BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018173
         (360 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
          Length = 319

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 69/88 (78%)

Query: 267 SSSVTPNVVVAADGSGNFKTXXXXXXXXPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMF 326
           SS+V PNVVVAADGSG++KT        P+    RY+IRIKAGVYRENV+V KK KNIMF
Sbjct: 2   SSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMF 61

Query: 327 IGDGRTRTIITGSRNVVDGSTTFKSATV 354
           +GDGRT TIIT S+NV DGSTTF SATV
Sbjct: 62  LGDGRTSTIITASKNVQDGSTTFNSATV 89


>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
           Methylesterase And Its Inhibitor Protein
          Length = 317

 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 54/85 (63%)

Query: 270 VTPNVVVAADGSGNFKTXXXXXXXXPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGD 329
           +  N VVA DG+G+++T        P     RY+I +K G Y+ENVEV     N+M +GD
Sbjct: 1   IIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGD 60

Query: 330 GRTRTIITGSRNVVDGSTTFKSATV 354
           G   T ITGS NVVDGSTTF+SAT+
Sbjct: 61  GMYATTITGSLNVVDGSTTFRSATL 85


>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
          Length = 364

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 273 NVVVAADGSGN-FKTXXXXXXXXPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGR 331
           N VV+    G+ F +        P+  T  +II +K GVY E +EV + H  +   G+ R
Sbjct: 32  NAVVSTTPQGDEFSSINAALKSAPKDDTP-FIIFLKNGVYTERLEVARSH--VTLKGENR 88

Query: 332 TRTII 336
             T+I
Sbjct: 89  DGTVI 93


>pdb|3P8C|B Chain B, Structure And Control Of The Actin Regulatory Wave Complex
          Length = 1128

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 135 KVALHD--CLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDG 192
           K+AL    CL    + +  +HKA EDL  + N +  ++  +D++    AA+++ G+    
Sbjct: 284 KLALQSSSCLSLFRDEVFHIHKAAEDL--FVNIRGYNKRINDIRECKEAAVSHAGS---- 337

Query: 193 FSHDDANKHVRDALSD 208
             H +  K +R AL +
Sbjct: 338 -MHRERRKFLRSALKE 352


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,925,125
Number of Sequences: 62578
Number of extensions: 310566
Number of successful extensions: 616
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 8
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)