Query 018175
Match_columns 360
No_of_seqs 178 out of 364
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 11:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 98.4 1.5E-06 5.1E-11 85.2 10.5 70 151-224 19-100 (408)
2 3zy2_A Putative GDP-fucose pro 98.0 1.5E-05 5.2E-10 78.7 9.6 66 152-223 6-75 (362)
3 2hhc_A NODZ, nodulation fucosy 85.0 1.3 4.6E-05 41.4 6.1 52 153-207 3-54 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 82.7 15 0.0005 37.7 13.1 52 154-209 145-199 (526)
5 2hhc_A NODZ, nodulation fucosy 40.7 17 0.0006 33.7 3.3 36 295-335 145-180 (330)
6 3l32_A Phosphoprotein; antipar 27.8 23 0.00079 25.3 1.3 21 297-317 2-22 (45)
7 2nyg_A YOKD protein; PFAM02522 20.9 81 0.0028 29.7 4.1 37 153-193 29-73 (273)
8 3mpy_A Ethanolamine utilizatio 16.2 2.1E+02 0.007 23.4 5.0 40 154-193 38-80 (103)
9 2x4k_A 4-oxalocrotonate tautom 12.8 2.3E+02 0.0079 18.9 3.9 29 156-184 5-36 (63)
10 3n2q_A Sex pheromone staph-CAM 12.5 1.3E+02 0.0046 28.7 3.3 16 304-319 110-125 (287)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=98.36 E-value=1.5e-06 Score=85.23 Aligned_cols=70 Identities=20% Similarity=0.409 Sum_probs=54.5
Q ss_pred CCCCceEEEEec-C-ChhHHHHHHHHHHHHHHHhcCc----EeecccccccccCCCC------CCCccCCHHHHHHhccC
Q 018175 151 PESNGYISVEAN-G-GLNQQRISICNAVAVAGYLNAT----LVIPNFHYHSIWRDPS------KFRDIYDEDYFTSVLQN 218 (360)
Q Consensus 151 ~~snGYL~V~~n-G-GLNQqR~~IcDAVaVAriLNAT----LVlP~l~~~S~WkD~S------~F~DIFDvdhFI~sL~~ 218 (360)
...++||+-..| | |.|+||...-.|.+.|+.||.| ||||-...---|+-.+ .|++.||++.+ +.
T Consensus 19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~ 94 (408)
T 4ap5_A 19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NK 94 (408)
T ss_dssp -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HT
T ss_pred ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hh
Confidence 356899999875 4 8999999999999999999999 9999665433455322 49999999875 45
Q ss_pred CceEec
Q 018175 219 DVRVVN 224 (360)
Q Consensus 219 dVrIVk 224 (360)
.|+||.
T Consensus 95 ~vpVI~ 100 (408)
T 4ap5_A 95 NIPVIE 100 (408)
T ss_dssp TSCEEE
T ss_pred hCCeeE
Confidence 666763
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.02 E-value=1.5e-05 Score=78.73 Aligned_cols=66 Identities=30% Similarity=0.410 Sum_probs=51.2
Q ss_pred CCCceEEEE-ecCChhHHHHHHHHHHHHHHHhcCcEeecccccccccCCCCC---CCccCCHHHHHHhccCCceEe
Q 018175 152 ESNGYISVE-ANGGLNQQRISICNAVAVAGYLNATLVIPNFHYHSIWRDPSK---FRDIYDEDYFTSVLQNDVRVV 223 (360)
Q Consensus 152 ~snGYL~V~-~nGGLNQqR~~IcDAVaVAriLNATLVlP~l~~~S~WkD~S~---F~DIFDvdhFI~sL~~dVrIV 223 (360)
.+||||+-= |-|-+.||-....-+.+.|+.||.|||||-+-.-.. . .+. |++.|+++. |+..-|||
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~-~~~~vpf~~yF~v~~----l~~yhrvi 75 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-P-ETKMIPFEFLFQVGT----VAKYTRVV 75 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-S-SCEEECHHHHBCHHH----HTTTSCEE
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-C-cccccchhheeecch----hhhhceee
Confidence 469998775 999999999999999999999999999997653222 1 143 899999876 44444555
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=85.00 E-value=1.3 Score=41.39 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=40.9
Q ss_pred CCceEEEEecCChhHHHHHHHHHHHHHHHhcCcEeecccccccccCCCCCCCccC
Q 018175 153 SNGYISVEANGGLNQQRISICNAVAVAGYLNATLVIPNFHYHSIWRDPSKFRDIY 207 (360)
Q Consensus 153 snGYL~V~~nGGLNQqR~~IcDAVaVAriLNATLVlP~l~~~S~WkD~S~F~DIF 207 (360)
+..||++...|||.+|--+++.|.++|...|.+|+|--.. ..|-. ..|.+.|
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f 54 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF 54 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC
Confidence 4679999999999999999999999999999998886443 22321 2355666
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=82.67 E-value=15 Score=37.72 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=40.8
Q ss_pred CceEEEEe--cCChhHHHHHHHHHHHHHHHhcCcEeecccccccccCC-CCCCCccCCH
Q 018175 154 NGYISVEA--NGGLNQQRISICNAVAVAGYLNATLVIPNFHYHSIWRD-PSKFRDIYDE 209 (360)
Q Consensus 154 nGYL~V~~--nGGLNQqR~~IcDAVaVAriLNATLVlP~l~~~S~WkD-~S~F~DIFDv 209 (360)
..||+... ..|+..+-..++-|..+|..+|.|||+-.=. |.- ...|+++|+.
T Consensus 145 aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P 199 (526)
T 2de0_X 145 AKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP 199 (526)
T ss_dssp SCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC
T ss_pred CCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC
Confidence 47888886 4799999999999999999999999995432 442 2467777764
No 5
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=40.74 E-value=17 Score=33.74 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=26.5
Q ss_pred ccccccchhHHHHHHHHHHHHHhcccCCCCceEEEecccch
Q 018175 295 YEALRFSSPILTMGETLVARMKERSVNHGGKYISVHLRFEE 335 (360)
Q Consensus 295 f~ALrF~~~I~~Lg~~LV~RmR~~s~~~~g~yIALHLRfE~ 335 (360)
|.-|+++++|++..+.+.+.+-. +.++|+||.|.=.
T Consensus 145 ~~yl~p~~~i~~~i~~~~~~~~~-----~~~~VGVHIRrgD 180 (330)
T 2hhc_A 145 FRNIKLRSEIRARIDALYEEHFS-----GHSIIGVHVRHGN 180 (330)
T ss_dssp HHHSCBCHHHHHHHHHHHHHHTT-----TSEEEEEEECC--
T ss_pred HhcCCccHHHHHHHHHHHHHhcc-----CCceEEEEEecCC
Confidence 46789999999988888765322 3599999999443
No 6
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=27.82 E-value=23 Score=25.35 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=17.8
Q ss_pred ccccchhHHHHHHHHHHHHHh
Q 018175 297 ALRFSSPILTMGETLVARMKE 317 (360)
Q Consensus 297 ALrF~~~I~~Lg~~LV~RmR~ 317 (360)
++-|+.=+.++|-.+|.||++
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHc
Confidence 345777889999999999997
No 7
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=20.87 E-value=81 Score=29.66 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=21.0
Q ss_pred CCceEEEEec--------CChhHHHHHHHHHHHHHHHhcCcEeeccccc
Q 018175 153 SNGYISVEAN--------GGLNQQRISICNAVAVAGYLNATLVIPNFHY 193 (360)
Q Consensus 153 snGYL~V~~n--------GGLNQqR~~IcDAVaVAriLNATLVlP~l~~ 193 (360)
...=|+|+++ ||.+-...++-|+| =-+.|||+|.+-.
T Consensus 29 ~Gd~llVHsSl~~lG~v~gg~~~vi~AL~~~v----g~~GTLvmPtft~ 73 (273)
T 2nyg_A 29 KGMTVLVHSSLSSIGWVNGGAVAVIQALIDVV----TEEGTIVMPSQSV 73 (273)
T ss_dssp TTCEEEEEECSGGGCCBTTHHHHHHHHHHHHH----TTTSEEEEECCCT
T ss_pred CCCEEEEEechHHhCCCCCCHHHHHHHHHHHh----CCCCeEEEecccc
Confidence 3446677764 66443333333322 1258999998875
No 8
>3mpy_A Ethanolamine utilization protein EUTM; bacterial microcompartment, shell protein, ethanolamine AMMO lyase, carboxysome, membrane protein; 2.00A {Escherichia coli} PDB: 3mpw_G 3i6p_A
Probab=16.19 E-value=2.1e+02 Score=23.44 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=34.1
Q ss_pred CceEEEEecCChhHHHHHHHHHHHHHH---HhcCcEeeccccc
Q 018175 154 NGYISVEANGGLNQQRISICNAVAVAG---YLNATLVIPNFHY 193 (360)
Q Consensus 154 nGYL~V~~nGGLNQqR~~IcDAVaVAr---iLNATLVlP~l~~ 193 (360)
.|+.++-..|....-+.++-.+..+|. .+-.+.|||.-+.
T Consensus 38 ~G~~~v~i~GDVsaV~aAv~ag~~aa~~~g~lvs~~VIprP~~ 80 (103)
T 3mpy_A 38 GGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHG 80 (103)
T ss_dssp TTEEEEEEEECHHHHHHHHHHHHHHHHHHSCEEEEEEESSCCT
T ss_pred CCEEEEEEEEeHHHHHHHHHHHHHHHhhcCCEEEEEEeCCCCH
Confidence 489999999999999999999888886 4667799998774
No 9
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=12.79 E-value=2.3e+02 Score=18.87 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=20.9
Q ss_pred eEEEEecCChhH-HHHHHHHHH--HHHHHhcC
Q 018175 156 YISVEANGGLNQ-QRISICNAV--AVAGYLNA 184 (360)
Q Consensus 156 YL~V~~nGGLNQ-qR~~IcDAV--aVAriLNA 184 (360)
|+.|..++|... |+.++++++ +++..+|.
T Consensus 5 ~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~ 36 (63)
T 2x4k_A 5 IVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGA 36 (63)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 788999988754 588888877 45566554
No 10
>3n2q_A Sex pheromone staph-CAM373; structural genomics, MCSG, PSI-2, protein structure initiati midwest center for structural genomics; 2.55A {Bacillus cereus}
Probab=12.46 E-value=1.3e+02 Score=28.65 Aligned_cols=16 Identities=6% Similarity=0.194 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhcc
Q 018175 304 ILTMGETLVARMKERS 319 (360)
Q Consensus 304 I~~Lg~~LV~RmR~~s 319 (360)
=+++|+++|+|||++.
T Consensus 110 Gk~~A~~iv~rlR~~~ 125 (287)
T 3n2q_A 110 GTEVAKQLIEAINKND 125 (287)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4578999999999853
Done!