BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018171
(360 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GUM4|Y3739_ARATH Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana
GN=At3g27390 PE=1 SV=2
Length = 588
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/363 (67%), Positives = 302/363 (83%), Gaps = 9/363 (2%)
Query: 1 MEPPKGFLASLWSFICFLPYFIGLLLLGIIKGIIFCPVICLMMTIGNSAIILGLLPAHVL 60
MEPP GF ASL+ F+ FLPYFIGLL LG IKGI+ CP++CL++TIGNSA+IL LLP H++
Sbjct: 1 MEPPIGFRASLFQFLLFLPYFIGLLFLGFIKGIVLCPLVCLVVTIGNSAVILSLLPVHIV 60
Query: 61 WTYYCILRAKQLGPVLKLLTCICIPVFLILWPVVSIGASIIGGALYGFLSPIFATFDAVG 120
WT+Y I+ AKQ+GP+LK+ C+C+P +ILWP+V I S++GGALYGF SPIFATFDAVG
Sbjct: 61 WTFYSIVSAKQVGPILKIFLCLCLPAAIILWPIVGILGSVLGGALYGFFSPIFATFDAVG 120
Query: 121 EGKTNDIFHCFYDGTWSTIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRLL 180
EGK FHCFYDGTWST++ SFT+VRDFKDVCFHSYFSLMD+L+Q PD KYYEIRLL
Sbjct: 121 EGKPYQFFHCFYDGTWSTMQRSFTVVRDFKDVCFHSYFSLMDELKQ-SCPDRKYYEIRLL 179
Query: 181 YIPGAIIAGGLGVLIDVPVISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAG 240
+PGA++ LG+L+D PVIS+VA+CKSPYMLFKGWHRLFHDLIGREGPFLET+CVP+AG
Sbjct: 180 QLPGALVVSVLGILVDPPVISLVAICKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAG 239
Query: 241 LAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYDEYSNDIL 300
LAI+LWPLAV GAV+GS+++SIFLGAYAGVV YQESS ++GL YI+A++SIYDEYS DIL
Sbjct: 240 LAILLWPLAVTGAVIGSVISSIFLGAYAGVVSYQESSFYYGLCYIVASVSIYDEYSTDIL 299
Query: 301 DMPEGSCFPRPQYRKKADLSRTSTFSRP----SSFKDPPS-RTSSLRKP-IDLKPLEVSC 354
D+PEGSCFPRP+YR+K + + FS P S K+ S R S+R P ID+KPL++
Sbjct: 300 DLPEGSCFPRPKYRRKDE--EPTPFSGPVPRLGSVKNASSMRGGSVRVPMIDIKPLDLLN 357
Query: 355 AIF 357
+F
Sbjct: 358 ELF 360
>sp|Q8R4K8|PAPP1_MOUSE Pappalysin-1 OS=Mus musculus GN=Pappa PE=2 SV=2
Length = 1624
Score = 33.5 bits (75), Expect = 2.5, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 121 EGKTNDIFHCFYDGTWSTIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDG 172
+G+ ++I HC DGTWS SF + R+ + C S + ++ + Q PDG
Sbjct: 1446 QGRGSNIIHCRKDGTWSG---SFHVCREMQGQC--SAPNQLNSNLKLQCPDG 1492
>sp|Q60651|KLRA4_MOUSE Killer cell lectin-like receptor 4 OS=Mus musculus GN=Klra4 PE=2
SV=2
Length = 263
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 149 FKDVCFHSYFSLMDDLRQKQAPDGKYYEIRLLYIPGAIIAGGLGVLIDVPVISVVALCKS 208
F V FH L +++R K+ + +R+ +P +I LG+LI + +++V L +
Sbjct: 8 FSAVRFHKSSGLQNEMRLKETRKPEKARLRVCSVPWQLIVIALGILISLRLVTVAVLMTN 67
Query: 209 PYMLFKGWHRL 219
+ + H L
Sbjct: 68 IFQYGQQKHEL 78
>sp|Q3J1Q3|NUOH2_RHOS4 NADH-quinone oxidoreductase subunit H 2 OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=nuoH2 PE=3 SV=1
Length = 318
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 217 HRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVL--GSMVTSIFLGAYAGVVVYQ 274
HRL DL E + +G++ L+ L A+L ++ T++FLG +AG ++
Sbjct: 201 HRLPFDLQESEQDLVAGFMTEYSGMSFALFFLGEYLAILLVAALFTTLFLGGWAGPIL-- 258
Query: 275 ESSLWFGLRYIIAALSIYDEYSNDILDMPEGSCFPRPQYRK 315
+WFGL+ +AA+S+ + + PRP+Y +
Sbjct: 259 PGPIWFGLK--VAAISVVFVWLR--------AALPRPRYDQ 289
>sp|A3PKI6|NUOH2_RHOS1 NADH-quinone oxidoreductase subunit H 2 OS=Rhodobacter sphaeroides
(strain ATCC 17029 / ATH 2.4.9) GN=nuoH2 PE=3 SV=1
Length = 318
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 217 HRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVL--GSMVTSIFLGAYAGVVVYQ 274
HRL DL E + +G++ L+ L A+L ++ T++FLG +AG ++
Sbjct: 201 HRLPFDLQESEQDLVAGFMTEYSGMSFALFFLGEYLAILLVAALFTTLFLGGWAGPIL-- 258
Query: 275 ESSLWFGLRYIIAALSIYDEYSNDILDMPEGSCFPRPQYRK 315
+WFGL+ +AA+S+ + + PRP+Y +
Sbjct: 259 PGPVWFGLK--VAAISVVFVWLR--------AALPRPRYDQ 289
>sp|C6DCX9|Y3288_PECCP UPF0255 protein PC1_3288 OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=PC1_3288 PE=3 SV=1
Length = 416
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 175 YEIRLLYIPGAIIAGG--LGVLIDVPVIS-----VVALCKSPYMLFKGWHRLFHDLIGRE 227
YE++ L P IAGG L + +P + V +C S ML +HRLF D
Sbjct: 167 YELKELTFP---IAGGGTLTGFLHMPSQAKAPFPTVLMCGSLEMLQSDYHRLFQDYFAPA 223
Query: 228 GPFLETICVPLAGLA 242
G + TI VP G +
Sbjct: 224 GMAMLTIDVPSVGFS 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.147 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,446,942
Number of Sequences: 539616
Number of extensions: 6190825
Number of successful extensions: 17468
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 17456
Number of HSP's gapped (non-prelim): 31
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.5 bits)