BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018175
         (360 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
           GN=At1g04910 PE=1 SV=1
          Length = 519

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 123/213 (57%), Gaps = 11/213 (5%)

Query: 126 ISTIWKASHKGVEWKPCVKRSSGELP---ESNGYISVEANGGLNQQRISICNAVAVAGYL 182
           +  +W+++  G  W+P     S   P   E+NGY+ V  NGGLNQQR +ICNAV  A  +
Sbjct: 59  VEELWESAKSG-GWRPSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIM 117

Query: 183 NATLVIPNFHYHSIWRDPSKFRDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVY 242
           NATLV+P    +S W D S F+ IYD ++F   L+ DV++V KIP+ + +         +
Sbjct: 118 NATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPD-VHKNGKTKKIKAF 176

Query: 243 NFRVKAWSPIQFYKDEVLPKLLEERLIRISPFANRLSFDAP-PAVQRLRCLANYEALRFS 301
             R    +PI++Y    L  + E   I ++PF++RL+ +   P  QRLRC  NY ALRF 
Sbjct: 177 QIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFK 236

Query: 302 SPILTMGETLVARMKERSVNHGGKYISVHLRFE 334
             I+ + E++V +++ +     G ++S+HLRFE
Sbjct: 237 PHIMKLSESIVDKLRSQ-----GHFMSIHLRFE 264


>sp|A3MX72|SYW_PYRCJ Tryptophan--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM
           11548 / VA1) GN=trpS PE=3 SV=1
          Length = 374

 Score = 35.0 bits (79), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 28  HGRGKPGGRFTPVGPPGRANLAHRLAWLFLSVLLRRQGIFLF 69
           HG GKP   +T  GP G  ++ H + W+ L  L  + G+ ++
Sbjct: 67  HGEGKPWALYTGRGPSGPVHIGHMVPWILLKWLSDKFGVEVY 108


>sp|A4WL99|SYW_PYRAR Tryptophan--tRNA ligase OS=Pyrobaculum arsenaticum (strain DSM
           13514 / JCM 11321) GN=trpS PE=3 SV=1
          Length = 374

 Score = 32.0 bits (71), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 28  HGRGKPGGRFTPVGPPGRANLAHRLAWLFLSVLLRRQGIFLF 69
           HG G+P   +T  GP G  ++ H + W+ L     + G+ ++
Sbjct: 67  HGEGRPWALYTGRGPSGPVHIGHMVPWILLKWFSDKFGVEVY 108


>sp|Q288N7|POLG_BECN1 Genome polyprotein OS=Bovine enteric calicivirus Newbury agent-1
           (isolate Bovine/UK/Newbury1/1976) GN=ORF1 PE=3 SV=1
          Length = 2210

 Score = 32.0 bits (71), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 194 HSIWRD--PSKFRDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVYNFRVKAWSP 251
           H I RD  P +     D  Y  SV   D+    K+PEY   RF H+ S  Y  ++  W  
Sbjct: 107 HQIHRDYAPDQLAQALDMAYILSVDPPDI----KLPEYEATRFTHDTS--YKGKLPRWLR 160

Query: 252 IQFYKDEVLPK 262
           +  +K   L K
Sbjct: 161 VYGFKSRELAK 171


>sp|Q8ZTU5|SYW_PYRAE Tryptophan--tRNA ligase OS=Pyrobaculum aerophilum (strain ATCC
           51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=trpS
           PE=3 SV=1
          Length = 375

 Score = 31.6 bits (70), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 28  HGRGKPGGRFTPVGPPGRANLAHRLAWLFLSVLLRRQGIFLF 69
           HG G+P   +T  GP G  ++ H + W+ L     + G+ ++
Sbjct: 67  HGEGRPWALYTGRGPSGPVHIGHMVPWILLKWFSDKFGLEVY 108


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,608,307
Number of Sequences: 539616
Number of extensions: 6276502
Number of successful extensions: 16532
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 16500
Number of HSP's gapped (non-prelim): 43
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)