BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018176
(360 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P22711|TIN_DROME Muscle-specific homeobox protein tinman OS=Drosophila melanogaster
GN=tin PE=2 SV=2
Length = 416
Score = 35.0 bits (79), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 34 KIMVQMKQVWNWFQNRRYAIRAKSIKSPG-----KLNVTPLARDDSTPGRNVPQPVAAPI 88
K+ + QV WFQNRRY + I G KL PL DS P + P
Sbjct: 337 KLNLSATQVKIWFQNRRYKSKRGDIDCEGIAKHLKLKSEPL---DS--------PTSLPP 385
Query: 89 PIPMSASVPPT 99
PIP PPT
Sbjct: 386 PIPNHVMWPPT 396
>sp|P11605|NIA1_TOBAC Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1
Length = 904
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 22/142 (15%)
Query: 10 NAMPSREILV-ALAEKFSESPERK-GKIMVQMKQVWNWFQNRRYAIRAK-SIKSPGKLNV 66
+ + ++EI V A E + PE+ +M M W R K ++ P K +
Sbjct: 434 DLLSAKEIAVRAWDETLNTQPEKLIWNVMGMMNNCW---------FRVKMNVCKPHKGEI 484
Query: 67 TPLARDDSTPGRNVPQPVAAPIPIPMSASVPPTMPASANVPSVSTAGRAASESTFMEFEA 126
+ + PG +A + +SA PPT+ S + P ++TA + S S E
Sbjct: 485 GIVFEHPTQPGNQSGGWMAKERHLEISAEAPPTLKKSISTPFMNTASKMYSMS---EVRK 541
Query: 127 KSARDGAW-------YDVSAFL 141
S+ D AW YD + FL
Sbjct: 542 HSSADSAWIIVHGHIYDATRFL 563
>sp|P17570|NIA_SOLLC Nitrate reductase [NADH] OS=Solanum lycopersicum GN=NIA PE=3 SV=1
Length = 911
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 22/142 (15%)
Query: 10 NAMPSREILV-ALAEKFSESPERK-GKIMVQMKQVWNWFQNRRYAIRAK-SIKSPGKLNV 66
+ + ++EI V A E + PE+ +M M W R K ++ P K +
Sbjct: 439 DLLSAKEIAVRATDETLNTQPEKLIWNVMGMMNNCW---------FRVKMNVCKPHKGEI 489
Query: 67 TPLARDDSTPGRNVPQPVAAPIPIPMSASVPPTMPASANVPSVSTAGRAASESTFMEFEA 126
+ + PG +A + +SA PPT+ S + P ++TA + S S E
Sbjct: 490 GIVFEHPTQPGNQSGGWMAKERHLEISAVAPPTLKKSISTPFMNTASKMYSMS---EVRK 546
Query: 127 KSARDGAW-------YDVSAFL 141
++ D AW YD S FL
Sbjct: 547 HNSSDSAWIIVHGHIYDASRFL 568
>sp|A6NCS4|NKX26_HUMAN Homeobox protein Nkx-2.6 OS=Homo sapiens GN=NKX2-6 PE=1 SV=1
Length = 301
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 24/105 (22%)
Query: 14 SREILVALAEKFSE-----SPERK---GKIMVQMKQVWNWFQNRRYAIRA----KSIK-- 59
S+ ++AL +F + +PER+ + + QV WFQNRRY + KS++
Sbjct: 140 SQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDKSLELA 199
Query: 60 ----SPGKLNVTPLARDDSTPGRNV--PQPVAAPIPIPMSASVPP 98
+P ++ V L RD G+ P P A P P SA+V P
Sbjct: 200 GHPLTPRRVAVPVLVRD----GKPCLGPGPGAPAFPSPYSAAVSP 240
>sp|B7ZQA9|P5F12_XENLA POU domain, class 5, transcription factor 1.2 OS=Xenopus laevis
GN=pou5f1.2 PE=1 SV=1
Length = 445
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 15/67 (22%)
Query: 45 WFQNRRYAIRAKSIKSPGKLNVTPLARDDSTPGRNVPQ----PVAAPIPIP--MSASVPP 98
WF NRR GK V P R++ + PQ P P P+P M + V P
Sbjct: 359 WFCNRRQK---------GKRQVYPYIRENGGEPYDAPQTLTPPSQGPFPLPQVMPSQVFP 409
Query: 99 TMPASAN 105
T+P AN
Sbjct: 410 TVPLGAN 416
>sp|P43379|CDGT2_BACCI Cyclomaltodextrin glucanotransferase OS=Bacillus circulans GN=cgt
PE=1 SV=1
Length = 713
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 239 EEIVPLRKVCRRPETDYRLQQLHAMNDSVMVDHQKTSADLSASTATRVTVSSAEMMHKQV 298
+++ PLRK C P Y Q +N+ V++ +K ++++ R + A + +
Sbjct: 419 QKLAPLRK-CN-PAIAYGSTQERWINNDVLIYERKFGSNVAVVAVNRNLNAPASI--SGL 474
Query: 299 NANIAQGAPLSHSFVSVPAQTVEPKNASASSGISSSNPAVPPGGAAVISGTAAT-TAATG 357
++ QG S+ V + S SG ++SN + GG AV TAAT T G
Sbjct: 475 VTSLPQG-----SYNDVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIG 529
Query: 358 H 358
H
Sbjct: 530 H 530
>sp|Q6BK07|STU1_DEBHA Protein STU1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767
/ JCM 1990 / NBRC 0083 / IGC 2968) GN=STU1 PE=3 SV=2
Length = 1529
Score = 31.6 bits (70), Expect = 9.3, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 230 LVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHAMNDSVMVDHQKTSADLSASTATRVTVS 289
L+R + D E ++ K + + +L+ + S D QK +++ S +++ S
Sbjct: 177 LLRLNSDSDEVLIENIKTLFKDYYSLKHNRLYKFDLSKEFDTQKIPSNVHESIISQIGTS 236
Query: 290 SAEMMHKQVNANIAQGAPLSHSFVSVPAQTVEPKNASASSGISSSN 335
S+ +M KQ +I L H+F+S V + G SSN
Sbjct: 237 SSILM-KQATPDIG----LDHNFISAGTTRVTVNSMGRDKGTISSN 277
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,762,841
Number of Sequences: 539616
Number of extensions: 5218741
Number of successful extensions: 25402
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 24488
Number of HSP's gapped (non-prelim): 1039
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)