Query 018174
Match_columns 360
No_of_seqs 136 out of 402
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 06:46:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1379 Serine/threonine prote 100.0 6E-32 1.3E-36 261.7 9.2 107 253-359 70-186 (330)
2 cd00143 PP2Cc Serine/threonine 98.0 5.2E-06 1.1E-10 73.1 4.7 84 271-358 12-115 (254)
3 PF13672 PP2C_2: Protein phosp 97.6 0.00027 5.8E-09 62.2 7.7 85 270-358 8-113 (212)
4 smart00332 PP2Cc Serine/threon 97.6 0.00044 9.6E-09 61.5 8.9 88 266-358 12-118 (255)
5 COG0631 PTC1 Serine/threonine 97.5 0.00027 5.9E-09 66.7 7.4 53 261-313 10-68 (262)
6 PLN03145 Protein phosphatase 2 97.0 0.0025 5.3E-08 63.7 7.7 80 271-358 76-182 (365)
7 smart00331 PP2C_SIG Sigma fact 96.9 0.0043 9.2E-08 53.9 7.8 79 272-358 15-103 (193)
8 PF00481 PP2C: Protein phospha 95.9 0.012 2.6E-07 54.2 5.1 80 273-358 13-115 (254)
9 PTZ00224 protein phosphatase 2 95.5 0.082 1.8E-06 53.4 9.4 76 273-358 35-121 (381)
10 PF07228 SpoIIE: Stage II spor 94.8 0.11 2.5E-06 44.7 7.2 63 285-355 6-73 (193)
11 PRK14559 putative protein seri 94.5 0.2 4.3E-06 54.1 9.5 92 262-358 378-500 (645)
12 KOG0698 Serine/threonine prote 93.5 0.32 6.8E-06 47.7 8.0 67 284-358 76-157 (330)
13 TIGR02865 spore_II_E stage II 86.8 2.5 5.4E-05 46.4 8.3 93 252-354 547-647 (764)
14 KOG0700 Protein phosphatase 2C 81.0 4.8 0.0001 41.7 7.0 35 325-359 167-218 (390)
15 PF07177 Neuralized: Neuralize 32.8 1E+02 0.0022 24.3 4.7 59 131-192 9-68 (69)
16 KOG0697 Protein phosphatase 1B 28.9 2.1E+02 0.0046 29.5 7.3 32 328-359 109-142 (379)
17 PF05674 DUF816: Baculovirus p 26.5 1E+02 0.0022 29.0 4.3 38 300-337 2-40 (171)
18 KOG4558 Uncharacterized conser 24.9 36 0.00078 33.2 1.1 69 39-107 18-102 (251)
No 1
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=6e-32 Score=261.73 Aligned_cols=107 Identities=45% Similarity=0.678 Sum_probs=98.1
Q ss_pred cceEEEeeeeecCCCCCCCCCCCceEEe-e--cCceeEeeccccccccCCCChhHHHHHHHHHHHHHHHhCCCCCCCHHH
Q 018174 253 KTLKLLSGACCLPHPDKEETGGEDAHFI-S--DKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDPAR 329 (360)
Q Consensus 253 ~~L~L~sGs~~iPhPdK~~~gGEDA~FI-~--~~~aiGVADGVGGWae~GVDPglFSReLM~nc~~~~~ee~~g~~dP~~ 329 (360)
..+..+.+.+..||++|+.++||||||| . +..++|||||||||+++|||||+|||+||++|+++++++.+...+|..
T Consensus 70 t~~~~~~~~~~~~~~~~~~~~GEDa~Fvss~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~ 149 (330)
T KOG1379|consen 70 TSLCGFSKDFIRPHPSKVGKGGEDAWFVSSNPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVN 149 (330)
T ss_pred hhhccccccccCCccccCCCCCCcceeeccCcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHH
Confidence 5577788899999999999999999999 4 578999999999999999999999999999999999999888999999
Q ss_pred HHHHHHhccc-----CCCcceEEEEEEe--cCceeec
Q 018174 330 VLEKAHSSTR-----AKGSSTACIIALT--DQVCWLN 359 (360)
Q Consensus 330 LLekAY~~T~-----~~GSSTACIa~Ld--~~~L~~~ 359 (360)
||++||.+++ +.|||||||+.|+ +.+||..
T Consensus 150 lL~~ay~~l~~~~~~~vGSSTAcI~~l~~~~~~Lh~a 186 (330)
T KOG1379|consen 150 LLEKAYAELKSQKVPIVGSSTACILALDRENGKLHTA 186 (330)
T ss_pred HHHHHHHHHhhcCCCCCCcceeeeeeeecCCCeEEEe
Confidence 9999998765 4599999999999 6788864
No 2
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=98.04 E-value=5.2e-06 Score=73.12 Aligned_cols=84 Identities=27% Similarity=0.366 Sum_probs=51.1
Q ss_pred CCCCCceEEe-e-----cCceeEeeccccccccCCCChhHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHhcc-----
Q 018174 271 ETGGEDAHFI-S-----DKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPD-GSIDPARVLEKAHSST----- 338 (360)
Q Consensus 271 ~~gGEDA~FI-~-----~~~aiGVADGVGGWae~GVDPglFSReLM~nc~~~~~ee~~-g~~dP~~LLekAY~~T----- 338 (360)
....||++++ . +..+++||||+|||....+.+..+.+.|. +.+..... ...++.+.|++++++.
T Consensus 12 r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 87 (254)
T cd00143 12 RKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELL----EELEETLTLSEEDIEEALRKAFLRADEEIL 87 (254)
T ss_pred CCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHH----HHHhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 3468999999 3 23689999999999544333333333333 33322111 1234445666665421
Q ss_pred --------cCCCcceEEEEEEecCceee
Q 018174 339 --------RAKGSSTACIIALTDQVCWL 358 (360)
Q Consensus 339 --------~~~GSSTACIa~Ld~~~L~~ 358 (360)
...++||++++.+.++.+++
T Consensus 88 ~~~~~~~~~~~~gtT~~~~~~~~~~l~~ 115 (254)
T cd00143 88 EEAQDEPDDARSGTTAVVALIRGNKLYV 115 (254)
T ss_pred HhhhhccCCCCCCCcEEEEEEECCEEEE
Confidence 14688899999999887765
No 3
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=97.57 E-value=0.00027 Score=62.21 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=49.2
Q ss_pred CCCCCCceEEe---ecCceeEeeccccccccCCCChhHHHHHHHHHHHHHHHhCCCCCCCH------HHHHHHHHh----
Q 018174 270 EETGGEDAHFI---SDKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDP------ARVLEKAHS---- 336 (360)
Q Consensus 270 ~~~gGEDA~FI---~~~~aiGVADGVGGWae~GVDPglFSReLM~nc~~~~~ee~~g~~dP------~~LLekAY~---- 336 (360)
.....||+|++ .+..++.|||||||+... ..-|+.+++.+.+.+.........+ ..++++.+.
T Consensus 8 ~~~~nqD~~~~~~~~~~~~~aVaDG~g~~~~~----~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (212)
T PF13672_consen 8 RGAPNQDAFGIRTDDDGNLAAVADGVGGSPYG----EEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIVRA 83 (212)
T ss_dssp TSSS--EEEEEE-TCCTCEEEEEEEESTTTHH----HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCCCCCEEeeeCCCCEEEEEEECCCCCchh----HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhhh
Confidence 34567999987 345678999999998633 3446666666666665443321111 223333331
Q ss_pred --------cccCCCcceEEEEEEecCceee
Q 018174 337 --------STRAKGSSTACIIALTDQVCWL 358 (360)
Q Consensus 337 --------~T~~~GSSTACIa~Ld~~~L~~ 358 (360)
......+||++++.++++++++
T Consensus 84 ~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~ 113 (212)
T PF13672_consen 84 FQSAKQADLELRDYGTTLLALVIDPDKVYI 113 (212)
T ss_dssp --HHHHHSGGGTT-EE-EEEEEEETTEEEE
T ss_pred hhhhhhccccccccCceEEEEEEECCEEEE
Confidence 1235678999999999987765
No 4
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=97.55 E-value=0.00044 Score=61.55 Aligned_cols=88 Identities=27% Similarity=0.290 Sum_probs=56.5
Q ss_pred CCCCCCCCCCceEEe-ec----CceeEeeccccccccCCCChhHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHhccc
Q 018174 266 HPDKEETGGEDAHFI-SD----KQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEP-DGSIDPARVLEKAHSSTR 339 (360)
Q Consensus 266 hPdK~~~gGEDA~FI-~~----~~aiGVADGVGGWae~GVDPglFSReLM~nc~~~~~ee~-~g~~dP~~LLekAY~~T~ 339 (360)
+.......+||+|++ .. ..+++||||+| |-..+.|+.+.|........... ....++.++|++++....
T Consensus 12 ~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~g-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (255)
T smart00332 12 SMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHG-----GSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFLKTD 86 (255)
T ss_pred cCCCCCCCCcceEEEeccCCCCeEEEEEEeCCC-----cHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHHH
Confidence 334456788999999 32 24899999998 55556666666654332221111 111357778888876431
Q ss_pred -------------CCCcceEEEEEEecCceee
Q 018174 340 -------------AKGSSTACIIALTDQVCWL 358 (360)
Q Consensus 340 -------------~~GSSTACIa~Ld~~~L~~ 358 (360)
..++||++++.+.++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~ 118 (255)
T smart00332 87 EEILEELESLEEDAGSGSTAVVALISGNKLYV 118 (255)
T ss_pred HHHHHhhhhccCCCCCCccEEEEEEECCEEEE
Confidence 2568999999999988765
No 5
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=97.51 E-value=0.00027 Score=66.74 Aligned_cols=53 Identities=28% Similarity=0.337 Sum_probs=39.1
Q ss_pred eeecCCCCCCCCCCCceEEe-ecCc-----eeEeeccccccccCCCChhHHHHHHHHHH
Q 018174 261 ACCLPHPDKEETGGEDAHFI-SDKQ-----AIGVADGVGGWANHGVNAGLYSRELMSNS 313 (360)
Q Consensus 261 s~~iPhPdK~~~gGEDA~FI-~~~~-----aiGVADGVGGWae~GVDPglFSReLM~nc 313 (360)
..+++++-...+..||+|++ .... .++||||+|||+...+.+....+.|.+..
T Consensus 10 ~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~ 68 (262)
T COG0631 10 VAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLF 68 (262)
T ss_pred eeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHH
Confidence 45567777777788999999 3222 89999999999987777766666655543
No 6
>PLN03145 Protein phosphatase 2c; Provisional
Probab=96.95 E-value=0.0025 Score=63.73 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=52.0
Q ss_pred CCCCCceEEe-ec--------------CceeEeeccccccccCCCChhHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 018174 271 ETGGEDAHFI-SD--------------KQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDPARVLEKAH 335 (360)
Q Consensus 271 ~~gGEDA~FI-~~--------------~~aiGVADGVGGWae~GVDPglFSReLM~nc~~~~~ee~~g~~dP~~LLekAY 335 (360)
.+.-||+|++ .+ ..++||+||.|| ...++|+...+... +.+......+..+.|.+||
T Consensus 76 R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG-----~~age~as~~l~~~---i~~~~~~~~~~~~al~~af 147 (365)
T PLN03145 76 RSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGG-----KHAADFACYHLPRF---IVEDEDFPREIEKVVSSAF 147 (365)
T ss_pred CCCCCCceEecccccccccccccCCCCceEEEEEeCCCC-----HHHHHHHHHHHHHH---HHhhhccchhHHHHHHHHH
Confidence 3456999987 21 247999999996 45688876654432 2222222234566777777
Q ss_pred hcc------------cCCCcceEEEEEEecCceee
Q 018174 336 SST------------RAKGSSTACIIALTDQVCWL 358 (360)
Q Consensus 336 ~~T------------~~~GSSTACIa~Ld~~~L~~ 358 (360)
.++ ....+||++++.+.++.|++
T Consensus 148 ~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~v 182 (365)
T PLN03145 148 LQTDTAFAEACSLDASLASGTTALAALVVGRSLVV 182 (365)
T ss_pred HHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEE
Confidence 543 12478999999999888765
No 7
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=96.89 E-value=0.0043 Score=53.89 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=55.8
Q ss_pred CCCCceEEe-e--c-CceeEeeccccccccCCCChhHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhcc----cCCCc
Q 018174 272 TGGEDAHFI-S--D-KQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDPARVLEKAHSST----RAKGS 343 (360)
Q Consensus 272 ~gGEDA~FI-~--~-~~aiGVADGVGGWae~GVDPglFSReLM~nc~~~~~ee~~g~~dP~~LLekAY~~T----~~~GS 343 (360)
.-|.|.|.+ . + ..+++||||+|+ |+.++.++..++....+.+... .+|.++|++..+.. .....
T Consensus 15 ~~~GD~~~~~~~~~~~~~~~v~Dg~G~----G~~aa~~s~~~~~~~~~~~~~~----~~~~~~l~~~n~~l~~~~~~~~~ 86 (193)
T smart00331 15 QVGGDFYDVVKLPEGRLLIAIADVMGK----GLAAALAMSMARSALRTLLSEG----ISLSQILERLNRAIYENGEDGMF 86 (193)
T ss_pred hcCccEEEEEEeCCCeEEEEEEecCCC----ChHHHHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHhcCCCCcE
Confidence 467788766 2 2 357999999998 8889999999888777666532 46877777666542 23467
Q ss_pred ceEEEEEEe--cCceee
Q 018174 344 STACIIALT--DQVCWL 358 (360)
Q Consensus 344 STACIa~Ld--~~~L~~ 358 (360)
+|++++.++ +..+++
T Consensus 87 ~T~~~~~id~~~~~l~~ 103 (193)
T smart00331 87 ATLFLALYDFAGGTLSY 103 (193)
T ss_pred EEEEEEEEECCCCEEEE
Confidence 888888874 445554
No 8
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=95.94 E-value=0.012 Score=54.19 Aligned_cols=80 Identities=25% Similarity=0.318 Sum_probs=53.1
Q ss_pred CCCceEEe-e---------cCceeEeeccccccccCCCChhHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhc-----
Q 018174 273 GGEDAHFI-S---------DKQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDPARVLEKAHSS----- 337 (360)
Q Consensus 273 gGEDA~FI-~---------~~~aiGVADGVGGWae~GVDPglFSReLM~nc~~~~~ee~~g~~dP~~LLekAY~~----- 337 (360)
.-||.+++ . ....+||+||.||. ..+.|....+............ ..++.+.|.++|.+
T Consensus 13 ~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~-----~~a~~~~~~l~~~l~~~~~~~~-~~~~~~al~~a~~~~~~~~ 86 (254)
T PF00481_consen 13 EMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGS-----EAAEYASQNLPEFLKENLSFND-GNDIEEALRQAFLAFTDES 86 (254)
T ss_dssp SHHEEEEEEEEETCCTTEEEEEEEEEEEEESSS-----HHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred cccCEEEEecCccccCCCCCcEEEEEecCCCCh-----hhHHHHHHHHHHHHHhhccccc-ccchhhcccceeeeccccc
Confidence 34888887 3 12579999999955 5577877777643222211111 01566777777766
Q ss_pred --------ccCCCcceEEEEEEecCceee
Q 018174 338 --------TRAKGSSTACIIALTDQVCWL 358 (360)
Q Consensus 338 --------T~~~GSSTACIa~Ld~~~L~~ 358 (360)
.....+|||+++.+.++.|++
T Consensus 87 ~~~~~~~~~~~~~GsTa~v~li~~~~l~v 115 (254)
T PF00481_consen 87 LYSDSENNESSKSGSTATVALIDGNKLYV 115 (254)
T ss_dssp HHHHHHHHTHTTSEEEEEEEEEETTEEEE
T ss_pred ccccccccccccccccccccccccceeEE
Confidence 235899999999999998876
No 9
>PTZ00224 protein phosphatase 2C; Provisional
Probab=95.46 E-value=0.082 Score=53.43 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=42.3
Q ss_pred CCCceEEe-ec--CceeEeeccccccccCCCChhHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhc-------ccCCC
Q 018174 273 GGEDAHFI-SD--KQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDPARVLEKAHSS-------TRAKG 342 (360)
Q Consensus 273 gGEDA~FI-~~--~~aiGVADGVGGWae~GVDPglFSReLM~nc~~~~~ee~~g~~dP~~LLekAY~~-------T~~~G 342 (360)
.-||+|++ .. ..++||+||-||.. .+.| +.++..+.+.+.+.. ..+ +.|++++.. ....|
T Consensus 35 ~nED~~~v~~~~~~~lfgVfDGHgG~~-----~S~~---~~~~l~~~l~~~~~~-~~~-~~l~~a~~~~d~~i~~~~~~~ 104 (381)
T PTZ00224 35 SMEDAHLLYLTDDWGFFGVFDGHVNDE-----CSQY---LARAWPQALEKEPEP-MTD-ERMEELCLEIDEEWMDSGREG 104 (381)
T ss_pred CCCCeeEeccCCCceEEEEEeCCCcHH-----HHHH---HHHHHHHHHHhcccc-ccH-HHHHHHHHHHHHHHHhcccCC
Confidence 35999987 22 35899999976542 2444 444444444332211 122 335555533 22357
Q ss_pred cceEEEEEEec-Cceee
Q 018174 343 SSTACIIALTD-QVCWL 358 (360)
Q Consensus 343 SSTACIa~Ld~-~~L~~ 358 (360)
+||++++.+.. ..+++
T Consensus 105 GsTatv~lI~~~~~l~v 121 (381)
T PTZ00224 105 GSTGTFCVIMKDVHLQV 121 (381)
T ss_pred CCeEEEEEEEECCEEEE
Confidence 78998887764 45543
No 10
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=94.81 E-value=0.11 Score=44.66 Aligned_cols=63 Identities=32% Similarity=0.439 Sum_probs=50.8
Q ss_pred eeEeeccccccccCCCChhHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhcc----cCC-CcceEEEEEEecCc
Q 018174 285 AIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDPARVLEKAHSST----RAK-GSSTACIIALTDQV 355 (360)
Q Consensus 285 aiGVADGVGGWae~GVDPglFSReLM~nc~~~~~ee~~g~~dP~~LLekAY~~T----~~~-GSSTACIa~Ld~~~ 355 (360)
.+.|+|+.| +|+.++.++..+.......+.+. .+|.++|+...+.. ... ...|+|++.++.++
T Consensus 6 ~~~v~D~~G----hG~~aa~~~~~~~~~~~~~~~~~----~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~~~ 73 (193)
T PF07228_consen 6 FIIVGDVSG----HGVSAALLSAALASAIRELLDEG----LDPEELLEALNRRLYRDLKGDNRYATACYAIIDPET 73 (193)
T ss_dssp EEEEEEESS----SSHHHHHHHHHHHHHHHHHHHTT----TSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEETTT
T ss_pred EEEEEEecC----CCHHHHHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhhhccccceEEEEEecccc
Confidence 578999999 99999999999998887777542 46999998888754 344 67899999988664
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=94.46 E-value=0.2 Score=54.15 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=52.1
Q ss_pred eecCCCCCCCCCCCceEEe-ec--------------CceeEeeccccccccCCCChhHHHHHH-HHHHHHHHHhCCCCCC
Q 018174 262 CCLPHPDKEETGGEDAHFI-SD--------------KQAIGVADGVGGWANHGVNAGLYSREL-MSNSVAAIQEEPDGSI 325 (360)
Q Consensus 262 ~~iPhPdK~~~gGEDA~FI-~~--------------~~aiGVADGVGGWae~GVDPglFSReL-M~nc~~~~~ee~~g~~ 325 (360)
++.-+.-+..+.-||+|++ .. ..+++||||+||=.. |+.+..+ ++...+.+.+......
T Consensus 378 a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~-----GevAS~lAv~~L~~~~~~~~~~~~ 452 (645)
T PRK14559 378 AGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAA-----GEVASALAVETLQQYFQQHWQDEL 452 (645)
T ss_pred EEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchh-----HHHHHHHHHHHHHHHHHhhhcccc
Confidence 3444444555677999876 21 247999999998543 4443333 3333333332222223
Q ss_pred CHHHHHHHHHhcc---------------cCCCcceEEEEEEecCceee
Q 018174 326 DPARVLEKAHSST---------------RAKGSSTACIIALTDQVCWL 358 (360)
Q Consensus 326 dP~~LLekAY~~T---------------~~~GSSTACIa~Ld~~~L~~ 358 (360)
.+.+.|++|+... ....+||++++.+.++.+++
T Consensus 453 ~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~i 500 (645)
T PRK14559 453 PDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAV 500 (645)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEE
Confidence 3455566665321 01358898889898887765
No 12
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=93.45 E-value=0.32 Score=47.71 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=46.0
Q ss_pred ceeEeeccccccccCCCChhHHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHh-cc----------cCCCcceEEEE
Q 018174 284 QAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGS---IDPARVLEKAHS-ST----------RAKGSSTACII 349 (360)
Q Consensus 284 ~aiGVADGVGGWae~GVDPglFSReLM~nc~~~~~ee~~g~---~dP~~LLekAY~-~T----------~~~GSSTACIa 349 (360)
.++||.||=| |...++|.++-+... +.++.... .+..+.+.++|. ++ ...++|||+++
T Consensus 76 ~ffgVfDGHG-----G~~~A~~~~~~L~~~---l~~~~~~~~~~~~~~~a~~~~F~~~~D~~~~~~~~~~~~~gstav~~ 147 (330)
T KOG0698|consen 76 AFFGVFDGHG-----GDLAAKFAAKHLHKN---LLEQLAFPKDRQDVKDALRRAFLTKTDSEFLEKREDNRSGGSTAVVA 147 (330)
T ss_pred EEEEEEeCCC-----CHHHHHHHHHHHHHH---HHhhhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCcceeeee
Confidence 4799999998 889999999544432 22222222 246788888888 33 25788888888
Q ss_pred EEecC-ceee
Q 018174 350 ALTDQ-VCWL 358 (360)
Q Consensus 350 ~Ld~~-~L~~ 358 (360)
.+.++ .|++
T Consensus 148 vi~~~~~l~v 157 (330)
T KOG0698|consen 148 LIKKGRKLYV 157 (330)
T ss_pred eEecCCEEEE
Confidence 88865 6654
No 13
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=86.75 E-value=2.5 Score=46.45 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=62.1
Q ss_pred CcceEEEeeeeecCCCCCCCCCCCceEEe-e--c-CceeEeeccccccccCCCChhHHHHHHHHHHHHHHHhCCCCCCCH
Q 018174 252 GKTLKLLSGACCLPHPDKEETGGEDAHFI-S--D-KQAIGVADGVGGWANHGVNAGLYSRELMSNSVAAIQEEPDGSIDP 327 (360)
Q Consensus 252 ~~~L~L~sGs~~iPhPdK~~~gGEDA~FI-~--~-~~aiGVADGVGGWae~GVDPglFSReLM~nc~~~~~ee~~g~~dP 327 (360)
.+++++..|....++|.. .-|.|.|-+ . + ...+.|+||.| +|+.++..|...++...+.++. ..+|
T Consensus 547 ~~~~~~~~g~a~~~k~g~--~vsGD~y~~~~l~~g~~~~~laDGmG----hG~~Aa~~S~~~~~ll~~~~~~----g~~~ 616 (764)
T TIGR02865 547 TPKYHVSTGVARAAKDGE--LVSGDSYSFGKLSAGKYAVAISDGMG----SGPEAAQESSACVRLLEKFLES----GFDR 616 (764)
T ss_pred CCceeehhhHHHhcCCCC--cccCceEEEEEECCCEEEEEEEcccC----CCHHHHHHHHHHHHHHHHHHHc----CCCH
Confidence 355888888888888763 357788755 2 2 35689999999 8888898888777666555543 3567
Q ss_pred HHHHHHHHhcc--cCC--CcceEEEEEEecC
Q 018174 328 ARVLEKAHSST--RAK--GSSTACIIALTDQ 354 (360)
Q Consensus 328 ~~LLekAY~~T--~~~--GSSTACIa~Ld~~ 354 (360)
.++++..-+.. +.. --+|+.++.+|..
T Consensus 617 ~~ai~~lN~~L~~~~~~~~faTl~l~~IDl~ 647 (764)
T TIGR02865 617 EVAIKTVNSILSLRSTDEKFSTLDLSVIDLY 647 (764)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEEEEECC
Confidence 77666544321 111 1378778888754
No 14
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=80.99 E-value=4.8 Score=41.70 Aligned_cols=35 Identities=20% Similarity=0.100 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHhccc-----------------CCCcceEEEEEEecCceeec
Q 018174 325 IDPARVLEKAHSSTR-----------------AKGSSTACIIALTDQVCWLN 359 (360)
Q Consensus 325 ~dP~~LLekAY~~T~-----------------~~GSSTACIa~Ld~~~L~~~ 359 (360)
.+-.+.|.+||++|. +.=+|+|||+.+.+..|++-
T Consensus 167 ~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVa 218 (390)
T KOG0700|consen 167 GDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVA 218 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEE
Confidence 344678888887641 34566779999999999873
No 15
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=32.79 E-value=1e+02 Score=24.32 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=34.5
Q ss_pred cccceEEeccccccCCccCCCCCCceeeeeeecccccceeeeee-eccCCCCCcceEEEeeec
Q 018174 131 SASKAVSVDYLTSRSGQCSLSTNNAAVSYVIRSVEGCRRATMSL-KSSKQSNNHLFHGYFICN 192 (360)
Q Consensus 131 ~~s~~v~~d~~~~~~~~~~~st~~~~v~f~~r~~~~c~k~s~~L-r~~~~~~~~~~~~~~~~~ 192 (360)
+++++.+.+|=+...- ...-+-++.|.+|.++.--++.|.+ +....|.+.+-+|.-.+|
T Consensus 9 ~G~nV~L~~~~~~A~R---~~sf~~giVFS~rPl~~~E~~~v~I~~~~~~wsG~L~~GvT~~~ 68 (69)
T PF07177_consen 9 HGKNVRLSNDGTVARR---VSSFNNGIVFSSRPLRIGEKFEVRIDEVEPSWSGSLRIGVTSCD 68 (69)
T ss_dssp E-TTEEE-SSS-EEEE---ST-SSS-EEEESS-B-TT-EEEEEEEEE-SSSSS--EEEEESS-
T ss_pred cCCCEEEcCCCeEEEe---cccCCceEEEecCCccCCCEEEEEEEecCCCceeEEEEeeEccC
Confidence 5666666554333222 3334557999999999999999999 666788899999987765
No 16
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=28.92 E-value=2.1e+02 Score=29.49 Aligned_cols=32 Identities=9% Similarity=0.227 Sum_probs=20.4
Q ss_pred HHHHHHHHhccc--CCCcceEEEEEEecCceeec
Q 018174 328 ARVLEKAHSSTR--AKGSSTACIIALTDQVCWLN 359 (360)
Q Consensus 328 ~~LLekAY~~T~--~~GSSTACIa~Ld~~~L~~~ 359 (360)
.+++..-++.++ -.|+|||+-+.+.+..+.++
T Consensus 109 DE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~ 142 (379)
T KOG0697|consen 109 DEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYII 142 (379)
T ss_pred HHHHhhhhhhhcccccCCceEEEEEecCceEEEE
Confidence 455555555443 35888888777777766553
No 17
>PF05674 DUF816: Baculovirus protein of unknown function (DUF816); InterPro: IPR008534 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf106. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family includes proteins that are about 200 amino acids in length. The proteins are all from baculoviruses. This family includes ORF107 from Orgyia pseudotsugata multicapsid polyhedrosis virus (OpMNPV) and a variety of other numbered ORF proteins, such as ORF52 Q91F03 from SWISSPROT, ORF140 Q9YMI8 from SWISSPROT from other baculoviruses. The function of these proteins is unknown.
Probab=26.54 E-value=1e+02 Score=29.00 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=27.5
Q ss_pred CChhHHHHHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhc
Q 018174 300 VNAGLYSRELM-SNSVAAIQEEPDGSIDPARVLEKAHSS 337 (360)
Q Consensus 300 VDPglFSReLM-~nc~~~~~ee~~g~~dP~~LLekAY~~ 337 (360)
||.-+|+|+|. ++|..+++.+.--+-+-..++++|+++
T Consensus 2 i~vdeFarqLIadkcs~LIes~~mLp~nvl~iik~A~~e 40 (171)
T PF05674_consen 2 IDVDEFARQLIADKCSALIESENMLPDNVLAIIKTARDE 40 (171)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 68889999987 779999987643344445677777653
No 18
>KOG4558 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.90 E-value=36 Score=33.18 Aligned_cols=69 Identities=33% Similarity=0.434 Sum_probs=38.9
Q ss_pred cccccccc--ccccccchhhhhccCCeeeee-------cchhhhhh-----ccccceeeeeccCccccc-CCCCce-eee
Q 018174 39 GNYRFLHS--LRFSTLSDLHVLLRPGTIFAA-------RSDLLLAN-----QKRNLSVVGAISRPFSVP-SVSGPS-FQV 102 (360)
Q Consensus 39 ~~~~~~h~--~~~~~~~~~~~l~~pg~~~~~-------~s~~~l~n-----~rr~~s~v~a~~r~~~v~-s~~g~~-~~~ 102 (360)
-|+-.||| .|++++.+|..--+--|++.- +-|..++| .+-..|+.++.+-+-+-- .-+||. |.+
T Consensus 18 ~ns~~~hs~yfQlAT~~~l~~~PrnRTVvfRgF~~h~~R~~~v~~ntdlrssk~~~sf~~~~~a~~~~~~~~~~P~~fem 97 (251)
T KOG4558|consen 18 DNSGVIHSEYFQLATLPTLEIYPRNRTVVFRGFVWHKPRPDDVLANTDLRSSKDIASFKAAEIAEQQKNTFPSGPIPFEM 97 (251)
T ss_pred ccCCccccceEEEeecccccCCcccceEEEecceecCCCCcceeeeccchhhhhhhhhhchhhhccccccccCCCcccce
Confidence 68999999 999999997765554454321 12222222 222233333332211111 137898 999
Q ss_pred ehhhh
Q 018174 103 CGYHI 107 (360)
Q Consensus 103 cgy~~ 107 (360)
|||--
T Consensus 98 C~yfp 102 (251)
T KOG4558|consen 98 CGYFP 102 (251)
T ss_pred eeeec
Confidence 99953
Done!