Query 018175
Match_columns 360
No_of_seqs 178 out of 364
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:46:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 1.3E-30 2.8E-35 249.1 6.3 170 161-343 6-213 (351)
2 KOG3849 GDP-fucose protein O-f 97.5 0.00038 8.3E-09 68.6 7.9 58 152-211 27-90 (386)
3 PF03786 UxuA: D-mannonate deh 36.3 21 0.00045 36.7 1.7 65 249-314 181-265 (351)
4 PF01904 DUF72: Protein of unk 33.3 63 0.0014 30.4 4.4 85 252-342 127-224 (230)
5 COG1312 UxuA D-mannonate dehyd 29.3 1.3E+02 0.0028 31.2 6.0 90 248-338 186-301 (362)
6 PF12355 Dscam_C: Down syndrom 28.9 33 0.00071 30.2 1.5 15 9-23 58-72 (124)
7 PF10365 DUF2436: Domain of un 22.7 25 0.00054 32.2 -0.4 25 184-211 26-50 (161)
8 PF05766 NinG: Bacteriophage L 20.4 33 0.00071 32.4 -0.1 52 295-346 60-130 (189)
9 PF05830 NodZ: Nodulation prot 20.4 1.5E+02 0.0034 30.2 4.6 150 154-333 2-176 (321)
10 PF11768 DUF3312: Protein of u 19.6 86 0.0019 34.1 2.8 57 285-354 464-531 (545)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=99.96 E-value=1.3e-30 Score=249.10 Aligned_cols=170 Identities=35% Similarity=0.528 Sum_probs=120.4
Q ss_pred ecCChhHHHHHHHHHHHHHHHhcCcEeecccccccccCCCCC-----CCccCCHHHHHHhccCCceEeccCchhHHHhhc
Q 018175 161 ANGGLNQQRISICNAVAVAGYLNATLVIPNFHYHSIWRDPSK-----FRDIYDEDYFTSVLQNDVRVVNKIPEYIMERFD 235 (360)
Q Consensus 161 ~nGGLNQqR~~IcDAVaVAriLNATLVlP~l~~~S~WkD~S~-----F~DIFDvdhFI~sL~~dVrIVk~LP~~l~~~~~ 235 (360)
+.||+||||.++++||++|++||+|||||.+.....|+|.++ |+++||+++|++.++++|.+.+.+|........
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 789999999999999999999999999999999999999988 999999999999999999999999876644221
Q ss_pred ccC-------------------------Ccceeccccc-CCChhhHHhhchhhhhcc------ceEEEcCCCccccCC-C
Q 018175 236 HNM-------------------------SNVYNFRVKA-WSPIQFYKDEVLPKLLEE------RLIRISPFANRLSFD-A 282 (360)
Q Consensus 236 ~~~-------------------------~~i~~~~v~~-wss~~yY~e~VlP~L~k~------~VI~l~~f~~RLa~~-l 282 (360)
... .....+.... |+.+.+|.++++|.+.++ +++.|.++..++.++ .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 100 0112223333 888999999999999887 999999999999876 7
Q ss_pred CchhhhhhchhcccccccchhHHHHHHHHHHHHHhcccCCCCceEEEecccchhhHHHhHH
Q 018175 283 PPAVQRLRCLANYEALRFSSPILTMGETLVARMKERSVNHGGKYISVHLRFEEVSFHSAIN 343 (360)
Q Consensus 283 P~~iQrLRCrvnf~ALrF~~~I~~Lg~~LV~RmR~~s~~~~g~yIALHLRfE~DMla~a~~ 343 (360)
+.++|+ +|+|+++|+++|++++++|+. .+++|||+|||+|+|| ..+|.
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~----~~~~yiavHlR~~~D~-~~~C~ 213 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLA----GGGPYIAVHLRRGKDW-FSACE 213 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH--------SSEEEEEE--SHHH-HHHHC
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhc----ccCceEEEeecccCch-Hhhcc
Confidence 888888 999999999999999999992 3689999999999999 46665
No 2
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00038 Score=68.62 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=44.6
Q ss_pred CCCceEEEE-ecCChhHHHHHHHHHHHHHHHhcCcEeecccccccccCC-----CCCCCccCCHHH
Q 018175 152 ESNGYISVE-ANGGLNQQRISICNAVAVAGYLNATLVIPNFHYHSIWRD-----PSKFRDIYDEDY 211 (360)
Q Consensus 152 ~snGYL~V~-~nGGLNQqR~~IcDAVaVAriLNATLVlP~l~~~S~WkD-----~S~F~DIFDvdh 211 (360)
..||||+.- |-|-+.+|-....-..|.|+.||.|||+|..-. |-+- --.|+..|.++-
T Consensus 27 DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiE--y~~pe~~n~~vpf~~yF~vep 90 (386)
T KOG3849|consen 27 DPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIE--YKHPETKNLMVPFEFYFQVEP 90 (386)
T ss_pred CCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchh--ccCCcccccccchhheeeccc
Confidence 359998765 899999999999999999999999999996532 2121 123777887653
No 3
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=36.33 E-value=21 Score=36.65 Aligned_cols=65 Identities=20% Similarity=0.456 Sum_probs=41.6
Q ss_pred CCChhhHHhhchhhhhccce-EEEcCCCcccc-CCCC------chhhhhh------------chhcccccccchhHHHHH
Q 018175 249 WSPIQFYKDEVLPKLLEERL-IRISPFANRLS-FDAP------PAVQRLR------------CLANYEALRFSSPILTMG 308 (360)
Q Consensus 249 wss~~yY~e~VlP~L~k~~V-I~l~~f~~RLa-~~lP------~~iQrLR------------Crvnf~ALrF~~~I~~Lg 308 (360)
|.+-.|++++|+|+-.+.|| +.+.|-|+-.. .++| .+++|+- |.-+|.+-- ..++-++.
T Consensus 181 w~nl~yFL~~v~PvAEe~gV~laiHPDDPP~~~~GlpRi~~~~e~~~~~~~~~~Sp~nGltfC~Gs~g~~~-~ndl~~~i 259 (351)
T PF03786_consen 181 WENLKYFLEAVIPVAEEAGVKLAIHPDDPPWPLFGLPRIVSTAEDLKRILDLVDSPANGLTFCTGSLGAMP-DNDLPEMI 259 (351)
T ss_dssp HHHHHHHHHHHHHHHHHCT-EEEEE--SSSS-BTTB---TTSHHHHHHHHHCT-STTEEEEEECCHHHCST-TS-HHHHH
T ss_pred HHHHHHHHHhhhHHHHHhCCEEEeCCCCCCCccCCCCcccCCHHHHHHHHHhCCCccccEEeecCccccCC-CCCHHHHH
Confidence 77889999999999999999 67778887766 3566 2455553 444555443 34566677
Q ss_pred HHHHHH
Q 018175 309 ETLVAR 314 (360)
Q Consensus 309 ~~LV~R 314 (360)
+.+.+|
T Consensus 260 r~f~~~ 265 (351)
T PF03786_consen 260 REFGER 265 (351)
T ss_dssp HHCHHT
T ss_pred HHHhcc
Confidence 777764
No 4
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=33.31 E-value=63 Score=30.40 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=45.5
Q ss_pred hhhHHhhchhhhhccceEEEcCCCccccCCCCchh-----hhhhchhccccc--------ccchhHHHHHHHHHHHHHhc
Q 018175 252 IQFYKDEVLPKLLEERLIRISPFANRLSFDAPPAV-----QRLRCLANYEAL--------RFSSPILTMGETLVARMKER 318 (360)
Q Consensus 252 ~~yY~e~VlP~L~k~~VI~l~~f~~RLa~~lP~~i-----QrLRCrvnf~AL--------rF~~~I~~Lg~~LV~RmR~~ 318 (360)
++|+.+++.-.|++++++....-...+. ++|+.. +-...| +|.- .+++ ++| +.+++|+++.
T Consensus 127 ~sW~~~~~~~~l~~~~~~~v~~d~~~~~-~~p~~~~~~~~~~~y~R--lhG~~~~~~~~~~Ys~--~eL-~~~a~~i~~~ 200 (230)
T PF01904_consen 127 PSWFTEEVFELLREHGVALVIADSPRLP-SLPPPEPQTTPDFAYVR--LHGRNGEGWYDYRYSD--EEL-EEWAERIRAW 200 (230)
T ss_dssp GGGGCHHHHHHHHHTT-EEEEEE---BT-TC------SSTTEEEEE--E--S-TTTTTB----H--HHH-HHHHHHHHHH
T ss_pred cchhhHHHHHHHHHcCCEEEEeCCcccC-CCCCcccccCCCCeEEe--eccCcccccccccCCH--HHH-HHHHHHHHHH
Confidence 5677788888999999988864444421 223211 111111 2211 1222 223 5666666666
Q ss_pred ccCCCCceEEEecccchhhHHHhH
Q 018175 319 SVNHGGKYISVHLRFEEVSFHSAI 342 (360)
Q Consensus 319 s~~~~g~yIALHLRfE~DMla~a~ 342 (360)
..+...-||-.|=..|.+|..+|-
T Consensus 201 ~~~~~~v~v~fnN~~~g~a~~nA~ 224 (230)
T PF01904_consen 201 AAQGKEVYVFFNNDYEGYAPENAL 224 (230)
T ss_dssp HTCSSEEEEEE-SBCCCHHHHHHH
T ss_pred HHcCCCEEEEEeCCccchHHHHHH
Confidence 555567999999999999986654
No 5
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=29.34 E-value=1.3e+02 Score=31.21 Aligned_cols=90 Identities=20% Similarity=0.335 Sum_probs=63.6
Q ss_pred cCCChhhHHhhchhhhhccce-EEEcCCCccccC-CCCc------hhhhhh------------chhcccccccchhHHHH
Q 018175 248 AWSPIQFYKDEVLPKLLEERL-IRISPFANRLSF-DAPP------AVQRLR------------CLANYEALRFSSPILTM 307 (360)
Q Consensus 248 ~wss~~yY~e~VlP~L~k~~V-I~l~~f~~RLa~-~lP~------~iQrLR------------Crvnf~ALrF~~~I~~L 307 (360)
-|.+-.|++++|.|+-.+.|| +.+.|-|+-..- +||- ++|++. |.-+|.+.-. .+|-++
T Consensus 186 L~~nL~yFL~~ViPVAEe~gVkmaiHPDDPP~pi~GLpRIvst~ed~~~ll~~vdSp~NGiTlCtGS~G~~~d-nDl~~m 264 (362)
T COG1312 186 LWENLAYFLKEVIPVAEEVGVKMAIHPDDPPWPIFGLPRIVSTIEDYQRLLEMVDSPYNGITLCTGSLGARAD-NDLPEM 264 (362)
T ss_pred HHHHHHHHHHhhcchHHhcCceEEeCCCCCCccccCcchhcCCHHHHHHHHHhccCccCCEEEeccccccCcc-ccHHHH
Confidence 377789999999999999999 777788888773 5772 566663 5666765433 556666
Q ss_pred HHHHHHH-----HHhcccCCCCceE-EEecccchhhH
Q 018175 308 GETLVAR-----MKERSVNHGGKYI-SVHLRFEEVSF 338 (360)
Q Consensus 308 g~~LV~R-----mR~~s~~~~g~yI-ALHLRfE~DMl 338 (360)
.....+| +|+-+....+.|+ +.||.=..||+
T Consensus 265 ir~F~~rI~F~H~Rnv~~~~~~sF~E~~hleG~~Dm~ 301 (362)
T COG1312 265 IREFASRIHFVHLRNVKREEPGSFHETAHLEGDTDMV 301 (362)
T ss_pred HHHHhhhchhhhhhhcccCCCCCeeeccccCCCccHH
Confidence 6666555 4554444345554 88999999998
No 6
>PF12355 Dscam_C: Down syndrome cell adhesion molecule C terminal ; InterPro: IPR021012 This entry is specific to the insecta, predominantly Drosophila spp. This entry is found in association with PF00047 from PFAM, PF07679 from PFAM and PF00041 from PFAM. The Down syndrome cell adhesion molecule (Dscam) belongs to a family of cell membrane molecules involved in the differentiation of the nervous system. This is the C-terminal cytoplasmic tail region of Dscam. In Drosophila melanogaster (Fruit fly) the gene has at least 59 different transcripts. Dscam may play a role in the nervous and immune systems [].
Probab=28.88 E-value=33 Score=30.21 Aligned_cols=15 Identities=40% Similarity=0.990 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCC
Q 018175 9 SGHTTPSPPASPRRS 23 (360)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (360)
.|+++|-|||+|||-
T Consensus 58 ~~~gSPePPpPPPRn 72 (124)
T PF12355_consen 58 PGNGSPEPPPPPPRN 72 (124)
T ss_pred CCCCCCCCCCcCCCC
Confidence 356688888877643
No 7
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=22.68 E-value=25 Score=32.24 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=20.7
Q ss_pred CcEeecccccccccCCCCCCCccCCHHH
Q 018175 184 ATLVIPNFHYHSIWRDPSKFRDIYDEDY 211 (360)
Q Consensus 184 ATLVlP~l~~~S~WkD~S~F~DIFDvdh 211 (360)
||+|| ..+.+|+|.|.|.-++|.||
T Consensus 26 A~IIL---eah~vW~DgsGyQ~LlDaDH 50 (161)
T PF10365_consen 26 ARIIL---EAHNVWGDGSGYQMLLDADH 50 (161)
T ss_pred eEEEE---eccccccCCcceEEEEcCCc
Confidence 55554 56789999999999999998
No 8
>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap). These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].
Probab=20.38 E-value=33 Score=32.39 Aligned_cols=52 Identities=27% Similarity=0.351 Sum_probs=34.4
Q ss_pred ccccccchhHHHHHHHHHH---HHHhcc------------cCCCCceEEE----ecccchhhHHHhHHHHH
Q 018175 295 YEALRFSSPILTMGETLVA---RMKERS------------VNHGGKYISV----HLRFEEVSFHSAINVVA 346 (360)
Q Consensus 295 f~ALrF~~~I~~Lg~~LV~---RmR~~s------------~~~~g~yIAL----HLRfE~DMla~a~~g~a 346 (360)
-.+|+=.++....+++.++ |+|... .-..|||.+. ||||++|=++..|..|-
T Consensus 60 k~~lk~~~~~~~~aq~afn~~IR~RD~~~~CiSCG~~~~~~~dagHy~s~g~~~~lRF~~~N~~~qC~~CN 130 (189)
T PF05766_consen 60 KEALKPRSDWLKEAQKAFNKYIRLRDAGKPCISCGRKHGGQWDAGHYRSRGAAPELRFNEDNIHAQCKHCN 130 (189)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhcCCCcccCCCcCCCCcccccccccccCcccccChhhHhHcCCccc
Confidence 3355555555556666664 355321 1235899866 89999999999999883
No 9
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=20.36 E-value=1.5e+02 Score=30.22 Aligned_cols=150 Identities=20% Similarity=0.236 Sum_probs=74.5
Q ss_pred CceEEEEecCChhHHHHHHHHHHHHHHHhcCcEeecccccccccCCCC----CCCccCCHHHHHHhcc--CCceEeccCc
Q 018175 154 NGYISVEANGGLNQQRISICNAVAVAGYLNATLVIPNFHYHSIWRDPS----KFRDIYDEDYFTSVLQ--NDVRVVNKIP 227 (360)
Q Consensus 154 nGYL~V~~nGGLNQqR~~IcDAVaVAriLNATLVlP~l~~~S~WkD~S----~F~DIFDvdhFI~sL~--~dVrIVk~LP 227 (360)
+.|++.+--+|+|.-=-+++-|-.+|+-.|.||||= |+++- .|...|++ |-+-.+ ..|+|+-+=+
T Consensus 2 ~r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~id-------w~~s~~~~~~f~n~f~~--ffepv~~i~~~~~~~~d~ 72 (321)
T PF05830_consen 2 QRFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVID-------WRGSCYLDQPFTNAFPV--FFEPVEDIAGVRVICDDR 72 (321)
T ss_dssp --EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE--------BT-TT-SSTTSBSHHH--HB---SEETTEEEE-SGG
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEE-------cCCceecCCcccccCCc--ccchhhhhcCceeEecch
Confidence 578999999999999999999999999999999995 66543 36555544 444444 3455552111
Q ss_pred -hhHHHhhcccCCcceecccccCCChh---------h-HH--hhchhhhhc------cceEEEcCCCccccCCCCchhhh
Q 018175 228 -EYIMERFDHNMSNVYNFRVKAWSPIQ---------F-YK--DEVLPKLLE------ERLIRISPFANRLSFDAPPAVQR 288 (360)
Q Consensus 228 -~~l~~~~~~~~~~i~~~~v~~wss~~---------y-Y~--e~VlP~L~k------~~VI~l~~f~~RLa~~lP~~iQr 288 (360)
.++ +..-++-+.-|-.|. + +. +++--+++- ..||.-+ +|. +--+-+.
T Consensus 73 i~~~--------~~~g~~fp~~w~~p~~~~~~~pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~----c~~--~~c~~~a 138 (321)
T PF05830_consen 73 INQF--------SFPGPFFPAWWNKPSIDCVYRPDEQIFRERDELRQLFQSQEDHEANTVVCDA----CLM--WRCDEEA 138 (321)
T ss_dssp GGT------------SSEESGGGGS-GGGGS---HHHHHHHHHHHHHHHHSSS--S-SEEEE-S------T--TSS-HHH
T ss_pred hhhh--------cCCCCcChhHHhCCCcceecCChHHHhhhhHHHHHHhhcccccccchhhhHh----hcC--CcchhHH
Confidence 111 011111111222221 1 11 111122221 2344433 222 2223344
Q ss_pred hhchhcccccccchhHHHHHHHHHHHHHhcccCCCCceEEEeccc
Q 018175 289 LRCLANYEALRFSSPILTMGETLVARMKERSVNHGGKYISVHLRF 333 (360)
Q Consensus 289 LRCrvnf~ALrF~~~I~~Lg~~LV~RmR~~s~~~~g~yIALHLRf 333 (360)
.||- |..|+-+++|++..+.+.+.-=. +..=|++|.|.
T Consensus 139 eR~i--f~slkpR~eIqarID~iy~ehf~-----g~~~IGVHVRh 176 (321)
T PF05830_consen 139 EREI--FSSLKPRPEIQARIDAIYREHFA-----GYSVIGVHVRH 176 (321)
T ss_dssp HHHH--HHHS-B-HHHHHHHHHHHHHHTT-----TSEEEEEEE--
T ss_pred HHHH--HHhCCCCHHHHHHHHHHHHHHcC-----CCceEEEEEec
Confidence 4443 88999999999999998866432 45689999993
No 10
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=19.64 E-value=86 Score=34.12 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=45.4
Q ss_pred hhhhhhchhccc----------ccccchhHHHHHHHHHHHHHhcccCCCCceEEEecccchhhHHHhHH-HHHHHHHHhH
Q 018175 285 AVQRLRCLANYE----------ALRFSSPILTMGETLVARMKERSVNHGGKYISVHLRFEEVSFHSAIN-VVAELLFIVI 353 (360)
Q Consensus 285 ~iQrLRCrvnf~----------ALrF~~~I~~Lg~~LV~RmR~~s~~~~g~yIALHLRfE~DMla~a~~-g~aelfq~~~ 353 (360)
+.|--.+...|. .++|.++|..++.+....|=. |=|||+=.+ .|-+ |..+||=|+|
T Consensus 464 e~~le~algsF~ap~rpl~~~~~~ey~d~V~~~aRRfFhhLLR------------~~rfekAFl-LAvdi~~~DLFmdlh 530 (545)
T PF11768_consen 464 EAQLEAALGSFYAPTRPLSDATVLEYRDPVSDLARRFFHHLLR------------YQRFEKAFL-LAVDIGDRDLFMDLH 530 (545)
T ss_pred HHHHHHHHhhccCCCcCccHHHHHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHH-HHHhccchHHHHHHH
Confidence 355556677777 599999999999999987765 668999887 5655 7889999998
Q ss_pred h
Q 018175 354 T 354 (360)
Q Consensus 354 t 354 (360)
-
T Consensus 531 ~ 531 (545)
T PF11768_consen 531 Y 531 (545)
T ss_pred H
Confidence 3
Done!