Query 018169
Match_columns 360
No_of_seqs 133 out of 310
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 11:01:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018169.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018169hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j2jb_ a.7.8.1 (B:) ADP-ribos 5.2 3.1E+02 0.023 15.8 3.2 20 296-315 10-29 (41)
2 d2d5ba1 a.27.1.1 (A:349-500) M 3.8 3.4E+02 0.025 19.5 3.4 36 310-345 84-119 (152)
3 d1co4a_ g.47.1.1 (A:) Zinc dom 3.8 72 0.0053 18.9 -0.7 12 346-357 5-16 (42)
4 d1pfva1 a.27.1.1 (A:389-550) M 3.7 3.6E+02 0.027 19.6 3.5 39 310-349 83-121 (162)
5 d1eg3a2 a.39.1.7 (A:210-306) D 3.6 4.4E+02 0.032 18.0 3.5 57 289-346 2-58 (97)
6 d2ifxa1 d.58.4.19 (A:1-108) Hy 3.0 2.1E+02 0.015 19.5 1.1 12 64-75 15-26 (108)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 2.8 2.3E+02 0.017 19.0 1.1 17 91-107 61-77 (91)
8 d1wb1a3 b.44.1.1 (A:272-387) E 2.7 2.4E+02 0.017 19.8 1.1 17 251-267 79-96 (116)
9 d1muka_ e.8.1.4 (A:) Reovirus 2.6 1.9E+02 0.014 28.1 0.6 33 255-287 883-915 (1264)
10 d1q90n_ f.23.27.1 (N:) PetN su 2.3 5.4E+02 0.039 13.5 3.3 11 91-101 5-15 (31)
No 1
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.20 E-value=3.1e+02 Score=15.78 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=13.2
Q ss_pred HHHhhhcCCCchhhhHHHHH
Q 018169 296 TFARSASGQYPQKSKKIGNS 315 (360)
Q Consensus 296 ~Fs~~~~~~~~~~~~~~~~~ 315 (360)
..++++.+++|++.|.+-+.
T Consensus 10 lL~~LLkS~~PeDLqaANrL 29 (41)
T d1j2jb_ 10 MLARLLKSSHPEDLRAANKL 29 (41)
T ss_dssp HHHHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHH
Confidence 45677888878776654443
No 2
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=3.81 E-value=3.4e+02 Score=19.49 Aligned_cols=36 Identities=3% Similarity=-0.113 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Q 018169 310 KKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFV 345 (360)
Q Consensus 310 ~~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~l 345 (360)
++.+.++...+...-.++.+.-||-|..+..+...+
T Consensus 84 ~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~L 119 (152)
T d2d5ba1 84 EEARAVLYRVVEGLRIASILLTPAMPDKMAELRRAL 119 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHc
Confidence 456677777788888888888899999999998874
No 3
>d1co4a_ g.47.1.1 (A:) Zinc domain conserved in yeast copper-regulated transcription factors {Synthetic}
Probab=3.76 E-value=72 Score=18.93 Aligned_cols=12 Identities=17% Similarity=-0.263 Sum_probs=9.5
Q ss_pred hcCCcCccchhc
Q 018169 346 VKGICLTISVIG 357 (360)
Q Consensus 346 lG~kW~~~~~~~ 357 (360)
=|+||+-++||-
T Consensus 5 ~g~KyAC~~CIR 16 (42)
T d1co4a_ 5 NGVKYACDSCIK 16 (42)
T ss_dssp TTEEEEETTTTT
T ss_pred CCeeEeHhhhhC
Confidence 378999888874
No 4
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=3.66 E-value=3.6e+02 Score=19.56 Aligned_cols=39 Identities=8% Similarity=0.050 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHhcCC
Q 018169 310 KKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVVKGI 349 (360)
Q Consensus 310 ~~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~llG~k 349 (360)
++....+...+...-.++...-||-|..|..+... +|..
T Consensus 83 ~~~~~vl~~~~~~lr~~~~lL~P~mP~~s~ki~~~-L~~~ 121 (162)
T d1pfva1 83 ADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAF-LNTE 121 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHH-HTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hCCC
Confidence 45667777788888888888889999999998877 5643
No 5
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.58 E-value=4.4e+02 Score=18.04 Aligned_cols=57 Identities=14% Similarity=0.069 Sum_probs=32.1
Q ss_pred hhhchHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHh
Q 018169 289 FEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGMFFIELKFSLPIYEFNFVV 346 (360)
Q Consensus 289 iee~~~~~Fs~~~~~~~~~~~~~~~~~l~~~L~~~~~lgl~~~~~G~~~s~~ll~~ll 346 (360)
+||-.|-.|+++.+.+..-+.+++...|...+++=..+| =...||...-++.++--|
T Consensus 2 L~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vg-E~~sFG~s~ie~sv~sCF 58 (97)
T d1eg3a2 2 LEDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLG-EVASFGGSNIEPSVRSCF 58 (97)
T ss_dssp HHHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTT-CGGGGTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhC-cccccCCCcchHHHHHHH
Confidence 567778889998665444344555555555555444333 112366654456655544
No 6
>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503 {Ralstonia eutropha [TaxId: 106590]}
Probab=2.99 E-value=2.1e+02 Score=19.47 Aligned_cols=12 Identities=50% Similarity=0.935 Sum_probs=9.7
Q ss_pred hHHHHHHHHHhc
Q 018169 64 SREGFRRACMRA 75 (360)
Q Consensus 64 sre~~r~a~lr~ 75 (360)
|+|.||.-|+|+
T Consensus 15 s~e~fr~ec~~h 26 (108)
T d2ifxa1 15 SDETFRAECLRH 26 (108)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 678888888875
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.78 E-value=2.3e+02 Score=19.04 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018169 91 LLKVAWLTLPLGIFITI 107 (360)
Q Consensus 91 ~~n~awl~i~~g~~~~~ 107 (360)
.+=..|+.+|.-+++.+
T Consensus 61 ~lEi~WtiIP~iil~~i 77 (91)
T d1fftb2 61 KVEAVVWTVPILIIIFL 77 (91)
T ss_dssp HHHHHTTHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHH
Confidence 56788998887554443
No 8
>d1wb1a3 b.44.1.1 (A:272-387) Elongation factor SelB, domain 3 {Methanococcus maripaludis [TaxId: 39152]}
Probab=2.66 E-value=2.4e+02 Score=19.85 Aligned_cols=17 Identities=24% Similarity=0.597 Sum_probs=12.7
Q ss_pred HhhhceeeeEecc-CCCc
Q 018169 251 LQEGEKLVLVWLD-TPYN 267 (360)
Q Consensus 251 ltegDk~vl~~~~-~~~~ 267 (360)
..+|||.++.++. |++.
T Consensus 79 ae~GDrilitrLDLPPTT 96 (116)
T d1wb1a3 79 AEVGDRVLITRLDLPPTT 96 (116)
T ss_dssp CCSSCCCBEECTTSCTTS
T ss_pred hhcCCeEEEEEccCCCcE
Confidence 4589999999987 4444
No 9
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId: 10891]}
Probab=2.60 E-value=1.9e+02 Score=28.13 Aligned_cols=33 Identities=12% Similarity=0.371 Sum_probs=26.5
Q ss_pred ceeeeEeccCCCcchhhhHhhhhhhHHHHHHHh
Q 018169 255 EKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFL 287 (360)
Q Consensus 255 Dk~vl~~~~~~~~qG~Y~la~nlgsl~aR~lf~ 287 (360)
|-++-+.+.++.|||.|++.++.--+++|-...
T Consensus 883 ~P~i~S~yMP~GD~gmfsil~~~R~l~t~~~~~ 915 (1264)
T d1muka_ 883 DPWIFSWYMPTGDLGMYSWISLIRPLMTRWMVA 915 (1264)
T ss_dssp CTTCBCTTCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeecccCCCchhHHHHHHHHHHHHHhhhcc
Confidence 445566677899999999999999888876544
No 10
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.30 E-value=5.4e+02 Score=13.50 Aligned_cols=11 Identities=9% Similarity=0.628 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH
Q 018169 91 LLKVAWLTLPL 101 (360)
Q Consensus 91 ~~n~awl~i~~ 101 (360)
.+|.+|-.+..
T Consensus 5 iv~~awaa~~a 15 (31)
T d1q90n_ 5 IVQIGWAATCV 15 (31)
T ss_dssp HHHHHHHHHHH
T ss_pred EEEhHHHHHHH
Confidence 78999975433
Done!