Query 018169
Match_columns 360
No_of_seqs 133 out of 310
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:01:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.6 2.6E-13 9E-18 134.0 23.8 333 9-351 11-352 (460)
2 3mkt_A Multi antimicrobial ext 95.7 0.87 3E-05 43.7 19.4 159 10-178 238-410 (460)
3 3q12_A Pantoate--beta-alanine 2.3 9.7E+02 0.033 21.7 2.7 24 246-269 43-66 (287)
4 2ec3_A Fibronectin; complement 2.2 3.5E+02 0.012 19.1 -0.4 13 347-359 30-42 (68)
5 2oo9_A E3 ubiquitin-protein li 2.1 7.3E+02 0.025 16.1 1.1 17 62-78 15-31 (46)
6 1muk_A Minor core protein lamb 2.1 5.3E+02 0.018 27.6 0.6 31 255-285 884-914 (1267)
7 3u1f_A Methionyl-tRNA syntheta 2.0 1.4E+03 0.049 21.8 3.7 39 307-345 459-497 (542)
8 3inn_A Pantothenate synthetase 2.0 1.3E+03 0.044 21.2 3.0 26 244-269 59-84 (314)
9 3hfe_A Potassium voltage-gated 1.9 6.5E+02 0.022 14.9 0.5 10 5-14 5-14 (31)
10 1fjk_A Cardiac phospholamban; 1.9 1.7E+03 0.058 14.2 2.8 46 60-109 4-49 (52)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.58 E-value=2.6e-13 Score=133.96 Aligned_cols=333 Identities=12% Similarity=0.038 Sum_probs=216.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccchhhH
Q 018169 9 STSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENA 88 (360)
Q Consensus 9 ~~~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr~~~~~~~~~~~~~~ 88 (360)
-+++.+.+.++++.++...+.+++-+.++.| ++|+++|.+++...+.. ....+. .++..+..+.-......+|++..
T Consensus 11 ~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~-~~~~~~-~g~~~~~~~~is~~~g~~~~~~~ 87 (460)
T 3mkt_A 11 ASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWL-PSILFG-VGLLMALVPVVAQLNGAGRQHKI 87 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHH-HHHHHH-HHHHHHHGGGCTTTTSSSSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHcCCChhHH
Confidence 3567888889999999999999999999999 89999999998877533 333333 47777776532222112222334
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhh-ccccCCch--h---hHHHHHHHHHHHHhhhhhHHHHHHHhHhHHHHHHH
Q 018169 89 AKLLKVAWL-TLPLGIFITIGACFFVLWWQ-GLSYSNPY--A---QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV 161 (360)
Q Consensus 89 ~~~~n~awl-~i~~g~~~~~~~~~~~~~~~-~~~~~~~~--~---~~~~~~~ls~iie~l~eP~~~~~qr~l~~~~r~~~ 161 (360)
++..+.+.. .+..+++++++ ..+ ..+. .....++. . ..+.+++.+.+...+........|-+-+.+.-...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (460)
T 3mkt_A 88 PFEVHQGLILALLVSVPIIAV-LFQ-TQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI 165 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHH-HHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 455555543 44555554432 111 2221 11122332 1 23455666777777777776667777778888888
Q ss_pred HHHHHHHHHHHHHHHHHh-cc-CchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccCCCcccCcccccHHHHHHHH
Q 018169 162 ETVATFSRCFTMCILIVK-QY-EMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCT 239 (360)
Q Consensus 162 E~~a~~~~~~~~v~l~~~-~~-~~~a~~~fa~gql~~s~~~~~~y~~~~~~~~~~~~~~~~P~r~~~~~~~~~~ll~~~~ 239 (360)
...+.+++.+..+.++.. .. ..+++.+.+++..+..+...+.++.+..+....+..+..+...+.+...-|++++++.
T Consensus 166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (460)
T 3mkt_A 166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245 (460)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence 888888888887776543 10 1245555555555543333222222222111100000111100112233479999999
Q ss_pred HHHHHHHHHHHHhhhceeeeEeccCCCcchhhhHhhhhhhHHHHHHHhhhhhchHHHHHhhhcCCCchhhhHHHHHHHHH
Q 018169 240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA 319 (360)
Q Consensus 240 ~~~~qsi~k~lltegDk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~Piee~~~~~Fs~~~~~~~~~~~~~~~~~l~~~ 319 (360)
+.+.+++...+....|+.+++.+ +.++.|.|++++++.+++. .+...+..+..|..++...+++++ +.++.+...
T Consensus 246 p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~~---~~~~~~~~~ 320 (460)
T 3mkt_A 246 PVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTK---GAAIAANVG 320 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCC---TTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHH---HHHHHHHHH
Confidence 99999999999999999999999 8999999999999999887 788889999999999998765444 344555557
Q ss_pred HHHHHHHHHHHHHhcccChHHHHHHHhcCCcC
Q 018169 320 LKLVLLIGMFFIELKFSLPIYEFNFVVKGICL 351 (360)
Q Consensus 320 L~~~~~lgl~~~~~G~~~s~~ll~~llG~kW~ 351 (360)
++....+++++...-...+++++++..+++..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 352 (460)
T 3mkt_A 321 LMTGLATACITALLTVLFREQIALLYTENQVV 352 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 77777777776666666799999987776643
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=95.70 E-value=0.87 Score=43.73 Aligned_cols=159 Identities=13% Similarity=-0.027 Sum_probs=91.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHh----c--ccCCCCcc
Q 018169 10 TSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMR----A--DIKCDGAS 83 (360)
Q Consensus 10 ~~~~~g~~~li~~q~~srlltF~~n~iL~R~LsP~~fGi~av~l~l~~~tvlflsre~~r~a~lr----~--~~~~~~~~ 83 (360)
++..+-.......++...+...+.|.++.+. ++++.|..++...+..... .+. .++..+..- . +++.++.
T Consensus 238 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~-~~~~~a~~p~i~~~~g~~~~~~~- 313 (460)
T 3mkt_A 238 IRLFRLGFPVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFP-MSIGAAVSIRVGHKLGEQDTKGA- 313 (460)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHSSCCCTT-
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHcCCCHHHH-
Confidence 3455656677777887777777777777666 9999998888776543333 222 256555541 1 1111111
Q ss_pred chhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh-hccccCCch-----hhHHHHHHHHHHHHhhhhhHHHHHHHhHhHH
Q 018169 84 REENAAKLLKV-AWLTLPLGIFITIGACFFVLWW-QGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLR 156 (360)
Q Consensus 84 ~~~~~~~~~n~-awl~i~~g~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~ls~iie~l~eP~~~~~qr~l~~~ 156 (360)
++..+. ...+..+++++++++..+ ..+ .....+|+. ...+.+++++.++.++..+.....|-.-+.+
T Consensus 314 -----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 387 (460)
T 3mkt_A 314 -----AIAANVGLMTGLATACITALLTVLF-REQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMT 387 (460)
T ss_dssp -----TTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 112222 222333444444433322 111 123334432 2466888899999999988877777777777
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHH
Q 018169 157 LRLVVETVAT-FSRCFTMCILIV 178 (360)
Q Consensus 157 ~r~~~E~~a~-~~~~~~~v~l~~ 178 (360)
.-......+. +++....+.+..
T Consensus 388 ~~~~~~~~~~~~~~i~l~~~l~~ 410 (460)
T 3mkt_A 388 AIFHRTFISYWVLGLPTGYILGM 410 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777766 666666665543
No 3
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=2.28 E-value=9.7e+02 Score=21.67 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=19.4
Q ss_pred HHHHHHhhhceeeeEeccCCCcch
Q 018169 246 FRKLLLQEGEKLVLVWLDTPYNQA 269 (360)
Q Consensus 246 i~k~lltegDk~vl~~~~~~~~qG 269 (360)
+++..-.++|..|++-|..+.+.|
T Consensus 43 Lv~~Ar~~~d~vVVSIFVNP~QF~ 66 (287)
T 3q12_A 43 LVDEAKTRADVVVVTIFVNPLQFE 66 (287)
T ss_dssp HHHHHHTTSSEEEEEECCCGGGCS
T ss_pred HHHHHHHhCCEEEEEeccCcccCC
Confidence 456667899999999999876666
No 4
>2ec3_A Fibronectin; complement module, two disulfide bonds, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=2.16 E-value=3.5e+02 Score=19.14 Aligned_cols=13 Identities=15% Similarity=-0.156 Sum_probs=7.4
Q ss_pred cCCcCccchhccc
Q 018169 347 KGICLTISVIGYM 359 (360)
Q Consensus 347 G~kW~~~~~~~~~ 359 (360)
|+||..++.-++|
T Consensus 30 Ge~W~r~~e~G~m 42 (68)
T 2ec3_A 30 GEKWDRQGENGQM 42 (68)
T ss_dssp TCEEEEECSSSSE
T ss_pred CceEeecccCCCE
Confidence 6666665554544
No 5
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=2.12 E-value=7.3e+02 Score=16.10 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=13.5
Q ss_pred HHhHHHHHHHHHhcccC
Q 018169 62 FLSREGFRRACMRADIK 78 (360)
Q Consensus 62 flsre~~r~a~lr~~~~ 78 (360)
=++|+.+++|+...+..
T Consensus 15 Gf~~~~~~rAL~ia~Nn 31 (46)
T 2oo9_A 15 GYSYQDIQKALVIAQNN 31 (46)
T ss_dssp TBCHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHhhcc
Confidence 36899999999987654
No 6
>1muk_A Minor core protein lambda 3; single subunit polymerase fold, fingers, PALM, thumb, right hand configuration, viral protein; 2.50A {Reovirus SP} SCOP: e.8.1.4 PDB: 1mwh_A* 1n1h_A* 1n35_A* 1n38_A* 1uon_A* 2cse_1
Probab=2.10 E-value=5.3e+02 Score=27.65 Aligned_cols=31 Identities=13% Similarity=0.407 Sum_probs=25.8
Q ss_pred ceeeeEeccCCCcchhhhHhhhhhhHHHHHH
Q 018169 255 EKLVLVWLDTPYNQAVYGLVDKLGSLVVRMV 285 (360)
Q Consensus 255 Dk~vl~~~~~~~~qG~Y~la~nlgsl~aR~l 285 (360)
|-++.+.+.|..|||.|++.++.--++++..
T Consensus 884 ~P~i~S~YMP~GD~G~ys~l~~~r~~i~~~~ 914 (1267)
T 1muk_A 884 DPWIFSWYMPTGDLGMYSWISLIRPLMTRWM 914 (1267)
T ss_dssp CTTCBCTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeeeccCCCchhHHHHHHHHHHHHHHHh
Confidence 5577788889999999999999988877553
No 7
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=1.99 E-value=1.4e+03 Score=21.83 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Q 018169 307 QKSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFV 345 (360)
Q Consensus 307 ~~~~~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~l 345 (360)
+++++.+.++..++...-.++.+..||-|..|+.+.+.|
T Consensus 459 ~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~L 497 (542)
T 3u1f_A 459 TDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDML 497 (542)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHC
No 8
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=1.97 E-value=1.3e+03 Score=21.18 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhceeeeEeccCCCcch
Q 018169 244 QSFRKLLLQEGEKLVLVWLDTPYNQA 269 (360)
Q Consensus 244 qsi~k~lltegDk~vl~~~~~~~~qG 269 (360)
.++++....++|..+++.|..+.+.|
T Consensus 59 lsLi~~A~~~~d~vVVSIFVNP~QF~ 84 (314)
T 3inn_A 59 LELVRRARVENDVTLVSIFVNPLQFG 84 (314)
T ss_dssp HHHHHHHHHHCSEEEEEECCCGGGSC
T ss_pred HHHHHHHHHhCCEEEEEECCChhhcC
No 9
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=1.88 E-value=6.5e+02 Score=14.87 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCCcchhhhH
Q 018169 5 PVDHSTSLSR 14 (360)
Q Consensus 5 ~~~~~~~~~~ 14 (360)
|+++|+|+-|
T Consensus 5 ~nTIGaRLnR 14 (31)
T 3hfe_A 5 SNTIGARLNR 14 (31)
T ss_dssp CCSHHHHHHH
T ss_pred cchHHHHHHH
No 10
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=1.87 E-value=1.7e+03 Score=14.24 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHhcccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 018169 60 VLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGA 109 (360)
Q Consensus 60 vlflsre~~r~a~lr~~~~~~~~~~~~~~~~~~n~awl~i~~g~~~~~~~ 109 (360)
+..+.|.++|+|-.-.-.++.+..-++- ++|+..+ ++.-+++.+++
T Consensus 4 vq~~trsairras~ie~~~qarqnlqel---fvnfcli-licllli~iiv 49 (52)
T 1fjk_A 4 VQYLTRSAIRRASTIEMPQQARQNLQNL---FINFCLI-LIFLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHSSSSHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHH---HHHHHHH-HHHHHHHHHHH
Done!