceeEEEeeeeccCCC------eEEEEEEEEEecCCCCCCceEEEEEeCCCcCC---cCCCcCccccccc
Confidence 69999999999999999999885321 367788887764 48999999998544322 2577899999953
Q ss_pred C-------CccEEEEEEeeccccccCCCCC----------CeeEEecCCccccee------ccccccceeecC------C
Q 018168 137 S-------KFRVVAVEFDTLRDVKYGDVNG----------NHVGIDVGSLVSVKV------SNVSSHNIVLNS------D 187 (360)
Q Consensus 137 ~-------~~~~vAVEFDT~~n~~~~Dp~~----------nHVgIdins~~S~~~------~~~~~~~~~l~~------G 187 (360)
. ....++|-||-|-|.. .+.+ +-|+|-=.+..-... ..+. ..++..+ +
T Consensus 104 ~~~~~~GfaGGwLGiGlDEyGNFs--n~~eg~~~~~g~r~~sV~vRGsg~g~~gY~yl~gt~~~~-~~id~~~~~~~~~~ 180 (255)
T cd06900 104 RNDGVPGFAGGWLGIGLDEYGNFS--NPNEGRNGFSGRRPQSVTVRGSGSGYTGYKYITGTGVLP-PGIDNNSTSTPAPG 180 (255)
T ss_pred ccCCCCccccceEEEEEecccccc--CCCCCccCCcccccceEEEECCCCCCcCceEecccCCCC-cccccCCCCCCCCc
Confidence 2 3478899999987741 2221 233332111100000 0010 0111111 2
Q ss_pred CeEEEEEEEeCC-CcEEEEEEEeCCCCCCCCceeeEEe---cCC--CcCCCCceEEEEEeecCCccceeEEEEEEE
Q 018168 188 KKLNSWIDYEAS-SKRLEVRLSYLDSAKPVDPLLSYPI---DLS--KLWNDEEVFVGLSSSNRNSSQICNLYSWSF 257 (360)
Q Consensus 188 ~~~~vwI~Yd~~-~~~L~V~l~~~~~~kp~~p~ls~~v---dLs--~~l~~~~~yvGFSAsTG~~~~~h~I~sWsF 257 (360)
..+++.||=... ...|+|.-+..+... ..+++ ..+ +.. .-+|+ ..+++|++|||.++..|+|-..+.
T Consensus 181 hrY~i~Ids~~~~~~~vsV~R~~~~gg~-~~~~I-~~~d~~~~~~q~avP~-~f~lS~TgSTGgstN~HEIdnf~V 253 (255)
T cd06900 181 HRYRITIDSTNGDNAWLSVERDIGNGGA-YFVVI-LTFDALAEQNQDAIPE-NFYLSFTGSTGGSTNTHEIDNFQV 253 (255)
T ss_pred eEEEEEEecCCCCceEEEEEEEccCCce-eEEee-cceeeccccCCCCCCc-cEEEEEEecCCCcccceeecceEe
Confidence 334444443322 233555544321111 11122 122 223 45777 999999999999999999987543
No 12
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=85.37 E-value=20 Score=29.78 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=53.4
Q ss_pred EEEEecCCeeeecCCCCCceeeEEEEEEEEeccCCCceEEEEecCCCCcCCCCCCCCCCCCCCCCCCccEEEEEEeeccc
Q 018168 72 GRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKENGDGLAFIMVPSGFNLSVSANTSFGLSPEMDKSKFRVVAVEFDTLRD 151 (360)
Q Consensus 72 G~v~y~~Pi~l~~~~~~~~aSFsT~F~F~I~~~~gdGlAFvl~p~~~~~~~~~~~~~G~~lGl~n~~~~~vAVEFDT~~n 151 (360)
|.+.|+.+... ...|+.+|.|+.. ..+|+-|.+.... ..+.+++|..-
T Consensus 8 ~~i~~~~~~~~-------~~~~~i~~~frt~--~~~g~l~~~~~~~--------------------~~~~~~l~l~~--- 55 (151)
T cd00110 8 SYVRLPTLPAP-------RTRLSISFSFRTT--SPNGLLLYAGSQN--------------------GGDFLALELED--- 55 (151)
T ss_pred ceEEecCCCCC-------cceeEEEEEEEeC--CCCeEEEEecCCC--------------------CCCEEEEEEEC---
Confidence 45666654432 1357777777754 4589888775431 12456676651
Q ss_pred cccCCCCCCeeEEecCCcccceeccccccceeecCCCeEEEEEEEeCCCcEEEEEEEeC
Q 018168 152 VKYGDVNGNHVGIDVGSLVSVKVSNVSSHNIVLNSDKKLNSWIDYEASSKRLEVRLSYL 210 (360)
Q Consensus 152 ~~~~Dp~~nHVgIdins~~S~~~~~~~~~~~~l~~G~~~~vwI~Yd~~~~~L~V~l~~~ 210 (360)
.++.+.++.-.... ...... .+.+|++|++.|.+++ +.++++++..
T Consensus 56 --------g~l~~~~~~g~~~~--~~~~~~-~v~dg~Wh~v~i~~~~--~~~~l~VD~~ 101 (151)
T cd00110 56 --------GRLVLRYDLGSGSL--VLSSKT-PLNDGQWHSVSVERNG--RSVTLSVDGE 101 (151)
T ss_pred --------CEEEEEEcCCcccE--EEEccC-ccCCCCEEEEEEEECC--CEEEEEECCc
Confidence 13433333211100 011111 4789999999999998 5677777653
No 13
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=84.91 E-value=6.8 Score=44.01 Aligned_cols=127 Identities=24% Similarity=0.276 Sum_probs=79.1
Q ss_pred cCeEEecceEEe--cCCcEEEeCCCCCCceEEEEecCCeeeecCCC-----CCceeeEEEEEEEEeccCCCceEEEEecC
Q 018168 44 SSIALYGDAKVV--NGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNT-----GNLASFSTNFSFSMSKENGDGLAFIMVPS 116 (360)
Q Consensus 44 ~~l~l~GdA~v~--~~g~~l~LT~~~~~~~G~v~y~~Pi~l~~~~~-----~~~aSFsT~F~F~I~~~~gdGlAFvl~p~ 116 (360)
+.|.++|...+. ..+ .++|..-.....+|++-..|+.++...+ .-.+.|+..|-|+......||| ++.+.
T Consensus 804 ~~LvFNG~~Yld~~K~~-~~~ls~l~a~fkl~~iv~~paTf~sk~Sy~~la~L~ay~s~~l~Fqfkt~sp~gl--l~fn~ 880 (1591)
T KOG3514|consen 804 SGLVFNGQDYLDKCKMG-DIQLSELSARFKLRAIVADPATFKSKSSYVKLATLQAYFSMHLFFQFKTTSPDGL--LLFNS 880 (1591)
T ss_pred hheEECcHHHHHHHhcC-CcchhhcchhhCceEEeeccceeeechhhhhhhhhheeeEEEEEEEEeecCCCeE--EEecC
Confidence 579999988765 223 3888776667788999999998875542 2346788888887765567774 34443
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCccEEEEEEeeccccccCCCCCCeeEEecC-CcccceeccccccceeecCCCeEEEEEE
Q 018168 117 GFNLSVSANTSFGLSPEMDKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDVG-SLVSVKVSNVSSHNIVLNSDKKLNSWID 195 (360)
Q Consensus 117 ~~~~~~~~~~~~G~~lGl~n~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdin-s~~S~~~~~~~~~~~~l~~G~~~~vwI~ 195 (360)
+. -|.++|||.=--+ =|--.|++ +..+.+- .....|+|.++|+|-|.
T Consensus 881 gd-------------------~ndfi~velvnG~---------ihYtfdlg~gp~~~k~----~sr~hlnDnrWHnV~I~ 928 (1591)
T KOG3514|consen 881 GD-------------------GNDFIAVELVNGY---------IHYTFDLGNGPTSMKG----PSRQHLNDNRWHNVLIY 928 (1591)
T ss_pred CC-------------------CCceEEEEEeCcE---------EEEEEEcCCCcccccC----cccCcCccccceeEEEE
Confidence 21 2578999864211 13334442 2222221 12456888999999998
Q ss_pred EeCCC-cEEEE
Q 018168 196 YEASS-KRLEV 205 (360)
Q Consensus 196 Yd~~~-~~L~V 205 (360)
-|... +.|.|
T Consensus 929 rd~~~~HtL~v 939 (1591)
T KOG3514|consen 929 RDKTNTHTLKV 939 (1591)
T ss_pred cCCCCceEEEe
Confidence 88543 44544
No 14
>smart00282 LamG Laminin G domain.
Probab=84.12 E-value=22 Score=29.27 Aligned_cols=26 Identities=12% Similarity=0.159 Sum_probs=20.9
Q ss_pred eeecCCCeEEEEEEEeCCCcEEEEEEEe
Q 018168 182 IVLNSDKKLNSWIDYEASSKRLEVRLSY 209 (360)
Q Consensus 182 ~~l~~G~~~~vwI~Yd~~~~~L~V~l~~ 209 (360)
..+++|++|++.|.+++ +.++++++.
T Consensus 57 ~~~~dg~WH~v~i~~~~--~~~~l~VD~ 82 (135)
T smart00282 57 TPLNDGQWHRVAVERNG--RRVTLSVDG 82 (135)
T ss_pred eEeCCCCEEEEEEEEeC--CEEEEEECC
Confidence 46889999999999997 456666664
No 15
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=83.45 E-value=2.4 Score=39.37 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=35.9
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHhhHhcCCCccccccccccCceeeeeeeeeeehhhh
Q 018168 297 VLGALIFGTACGALGASIVLYLWTIFANKRPVVPVTEECAVHLADFEYEKFKVLVDKAV 355 (360)
Q Consensus 297 ~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~~~~~~e~~~~~P~~f~Yk~l~~~~~~~~ 355 (360)
+++++++++.++.+.+|+++-+|+.|+++.+.-+ |..+.+|.. .-+-+|+.+.|.+
T Consensus 189 vilpvvIaliVitl~vf~LvgLyr~C~k~dPg~p--~~g~~qpqs-dke~vklltvkt~ 244 (259)
T PF07010_consen 189 VILPVVIALIVITLSVFTLVGLYRMCWKTDPGTP--ENGPDQPQS-DKESVKLLTVKTI 244 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc--ccCCCCCCc-cccceeEEEEEec
Confidence 3455555555556677777778888888887767 777777763 1223555555554
No 16
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=81.34 E-value=2 Score=36.39 Aligned_cols=15 Identities=33% Similarity=0.762 Sum_probs=9.2
Q ss_pred hhhHHHHhHHHHHHH
Q 018168 298 LGALIFGTACGALGA 312 (360)
Q Consensus 298 ~~~~~~~~~~~al~~ 312 (360)
.+++++|+.|+++++
T Consensus 66 i~~Ii~gv~aGvIg~ 80 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHH
Confidence 356677776666543
No 17
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=76.88 E-value=0.85 Score=34.07 Aligned_cols=13 Identities=46% Similarity=0.652 Sum_probs=0.0
Q ss_pred hhhHHHHhHHHHH
Q 018168 298 LGALIFGTACGAL 310 (360)
Q Consensus 298 ~~~~~~~~~~~al 310 (360)
++|+|.|.+++++
T Consensus 11 laavIaG~Vvgll 23 (64)
T PF01034_consen 11 LAAVIAGGVVGLL 23 (64)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3555555444443
No 18
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=76.30 E-value=0.59 Score=31.69 Aligned_cols=25 Identities=8% Similarity=0.251 Sum_probs=11.2
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHHH
Q 018168 296 KVLGALIFGTACGALGASIVLYLWT 320 (360)
Q Consensus 296 ~~~~~~~~~~~~~al~~~~~l~~~~ 320 (360)
.+..|+++..+.+++++.++||+|+
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~~~~ 36 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLFFWY 36 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhheEE
Confidence 3444444444444444444444554
No 19
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=74.53 E-value=3.3 Score=39.99 Aligned_cols=35 Identities=23% Similarity=0.063 Sum_probs=21.4
Q ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHhhHhcCCCc
Q 018168 295 LKVLGALIFGTACGALGASIVLYLWTIFANKRPVV 329 (360)
Q Consensus 295 ~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~~~ 329 (360)
.-|++++.+|.+|+++.+.+.+.+.+++|||.+..
T Consensus 228 ~VVlIslAiALG~v~ll~l~Gii~~~~~r~~~~~~ 262 (281)
T PF12768_consen 228 FVVLISLAIALGTVFLLVLIGIILAYIRRRRQGYV 262 (281)
T ss_pred EEEEEehHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 44556667777777766666655655555555443
No 20
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=66.71 E-value=1.4 Score=38.69 Aligned_cols=11 Identities=9% Similarity=0.419 Sum_probs=5.8
Q ss_pred hhhhhHHHHhH
Q 018168 296 KVLGALIFGTA 306 (360)
Q Consensus 296 ~~~~~~~~~~~ 306 (360)
.+++|+++|.+
T Consensus 49 nIVIGvVVGVG 59 (154)
T PF04478_consen 49 NIVIGVVVGVG 59 (154)
T ss_pred cEEEEEEeccc
Confidence 34555566643
No 21
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=66.54 E-value=8 Score=30.14 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=20.4
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHHhhHhcCC
Q 018168 294 LLKVLGALIFGTACGALGASIVLYLWTIFANKRP 327 (360)
Q Consensus 294 ~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~ 327 (360)
-..+++|+++|=+.+.+.++.+.|.+.+.|+|++
T Consensus 32 s~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~ 65 (79)
T PF07213_consen 32 SPGLLAGIVAADAVLTLLIVLVVYYCARPRRRPT 65 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCc
Confidence 3556788777755555555556566665555444
No 22
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=65.78 E-value=2.7 Score=40.41 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=13.1
Q ss_pred CCCcchhhhhhhHHHHhHHHHH
Q 018168 289 KRSDCLLKVLGALIFGTACGAL 310 (360)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~al 310 (360)
+++...|++++|++.|++.+.|
T Consensus 207 ~~~~~~W~iv~g~~~G~~~L~l 228 (278)
T PF06697_consen 207 RKRSWWWKIVVGVVGGVVLLGL 228 (278)
T ss_pred CCcceeEEEEEEehHHHHHHHH
Confidence 4555568877776666544333
No 23
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=64.35 E-value=9.7 Score=37.99 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.7
Q ss_pred ceEEEEEeecCCccceeEEEEEEEEecC
Q 018168 234 EVFVGLSSSNRNSSQICNLYSWSFKLRH 261 (360)
Q Consensus 234 ~~yvGFSAsTG~~~~~h~I~sWsF~~~~ 261 (360)
.+-|=|..++++.+..+..++|++..-.
T Consensus 280 ~~nvSFG~~gDgfY~~t~ylsWt~~~G~ 307 (350)
T PF15065_consen 280 GLNVSFGTSGDGFYWATNYLSWTFLIGY 307 (350)
T ss_pred EEEEEeccCCCCcccccceEEEEEeccc
Confidence 4778888888888999999999998753
No 24
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=62.87 E-value=8.7 Score=37.05 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhHhcCC
Q 018168 311 GASIVLYLWTIFANKRP 327 (360)
Q Consensus 311 ~~~~~l~~~~~~~~~~~ 327 (360)
+++++||+|.++|||++
T Consensus 273 vvliiLYiWlyrrRK~s 289 (295)
T TIGR01478 273 VVLIILYIWLYRRRKKS 289 (295)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 46678899997666553
No 25
>PTZ00370 STEVOR; Provisional
Probab=62.13 E-value=8.9 Score=37.05 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhHhcCC
Q 018168 311 GASIVLYLWTIFANKRP 327 (360)
Q Consensus 311 ~~~~~l~~~~~~~~~~~ 327 (360)
+++++||+|.++||+++
T Consensus 269 vvliilYiwlyrrRK~s 285 (296)
T PTZ00370 269 VVLIILYIWLYRRRKNS 285 (296)
T ss_pred HHHHHHHHHHHHhhcch
Confidence 46678889997666553
No 26
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=56.44 E-value=12 Score=36.46 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=14.2
Q ss_pred hHHHHhHHHHHHHHHHHHHHHhhHhcCC
Q 018168 300 ALIFGTACGALGASIVLYLWTIFANKRP 327 (360)
Q Consensus 300 ~~~~~~~~~al~~~~~l~~~~~~~~~~~ 327 (360)
+.+++.++++|..+++.++|+++|+|++
T Consensus 260 aSiiaIliIVLIMvIIYLILRYRRKKKm 287 (299)
T PF02009_consen 260 ASIIAILIIVLIMVIIYLILRYRRKKKM 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555555544444445665554553
No 27
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=55.61 E-value=23 Score=23.73 Aligned_cols=8 Identities=13% Similarity=0.646 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 018168 314 IVLYLWTI 321 (360)
Q Consensus 314 ~~l~~~~~ 321 (360)
+.++.|..
T Consensus 21 i~~~~YaC 28 (38)
T PF02439_consen 21 ICMFYYAC 28 (38)
T ss_pred HHHHHHHH
Confidence 33333443
No 28
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=45.70 E-value=14 Score=35.83 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=14.7
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHhhHhcC
Q 018168 296 KVLGALIFGTACGALGASIVLYLWTIFANKR 326 (360)
Q Consensus 296 ~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~ 326 (360)
..++++++|+++++ +++++|..|.+.|||.
T Consensus 270 ~~~vPIaVG~~La~-lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 270 SDLVPIAVGAALAG-LVLIVLIAYLIGRRRS 299 (306)
T ss_pred cchHHHHHHHHHHH-HHHHHHHhheeEeccc
Confidence 34567666654332 3444444555444443
No 29
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=45.23 E-value=41 Score=27.34 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=20.9
Q ss_pred CCCCcchhhhhhhHHHHhHHHHHHHHHHHHHHH
Q 018168 288 PKRSDCLLKVLGALIFGTACGALGASIVLYLWT 320 (360)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~ 320 (360)
.+.+..+|.|.+ +-++++.++++.++.||.++
T Consensus 11 PsGsL~PWeIfL-ItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 11 PSGSLKPWEIFL-ITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred cCCCccchHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 345567788765 34455556677788877766
No 30
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=41.64 E-value=8 Score=31.24 Aligned_cols=15 Identities=7% Similarity=0.288 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhHhcC
Q 018168 312 ASIVLYLWTIFANKR 326 (360)
Q Consensus 312 ~~~~l~~~~~~~~~~ 326 (360)
+.+++++|..++|||
T Consensus 81 ~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 81 GLVGFLCWWFVCRGK 95 (96)
T ss_pred HHHHHHhheeEEeec
Confidence 444444555444444
No 31
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=38.57 E-value=63 Score=22.64 Aligned_cols=32 Identities=31% Similarity=0.780 Sum_probs=16.1
Q ss_pred cchhhhhhhHHHHh-HHHHHHHHHHHHHHHhhHh
Q 018168 292 DCLLKVLGALIFGT-ACGALGASIVLYLWTIFAN 324 (360)
Q Consensus 292 ~~~~~~~~~~~~~~-~~~al~~~~~l~~~~~~~~ 324 (360)
+|.++.-+.+.+|. .|..+ ++.+.|.|..+++
T Consensus 2 DCvLRs~L~~~F~~lIC~Fl-~~~~~F~~F~~Kq 34 (54)
T PF06716_consen 2 DCVLRSYLLLAFGFLICLFL-FCLVVFIWFVYKQ 34 (54)
T ss_pred chHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 35666555445553 23333 4445566765543
No 32
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=37.70 E-value=34 Score=31.79 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=13.4
Q ss_pred hhhhhhHHHHhHHHHHHHHHHHHH
Q 018168 295 LKVLGALIFGTACGALGASIVLYL 318 (360)
Q Consensus 295 ~~~~~~~~~~~~~~al~~~~~l~~ 318 (360)
++|++|+|.|+..++|.+|++.++
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHH
Confidence 556667666665555545444333
No 33
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=35.69 E-value=41 Score=36.10 Aligned_cols=34 Identities=15% Similarity=0.387 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhHhcCCCcccccccc------ccC-----ceeeeeee
Q 018168 312 ASIVLYLWTIFANKRPVVPVTEECA------VHL-----ADFEYEKF 347 (360)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~e~~~------~~P-----~~f~Yk~l 347 (360)
+.++++.|.+||++|-++. -+-. .+| +-|.|.|.
T Consensus 284 ~Iiiil~~~LCRk~K~eFq--pDa~~niqqR~K~q~psVqGFD~AKq 328 (684)
T PF12877_consen 284 LIIIILYWKLCRKNKLEFQ--PDAMSNIQQRQKPQAPSVQGFDYAKQ 328 (684)
T ss_pred HHHHHHHHHHhcccccCCC--chhhhhcccccccCCCCcccccHHHH
Confidence 4444455777877776655 2221 255 57888765
No 34
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=31.61 E-value=3.3e+02 Score=30.26 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=16.6
Q ss_pred cCCccceeEEEEEEEEecCCCCcCCCC
Q 018168 243 NRNSSQICNLYSWSFKLRHVPHWMHSQ 269 (360)
Q Consensus 243 TG~~~~~h~I~sWsF~~~~~p~~~~s~ 269 (360)
+|..-+.-.=+-|+|.....-.|+...
T Consensus 226 ~G~Vk~~g~qLvWty~AphLGYWiAA~ 252 (807)
T PF10577_consen 226 LGMVKREGSQLVWTYIAPHLGYWIAAM 252 (807)
T ss_pred eEEEEeeCCEEEEEEECcccchhhhcc
Confidence 443333333457999988887776544
No 35
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=31.10 E-value=34 Score=28.81 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=8.0
Q ss_pred cCceeeeeeeeee
Q 018168 338 HLADFEYEKFKVL 350 (360)
Q Consensus 338 ~P~~f~Yk~l~~~ 350 (360)
+|.+.+|.+-+.+
T Consensus 89 ~~~q~d~Ak~ri~ 101 (118)
T PF01277_consen 89 GPDQLDYAKRRIA 101 (118)
T ss_pred CCccHHHHHHHHH
Confidence 5777777665443
No 36
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=30.97 E-value=5.9e+02 Score=29.58 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=32.2
Q ss_pred eecCCCeEEEEEEEeCCCcEEEEEEEeCCCCCCCCceeeEEecCCCcCCCCceEEE
Q 018168 183 VLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVG 238 (360)
Q Consensus 183 ~l~~G~~~~vwI~Yd~~~~~L~V~l~~~~~~kp~~p~ls~~vdLs~~l~~~~~yvG 238 (360)
..+||++|+|-++-|+.+..+.|--....- ..|=-+..+||. + +||+|
T Consensus 518 kv~DGeWhhv~l~R~gR~gsvsVd~~~~df---~tpG~s~iL~ld----~-~mylG 565 (1591)
T KOG3514|consen 518 KVNDGEWHHVDLQRDGRTGSVSVDAIKTDF---STPGDSEILDLD----D-PMYLG 565 (1591)
T ss_pred cccCCceEEEEeeccCccceEEEeeeecCc---cCCCcceeEeec----C-ceeec
Confidence 467999999999999988777764333221 223345556663 3 88888
No 37
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=30.81 E-value=51 Score=32.89 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=13.1
Q ss_pred HHHhHHHHHHHHHHHHHHHhhHhcCC
Q 018168 302 IFGTACGALGASIVLYLWTIFANKRP 327 (360)
Q Consensus 302 ~~~~~~~al~~~~~l~~~~~~~~~~~ 327 (360)
++|.++++| +.+.+|+-.|||||++
T Consensus 316 iIAIvvIVL-IMvIIYLILRYRRKKK 340 (353)
T TIGR01477 316 IIAILIIVL-IMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhhcch
Confidence 334333333 5566666666666553
No 38
>PTZ00046 rifin; Provisional
Probab=30.73 E-value=51 Score=32.96 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=13.0
Q ss_pred HHHhHHHHHHHHHHHHHHHhhHhcCC
Q 018168 302 IFGTACGALGASIVLYLWTIFANKRP 327 (360)
Q Consensus 302 ~~~~~~~al~~~~~l~~~~~~~~~~~ 327 (360)
+++.++++| +.+.+|+-.||||+++
T Consensus 321 iiAIvVIVL-IMvIIYLILRYRRKKK 345 (358)
T PTZ00046 321 IVAIVVIVL-IMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhhcch
Confidence 334333333 5566666666666553
No 39
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.19 E-value=87 Score=23.16 Aligned_cols=27 Identities=4% Similarity=0.001 Sum_probs=15.0
Q ss_pred hHHHHhHHHHHHHHHHHHHHHhhHhcC
Q 018168 300 ALIFGTACGALGASIVLYLWTIFANKR 326 (360)
Q Consensus 300 ~~~~~~~~~al~~~~~l~~~~~~~~~~ 326 (360)
+.+-+.+.+++..|++.++|..+|+++
T Consensus 8 ~~a~a~~t~~~~l~fiavi~~ayr~~~ 34 (60)
T COG4736 8 GFADAWGTIAFTLFFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334444555666666666666565544
No 40
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=28.65 E-value=18 Score=30.71 Aligned_cols=17 Identities=6% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHhcCC
Q 018168 311 GASIVLYLWTIFANKRP 327 (360)
Q Consensus 311 ~~~~~l~~~~~~~~~~~ 327 (360)
+++.++.+|+++|||++
T Consensus 93 ~llsg~lv~rrcrrr~~ 109 (129)
T PF12191_consen 93 ALLSGFLVWRRCRRREK 109 (129)
T ss_dssp -----------------
T ss_pred HHHHHHHHHhhhhcccc
Confidence 33334445666666655
No 41
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=28.55 E-value=78 Score=23.56 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=12.8
Q ss_pred HHHhHHHHHHHHHHHHHHHhhHhc
Q 018168 302 IFGTACGALGASIVLYLWTIFANK 325 (360)
Q Consensus 302 ~~~~~~~al~~~~~l~~~~~~~~~ 325 (360)
+++..+.++++++.++.+.+++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~ry~~~ 70 (73)
T PF02656_consen 47 VLGLLLIVLGLLTLIYGIYRYRRR 70 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555566666655555443
No 42
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=28.42 E-value=19 Score=37.03 Aligned_cols=9 Identities=22% Similarity=0.973 Sum_probs=5.0
Q ss_pred EEEEEEEEe
Q 018168 251 NLYSWSFKL 259 (360)
Q Consensus 251 ~I~sWsF~~ 259 (360)
.+..|..+.
T Consensus 293 hv~aW~yt~ 301 (439)
T PF02480_consen 293 HVEAWTYTL 301 (439)
T ss_dssp EEEEEEEEE
T ss_pred eeeeeEEEE
Confidence 355666653
No 43
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=28.07 E-value=83 Score=26.72 Aligned_cols=10 Identities=20% Similarity=0.727 Sum_probs=6.6
Q ss_pred EEEEEecCCC
Q 018168 254 SWSFKLRHVP 263 (360)
Q Consensus 254 sWsF~~~~~p 263 (360)
-|.|+++.+.
T Consensus 24 lW~fR~ED~t 33 (125)
T PF15048_consen 24 LWFFRVEDAT 33 (125)
T ss_pred HHheecCCCC
Confidence 4777776653
No 44
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=27.27 E-value=83 Score=25.11 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=5.2
Q ss_pred HHhHHHHHHHHHH
Q 018168 303 FGTACGALGASIV 315 (360)
Q Consensus 303 ~~~~~~al~~~~~ 315 (360)
+.++|+.+...+.
T Consensus 37 ~lvI~~iFil~Vi 49 (94)
T PF05393_consen 37 FLVICGIFILLVI 49 (94)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444333334
No 45
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=26.39 E-value=1.4e+02 Score=23.95 Aligned_cols=10 Identities=30% Similarity=0.149 Sum_probs=5.7
Q ss_pred ccccccccCc
Q 018168 331 VTEECAVHLA 340 (360)
Q Consensus 331 ~~e~~~~~P~ 340 (360)
.+||...|+.
T Consensus 73 sTeEigFG~t 82 (91)
T PF01708_consen 73 STEEIGFGNT 82 (91)
T ss_pred ceeeeeeCCC
Confidence 3477765443
No 46
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=25.30 E-value=1.8e+02 Score=23.79 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=18.4
Q ss_pred cchhhhhhhHHHHhHHHHHHHHHH--HHHHHhhHh
Q 018168 292 DCLLKVLGALIFGTACGALGASIV--LYLWTIFAN 324 (360)
Q Consensus 292 ~~~~~~~~~~~~~~~~~al~~~~~--l~~~~~~~~ 324 (360)
.+-|..++|+++++.+.-+.++++ +-+|+.++.
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~ 48 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLA 48 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 445888888887765543333322 334665443
No 47
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=24.74 E-value=84 Score=28.49 Aligned_cols=28 Identities=18% Similarity=0.015 Sum_probs=24.9
Q ss_pred eecCCCeEEEEEEEeCCCcEEEEEEEeC
Q 018168 183 VLNSDKKLNSWIDYEASSKRLEVRLSYL 210 (360)
Q Consensus 183 ~l~~G~~~~vwI~Yd~~~~~L~V~l~~~ 210 (360)
.+.+|+++++-+.||+.+.++++|++..
T Consensus 86 ~~~~g~W~hvc~tw~~~~g~~~lyvnG~ 113 (206)
T smart00159 86 PESDGKWHHICTTWESSSGIAELWVDGK 113 (206)
T ss_pred cccCCceEEEEEEEECCCCcEEEEECCE
Confidence 4678999999999999999999999764
No 48
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=24.32 E-value=98 Score=25.73 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=21.7
Q ss_pred CCeEEEEEEEeCCCcEEEEEEEeC
Q 018168 187 DKKLNSWIDYEASSKRLEVRLSYL 210 (360)
Q Consensus 187 G~~~~vwI~Yd~~~~~L~V~l~~~ 210 (360)
|+++++.+.||+.+..+++|++..
T Consensus 61 ~~W~hva~v~d~~~g~~~lYvnG~ 84 (133)
T smart00560 61 GVWVHLAGVYDGGAGKLSLYVNGV 84 (133)
T ss_pred CCEEEEEEEEECCCCeEEEEECCE
Confidence 889999999999989999999753
No 49
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=23.76 E-value=87 Score=26.91 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=12.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhHhcC
Q 018168 301 LIFGTACGALGASIVLYLWTIFANKR 326 (360)
Q Consensus 301 ~~~~~~~~al~~~~~l~~~~~~~~~~ 326 (360)
+++|.++++++-+++.++|.++++||
T Consensus 125 ~i~~~v~~~i~Y~l~~~~~~~~r~~r 150 (154)
T PF09835_consen 125 LILGIVLGIISYFLVYFLVRKYRKRR 150 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555566555444
No 50
>PF15102 TMEM154: TMEM154 protein family
Probab=23.17 E-value=36 Score=29.66 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=4.2
Q ss_pred hhhhhhhHH
Q 018168 294 LLKVLGALI 302 (360)
Q Consensus 294 ~~~~~~~~~ 302 (360)
++-|++++|
T Consensus 58 iLmIlIP~V 66 (146)
T PF15102_consen 58 ILMILIPLV 66 (146)
T ss_pred EEEEeHHHH
Confidence 344555543
No 51
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=21.93 E-value=1.3e+02 Score=21.46 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhHhc
Q 018168 312 ASIVLYLWTIFANK 325 (360)
Q Consensus 312 ~~~~l~~~~~~~~~ 325 (360)
..+++.+|.+.+|.
T Consensus 40 l~~~~~~~~~~~~~ 53 (55)
T PF03988_consen 40 LAVVLALWYRSKRY 53 (55)
T ss_pred HHHHHHHHHHHhcc
Confidence 33444456654443
No 52
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.77 E-value=87 Score=25.24 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=9.2
Q ss_pred CCCCchhHHHHHHHHHHHHHH
Q 018168 1 MATFFMSRYFATLTLLIFHFQ 21 (360)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (360)
|| ++.+.|+.++|.++||+
T Consensus 1 Ma--SK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 1 MA--SKAFLLLGLLLAALLLI 19 (95)
T ss_pred Cc--hhHHHHHHHHHHHHHHH
Confidence 77 45555555444343333
No 53
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=21.48 E-value=3.2e+02 Score=21.83 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=30.8
Q ss_pred ecCCCeEEEEEEEeCCCcEEEEEEEeCCCCCCCCceeeEEecCCCcCCCCceEEEEEe
Q 018168 184 LNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSS 241 (360)
Q Consensus 184 l~~G~~~~vwI~Yd~~~~~L~V~l~~~~~~kp~~p~ls~~vdLs~~l~~~~~yvGFSA 241 (360)
|+..+....||.++. ..++|.... ...|+|+.. |-.. . +--|||||+
T Consensus 49 ls~~e~~~fwI~~~~--G~I~vg~~g-----~~~pfl~~~-Dp~~--~-~v~yvGft~ 95 (102)
T PF12248_consen 49 LSPSEFRMFWISWRD--GTIRVGRGG-----EDEPFLEWT-DPEP--I-PVNYVGFTG 95 (102)
T ss_pred CCCCccEEEEEEECC--CEEEEEECC-----CccEEEEEE-CCCC--C-cccEEEEec
Confidence 456788899999776 567776643 235788765 3321 1 367999953
No 54
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=20.82 E-value=1.2e+02 Score=27.40 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=24.1
Q ss_pred ecCCCeEEEEEEEeCCCcEEEEEEEeC
Q 018168 184 LNSDKKLNSWIDYEASSKRLEVRLSYL 210 (360)
Q Consensus 184 l~~G~~~~vwI~Yd~~~~~L~V~l~~~ 210 (360)
..+|+++++-+.||+.+.++++|++..
T Consensus 87 ~~~g~W~hv~~t~d~~~g~~~lyvnG~ 113 (201)
T cd00152 87 ESDGAWHHICVTWESTSGIAELWVNGK 113 (201)
T ss_pred CCCCCEEEEEEEEECCCCcEEEEECCE
Confidence 368999999999999999999999764
No 55
>PF09301 DUF1970: Domain of unknown function (DUF1970); InterPro: IPR015380 This entry is represented by Bacteriophage PRD1, P16; it is a family of uncharacterised viral proteins.; PDB: 1W8X_P.
Probab=20.75 E-value=95 Score=24.63 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=9.8
Q ss_pred HHHHHhhHhcCC-Ccccccccccc
Q 018168 316 LYLWTIFANKRP-VVPVTEECAVH 338 (360)
Q Consensus 316 l~~~~~~~~~~~-~~~~~e~~~~~ 338 (360)
+++|..||+|-. .+. ..||+-
T Consensus 17 iliwlwfrnrpaaqva--snwegp 38 (117)
T PF09301_consen 17 ILIWLWFRNRPAAQVA--SNWEGP 38 (117)
T ss_dssp HHHHHHHHHTT-S-SS---TT---
T ss_pred HHHHHHHccChHHHHh--hcCCCC
Confidence 346777777764 444 677653
No 56
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=20.66 E-value=79 Score=27.05 Aligned_cols=13 Identities=15% Similarity=0.056 Sum_probs=7.0
Q ss_pred CCccceeEEEEEE
Q 018168 244 RNSSQICNLYSWS 256 (360)
Q Consensus 244 G~~~~~h~I~sWs 256 (360)
|.--|.-.+.+|+
T Consensus 77 GeRCEh~dLl~~~ 89 (139)
T PHA03099 77 GIRCQHVVLVDYQ 89 (139)
T ss_pred cccccceeeeeee
Confidence 4444555555665
Done!