BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018175
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QLT|A Chain A, Crystal Structure Of An Isoform Of
Dl-Glycerol-3-Phosphatase, Rhr2p, From Saccharomyces
Cerevisiae
Length = 275
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 17/106 (16%)
Query: 78 MLLYMGTVSFDVV-PVIKHRPAPGSVYRSPQVYAKLKPEMDADNSSSDAISTIWKASHKG 136
+ L + FDV +I +PA + +R + K KP DA++ IS W+
Sbjct: 31 LSLKINAALFDVDGTIIISQPAIAAFWRD---FGKDKPYFDAEHVIH--ISHGWRTYDAI 85
Query: 137 VEWKP------CVKRSSGELPESNGYISVEANGGLNQQRISICNAV 176
++ P V + GE+PE G S+E G + +CNA+
Sbjct: 86 AKFAPDFADEEYVNKLEGEIPEKYGEHSIEVPGA-----VKLCNAL 126
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 239 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 298
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 299 VEELFKLLKEGHRMDKPSNCTNEL 322
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 190 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 249
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 250 VEELFKLLKEGHRMDKPSNCTNEL 273
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 187 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 246
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 247 VEELFKLLKEGHRMDKPSNCTNEL 270
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 198 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 257
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 258 VEELFKLLKEGHRMDKPSNCTNEL 281
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 198 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 257
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 258 VEELFKLLKEGHRMDKPSNCTNEL 281
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 198 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 257
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 258 VEELFKLLKEGHRMDKPSNCTNEL 281
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 183 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 242
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 243 VEELFKLLKEGHRMDKPSNCTNEL 266
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 204 RDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAW-------SPIQFYK 256
RDI+ DY+ + V PE + +R + S+V++F V W SP
Sbjct: 191 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 250
Query: 257 DEVLPKLLEE--RLIRISPFANRL 278
E L KLL+E R+ + S N L
Sbjct: 251 VEELFKLLKEGHRMDKPSNCTNEL 274
>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|3E37|A Chain A, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 379
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Query: 201 SKFRDIYDEDYFTSVLQNDVR 221
KFRD+YD YF +VLQ D R
Sbjct: 94 DKFRDVYD--YFRAVLQRDER 112
>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|A Chain A, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|A Chain A, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|A Chain A, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2H6G|A Chain A, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
pdb|2H6H|A Chain A, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
pdb|2H6I|A Chain A, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
pdb|2IEJ|A Chain A, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
Length = 382
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Query: 201 SKFRDIYDEDYFTSVLQNDVR 221
KFRD+YD YF +VLQ D R
Sbjct: 94 DKFRDVYD--YFRAVLQRDER 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,867,421
Number of Sequences: 62578
Number of extensions: 447675
Number of successful extensions: 973
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 24
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)