Query 018176
Match_columns 360
No_of_seqs 64 out of 66
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 11:08:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cuf_A FLJ21616 protein; homeo 98.7 1.3E-08 4.6E-13 80.5 6.0 57 1-59 22-83 (95)
2 2dmu_A Homeobox protein goosec 97.5 8.5E-05 2.9E-09 55.2 4.8 45 1-57 22-66 (70)
3 2dmt_A Homeobox protein BARH-l 97.5 0.00012 4.1E-09 56.0 4.7 44 1-56 32-75 (80)
4 2e1o_A Homeobox protein PRH; D 97.5 0.00012 4.2E-09 54.5 4.6 44 1-56 22-65 (70)
5 1du6_A PBX1, homeobox protein 97.4 0.00012 4E-09 53.5 4.2 42 2-53 19-61 (64)
6 2dms_A Homeobox protein OTX2; 97.4 0.00022 7.6E-09 54.3 5.9 45 1-57 22-66 (80)
7 1k61_A Mating-type protein alp 97.4 0.00014 4.9E-09 52.4 4.6 44 1-54 13-57 (60)
8 1puf_B PRE-B-cell leukemia tra 97.4 0.00015 5.2E-09 54.3 4.8 46 2-57 17-63 (73)
9 1b72_B Protein (PBX1); homeodo 97.4 0.00013 4.3E-09 56.3 4.5 46 2-57 17-63 (87)
10 2da2_A Alpha-fetoprotein enhan 97.4 0.00014 4.9E-09 53.9 4.6 44 1-56 22-65 (70)
11 2da3_A Alpha-fetoprotein enhan 97.4 0.00014 4.8E-09 55.0 4.6 45 1-57 32-76 (80)
12 2cra_A Homeobox protein HOX-B1 97.4 0.00019 6.6E-09 53.5 4.7 43 1-55 22-64 (70)
13 2djn_A Homeobox protein DLX-5; 97.4 0.00015 5.3E-09 54.0 4.1 42 1-54 22-63 (70)
14 1x2n_A Homeobox protein pknox1 97.3 0.00024 8.1E-09 53.2 5.0 46 1-56 22-68 (73)
15 1uhs_A HOP, homeodomain only p 97.3 0.00018 6.2E-09 53.9 4.3 45 2-57 17-61 (72)
16 3a03_A T-cell leukemia homeobo 97.3 0.0002 7E-09 51.3 4.2 42 1-54 12-53 (56)
17 1x2m_A LAG1 longevity assuranc 97.3 0.00019 6.4E-09 54.7 4.2 42 1-53 15-56 (64)
18 2da4_A Hypothetical protein DK 97.3 9.3E-05 3.2E-09 56.5 2.4 37 11-57 35-71 (80)
19 3rkq_A Homeobox protein NKX-2. 97.3 0.0002 6.7E-09 50.7 4.0 39 2-52 18-56 (58)
20 1fjl_A Paired protein; DNA-bin 97.3 0.0002 6.9E-09 54.7 4.2 43 1-55 33-75 (81)
21 3a02_A Homeobox protein arista 97.3 0.00023 7.8E-09 51.5 4.2 42 1-54 14-55 (60)
22 2k40_A Homeobox expressed in E 97.3 0.00025 8.4E-09 52.3 4.4 45 1-57 16-60 (67)
23 1bw5_A ISL-1HD, insulin gene e 97.3 0.00024 8.3E-09 52.2 4.2 44 1-56 18-61 (66)
24 1akh_A Protein (mating-type pr 97.3 0.00022 7.4E-09 51.5 3.9 40 1-52 20-59 (61)
25 2hdd_A Protein (engrailed home 97.3 0.00029 9.8E-09 51.1 4.4 42 1-54 18-59 (61)
26 2ly9_A Zinc fingers and homeob 97.2 0.00039 1.3E-08 52.0 5.2 44 1-56 21-64 (74)
27 3k2a_A Homeobox protein MEIS2; 97.2 0.00031 1E-08 52.6 4.6 43 2-54 14-57 (67)
28 2da1_A Alpha-fetoprotein enhan 97.2 0.00025 8.5E-09 52.6 3.9 44 1-56 22-65 (70)
29 2dmn_A Homeobox protein TGIF2L 97.2 0.00047 1.6E-08 53.5 5.6 45 2-56 23-68 (83)
30 1mnm_C Protein (MAT alpha-2 tr 97.2 0.00032 1.1E-08 54.4 4.5 43 1-53 42-85 (87)
31 1ig7_A Homeotic protein MSX-1; 97.2 0.00035 1.2E-08 49.9 4.3 41 1-53 15-55 (58)
32 2vi6_A Homeobox protein nanog; 97.2 0.00037 1.3E-08 50.7 4.5 42 1-54 18-59 (62)
33 1nk2_P Homeobox protein VND; h 97.2 0.00032 1.1E-08 53.2 4.2 43 1-55 24-66 (77)
34 1jgg_A Segmentation protein EV 97.2 0.0004 1.4E-08 50.2 4.4 42 1-54 16-57 (60)
35 2hi3_A Homeodomain-only protei 97.2 0.0004 1.4E-08 52.2 4.5 38 10-57 25-62 (73)
36 2l7z_A Homeobox protein HOX-A1 97.2 0.00041 1.4E-08 52.3 4.5 45 1-57 22-66 (73)
37 1lfb_A Liver transcription fac 97.2 0.00041 1.4E-08 56.3 4.9 55 1-57 24-89 (99)
38 1wh5_A ZF-HD homeobox family p 97.2 0.00028 9.5E-09 54.7 3.7 43 1-53 32-76 (80)
39 2dmq_A LIM/homeobox protein LH 97.1 0.00033 1.1E-08 53.2 3.9 45 1-57 22-66 (80)
40 2cqx_A LAG1 longevity assuranc 97.1 0.00046 1.6E-08 52.5 4.7 42 2-54 24-65 (72)
41 1le8_B Mating-type protein alp 97.1 0.00049 1.7E-08 53.1 4.8 45 2-56 18-63 (83)
42 2l9r_A Homeobox protein NKX-3. 97.1 0.00043 1.5E-08 52.9 4.4 45 1-57 19-63 (69)
43 2dn0_A Zinc fingers and homeob 97.1 0.00047 1.6E-08 52.2 4.4 44 1-56 23-66 (76)
44 2da5_A Zinc fingers and homeob 97.1 0.00053 1.8E-08 52.0 4.7 45 1-57 22-66 (75)
45 2dmp_A Zinc fingers and homeob 97.1 0.00052 1.8E-08 53.9 4.7 45 1-57 28-72 (89)
46 2h1k_A IPF-1, pancreatic and d 97.1 0.00048 1.6E-08 50.3 4.2 42 1-54 18-59 (63)
47 2kt0_A Nanog, homeobox protein 97.1 0.00044 1.5E-08 52.9 4.0 42 1-54 37-78 (84)
48 2cue_A Paired box protein PAX6 97.1 0.0004 1.4E-08 53.0 3.8 44 1-56 22-65 (80)
49 1zq3_P PRD-4, homeotic bicoid 97.1 0.00044 1.5E-08 51.4 3.8 45 1-57 17-61 (68)
50 2e19_A Transcription factor 8; 97.0 0.00053 1.8E-08 51.2 4.0 40 2-53 19-58 (64)
51 1puf_A HOX-1.7, homeobox prote 97.0 0.0006 2.1E-08 51.7 4.3 42 1-54 28-69 (77)
52 1b8i_A Ultrabithorax, protein 97.0 0.00063 2.1E-08 52.3 4.4 42 1-54 35-76 (81)
53 1yz8_P Pituitary homeobox 2; D 97.0 0.0002 6.9E-09 53.1 1.4 38 10-57 25-62 (68)
54 2m0c_A Homeobox protein arista 97.0 0.00064 2.2E-08 50.6 4.1 45 1-57 24-68 (75)
55 1ahd_P Antennapedia protein mu 97.0 0.00059 2E-08 50.8 3.8 45 1-57 17-61 (68)
56 3nau_A Zinc fingers and homeob 97.0 0.00054 1.8E-08 53.0 3.6 36 9-54 25-60 (66)
57 3nar_A ZHX1, zinc fingers and 97.0 0.00059 2E-08 54.0 3.9 44 1-56 40-83 (96)
58 1ftt_A TTF-1 HD, thyroid trans 96.9 0.00073 2.5E-08 50.1 4.2 45 1-57 17-61 (68)
59 3a01_A Homeodomain-containing 96.9 0.00068 2.3E-08 53.6 4.0 45 1-57 32-76 (93)
60 2r5y_A Homeotic protein sex co 96.9 0.0008 2.7E-08 52.2 4.1 41 2-54 44-84 (88)
61 1b72_A Protein (homeobox prote 96.9 0.00073 2.5E-08 53.4 3.8 43 2-56 50-92 (97)
62 2da6_A Hepatocyte nuclear fact 96.6 0.0011 3.7E-08 54.9 3.3 54 2-57 22-86 (102)
63 2ecc_A Homeobox and leucine zi 96.5 0.0028 9.5E-08 49.8 4.5 44 2-57 19-62 (76)
64 1wh7_A ZF-HD homeobox family p 96.4 0.0015 5.2E-08 50.8 2.8 34 10-53 43-76 (80)
65 2ecb_A Zinc fingers and homeob 96.4 0.0058 2E-07 48.9 6.1 44 2-57 27-70 (89)
66 2lk2_A Homeobox protein TGIF1; 96.1 0.0041 1.4E-07 50.3 4.0 40 6-55 26-65 (89)
67 3h8z_A FragIle X mental retard 96.1 0.043 1.5E-06 46.9 10.0 109 121-250 5-117 (128)
68 2d5v_A Hepatocyte nuclear fact 95.6 0.0087 3E-07 51.0 4.1 36 10-55 119-154 (164)
69 2ro0_A Histone acetyltransfera 95.5 0.014 4.8E-07 47.3 4.7 45 130-177 34-78 (92)
70 1wi3_A DNA-binding protein SAT 95.4 0.016 5.4E-07 45.7 4.5 35 10-54 30-64 (71)
71 3ask_A E3 ubiquitin-protein li 95.2 0.056 1.9E-06 50.1 8.2 92 125-219 10-109 (226)
72 2eko_A Histone acetyltransfera 95.1 0.011 3.8E-07 47.5 2.9 47 130-179 25-71 (87)
73 3fdr_A Tudor and KH domain-con 95.0 0.021 7E-07 44.5 4.1 56 125-187 35-94 (94)
74 2eqm_A PHD finger protein 20-l 94.9 0.059 2E-06 43.0 6.5 51 122-177 24-75 (88)
75 2rnz_A Histone acetyltransfera 94.6 0.051 1.7E-06 44.5 5.4 44 130-176 36-79 (94)
76 2da7_A Zinc finger homeobox pr 94.4 0.057 1.9E-06 42.5 5.1 36 9-54 26-61 (71)
77 2bud_A Males-absent on the fir 93.8 0.039 1.3E-06 45.2 3.2 43 131-175 27-71 (92)
78 4a4f_A SurviVal of motor neuro 93.5 0.18 6E-06 37.5 6.2 52 188-248 8-59 (64)
79 1wgs_A MYST histone acetyltran 93.4 0.033 1.1E-06 47.4 2.2 46 131-177 25-70 (133)
80 3oa6_A MALE-specific lethal 3 93.4 0.17 5.7E-06 42.6 6.4 69 188-258 19-90 (110)
81 2lcc_A AT-rich interactive dom 92.9 0.038 1.3E-06 43.1 1.7 47 130-179 20-66 (76)
82 3pnw_C Tudor domain-containing 92.8 0.25 8.5E-06 38.2 6.3 64 180-252 5-72 (77)
83 1mhn_A SurviVal motor neuron p 92.5 0.24 8.4E-06 36.0 5.5 55 188-251 3-57 (59)
84 2xsd_C POU domain, class 3, tr 92.4 0.051 1.8E-06 47.0 2.1 46 12-57 105-158 (164)
85 2diq_A Tudor and KH domain-con 92.4 0.086 2.9E-06 42.2 3.2 55 125-188 40-100 (110)
86 4hae_A CDY-like 2, chromodomai 92.2 0.081 2.8E-06 41.6 2.8 48 121-171 13-60 (81)
87 1g5v_A SurviVal motor neuron p 92.1 0.25 8.4E-06 39.5 5.5 54 188-250 10-63 (88)
88 2f5k_A MORF-related gene 15 is 92.0 0.055 1.9E-06 44.7 1.7 42 131-175 34-75 (102)
89 2nzz_A Penetratin conjugated G 91.9 0.016 5.4E-07 40.4 -1.4 18 40-57 1-18 (37)
90 1e3o_C Octamer-binding transcr 91.9 0.061 2.1E-06 46.0 2.0 43 12-54 107-157 (160)
91 2equ_A PHD finger protein 20-l 91.9 0.32 1.1E-05 37.8 5.9 56 184-251 5-60 (74)
92 3d1n_I POU domain, class 6, tr 91.6 0.067 2.3E-06 45.2 1.9 42 12-53 99-148 (151)
93 3db3_A E3 ubiquitin-protein li 91.5 0.45 1.5E-05 42.5 7.1 90 125-217 18-124 (161)
94 1au7_A Protein PIT-1, GHF-1; c 91.5 0.071 2.4E-06 45.2 1.9 43 12-54 93-143 (146)
95 3s6w_A Tudor domain-containing 90.9 0.15 5E-06 36.4 2.8 37 125-165 9-45 (54)
96 3l1p_A POU domain, class 5, tr 90.9 0.08 2.7E-06 45.2 1.6 43 12-54 102-152 (155)
97 3ntk_A Maternal protein tudor; 90.6 0.1 3.5E-06 44.6 2.0 55 126-188 56-113 (169)
98 1mhn_A SurviVal motor neuron p 90.4 0.14 5E-06 37.2 2.4 46 124-176 10-55 (59)
99 3s6w_A Tudor domain-containing 90.2 0.7 2.4E-05 32.8 5.8 51 189-248 2-52 (54)
100 3p8d_A Medulloblastoma antigen 90.1 0.47 1.6E-05 36.6 5.2 53 187-251 5-57 (67)
101 2rsn_A Chromo domain-containin 89.4 0.13 4.4E-06 39.8 1.6 40 132-171 19-58 (75)
102 2d9t_A Tudor domain-containing 89.2 0.8 2.7E-05 35.3 5.9 57 187-252 8-64 (78)
103 3sd4_A PHD finger protein 20; 88.6 0.33 1.1E-05 36.6 3.3 45 122-171 17-61 (69)
104 2d9t_A Tudor domain-containing 88.5 0.26 9E-06 38.0 2.7 56 124-186 16-72 (78)
105 2lrq_A Protein MRG15, NUA4 com 88.0 0.092 3.1E-06 41.8 0.0 38 131-170 24-61 (85)
106 3qii_A PHD finger protein 20; 88.0 0.77 2.6E-05 37.1 5.2 52 186-249 19-70 (85)
107 1g5v_A SurviVal motor neuron p 87.9 0.29 9.9E-06 39.1 2.7 47 123-176 16-62 (88)
108 2ldm_A Uncharacterized protein 87.0 0.12 4.1E-06 41.3 0.0 49 187-247 5-53 (81)
109 4a4f_A SurviVal of motor neuro 86.9 0.34 1.2E-05 35.9 2.4 47 123-176 14-60 (64)
110 2lcc_A AT-rich interactive dom 86.0 2 6.9E-05 33.3 6.5 55 188-247 5-61 (76)
111 3pnw_C Tudor domain-containing 85.8 0.48 1.7E-05 36.6 2.8 39 123-165 23-61 (77)
112 3fdr_A Tudor and KH domain-con 84.1 2.3 7.9E-05 32.8 6.0 55 187-251 26-80 (94)
113 2f5k_A MORF-related gene 15 is 84.1 2.7 9.2E-05 34.6 6.7 52 188-248 22-75 (102)
114 3m9q_A Protein MALE-specific l 84.1 2.4 8.1E-05 35.0 6.4 60 188-247 19-81 (101)
115 1wjq_A KIAA1798 protein; MBT d 83.4 0.73 2.5E-05 38.3 3.1 45 121-170 17-61 (107)
116 3m9p_A MALE-specific lethal 3 83.2 2.6 8.9E-05 35.4 6.4 60 188-248 19-82 (110)
117 4b9w_A TDRD1, tudor domain-con 82.7 0.85 2.9E-05 39.6 3.4 57 124-188 72-133 (201)
118 1wgs_A MYST histone acetyltran 82.3 2.9 9.9E-05 35.4 6.4 55 188-248 12-68 (133)
119 4b9x_A TDRD1, tudor domain-con 82.0 0.91 3.1E-05 40.2 3.4 55 125-188 73-133 (226)
120 2rso_A Chromatin-associated pr 81.0 0.54 1.8E-05 37.6 1.4 37 135-171 31-69 (92)
121 3db3_A E3 ubiquitin-protein li 80.4 3.2 0.00011 37.0 6.2 69 182-252 4-83 (161)
122 2hqx_A P100 CO-activator tudor 80.1 1.5 5E-05 38.8 4.0 55 125-187 73-133 (246)
123 2dnt_A Chromodomain protein, Y 78.8 0.53 1.8E-05 36.2 0.7 40 132-171 11-50 (78)
124 2ro0_A Histone acetyltransfera 78.2 5.2 0.00018 32.3 6.3 53 186-247 21-75 (92)
125 1g6z_A CLR4 protein; transfera 77.3 0.97 3.3E-05 34.0 1.7 40 132-171 6-46 (70)
126 2k3y_A Chromatin modification- 76.6 2.1 7.1E-05 37.0 3.8 26 188-217 9-34 (136)
127 1q3l_A Heterochromatin protein 75.4 0.78 2.7E-05 35.1 0.7 40 131-171 13-52 (69)
128 2diq_A Tudor and KH domain-con 74.8 3.4 0.00012 32.8 4.4 55 188-252 32-86 (110)
129 1pfb_A Polycomb protein; chrom 74.2 0.95 3.3E-05 32.5 0.9 36 135-171 4-39 (55)
130 1wjr_A KIAA1617 protein; MBT d 74.2 1.9 6.4E-05 36.4 2.9 45 122-171 16-62 (127)
131 2eko_A Histone acetyltransfera 73.8 4.5 0.00015 32.4 4.8 57 188-249 9-68 (87)
132 3fdt_A Chromobox protein homol 73.8 0.99 3.4E-05 33.0 0.9 36 135-171 4-39 (59)
133 3h91_A Chromobox protein homol 73.7 0.94 3.2E-05 32.5 0.8 36 135-171 4-39 (54)
134 3i91_A Chromobox protein homol 73.6 0.95 3.3E-05 32.4 0.8 36 135-171 4-39 (54)
135 2rnz_A Histone acetyltransfera 73.0 6 0.0002 32.2 5.4 52 187-247 24-77 (94)
136 3lwe_A M-phase phosphoprotein 72.9 0.84 2.9E-05 33.7 0.4 36 135-171 5-40 (62)
137 3f2u_A Chromobox protein homol 72.0 0.98 3.3E-05 32.5 0.5 36 135-171 3-38 (55)
138 1pdq_A Polycomb protein; methy 71.5 1.3 4.3E-05 34.3 1.1 40 131-171 17-56 (72)
139 2wac_A CG7008-PA; unknown func 70.8 2.5 8.6E-05 36.0 2.9 55 125-188 59-118 (218)
140 2dnv_A Chromobox protein homol 69.2 1.3 4.6E-05 32.8 0.8 38 133-171 9-46 (64)
141 3h8z_A FragIle X mental retard 69.0 2.6 8.9E-05 35.9 2.6 49 122-177 65-117 (128)
142 2k3y_A Chromatin modification- 67.8 2 6.7E-05 37.2 1.6 20 152-171 78-97 (136)
143 3g7l_A Chromo domain-containin 67.7 2.2 7.6E-05 31.4 1.6 40 131-171 4-44 (61)
144 3bdl_A Staphylococcal nuclease 66.5 3.7 0.00013 41.1 3.5 58 125-188 419-480 (570)
145 2k1b_A Chromobox protein homol 66.4 1.4 4.6E-05 34.1 0.3 38 133-171 20-57 (73)
146 1ap0_A Modifier protein 1; chr 66.4 2 7E-05 32.6 1.3 37 134-171 13-49 (73)
147 3m9q_A Protein MALE-specific l 65.1 2.4 8.1E-05 35.0 1.5 26 149-175 57-82 (101)
148 3oa6_A MALE-specific lethal 3 64.5 2.9 9.8E-05 35.1 1.9 21 151-171 59-79 (110)
149 2kvm_A Chromobox protein homol 62.7 2.3 8E-05 32.3 1.0 39 132-171 11-49 (74)
150 2d9u_A Chromobox protein homol 62.6 2.5 8.7E-05 32.2 1.2 39 132-171 8-46 (74)
151 2wac_A CG7008-PA; unknown func 61.9 14 0.00048 31.4 5.8 83 151-247 16-99 (218)
152 3m9p_A MALE-specific lethal 3 59.4 3.6 0.00012 34.5 1.6 48 122-170 27-78 (110)
153 2lrq_A Protein MRG15, NUA4 com 63.8 1.9 6.6E-05 34.1 0.0 39 188-235 12-50 (85)
154 2bud_A Males-absent on the fir 57.9 20 0.00069 29.2 5.7 53 190-247 16-70 (92)
155 1oz2_A Lethal(3)malignant brai 57.7 26 0.00091 33.4 7.5 99 122-238 46-188 (331)
156 3mts_A Histone-lysine N-methyl 57.1 3.7 0.00013 30.7 1.2 34 137-171 3-36 (64)
157 2hqx_A P100 CO-activator tudor 55.7 21 0.00071 31.4 6.0 53 188-251 65-117 (246)
158 4b9w_A TDRD1, tudor domain-con 53.1 38 0.0013 29.1 7.1 56 187-252 64-119 (201)
159 2l8d_A Lamin-B receptor; DNA b 49.7 40 0.0014 26.3 5.9 50 188-247 9-58 (66)
160 2ee1_A Chromodomain helicase-D 49.5 5.1 0.00017 30.4 0.9 39 132-170 9-47 (64)
161 4hcz_A PHD finger protein 1; p 48.6 34 0.0012 26.0 5.3 31 187-220 2-32 (58)
162 4b9x_A TDRD1, tudor domain-con 45.1 47 0.0016 29.2 6.5 52 187-248 64-115 (226)
163 2e5p_A Protein PHF1, PHD finge 45.1 25 0.00087 27.5 4.2 36 182-220 3-38 (68)
164 2dig_A Lamin-B receptor; tudor 41.8 49 0.0017 25.9 5.3 52 188-249 12-63 (68)
165 3ask_A E3 ubiquitin-protein li 41.0 40 0.0014 31.1 5.6 64 190-255 4-69 (226)
166 2eqk_A Tudor domain-containing 40.4 36 0.0012 27.4 4.5 58 187-258 20-78 (85)
167 2r58_A Polycomb protein SCM; M 39.1 19 0.00064 33.8 3.2 45 121-170 147-191 (265)
168 2equ_A PHD finger protein 20-l 37.9 21 0.00073 27.5 2.8 30 125-160 17-46 (74)
169 3e9g_A Chromatin modification- 37.4 18 0.0006 31.3 2.5 21 151-171 75-95 (130)
170 2biv_A SCML2 protein, sex COMB 35.4 23 0.0008 32.6 3.2 46 121-171 175-220 (243)
171 2biv_A SCML2 protein, sex COMB 33.9 20 0.0007 33.0 2.5 99 122-235 67-208 (243)
172 2eqj_A Metal-response element- 33.5 54 0.0018 25.4 4.4 33 183-218 8-40 (66)
173 3bdl_A Staphylococcal nuclease 33.3 63 0.0022 32.3 6.1 54 187-251 410-463 (570)
174 2r58_A Polycomb protein SCM; M 32.5 22 0.00075 33.3 2.5 101 122-237 39-182 (265)
175 3dlm_A Histone-lysine N-methyl 32.2 70 0.0024 29.6 5.7 102 130-247 20-121 (213)
176 3ut1_A Lethal(3)malignant brai 31.2 1.1E+02 0.0036 29.3 7.0 78 136-234 58-179 (324)
177 3ntk_A Maternal protein tudor; 30.3 87 0.003 26.3 5.6 43 188-240 47-90 (169)
178 3feo_A MBT domain-containing p 30.1 1.6E+02 0.0054 29.3 8.3 96 122-234 47-191 (437)
179 2k0m_A Uncharacterized protein 29.2 46 0.0016 27.3 3.6 32 212-246 63-94 (104)
180 3e9g_A Chromatin modification- 29.1 39 0.0014 29.2 3.3 24 188-215 7-30 (130)
181 2eqk_A Tudor domain-containing 29.0 31 0.0011 27.8 2.4 48 122-177 26-73 (85)
182 1x3p_A Cpsrp43; chromo-2 domai 27.3 14 0.00046 26.8 0.1 34 136-171 2-36 (54)
183 2epb_A Chromodomain-helicase-D 25.9 19 0.00063 27.1 0.6 40 131-170 8-52 (68)
184 3h6z_A Polycomb protein SFMBT; 25.4 41 0.0014 33.6 3.1 46 121-171 380-425 (447)
185 4b2u_A S67; toxin, ICK; NMR {S 23.0 36 0.0012 23.4 1.6 22 184-208 9-32 (36)
186 2m0o_A PHD finger protein 1; t 21.8 94 0.0032 24.9 3.9 31 187-220 25-55 (79)
187 1w8x_P Protein P16, protein S, 21.4 41 0.0014 27.9 1.9 22 41-62 18-39 (117)
188 2b2y_C CHD-1, chromodomain-hel 20.9 32 0.0011 29.0 1.1 38 133-171 35-78 (115)
No 1
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.73 E-value=1.3e-08 Score=80.46 Aligned_cols=57 Identities=26% Similarity=0.394 Sum_probs=51.0
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhc-----CCCCCCCCcccchhhHHHHHhhhhhhhhhcccC
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFS-----ESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 59 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs-----~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~~~ 59 (360)
||+.|++ +..|+.+.++.||++++ .+++++|+..|+.+||++||||||...+.+...
T Consensus 22 Le~~F~~--~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 22 MESYFNE--NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhc--CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 5777876 78999999999999999 999999999999999999999999987766543
No 2
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=8.5e-05 Score=55.25 Aligned_cols=45 Identities=31% Similarity=0.483 Sum_probs=36.1
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||+.++. +..|+.+-...||++.+ +.-.||+.||||||...+.+.
T Consensus 22 Le~~F~~--~~yp~~~~r~~LA~~l~----------l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 22 LENLFQE--TKYPDVGTREQLARKVH----------LREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHc--cCCCCHHHHHHHHHHHC----------CCHHHeehccccccccccccC
Confidence 4666654 67899999999999886 567999999999998765443
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=0.00012 Score=55.98 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=35.0
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 56 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k 56 (360)
||+.|+. +..|+..-...||++.+ |.-+||+.||||||...+..
T Consensus 32 Le~~F~~--~~yp~~~~r~~LA~~l~----------L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 32 LEKRFEK--QKYLSTPDRIDLAESLG----------LSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHh--cCCCCHHHHHHHHHHhC----------CCHHHeeeccHHHHHHhhcc
Confidence 4566654 57899999999999887 56789999999998875433
No 4
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.45 E-value=0.00012 Score=54.51 Aligned_cols=44 Identities=30% Similarity=0.375 Sum_probs=35.1
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 56 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k 56 (360)
||+.++. +..|+..-...||.+.+ |.-+||+.||||||...+..
T Consensus 22 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 22 LEKKFET--QKYLSPPERKRLAKMLQ----------LSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHTT----------CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc--CCCcCHHHHHHHHHHHC----------CCHHHhhHhhHhhHhhcCCC
Confidence 4566643 67899999999999886 67799999999998875543
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.44 E-value=0.00012 Score=53.50 Aligned_cols=42 Identities=33% Similarity=0.492 Sum_probs=33.6
Q ss_pred hhhhhh-hcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhh
Q 018176 2 EGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAI 53 (360)
Q Consensus 2 E~~l~e-~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~ 53 (360)
|+.|.+ ..+..|+.+-.+.||+..+ +.-+||++||||||...
T Consensus 19 e~~f~~~~~~~yp~~~~r~~La~~~~----------L~~~qV~~WFqNrR~r~ 61 (64)
T 1du6_A 19 NEYFYSHLSNPYPSEEAKEELAKKCG----------ITVSQVSNWFGNKRIRY 61 (64)
T ss_dssp HHHHHHTTTSCCCCHHHHHHHHHHHT----------SCHHHHHHHHHHHTTTS
T ss_pred HHHHHHcccCCCCCHHHHHHHHHHHC----------cCHHHHHHHHHHHHHHh
Confidence 455543 4578899999999999887 66799999999998653
No 6
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.44 E-value=0.00022 Score=54.34 Aligned_cols=45 Identities=24% Similarity=0.425 Sum_probs=36.0
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||+.|+. +..|+..-...||.+.+ |.-+||+.||||||...+.+.
T Consensus 22 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 22 LEALFAK--TRYPDIFMREEVALKIN----------LPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHTT----------CCHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHc--cCCCCHHHHHHHHHHHC----------cCHHHhhhhhHHHhHHhhHHH
Confidence 4566654 57899999999999876 567899999999998766544
No 7
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=97.43 E-value=0.00014 Score=52.40 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=34.7
Q ss_pred Chhhhhhh-cCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 1 MEGILQEH-HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 1 ME~~l~e~-~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
||+.|..| .+..|+.+-...||.+.+ +.-+||++||||||...+
T Consensus 13 Le~~f~~~~~~~yp~~~~r~~La~~~g----------l~~~qV~~WFqNrR~r~k 57 (60)
T 1k61_A 13 LESWFAKNIENPYLDTKGLENLMKNTS----------LSRIQIKNWVSNRRRKEK 57 (60)
T ss_dssp HHHHHHHTTTSCCCCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHHHHC----------cCHHHHHHHHHHHHcccc
Confidence 35556553 368899999999999887 566999999999987543
No 8
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=97.43 E-value=0.00015 Score=54.26 Aligned_cols=46 Identities=30% Similarity=0.459 Sum_probs=36.4
Q ss_pred hhhhhh-hcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 2 EGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 2 E~~l~e-~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
|..|.+ ..+..|+.+-...||.+.+ +.-+||++||||||...+.+.
T Consensus 17 e~~f~~~~~~~yP~~~~r~~La~~~~----------L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 17 NEYFYSHLSNPYPSEEAKEELAKKCG----------ITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp HHHHHHTTTSCCCCHHHHHHHHHHHT----------SCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhccCCCcCHHHHHHHHHHHC----------cCHHHHHHHHHHHHhhccccc
Confidence 455543 3678899999999999876 567999999999998766544
No 9
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=97.43 E-value=0.00013 Score=56.29 Aligned_cols=46 Identities=30% Similarity=0.459 Sum_probs=36.6
Q ss_pred hhhhhh-hcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 2 EGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 2 E~~l~e-~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
|+.|.+ ..+..|+.+-...||++.+ +.-+||++||||||...+.+.
T Consensus 17 e~~f~~h~~~~yp~~~~r~~La~~~~----------l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 17 NEYFYSHLSNPYPSEEAKEELAKKCG----------ITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp HHHHHTTTTSCCCCHHHHHHHHHHHT----------SCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHC----------cCHHHHHHHHHHHHHHhhhcc
Confidence 455543 3678899999999999886 567999999999998766544
No 10
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=97.42 E-value=0.00014 Score=53.88 Aligned_cols=44 Identities=23% Similarity=0.474 Sum_probs=35.2
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 56 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k 56 (360)
||+.++. +..|+.+-...||++.+ |.-.||+.||||||...+.+
T Consensus 22 Le~~F~~--~~yp~~~~r~~LA~~l~----------l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 22 LQDFFDA--NAYPKDDEFEQLSNLLN----------LPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHSC----------CCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHc--CCCcCHHHHHHHHHHhC----------CCHHHhHHhhHhhhHHHhhc
Confidence 4666654 57899999999999876 56799999999998875543
No 11
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=97.42 E-value=0.00014 Score=54.97 Aligned_cols=45 Identities=24% Similarity=0.386 Sum_probs=35.6
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||+.++. +..|+.+-.+.||++.+ |.-.||+.||||||...+.+.
T Consensus 32 Le~~f~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 32 LYQKYLL--DSNPTRKMLDHIAHEVG----------LKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHT----------SCHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHh--cCCCCHHHHHHHHHHHC----------cCHHHhHHHhHHHHHhHhhhc
Confidence 4566654 47899999999999887 566899999999998765443
No 12
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.37 E-value=0.00019 Score=53.46 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=34.3
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 55 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~ 55 (360)
||+.++. +..|+..-...||.+.+ +.-+||+.||||||...+.
T Consensus 22 Le~~F~~--~~yp~~~~r~~LA~~l~----------l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 22 LEREYAA--NKFITKDKRRKISAATS----------LSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHTC----------CCHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHh--cCCCCHHHHHHHHHHHC----------CCHHHhhHhhHhHHHHhcc
Confidence 4566643 57899999999999876 6679999999999886543
No 13
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.36 E-value=0.00015 Score=53.97 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=33.1
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
||+.++. +..|+..-...||.+.+ +.-.||+.||||||...+
T Consensus 22 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNrR~k~k 63 (70)
T 2djn_A 22 LQRRFQK--TQYLALPERAELAASLG----------LTQTQVKIWFQNKRSKIK 63 (70)
T ss_dssp HHHHHTT--CSSCCHHHHHHHHHHSS----------CCHHHHHHHHHHHHHTCS
T ss_pred HHHHHcC--CCCCCHHHHHHHHHHhC----------CCHHHHHHHHHHHhhhhc
Confidence 3555543 56899999999999876 567899999999987654
No 14
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.35 E-value=0.00024 Score=53.24 Aligned_cols=46 Identities=26% Similarity=0.366 Sum_probs=36.2
Q ss_pred Chhhhhh-hcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhc
Q 018176 1 MEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 56 (360)
Q Consensus 1 ME~~l~e-~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k 56 (360)
||+.|.+ ..+..|+.+-...||.+.+ ++-+||++||||||...+..
T Consensus 22 Le~~f~~~~~~~yp~~~~r~~La~~~~----------L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 22 MRSWLFQHIGHPYPTEDEKKQIAAQTN----------LTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp HHHHHHHTTTSCCCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHC----------cCHHHHHHHhHHHHhhcccc
Confidence 3555655 3578999999999999876 56799999999998775543
No 15
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.34 E-value=0.00018 Score=53.87 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=35.0
Q ss_pred hhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 2 EGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 2 E~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
|+.++. .+..|+..-...||.+.+ +.-.||+.||||||...+.+.
T Consensus 17 e~~F~~-~~~yp~~~~r~~LA~~l~----------l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 17 EYNFNK-VNKHPDPTTLCLIAAEAG----------LTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp HHHHHS-SCSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHc-cCCCCCHHHHHHHHHHHC----------cCHHHhhHHhHHHHHHHhhhc
Confidence 444432 368899999999999887 567899999999998765544
No 16
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=97.32 E-value=0.0002 Score=51.31 Aligned_cols=42 Identities=31% Similarity=0.383 Sum_probs=33.7
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
||+.++. +..|+..-...||.+.+ +.-.||+.||||||...+
T Consensus 12 Le~~F~~--~~yp~~~~r~~LA~~l~----------l~~~qV~~WFqNRR~k~k 53 (56)
T 3a03_A 12 LERRFLR--QKYLASAERAALAKALR----------MTDAQVKTWFQNRRTKWR 53 (56)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--cCCcCHHHHHHHHHHhC----------cCHHHhhHhhHHhhhhhc
Confidence 3556643 57899999999999887 567899999999987654
No 17
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.31 E-value=0.00019 Score=54.73 Aligned_cols=42 Identities=19% Similarity=0.457 Sum_probs=33.1
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAI 53 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~ 53 (360)
||+.|.. .+..|+..-...||.+.+. +-.||+.||||||..-
T Consensus 15 LE~~F~~-~~~yp~~~~r~~LA~~l~L----------terQVkvWFqNRR~k~ 56 (64)
T 1x2m_A 15 LEKVFTA-ITKHPDEKRLEGLSKQLDW----------DVRSIQRWFRQRRNQE 56 (64)
T ss_dssp HHHHHHT-TCSSCCHHHHHHHHHHHCS----------CHHHHHHHHHHHHHHS
T ss_pred HHHHHHH-cCCCcCHHHHHHHHHHhCC----------CHHHHHHHHHHHHhcc
Confidence 3555543 3588999999999999875 4689999999998754
No 18
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.31 E-value=9.3e-05 Score=56.47 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 11 AMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 11 ~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
..|+.+-.+.||.+.+ |.-+||+.||||||...+...
T Consensus 35 ~yp~~~~r~~La~~lg----------L~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 35 GSVCREKIEAVATELN----------VDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp SHHHHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHhC----------CCHHHhhHhHHHHHHHHhhcc
Confidence 5677888888888776 677999999999997765544
No 19
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=97.31 E-value=0.0002 Score=50.73 Aligned_cols=39 Identities=33% Similarity=0.367 Sum_probs=31.0
Q ss_pred hhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhh
Q 018176 2 EGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYA 52 (360)
Q Consensus 2 E~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~ 52 (360)
|..++ .+..|+......||.+.+. .-.||+.||||||..
T Consensus 18 e~~F~--~~~yp~~~~r~~La~~l~l----------~~~qV~~WFqNrR~k 56 (58)
T 3rkq_A 18 ERRFK--QQRYLSAPERDQLASVLKL----------TSTQVKIWFQNRRYK 56 (58)
T ss_dssp HHHHT--TCSSCCHHHHHHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred HHHHH--HcCCCCHHHHHHHHHHhCc----------CHHHHHHhhHHhhcc
Confidence 45554 3568999999999999874 557999999999864
No 20
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=97.29 E-value=0.0002 Score=54.72 Aligned_cols=43 Identities=26% Similarity=0.444 Sum_probs=34.7
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 55 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~ 55 (360)
||+.|+. +..|+..-...||.+.+ +.-+||+.||||||...+.
T Consensus 33 Le~~F~~--~~yp~~~~r~~LA~~l~----------l~~~qV~~WFqNrR~k~rk 75 (81)
T 1fjl_A 33 LERAFER--TQYPDIYTREELAQRTN----------LTEARIQVWFQNRRARLRK 75 (81)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHHC----------cCHHHHHHHHHHHhhhhhh
Confidence 4566654 57899999999999876 6779999999999877554
No 21
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=97.29 E-value=0.00023 Score=51.48 Aligned_cols=42 Identities=29% Similarity=0.395 Sum_probs=34.0
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
||+.++. +..|+..-...||.+.+ +.-.||+.||||||...+
T Consensus 14 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNrR~k~r 55 (60)
T 3a02_A 14 LEKAFSR--THYPDVFTREELAMKIG----------LTEARIQVWFQNRRAKWR 55 (60)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHT----------SCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHc--CCCcCHHHHHHHHHHHC----------cCHHHHHHHhhhhhhhhH
Confidence 4566654 67899999999999886 556899999999987654
No 22
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=97.28 E-value=0.00025 Score=52.33 Aligned_cols=45 Identities=31% Similarity=0.660 Sum_probs=35.5
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||+.++. +..|+.+-...||++.+ +.-+||+.||||||...+.+.
T Consensus 16 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 16 LENVFRV--NCYPGIDILEDLAQKLN----------LELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp HHHHHTT--CSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHh--cCCCCHHHHHHHHHHHC----------cCHHHhhHhhHhHHHHHhHhc
Confidence 3555543 67899999999999887 667899999999998765444
No 23
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=97.27 E-value=0.00024 Score=52.23 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=34.9
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 56 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k 56 (360)
||+.++. +..|+.+-...||.+.+ +.-.||+.||||||...+.+
T Consensus 18 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 18 LRTCYAA--NPRPDALMKEQLVEMTG----------LSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp HHHHHHH--CSCCCHHHHHHHHHHHT----------SCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHhc--CCCcCHHHHHHHHHHHC----------cCHHHHHHHhHHHHHHHhHH
Confidence 3566654 57899999999999876 56799999999998875543
No 24
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=97.27 E-value=0.00022 Score=51.51 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=32.5
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYA 52 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~ 52 (360)
||..+.. +..|+.+-.+.||...+ +.-.||+.||||||..
T Consensus 20 Le~~f~~--~~yp~~~~r~~La~~~~----------l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 20 LEEVFRR--KQSLNSKEKEEVAKKCG----------ITPLQVRVWFINKRMR 59 (61)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHT----------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHh--CCCcCHHHHHHHHHHHC----------cCHHHHHHHHHHHHhc
Confidence 4566654 47899999999999877 5678999999999864
No 25
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=97.25 E-value=0.00029 Score=51.11 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=33.5
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
||..++. +..|+..-...||.+.+ +.-.||+.||||||...+
T Consensus 18 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNrR~k~k 59 (61)
T 2hdd_A 18 LKREFNE--NRYLTERRRQQLSSELG----------LNEAQIKIWFKNKRAKIK 59 (61)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc--cCCCCHHHHHHHHHHHC----------cCHHHHHHHhhhhccccc
Confidence 3556643 57899999999999887 567999999999987643
No 26
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.25 E-value=0.00039 Score=52.03 Aligned_cols=44 Identities=18% Similarity=0.409 Sum_probs=34.4
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 56 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k 56 (360)
||+.++. +..|+......||.+.+ +.-.||+.||||||...+..
T Consensus 21 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 21 LKVSYLK--NQFPHDSEIIRLMKITG----------LTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHhC----------cCHHHeeeCChhHhHHHHhh
Confidence 3555653 57899999999999986 55689999999998875543
No 27
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=97.24 E-value=0.00031 Score=52.63 Aligned_cols=43 Identities=33% Similarity=0.399 Sum_probs=34.0
Q ss_pred hhhhhh-hcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 2 EGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 2 E~~l~e-~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
|..|.+ +.+..|+.+....||.+.+ ++-+||.+||||||...+
T Consensus 14 ~~~f~~h~~~pyp~~~~r~~La~~~~----------l~~~qV~~WFqNrR~r~k 57 (67)
T 3k2a_A 14 RAWLFQHLTHPYPSEEQKKQLAQDTG----------LTILQVNNWFINARRRIV 57 (67)
T ss_dssp HHHHHHTTTSCCCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHhC----------cCHHHhhhhhHHHHHHHh
Confidence 444443 3678899999999999876 456899999999987654
No 28
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=97.23 E-value=0.00025 Score=52.61 Aligned_cols=44 Identities=25% Similarity=0.450 Sum_probs=34.1
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 56 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k 56 (360)
||+.++. +..|+.+-...||++.+ +.-.||+.||||||...+.+
T Consensus 22 Le~~F~~--~~yp~~~~r~~LA~~l~----------l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 22 LRQYFDI--NNSPSEEQIKEMADKSG----------LPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp HHHHHHH--CSSCCTTHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHH--CCCCCHHHHHHHHHHhC----------CCHHHHHHHhhhhhHHHhhh
Confidence 3555543 57888888999999887 56799999999998876543
No 29
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=97.22 E-value=0.00047 Score=53.46 Aligned_cols=45 Identities=31% Similarity=0.433 Sum_probs=35.6
Q ss_pred hhhhhh-hcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhc
Q 018176 2 EGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 56 (360)
Q Consensus 2 E~~l~e-~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k 56 (360)
|+.|.+ +.+..|+.+-.+.||++.+ ++-+||.+||||||...+..
T Consensus 23 ~~~f~~~~~~pYPs~~~r~~LA~~~g----------Ls~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 23 RDWMYKHRFKAYPSEEEKQMLSEKTN----------LSLLQISNWFINARRRILPD 68 (83)
T ss_dssp HHHHHHTTTTCCCCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHC----------cCHHHhhHHhhhhHhhhcHH
Confidence 444444 4578999999999999876 56899999999998876543
No 30
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=97.20 E-value=0.00032 Score=54.39 Aligned_cols=43 Identities=26% Similarity=0.304 Sum_probs=33.8
Q ss_pred Chhhhhh-hcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhh
Q 018176 1 MEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAI 53 (360)
Q Consensus 1 ME~~l~e-~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~ 53 (360)
||+.|.. ..+..|+.+-.+.||.+.+ +.-+||++||||||...
T Consensus 42 Le~~f~~~~~~~yP~~~~r~~La~~~g----------L~~~qV~~WFqNrR~r~ 85 (87)
T 1mnm_C 42 LESWFAKNIENPYLDTKGLENLMKNTS----------LSRIQIKNWVSNRRRKE 85 (87)
T ss_dssp HHHHHHHTTSSCCCCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHHHHC----------cCHHHHHHHHHHHHhhc
Confidence 3555554 2367899999999999876 66799999999998654
No 31
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=97.19 E-value=0.00035 Score=49.91 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=32.8
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAI 53 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~ 53 (360)
||+.++. +..|+.+-...||.+.+ +.-+||+.||||||...
T Consensus 15 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNrR~k~ 55 (58)
T 1ig7_A 15 LERKFRQ--KQYLSIAERAEFSSSLS----------LTETQVKIWFQNRRAKA 55 (58)
T ss_dssp HHHHHHH--CSCCCHHHHHHHHHHTT----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCcCHHHHHHHHHHHC----------cCHHHhhhhhhHhhhhh
Confidence 3556643 57899999999999876 56689999999998754
No 32
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=97.19 E-value=0.00037 Score=50.66 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=33.4
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
||+.++. +..|+..-...||.+.+ +.-.||+.||||||...+
T Consensus 18 Le~~F~~--~~yp~~~~r~~LA~~l~----------l~~~qV~~WFqNrR~k~k 59 (62)
T 2vi6_A 18 LKDRFQK--QKYLSLQQMQELSSILN----------LSYKQVKTWFQNQRMKCK 59 (62)
T ss_dssp HHHHHHH--CSCCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHTCG
T ss_pred HHHHHHh--CCCCCHHHHHHHHHHhC----------CCHHHhhHHhHHhhcchh
Confidence 3566643 57899999999999887 556899999999987644
No 33
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=97.18 E-value=0.00032 Score=53.24 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=34.3
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 55 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~ 55 (360)
||+.++. +..|+..-...||.+.+ +.-.||+.||||||...+.
T Consensus 24 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNRR~k~kr 66 (77)
T 1nk2_P 24 LERRFRQ--QRYLSAPEREHLASLIR----------LTPTQVKIWFQNHRYKTKR 66 (77)
T ss_dssp HHHHHHH--CSCCCHHHHHHHHHHTT----------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh--cCCCCHHHHHHHHHHhC----------CCHHHHHHHhHHhhcchhh
Confidence 4566654 57899999999999876 5678999999999977553
No 34
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=97.17 E-value=0.0004 Score=50.19 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=33.5
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
||+.++. +..|+..-...||.+.+ +.-+||+.||||||...+
T Consensus 16 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNrR~k~k 57 (60)
T 1jgg_A 16 LEKEFYK--ENYVSRPRRCELAAQLN----------LPESTIKVWFQNRRMKDK 57 (60)
T ss_dssp HHHHHHH--CSCCCHHHHHHHHHHHT----------SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHHC----------cCHHHHHHhhHHHHhHhh
Confidence 3556644 57899999999999886 567999999999987643
No 35
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.16 E-value=0.0004 Score=52.21 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 10 NAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 10 ~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
+..|+..-...||.+.+ +.-.||+.||||||...+.+.
T Consensus 25 ~~yp~~~~r~~LA~~~~----------l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 25 NKHPDPTTLCLIAAEAG----------LTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp TSSCCHHHHHHHHHHHT----------SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHC----------cCHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999887 567899999999998765544
No 36
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=97.16 E-value=0.00041 Score=52.29 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=35.1
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||+.+.. +..|+..-...||.+.+. .-.||+.||||||...+...
T Consensus 22 Le~~F~~--~~yp~~~~r~~LA~~l~l----------~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 22 LEREYAT--NKFITKDKRRRISATTNL----------SERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp HHHHHHH--TSCCCHHHHHHHHHHHTS----------CSHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHhh--CCCcCHHHHHHHHHHHCC----------CHHHHHHHHHHHhHHHHHHh
Confidence 3566654 578999999999998874 56899999999998765443
No 37
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=97.16 E-value=0.00041 Score=56.27 Aligned_cols=55 Identities=29% Similarity=0.437 Sum_probs=40.0
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhc--------CCCCC---CCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFS--------ESPER---KGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs--------~S~~R---aGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||+.++. +..|+..--+.||+..| .++.- .|...|+-.||+.||||||...+.|.
T Consensus 24 LE~~F~~--~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k~ 89 (99)
T 1lfb_A 24 LFQAYER--QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRH 89 (99)
T ss_dssp HHHHHTT--CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHhc--CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHhc
Confidence 3555544 57899999999999955 22333 35555999999999999998654443
No 38
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=97.16 E-value=0.00028 Score=54.72 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=34.1
Q ss_pred Chhhhhhhc--CCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhh
Q 018176 1 MEGILQEHH--NAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAI 53 (360)
Q Consensus 1 ME~~l~e~~--~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~ 53 (360)
||+.++..+ +..|+....+.||.+.+ |.-+||+.||||||...
T Consensus 32 Le~~f~~~~~~~~yp~~~~r~~La~~lg----------L~~~~VkvWFqNrRaK~ 76 (80)
T 1wh5_A 32 MLALAERIGWRIQRQDDEVIQRFCQETG----------VPRQVLKVWLHNNKHSG 76 (80)
T ss_dssp HHHHHHHHTSCCCTTTHHHHHHHHHHSC----------CCHHHHHHHHHHHSSSS
T ss_pred HHHHHHhccCcCCCcCHHHHHHHHHHhC----------CCcccccCCccccCcCC
Confidence 466666544 78899999999999764 55789999999998754
No 39
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.00033 Score=53.18 Aligned_cols=45 Identities=29% Similarity=0.395 Sum_probs=36.0
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||+.++. +..|+.+-...||.+.+ |.-.||+.||||||...+.+.
T Consensus 22 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 22 MKSYFAI--NHNPDAKDLKQLAQKTG----------LTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHTC----------CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHhC----------CCHHHhhHccHHHHHHHHHHH
Confidence 4666653 57899999999999876 667899999999998766544
No 40
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.14 E-value=0.00046 Score=52.53 Aligned_cols=42 Identities=19% Similarity=0.455 Sum_probs=33.2
Q ss_pred hhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 2 EGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 2 E~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
|+.+.+ .+..|+..-...||.+.+ +.-.||+.||||||..-+
T Consensus 24 E~~F~~-~~~yp~~~~r~~LA~~l~----------l~e~qVqvWFqNRR~k~r 65 (72)
T 2cqx_A 24 EKVFVS-VTKYPDEKRLKGLSKQLD----------WSVRKIQCWFRHRRNQDK 65 (72)
T ss_dssp HHHHHH-TCSSCCHHHHHHHHHHTT----------CCHHHHHHHHHHHHHHHS
T ss_pred HHHHHh-cCCCcCHHHHHHHHHHhC----------CChhhcchhhhhcccCCC
Confidence 555533 357899999999999877 567999999999987654
No 41
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=97.13 E-value=0.00049 Score=53.14 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=34.6
Q ss_pred hhhhhh-hcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhc
Q 018176 2 EGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 56 (360)
Q Consensus 2 E~~l~e-~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k 56 (360)
|+.|.+ ..+..|+.+-...||...+ +.-+||++||||||...+..
T Consensus 18 e~~f~~h~~~~yP~~~~r~~La~~~g----------Lt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 18 ESWFAKNIENPYLDTKGLENLMKNTS----------LSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp HHHHHHTSSSCCCCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhCCCCCcCHHHHHHHHHHHC----------CCHHHcccccHHHHcccccc
Confidence 444443 3467899999999999876 66799999999998765543
No 42
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.12 E-value=0.00043 Score=52.89 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=34.3
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||+.++. +..|+..-...||.+.+ +.-+||+.||||||...+.+.
T Consensus 19 LE~~F~~--~~yp~~~~r~~LA~~l~----------Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 19 LERKFSH--QKYLSAPERAHLAKNLK----------LTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp HHHHHHH--CSCCCHHHHHHHHHHTT----------CCHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHhc--CCCCCHHHHHHHHHHhC----------CChhheeecchhhhhhhhhhh
Confidence 3555643 56889999999999876 566999999999988755443
No 43
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.10 E-value=0.00047 Score=52.18 Aligned_cols=44 Identities=25% Similarity=0.546 Sum_probs=34.2
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 56 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k 56 (360)
||+.++. +..|+..-...||.+.+ +.-+||+.||||||...+.+
T Consensus 23 Le~~F~~--~~yp~~~~r~~La~~~~----------l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 23 LKGSFCR--NQFPGQSEVEHLTKVTG----------LSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp HHHHHHH--SSSCCSHHHHHHHHHHC----------CCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHhc--CCCcCHHHHHHHHHHhC----------CChHHhhHHhHHHhHHHHHh
Confidence 3555643 67899999999999876 56689999999998875543
No 44
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.10 E-value=0.00053 Score=52.01 Aligned_cols=45 Identities=24% Similarity=0.477 Sum_probs=35.2
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||+.++. +..|+..-...||.+.+ |.-+||+.||||||...+.+.
T Consensus 22 Le~~F~~--~~yp~~~~r~~LA~~l~----------l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 22 LESSFAQ--NPLPLDEELDRLRSETK----------MTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHC----------CCHHHHHHHHHHHTTHHHHSS
T ss_pred HHHHHhc--cCCCCHHHHHHHHHHhC----------CCHHHhhHhhHHHHHHHHHhh
Confidence 3555543 57899999999999886 566999999999998766544
No 45
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.09 E-value=0.00052 Score=53.92 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=34.8
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||+.++. +..|+..-...||.+.+ |.-+||+.||||||...+.+.
T Consensus 28 Le~~F~~--~~yp~~~~r~~La~~~~----------l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 28 LEDSFLK--SSFPTQAELDRLRVETK----------LSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcc--CCCCCHHHHHHHHHHhC----------CCHHhccHhhHhHHHHHHHHh
Confidence 3555644 57899999999999876 667999999999997654433
No 46
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=97.08 E-value=0.00048 Score=50.33 Aligned_cols=42 Identities=31% Similarity=0.389 Sum_probs=33.5
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
||+.++. +..|+..-...||.+.+ +.-+||+.||||||...+
T Consensus 18 Le~~F~~--~~yp~~~~r~~LA~~l~----------l~~~qV~~WFqNrR~k~k 59 (63)
T 2h1k_A 18 LEKEFLF--NKYISRPRRVELAVMLN----------LTERHIKIWFQNRRMKWK 59 (63)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCcCHHHHHHHHHHhC----------cCHHHhhHHHHhhhhhhh
Confidence 3556643 57899999999999877 567999999999987654
No 47
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=97.07 E-value=0.00044 Score=52.93 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=33.6
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
||+.|.. +..|+..-...||.+.+ |.-.||+.||||||...+
T Consensus 37 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~vWFqNRR~k~k 78 (84)
T 2kt0_A 37 LNDRFQR--QKYLSLQQMQELSNILN----------LSYKQVKTWFQNQRMKSK 78 (84)
T ss_dssp HHHHHHH--SSSCCHHHHHHHHHHTT----------CCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHh--CCCCCHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHH
Confidence 4566643 57899999999999876 567999999999987654
No 48
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.07 E-value=0.0004 Score=53.03 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=33.8
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 56 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k 56 (360)
||+.|+. +..|+..-...||.+.+ |.-.||+.||||||...+.+
T Consensus 22 Le~~F~~--~~yp~~~~r~~LA~~l~----------l~~~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 22 LEKEFER--THYPDVFARERLAAKID----------LPEARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp HHHHHTT--CSSCCHHHHHHHHHHTT----------CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--cCCCCHHHHHHHHHHhC----------CCHHHhhHHHHHHHHHHHHH
Confidence 3555543 56899999999999876 56789999999998775443
No 49
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=97.06 E-value=0.00044 Score=51.35 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=34.6
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||+.++. +..|+..-...||.+.+ +.-.||+.||||||...+...
T Consensus 17 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 17 LEQHFLQ--GRYLTAPRLADLSAKLA----------LGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp HHHHHTT--CSSCCHHHHHHHHHHHT----------SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCcCHHHHHHHHHHhC----------cCHHHhhHhhHHHHHHHHHHh
Confidence 3555543 56899999999999877 566899999999988755443
No 50
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.03 E-value=0.00053 Score=51.19 Aligned_cols=40 Identities=25% Similarity=0.416 Sum_probs=31.0
Q ss_pred hhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhh
Q 018176 2 EGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAI 53 (360)
Q Consensus 2 E~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~ 53 (360)
|+.+. .+..|+..-...||++.+ +.-+||+.||||||...
T Consensus 19 e~~F~--~~~yp~~~~r~~LA~~l~----------L~e~qVqvWFqNRRak~ 58 (64)
T 2e19_A 19 KAYYA--LNAQPSAEELSKIADSVN----------LPLDVVKKWFEKMQAGQ 58 (64)
T ss_dssp HHHHT--TCSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHTC
T ss_pred HHHHh--cCCCcCHHHHHHHHHHhC----------cChhhcCcchhcccCCC
Confidence 45553 357788888888998876 66799999999997743
No 51
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=97.01 E-value=0.0006 Score=51.71 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=33.5
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
||+.++. +..|+..-...||.+.+ +.-.||+.||||||...+
T Consensus 28 Le~~F~~--~~yp~~~~r~~LA~~l~----------l~~~qV~vWFqNRR~k~k 69 (77)
T 1puf_A 28 LEKEFLF--NMYLTRDRRYEVARLLN----------LTERQVKIWFQNRRMKMK 69 (77)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--cCCCCHHHHHHHHHHHC----------cCHHHHHHHHHHHHHHHH
Confidence 4566643 57899999999999887 567899999999987654
No 52
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=97.01 E-value=0.00063 Score=52.31 Aligned_cols=42 Identities=29% Similarity=0.514 Sum_probs=33.4
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
||+.++. +..|+..-...||.+.+ +.-.||+.||||||...+
T Consensus 35 Le~~F~~--~~yp~~~~r~~LA~~l~----------l~~~qV~vWFqNRR~k~k 76 (81)
T 1b8i_A 35 LEKEFHT--NHYLTRRRRIEMAHALS----------LTERQIKIWFQNRRMKLK 76 (81)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCCHHHHHHHHHHhC----------CCHHHHHHHhHHhhhhhh
Confidence 3555644 57899999999999877 567899999999987654
No 53
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=96.99 E-value=0.0002 Score=53.07 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 10 NAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 10 ~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
+..|+..-...||.+.+ +.-.||+.||||||...+.+.
T Consensus 25 ~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 25 NRYPDMSTREEIAVWTN----------LTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCCTTTTTHHHHHTT----------SCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHC----------cCHHHHHHHHHHHhHHHHHHh
Confidence 45566666666666655 677999999999998765443
No 54
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=96.98 E-value=0.00064 Score=50.59 Aligned_cols=45 Identities=29% Similarity=0.422 Sum_probs=34.8
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||+.++. +..|+......||...+ +.-.||+.||||||...+.+.
T Consensus 24 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 24 LEKVFQK--THYPDVYAREQLAMRTD----------LTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHh--cCCCCHHHHHHHHHHhC----------CCHHHHHHHhHHHHHHHHHHH
Confidence 3555643 56899999999999986 456899999999988765443
No 55
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=96.96 E-value=0.00059 Score=50.76 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=34.2
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||..++. +..|+..-...||.+.+ +.-.||+.||||||...+...
T Consensus 17 Le~~F~~--~~yp~~~~r~~La~~l~----------l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 17 LEKEFHF--NRYLTRRRRIEIAHALS----------LTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp HHHHHHH--CSSCCTTHHHHHHHHHT----------CCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcc--CCCCCHHHHHHHHHHHC----------cCHhhhhHHhHHHHhHHhHhc
Confidence 3555543 56788888899998877 566899999999998765443
No 56
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=96.96 E-value=0.00054 Score=52.96 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=30.0
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 9 HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 9 ~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
.+..|+..-.+.||.+.+. .-.||+.||||||+..+
T Consensus 25 ~~~YPs~~er~eLA~~tgL----------t~~qVkvWFqNRR~k~K 60 (66)
T 3nau_A 25 QSQFPDDAEVYRLIEVTGL----------ARSEIKKWFSDHRYRCQ 60 (66)
T ss_dssp GGGSCCHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhCc----------CHHHhhHhcccchhhhh
Confidence 3578899999999988765 46899999999998765
No 57
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=96.95 E-value=0.00059 Score=53.97 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=34.3
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 56 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k 56 (360)
||+.++. +..|+......||.+.+ +.-.||+.||||||...+..
T Consensus 40 Le~~F~~--~~yp~~~~r~~LA~~l~----------L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 40 LKSAFVR--TQWPSPEEYDKLAKESG----------LARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp HHHHHHH--CSSCCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHhC----------CCHHHeeecchhhhhHhhhh
Confidence 3555653 57899999999999886 45689999999999876543
No 58
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=96.95 E-value=0.00073 Score=50.14 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=35.1
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||..+.. +..|+..-...||.+.+ +.-.||+.||||||...+...
T Consensus 17 Le~~F~~--~~yp~~~~r~~LA~~l~----------l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 17 LERRFKQ--QKYLSAPEREHLASMIH----------LTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp HHHHHHH--SSSCCHHHHHHHHHHHT----------SCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHh--CCCCCHHHHHHHHHHhC----------CCHHHhHHHhHHHhhhhhhhh
Confidence 3556643 57899999999999887 567899999999988765443
No 59
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=96.92 E-value=0.00068 Score=53.57 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=34.8
Q ss_pred ChhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 1 MEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 1 ME~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
||+.++. +..|+..-...||.+.+ +.-+||+.||||||...+...
T Consensus 32 Le~~F~~--~~yp~~~~r~~LA~~l~----------L~~~qV~vWFqNRR~k~kr~~ 76 (93)
T 3a01_A 32 LEKRFHK--QKYLASAERAALARGLK----------MTDAQVKTWFQNRRTKWRRQT 76 (93)
T ss_dssp HHHHHHH--CSCCCHHHHHHHHHTTT----------CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc--CCCcCHHHHHHHHHHhC----------CChhhcccccHhhhhhhhhhh
Confidence 3556644 56788888899998766 667999999999998766554
No 60
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=96.88 E-value=0.0008 Score=52.23 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=32.0
Q ss_pred hhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 2 EGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 2 E~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
|+.++ .+..|+..-...||++.+ +.-.||+.||||||...+
T Consensus 44 e~~F~--~~~yp~~~~r~~La~~l~----------l~~~qV~vWFqNRR~k~k 84 (88)
T 2r5y_A 44 EKEFH--FNRYLTRRRRIEIAHALS----------LTERQIKIWFQNRRMKWK 84 (88)
T ss_dssp HHHHT--TCSSCCHHHHHHHHHHTT----------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHh--ccCCCCHHHHHHHHHHhC----------cCHHHhhHHhHHHHHHhH
Confidence 45554 356788888899998876 566899999999987654
No 61
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=96.87 E-value=0.00073 Score=53.40 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=33.5
Q ss_pred hhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhc
Q 018176 2 EGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 56 (360)
Q Consensus 2 E~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k 56 (360)
|+.++. +..|+..-...||.+.+ +.-.||+.||||||...+.+
T Consensus 50 e~~F~~--~~yp~~~~r~~LA~~l~----------l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 50 EKEFHF--NKYLSRARRVEIAATLE----------LNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp HHHHTT--CSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc--cCCCCHHHHHHHHHHhC----------CCHHHhHHHHHHHhHHHhHH
Confidence 455543 56889999999999887 56789999999999876543
No 62
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.64 E-value=0.0011 Score=54.87 Aligned_cols=54 Identities=31% Similarity=0.465 Sum_probs=40.3
Q ss_pred hhhhhhhcCCCCCHHHHHHHHHHhcC--------CCCC---CCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 2 EGILQEHHNAMPSREILVALAEKFSE--------SPER---KGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 2 E~~l~e~~~~~p~r~~~q~LAe~Fs~--------S~~R---aGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
|+.|+. +..|+.+-...||+.-|. ++.- -|+-.|+-.+|++||||||...+.+.
T Consensus 22 e~~F~~--~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr~~ 86 (102)
T 2da6_A 22 YQAYDR--QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAFRQ 86 (102)
T ss_dssp HHHHTT--CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcC--CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHHhh
Confidence 455543 468999999999999962 2222 25667889999999999998866554
No 63
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.46 E-value=0.0028 Score=49.77 Aligned_cols=44 Identities=18% Similarity=0.377 Sum_probs=34.4
Q ss_pred hhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 2 EGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 2 E~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
|+.+. .+..|+.+-.+.||+.-+ +.-+||+.||||||+..+...
T Consensus 19 e~~F~--~~~YPs~~er~~LA~~tg----------Lte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 19 KSFFL--QCQWARREDYQKLEQITG----------LPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp HHHHH--HCSSCCHHHHHHHHHHTC----------CCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHH--HCCCCCHHHHHHHHHHHC----------cCHHHhhHHhHhhHHHHHHHH
Confidence 44444 458899999999999865 557899999999998876443
No 64
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=96.43 E-value=0.0015 Score=50.82 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhh
Q 018176 10 NAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAI 53 (360)
Q Consensus 10 ~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~ 53 (360)
+..|+.+..+.||.+.+ |.-.||+.||||||...
T Consensus 43 ~~yp~~~~r~~La~~lg----------L~e~qVkvWFqNrR~k~ 76 (80)
T 1wh7_A 43 IQKHDDVAVEQFCAETG----------VRRQVLKIWMHNNKNSG 76 (80)
T ss_dssp CCSSTTHHHHHHHHHSC----------CCHHHHHHHHHTTSCCS
T ss_pred CCCCCHHHHHHHHHHhC----------cCcCcccccccccccCC
Confidence 67899999999999765 45689999999998754
No 65
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.41 E-value=0.0058 Score=48.89 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=33.2
Q ss_pred hhhhhhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 2 EGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 2 E~~l~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
|+.+. .+..|+..-...||...+ ++-.||+.||||||...+.+.
T Consensus 27 e~~F~--~~~yp~~~~r~~LA~~lg----------Lte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 27 QASFL--NSSVLTDEELNRLRAQTK----------LTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp HHHHH--HCSSCCHHHHHHHHHHTC----------CCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHH--hcCCCCHHHHHHHHHHhC----------cChHHCeecccccchHHHHHH
Confidence 44443 357899999999998765 557999999999997765443
No 66
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=96.15 E-value=0.0041 Score=50.26 Aligned_cols=40 Identities=30% Similarity=0.437 Sum_probs=32.2
Q ss_pred hhhcCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhh
Q 018176 6 QEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 55 (360)
Q Consensus 6 ~e~~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~ 55 (360)
+...+..|+++--+.||++-+ ++-+||.+||||||...+.
T Consensus 26 ~h~~npYPs~~ek~~LA~~tg----------Lt~~QV~~WF~NrR~R~kk 65 (89)
T 2lk2_A 26 EHRYNAYPSEQEKALLSQQTH----------LSTLQVCNWFINARRRLLP 65 (89)
T ss_dssp HTSGGGSCCHHHHHHHHHHSS----------SCHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCCCHHHHHHHHHHHC----------cCHHHHHHHHHHHHHHhhh
Confidence 344678899999999998654 6789999999999887653
No 67
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=96.05 E-value=0.043 Score=46.85 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=70.5
Q ss_pred ceeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccccccccCCCcccccccccccCCceEEEeee
Q 018176 121 FMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQRSLPCEASECVAVLPGDLILCFQE 200 (360)
Q Consensus 121 ~lEFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR~RSiPlE~sEC~~V~pGdlVcCf~e 200 (360)
+|.-|-+. ++||||-.-+ .. + ++.++.|+|.+- -+..++|.+. .+|+..-| ++. ..+..||-|-+|..
T Consensus 5 ~~~VEV~~-~~G~~y~a~V-~~---v--~~d~~~V~f~n~-w~~~~~vp~~-~vRlpP~~--~~~-~~f~~gd~VEV~~~ 72 (128)
T 3h8z_A 5 GLPVEVRG-SNGAFYKGFV-KD---V--HEDSVTIFFENN-WQSERQIPFG-DVRLPPPA--DYN-KEITEGDEVEVYSR 72 (128)
T ss_dssp TCEEEEEC-TTSCEEEEEE-EE---E--CSSEEEEEETTC-TTCCEEEEGG-GEECCCCC-------CCCTTCEEEEEEC
T ss_pred ccEEEEec-CCCCEEEEEE-EE---E--eCCcEEEEEccc-cCcceEechh-hEEcCCCc--ccc-cCCCCCCEEEEEec
Confidence 45556665 6799998443 22 2 567899999541 1224455554 88886555 334 47899999999987
Q ss_pred cCC--cceEeeEEEeeeeecccCCCCcceEEEEEEecC--CccccccCcceeec
Q 018176 201 GKD--QALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHD--QSEEIVPLRKVCRR 250 (360)
Q Consensus 201 g~d--~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hd--psee~V~l~kvC~r 250 (360)
.+| -.-||=|.|..++ | +.+.|.|+-= +..|+|++++|=..
T Consensus 73 ~~d~ep~gWw~a~I~~~k-------g--~f~~V~y~~~~~~~~EiV~~~rlR~~ 117 (128)
T 3h8z_A 73 ANEQEPCGWWLARVRMMK-------G--DFYVIEYAACDATYNEIVTLERLRPV 117 (128)
T ss_dssp C---CCCEEEEEEEEEEE-------T--TEEEEEETTC----CEEECGGGEEEC
T ss_pred CCCCCcCccEEEEEEEee-------C--CEEEEEEcCCCCCcceEEehhheEeC
Confidence 543 3459999999887 2 4777886652 33588998887444
No 68
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=95.64 E-value=0.0087 Score=51.00 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhhh
Q 018176 10 NAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 55 (360)
Q Consensus 10 ~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~~ 55 (360)
+..|+.+....||++.+ +.-.||+.||||||...+.
T Consensus 119 ~~yp~~~~r~~la~~l~----------L~~~qV~~WFqNrR~r~k~ 154 (164)
T 2d5v_A 119 NKRPSKELQITISQQLG----------LELSTVSNFFMNARRRSLD 154 (164)
T ss_dssp CSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHTSSC
T ss_pred CCCCCHHHHHHHHHHHC----------cCHHHhhhcChhhhccccc
Confidence 45677777777777665 6789999999999876543
No 69
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.014 Score=47.29 Aligned_cols=45 Identities=13% Similarity=0.319 Sum_probs=35.9
Q ss_pred CCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccccccccC
Q 018176 130 RDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQR 177 (360)
Q Consensus 130 ~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR~R 177 (360)
+||-||...+. +-| ...|+.+.+|||.||...-||||... |++..
T Consensus 34 ~~~~~y~AkIl-~ir-~~~~~~~YyVHY~g~NkRlDEWV~~~-rl~l~ 78 (92)
T 2ro0_A 34 KNDEERLAEIL-SIN-TRKAPPKFYVHYVNYNKRLDEWITTD-RINLD 78 (92)
T ss_dssp ETTEEEEEEEE-EEE-CSSSSCEEEEEETTSCTTSCEEEEGG-GEETT
T ss_pred ECCEEEEEEEE-EEE-EcCCCcEEEEEeCCcCcccccccCHh-Hcccc
Confidence 39999998875 433 24678999999999999999999986 55543
No 70
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=95.42 E-value=0.016 Score=45.74 Aligned_cols=35 Identities=23% Similarity=0.581 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 10 NAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 10 ~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
+..|+.+..+.||.+-. +...+|+-|||||||-.+
T Consensus 30 ~~yPd~~~r~~La~~tG----------L~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 30 GLYPDQEAIHTLSAQLD----------LPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CSCCCHHHHHHHHHHSC----------CCHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHhC----------CCHHHHHHhhccceeeec
Confidence 57899999999998765 456899999999999753
No 71
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=95.23 E-value=0.056 Score=50.08 Aligned_cols=92 Identities=17% Similarity=0.357 Sum_probs=63.6
Q ss_pred EeeccCCCceeehhhhhhccccC-----CCCCeEEEEecCCCcCcccccccccccccCCCcccccccccccCCceEEEee
Q 018176 125 EAKSARDGAWYDVSAFLAQRNFD-----TADPEVQVRFAGFGAEEDEWVNIKRHVRQRSLPCEASECVAVLPGDLILCFQ 199 (360)
Q Consensus 125 EAkSa~DgAWYDV~~fL~~r~l~-----tGe~evrVrF~gFg~EeDEWvnvk~rvR~RSiPlE~sEC~~V~pGdlVcCf~ 199 (360)
.|+-...||||...+.-=.+... +-+.-+.|.|.+|.+..---+.++ .+|+|+.. ...=..|.+|..|.+.-
T Consensus 10 d~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~-~irprar~--~~~~~~l~~g~~vm~ny 86 (226)
T 3ask_A 10 DARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSR-DVRARART--IIKWQDLEVGQVVMLNY 86 (226)
T ss_dssp EEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGG-GEEECCCC--BCCGGGCCTTCEEEEEE
T ss_pred EeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccc-cccccccc--cCCccccccCcEEEEec
Confidence 46666689999876654444221 234667899998866654444444 57777755 45556899999999643
Q ss_pred ---ecCCcceEeeEEEeeeeecc
Q 018176 200 ---EGKDQALYFDAHVLDAQRRR 219 (360)
Q Consensus 200 ---eg~d~alyyDA~V~~VqRr~ 219 (360)
.-++...||||+|..+...+
T Consensus 87 n~~~~~~~G~~y~~~I~~~~~~r 109 (226)
T 3ask_A 87 NPDNPKERGFWYDAEISRKRETR 109 (226)
T ss_dssp CTTSTTSCCEEEEEEEEEEEECS
T ss_pred ccCCccccCceeehhhhhhhhcc
Confidence 45568899999999988654
No 72
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.15 E-value=0.011 Score=47.52 Aligned_cols=47 Identities=15% Similarity=0.333 Sum_probs=36.3
Q ss_pred CCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccccccccCCC
Q 018176 130 RDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQRSL 179 (360)
Q Consensus 130 ~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR~RSi 179 (360)
+|+-||...+. +-+ ...|+.+.+|||.||...-||||... |++...+
T Consensus 25 ~~~~~y~AkIl-~i~-~~~~~~~YyVHY~g~NkRlDEWV~~~-rl~~~~~ 71 (87)
T 2eko_A 25 NEDEWPLAEIL-SVK-DISGRKLFYVHYIDFNRRLDEWVTHE-RLDLKKI 71 (87)
T ss_dssp CCEECCEEEEE-EEC-CSSSCCCEEEEECSSCSCCCEEECTT-TBCGGGC
T ss_pred CCCeEEEEEEE-EEE-EcCCCcEEEEEeCCCCcccccccCHh-Hcccccc
Confidence 47889987764 433 24578899999999999999999986 6665543
No 73
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=95.05 E-value=0.021 Score=44.51 Aligned_cols=56 Identities=25% Similarity=0.506 Sum_probs=38.6
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCccc----ccccccccccCCCcccccccc
Q 018176 125 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDE----WVNIKRHVRQRSLPCEASECV 187 (360)
Q Consensus 125 EAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDE----Wvnvk~rvR~RSiPlE~sEC~ 187 (360)
-|+-+.||.||-+.+.-- .++..+.|.|..||+.+.- ...+...| .++|.|+.+|.
T Consensus 35 ~a~~~~d~~wyRA~I~~~-----~~~~~~~V~fvDyGn~e~v~~~~lr~l~~~f--~~lP~qA~~Cs 94 (94)
T 3fdr_A 35 AAPLPTNGSWYRARVLGT-----LENGNLDLYFVDFGDNGDCPLKDLRALRSDF--LSLPFQAIECS 94 (94)
T ss_dssp EEEETTTTEEEEEEEEEE-----CTTSCEEEEETTTCCEEEECGGGCEECCGGG--GCSCCCCCCC-
T ss_pred EEEECCCCeEEEEEEEEE-----CCCCeEEEEEEcCCCeEEEEHHHhhhcCHHH--hcCCcceEEeC
Confidence 455567999999887522 1345799999999997532 22223444 48999999995
No 74
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=94.92 E-value=0.059 Score=43.04 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=38.1
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCccccccccc-ccccC
Q 018176 122 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKR-HVRQR 177 (360)
Q Consensus 122 lEFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~-rvR~R 177 (360)
|-+||.. ..+-||.+-+.. ....+..|+|||.|+....|||+++.. ++|+.
T Consensus 24 mkLEA~D-~~~~~~~a~i~~----v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I~P~ 75 (88)
T 2eqm_A 24 ARLEALD-YLQKWYPSRIEK----IDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPL 75 (88)
T ss_dssp CEEEEEC-TTSCEEEEEEEE----EETTTTEEEEEESSSTTTEEEEEETTSCCEECC
T ss_pred CEEEEEc-CCCCeeEEEEEE----EeccCCEEEEEECCCCCcccEEeeCCCCcEecc
Confidence 7788886 446899776552 223346899999999999999999863 55543
No 75
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.051 Score=44.45 Aligned_cols=44 Identities=14% Similarity=0.328 Sum_probs=35.6
Q ss_pred CCCceeehhhhhhccccCCCCCeEEEEecCCCcCccccccccccccc
Q 018176 130 RDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQ 176 (360)
Q Consensus 130 ~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR~ 176 (360)
+||-||...+. +-| ...|+.+.+|+|.||...-||||... |+..
T Consensus 36 ~~~~~yeAeIl-~ir-~~~g~~~YYVHY~g~NkRlDEWV~~~-RI~l 79 (94)
T 2rnz_A 36 KNDEERLAEIL-SIN-TRKAPPKFYVHYVNYNKRLDEWITTD-RINL 79 (94)
T ss_dssp CSSCEEEEEEE-EEE-CSSSSCEEEEECTTSCSTTCEEEETT-TBCS
T ss_pred ECCEEEEEEEE-EEE-EcCCCcEEEEEeCCcCcccccccCHH-Hccc
Confidence 59999998875 433 24688999999999999999999986 5543
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.40 E-value=0.057 Score=42.50 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=29.7
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 018176 9 HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 9 ~~~~p~r~~~q~LAe~Fs~S~~RaGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
.|.-|+.+-++.||++-+ +.-+.|+-||||||.-+.
T Consensus 26 ~n~~Ps~eei~~LA~~lg----------L~~~VVrVWFqNrRa~~~ 61 (71)
T 2da7_A 26 MNMEPNSDELLKISIAVG----------LPQEFVKEWFEQRKVYQY 61 (71)
T ss_dssp HCSSCCHHHHHHHHHHHT----------CCHHHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHhC----------CCHHHHHHHHhhcccccc
Confidence 467899999999999866 456889999999987543
No 77
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=93.78 E-value=0.039 Score=45.19 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=33.5
Q ss_pred CCceeehhhhhhccccC--CCCCeEEEEecCCCcCcccccccccccc
Q 018176 131 DGAWYDVSAFLAQRNFD--TADPEVQVRFAGFGAEEDEWVNIKRHVR 175 (360)
Q Consensus 131 DgAWYDV~~fL~~r~l~--tGe~evrVrF~gFg~EeDEWvnvk~rvR 175 (360)
||-||...+. +-|.-. .|..+.+|||.||...-||||..- |++
T Consensus 27 dg~~yeAeIl-~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~-RL~ 71 (92)
T 2bud_A 27 DGTVHRGQVL-QSRTTENAAAPDEYYVHYVGLNRRLDGWVGRH-RIS 71 (92)
T ss_dssp TSCEEEEEEE-EEECTTTCSSCCEEEEECSSSCTTTCEEEETT-TEE
T ss_pred CCCEEEEEEE-EEeeccCCCCCcEEEEEeCCcccccccccCHH-Hhc
Confidence 8999998874 444333 267899999999999999999874 443
No 78
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=93.55 E-value=0.18 Score=37.47 Aligned_cols=52 Identities=12% Similarity=0.221 Sum_probs=38.6
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCccee
Q 018176 188 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVC 248 (360)
Q Consensus 188 ~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC 248 (360)
..++||.+++.- . +|.+||.|+|.+|.... -.+.|.|..=.+.|.|++.+|-
T Consensus 8 ~~~vGd~c~A~~-s-~Dg~wYrA~I~~v~~~~-------~~~~V~fvdYGn~e~V~~~~Lr 59 (64)
T 4a4f_A 8 SWKVGDKCMAVW-S-EDGQCYEAEIEEIDEEN-------GTAAITFAGYGNAEVTPLLNLK 59 (64)
T ss_dssp CCCTTCEEEEEC-T-TTSSEEEEEEEEEETTT-------TEEEEEETTTTEEEEEEGGGEE
T ss_pred CCCCCCEEEEEE-C-CCCCEEEEEEEEEcCCC-------CEEEEEEEecCCEEEEeHHHcE
Confidence 568999777533 2 35579999999998421 1568999887888889888874
No 79
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=93.40 E-value=0.033 Score=47.45 Aligned_cols=46 Identities=24% Similarity=0.489 Sum_probs=34.6
Q ss_pred CCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccccccccC
Q 018176 131 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQR 177 (360)
Q Consensus 131 DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR~R 177 (360)
|+-||...+.---..-..|..+++|||.||...-||||..- |++..
T Consensus 25 d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~-ri~~~ 70 (133)
T 1wgs_A 25 DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKN-RLALT 70 (133)
T ss_dssp TTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTT-TSCCT
T ss_pred CCCEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChh-hcccc
Confidence 89999988753211113477899999999999999999985 56543
No 80
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=93.35 E-value=0.17 Score=42.55 Aligned_cols=69 Identities=16% Similarity=0.308 Sum_probs=44.8
Q ss_pred cccCCceEEEeeec-CCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCcc--ccccCcceeeccccchHHH
Q 018176 188 AVLPGDLILCFQEG-KDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKVCRRPETDYRLQ 258 (360)
Q Consensus 188 ~V~pGdlVcCf~eg-~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpse--e~V~l~kvC~rP~~Dp~L~ 258 (360)
+...|+.||||+-. ...-+.|||.|++|....=....-.-.++|-|.-=+.. |-|+-.+| +.-+|-.++
T Consensus 19 ~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drl--lk~neeN~~ 90 (110)
T 3oa6_A 19 KFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHV--LRDTDENRR 90 (110)
T ss_dssp CSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGE--EECCHHHHH
T ss_pred ccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhh--hcCCHHHHH
Confidence 46799999999844 34668899999999865532222334688888765544 55666655 334444443
No 81
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=92.90 E-value=0.038 Score=43.14 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=35.3
Q ss_pred CCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccccccccCCC
Q 018176 130 RDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQRSL 179 (360)
Q Consensus 130 ~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR~RSi 179 (360)
+++-||...+. +-+ ...|+.+..|+|.||...-||||... |++..+.
T Consensus 20 k~~~~y~AkIl-~i~-~~~~~~~Y~VHY~gwnkr~DEWV~~~-ri~~~~~ 66 (76)
T 2lcc_A 20 KTQKIYEASIK-STE-IDDGEVLYLVHYYGWNVRYDEWVKAD-RIIWPLD 66 (76)
T ss_dssp TEEEEEEEEEE-EEE-EETTEEEEEEEETTSCCSSCEEEEGG-GEECSSC
T ss_pred CCCCEEEEEEE-EEE-ccCCceEEEEEeCCcCCCceEecChh-hcccccc
Confidence 45789988773 433 34577789999999999999999976 5554443
No 82
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=92.85 E-value=0.25 Score=38.24 Aligned_cols=64 Identities=17% Similarity=0.108 Sum_probs=41.6
Q ss_pred ccccccc----ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcceeeccc
Q 018176 180 PCEASEC----VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPE 252 (360)
Q Consensus 180 PlE~sEC----~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC~rP~ 252 (360)
+||++.+ ...++||++++.- . +|..||-|+|++|.... =.+.|.|..=.+.+.|++.+|.-.|.
T Consensus 5 ~l~~~~~~e~~~~~kvGd~C~A~y-s-~Dg~wYRA~I~~i~~~~-------~~~~V~fvDYGN~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 5 ILESSIPMEYAKMWKPGDECFALY-W-EDNKFYRAEVEALHSSG-------MTAVVKFIDYGNYEEVLLSNIKPIQT 72 (77)
T ss_dssp ------CHHHHTTCCTTCEEEEEE-T-TTTEEEEEEEEEECTTS-------SEEEEEETTTCCEEEEEGGGEECC--
T ss_pred ccccccchhhcCCCCcCCEEEEEE-C-CCCCEEEEEEEEEeCCC-------CEEEEEEEcCCCeEEEeHHHeEECCh
Confidence 4555555 4589999777533 2 35689999999986431 24578888877788899998876654
No 83
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=92.47 E-value=0.24 Score=35.97 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=39.2
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcceeecc
Q 018176 188 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRP 251 (360)
Q Consensus 188 ~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC~rP 251 (360)
..++||++++.- . ++.+||.|+|++|.... =.+.|+|..=.+.|.|++.+|.-.|
T Consensus 3 ~~~~G~~c~A~~-s-~Dg~wYrA~I~~i~~~~-------~~~~V~f~DYGn~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 3 QWKVGDKCSAIW-S-EDGCIYPATIASIDFKR-------ETCVVVYTGYGNREEQNLSDLLSPI 57 (59)
T ss_dssp CCCTTCEEEEEC-T-TTSCEEEEEEEEEETTT-------TEEEEEETTTTEEEEEEGGGCBCTT
T ss_pred cCCcCCEEEEEE-C-CCCCEEEEEEEEEcCCC-------CEEEEEEEcCCCEEEEcHHHeeCCC
Confidence 578999766533 2 35589999999995421 2578999886777888888775443
No 84
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=92.41 E-value=0.051 Score=47.04 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHhcCCCCC--------CCCcccchhhHHHHHhhhhhhhhhcc
Q 018176 12 MPSREILVALAEKFSESPER--------KGKIMVQMKQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 12 ~p~r~~~q~LAe~Fs~S~~R--------aGK~~Vq~kQV~~WFQnrr~~~~~k~ 57 (360)
.++.+-++.|=..|...+-- +-+.-+.-+||+.||||||...+...
T Consensus 105 ~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 105 SIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred eccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 35666777788888765432 24556889999999999998765443
No 85
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=92.37 E-value=0.086 Score=42.16 Aligned_cols=55 Identities=25% Similarity=0.558 Sum_probs=38.8
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCccccccc------ccccccCCCccccccccc
Q 018176 125 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI------KRHVRQRSLPCEASECVA 188 (360)
Q Consensus 125 EAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnv------k~rvR~RSiPlE~sEC~~ 188 (360)
-|+-+.||.||-+.+.-- . ++..+.|.|..||+.+. ++. ...| .++|.|+.+|..
T Consensus 40 ~a~~~~d~~wyRA~V~~~---~--~~~~~~V~fvDyGn~e~--v~~~~Lr~l~~~f--~~lP~qA~~c~L 100 (110)
T 2diq_A 40 AAPLPTNGSWYRARVLGT---L--ENGNLDLYFVDFGDNGD--CPLKDLRALRSDF--LSLPFQAIECSL 100 (110)
T ss_dssp EECCTTTCSCEEEEECCC---C--SSSCEEEEETTTCCEEE--ECGGGCEECCHHH--HSSCCSSCCSCS
T ss_pred EEEECCCCeEEEEEEEEE---C--CCCeEEEEEEeCCCeEE--EehHHhhcCcHHH--hCCCcceEEEEE
Confidence 466667999999886521 1 23579999999999853 333 2233 478999999974
No 86
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=92.23 E-value=0.081 Score=41.58 Aligned_cols=48 Identities=25% Similarity=0.536 Sum_probs=40.7
Q ss_pred ceeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 121 FMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 121 ~lEFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
.+.|+.- ++-+|.|...|.+|....|..+++|+..||+.+++.|-+..
T Consensus 13 ~~~~~~~---~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~ 60 (81)
T 4hae_A 13 NLYFQGA---SGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEH 60 (81)
T ss_dssp CEEEECT---TSCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGG
T ss_pred cccccCC---CCCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHH
Confidence 3556653 56799999999999888899999999999999999997654
No 87
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=92.05 E-value=0.25 Score=39.55 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=40.1
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcceeec
Q 018176 188 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRR 250 (360)
Q Consensus 188 ~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC~r 250 (360)
..++||++|+.- .+|.+||.|+|.+|... . =.+.|.|..=.+.|.|++.+|.-.
T Consensus 10 ~~kvGd~C~A~y--s~Dg~wYrA~I~~i~~~---~----~~~~V~fiDYGN~E~V~~~~Lrp~ 63 (88)
T 1g5v_A 10 QWKVGDKCSAIW--SEDGCIYPATIASIDFK---R----ETCVVVYTGYGNREEQNLSDLLSP 63 (88)
T ss_dssp CCCSSCEEEEEC--TTTCCEEEEEEEEEETT---T----TEEEEEETTTCCEEEEEGGGCBCC
T ss_pred CCCCCCEEEEEE--CCCCCEEEEEEEEecCC---C----CEEEEEEecCCCEEEEcHHHcccC
Confidence 578999777633 33668999999999542 1 246888988888888999887543
No 88
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=92.05 E-value=0.055 Score=44.74 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=32.5
Q ss_pred CCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccccccc
Q 018176 131 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVR 175 (360)
Q Consensus 131 DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR 175 (360)
++-||+..+.-- + ...|+.+.+|+|.||...-||||... |++
T Consensus 34 ~~~~YeAkIl~v-~-~~~~~~~Y~VHY~GwNkR~DEWV~~~-Rl~ 75 (102)
T 2f5k_A 34 GPLLYEAKCVKV-A-IKDKQVKYFIHYSGWNKNWDEWVPES-RVL 75 (102)
T ss_dssp SSSEEEEEEEEE-E-EETTEEEEEEEETTSCGGGCEEEEGG-GEE
T ss_pred CCEEEEEEEEEE-E-EcCCCcEEEEEeCCcCCCceeeccHh-hcc
Confidence 789998876532 2 24577899999999999999999953 444
No 89
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=91.94 E-value=0.016 Score=40.39 Aligned_cols=18 Identities=39% Similarity=0.758 Sum_probs=14.3
Q ss_pred hhHHHHHhhhhhhhhhcc
Q 018176 40 KQVWNWFQNRRYAIRAKS 57 (360)
Q Consensus 40 kQV~~WFQnrr~~~~~k~ 57 (360)
.||.-||||||..-+.+.
T Consensus 1 rQVkIWFQNRRaK~Kk~~ 18 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRV 18 (37)
T ss_dssp CCTTTTTTCSHHHHTSSH
T ss_pred CCceeccHHHHHHHHHHh
Confidence 389999999998865544
No 90
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=91.93 E-value=0.061 Score=46.04 Aligned_cols=43 Identities=26% Similarity=0.422 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHhcCCCCC--------CCCcccchhhHHHHHhhhhhhhh
Q 018176 12 MPSREILVALAEKFSESPER--------KGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 12 ~p~r~~~q~LAe~Fs~S~~R--------aGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
.+..+-++.|-..|...+-- +-+.-+.-.||+.||||||...+
T Consensus 107 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~k 157 (160)
T 1e3o_C 107 SIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 157 (160)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhh
Confidence 35677778888888765432 34566889999999999988654
No 91
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.92 E-value=0.32 Score=37.80 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=41.7
Q ss_pred cccccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcceeecc
Q 018176 184 SECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRP 251 (360)
Q Consensus 184 sEC~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC~rP 251 (360)
+.....++||.+++--. |.+||.|.|.+|... + ++.|+|+.. +.|.|+..+|--.|
T Consensus 5 ~~~~~~kvGd~clA~ws---Dg~~Y~A~I~~v~~~-----~---~~~V~f~Dy-n~e~v~~~~lrplp 60 (74)
T 2equ_A 5 SSGFDFKAGEEVLARWT---DCRYYPAKIEAINKE-----G---TFTVQFYDG-VIRCLKRMHIKAMP 60 (74)
T ss_dssp CSCCCCCTTCEEEEECS---SSSEEEEEEEEESTT-----S---SEEEEETTS-CEEEECGGGEECCC
T ss_pred cCCCCCCCCCEEEEECC---CCCEEEEEEEEECCC-----C---EEEEEEecC-CeEEecHHHCeeCC
Confidence 34567899999998543 568999999999532 2 358999988 88888877664444
No 92
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=91.60 E-value=0.067 Score=45.20 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHhcCCCCC--------CCCcccchhhHHHHHhhhhhhh
Q 018176 12 MPSREILVALAEKFSESPER--------KGKIMVQMKQVWNWFQNRRYAI 53 (360)
Q Consensus 12 ~p~r~~~q~LAe~Fs~S~~R--------aGK~~Vq~kQV~~WFQnrr~~~ 53 (360)
.+..+-++.|-..|...+-- +-+.-+.-+||+.||||||...
T Consensus 99 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~ 148 (151)
T 3d1n_I 99 SFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTL 148 (151)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhcc
Confidence 36677888888888765432 2455688999999999998754
No 93
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=91.54 E-value=0.45 Score=42.48 Aligned_cols=90 Identities=18% Similarity=0.346 Sum_probs=57.5
Q ss_pred EeeccCCCceeehhhhhhcccc--------------CCCCCeEEEEecCCCcCcccccccccccccCCCccccccccccc
Q 018176 125 EAKSARDGAWYDVSAFLAQRNF--------------DTADPEVQVRFAGFGAEEDEWVNIKRHVRQRSLPCEASECVAVL 190 (360)
Q Consensus 125 EAkSa~DgAWYDV~~fL~~r~l--------------~tGe~evrVrF~gFg~EeDEWvnvk~rvR~RSiPlE~sEC~~V~ 190 (360)
.|+-..-|||+...+.-=.|.- ..-+.-..|.|.+|.+..--=+.. +.+|+|..-+= .=+.|.
T Consensus 18 DarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~-~~iRpRARt~l--~w~~L~ 94 (161)
T 3db3_A 18 DARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNS-RDVRARARTII--KWQDLE 94 (161)
T ss_dssp EEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEG-GGEECCCCCBC--CGGGCC
T ss_pred eeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecch-hccccceEEec--cHHHCC
Confidence 4666668999764432211110 012356789998776554322333 58888887543 446899
Q ss_pred CCceEEE---eeecCCcceEeeEEEeeeee
Q 018176 191 PGDLILC---FQEGKDQALYFDAHVLDAQR 217 (360)
Q Consensus 191 pGdlVcC---f~eg~d~alyyDA~V~~VqR 217 (360)
+|+.|.. ..+-++--.||||.|..+..
T Consensus 95 vGqvVMvNYN~d~PkerGfWYDaeI~~~~~ 124 (161)
T 3db3_A 95 VGQVVMLNYNPDNPKERGFWYDAEISRKRE 124 (161)
T ss_dssp TTCEEEEEECSSSTTSCCEEEEEEEEEEEE
T ss_pred cCcEEEEecCCCCccccceeEEEEEeeehh
Confidence 9999994 44566788999999998743
No 94
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=91.46 E-value=0.071 Score=45.16 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHhcCCCCC--------CCCcccchhhHHHHHhhhhhhhh
Q 018176 12 MPSREILVALAEKFSESPER--------KGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 12 ~p~r~~~q~LAe~Fs~S~~R--------aGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
.++.+-++.|-..|...+-- +-+.-+.-.||+.||||||...+
T Consensus 93 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~k 143 (146)
T 1au7_A 93 TISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREK 143 (146)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhh
Confidence 35677788888888765432 34566889999999999987644
No 95
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=90.94 E-value=0.15 Score=36.39 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=26.6
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcc
Q 018176 125 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEED 165 (360)
Q Consensus 125 EAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeD 165 (360)
-|+-+.||.||...+.-- ...+.++.|.|.+||+.|.
T Consensus 9 ~A~~s~Dg~wYrA~I~~i----~~~~~~~~V~fvDYGn~e~ 45 (54)
T 3s6w_A 9 FALYWEDNKFYRAEVEAL----HSSGMTAVVKFIDYGNYEE 45 (54)
T ss_dssp EEEETTTTEEEEEEEEEC------CCSEEEEEETTTCCEEE
T ss_pred EEEECCCCCEEEEEEEEE----eCCCCEEEEEEEccCCeEE
Confidence 466678999999886521 1123679999999999753
No 96
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=90.86 E-value=0.08 Score=45.19 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHhcCCCCC--------CCCcccchhhHHHHHhhhhhhhh
Q 018176 12 MPSREILVALAEKFSESPER--------KGKIMVQMKQVWNWFQNRRYAIR 54 (360)
Q Consensus 12 ~p~r~~~q~LAe~Fs~S~~R--------aGK~~Vq~kQV~~WFQnrr~~~~ 54 (360)
.+..+-+..|-..|...+-- +-+.-+.-.||+.||||||...+
T Consensus 102 ~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~K 152 (155)
T 3l1p_A 102 SIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGK 152 (155)
T ss_dssp CCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeecccccccccc
Confidence 35778888898888755432 24556788999999999987643
No 97
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=90.58 E-value=0.1 Score=44.59 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=37.0
Q ss_pred eeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc---cccccCCCccccccccc
Q 018176 126 AKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK---RHVRQRSLPCEASECVA 188 (360)
Q Consensus 126 AkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk---~rvR~RSiPlE~sEC~~ 188 (360)
|+-+.||.||-..+.- ... +..+.|.|..||+.+. +-++| ..| .++|.++.+|.-
T Consensus 56 A~~~~d~~wyRa~I~~---~~~--~~~~~V~fvDyGn~~~-v~~lr~l~~~f--~~lP~qA~~c~L 113 (169)
T 3ntk_A 56 AQFPEDEVFYRAQIRK---VLD--DGKCEVHFIDFGNNAV-TQQFRQLPEEL--AKPARYSRHCEL 113 (169)
T ss_dssp EEETTTTEEEEEEEEE---ECS--TTCEEEEETTTTEEEE-ESCEECCCHHH--HSSCCSSEEEEE
T ss_pred EEECCCCcEEEEEEEE---ECC--CCEEEEEEEecCCeEE-hhhhhccCHHH--hhCCceeEEEEE
Confidence 5555699999988762 122 2379999999999876 32222 222 367888888864
No 98
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=90.36 E-value=0.14 Score=37.20 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=31.2
Q ss_pred EEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCccccccccccccc
Q 018176 124 FEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQ 176 (360)
Q Consensus 124 FEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR~ 176 (360)
--|+-+.||.||...+.- +......+.|.|.+||+.| -+++. .+|+
T Consensus 10 c~A~~s~Dg~wYrA~I~~----i~~~~~~~~V~f~DYGn~e--~v~~~-~Lr~ 55 (59)
T 1mhn_A 10 CSAIWSEDGCIYPATIAS----IDFKRETCVVVYTGYGNRE--EQNLS-DLLS 55 (59)
T ss_dssp EEEECTTTSCEEEEEEEE----EETTTTEEEEEETTTTEEE--EEEGG-GCBC
T ss_pred EEEEECCCCCEEEEEEEE----EcCCCCEEEEEEEcCCCEE--EEcHH-HeeC
Confidence 356667899999988652 1222368999999999874 34443 4444
No 99
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=90.19 E-value=0.7 Score=32.81 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=35.3
Q ss_pred ccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCccee
Q 018176 189 VLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVC 248 (360)
Q Consensus 189 V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC 248 (360)
.++||++++.- .+|..||.|+|++|.... =.+.|.|..=.+.|.|++.+|.
T Consensus 2 wk~G~~c~A~~--s~Dg~wYrA~I~~i~~~~-------~~~~V~fvDYGn~e~v~~~~lr 52 (54)
T 3s6w_A 2 WKPGDECFALY--WEDNKFYRAEVEALHSSG-------MTAVVKFIDYGNYEEVLLSNIK 52 (54)
T ss_dssp CCTTCEEEEEE--TTTTEEEEEEEEEC--CC-------SEEEEEETTTCCEEEEEGGGEE
T ss_pred CCCCCEEEEEE--CCCCCEEEEEEEEEeCCC-------CEEEEEEEccCCeEEEeHHHEE
Confidence 36899888643 235589999999986432 2457888877777888877763
No 100
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=90.13 E-value=0.47 Score=36.63 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=40.4
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcceeecc
Q 018176 187 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRP 251 (360)
Q Consensus 187 ~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC~rP 251 (360)
...+.||.|+|-= .+-+||.|.|.+|... +++.|.|+. .+.+.|....|=..|
T Consensus 5 ~~~~vGd~vmArW---~D~~yYpA~I~si~~~--------~~Y~V~F~d-G~~etvk~~~ikp~~ 57 (67)
T 3p8d_A 5 SEFQINEQVLACW---SDCRFYPAKVTAVNKD--------GTYTVKFYD-GVVQTVKHIHVKAFS 57 (67)
T ss_dssp CCCCTTCEEEEEC---TTSCEEEEEEEEECTT--------SEEEEEETT-SCEEEEEGGGEEECC
T ss_pred cccccCCEEEEEc---CCCCEeeEEEEEECCC--------CeEEEEEeC-CceEEEeHHHcccCC
Confidence 4678999999643 5789999999999765 579999998 666666666554433
No 101
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=89.37 E-value=0.13 Score=39.80 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=34.8
Q ss_pred CceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 132 GAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 132 gAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
.--|.|.-.|.+|....|..+++|+..||+.+++-|-+..
T Consensus 19 ~e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~ 58 (75)
T 2rsn_A 19 ADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQ 58 (75)
T ss_dssp GGCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGG
T ss_pred CceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHH
Confidence 3457888999999888899999999999999999997654
No 102
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=89.24 E-value=0.8 Score=35.25 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=43.0
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcceeeccc
Q 018176 187 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPE 252 (360)
Q Consensus 187 ~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC~rP~ 252 (360)
...++||++++.- . ++..||-|+|++|... .=.+.|+|..=.+.+.|++.+|...|.
T Consensus 8 ~~~~~G~~c~A~~-s-~Dg~wYRA~I~~i~~~-------~~~~~V~fiDYGN~e~V~~~~Lr~l~~ 64 (78)
T 2d9t_A 8 KVWKPGDECFALY-W-EDNKFYRAEVEALHSS-------GMTAVVKFTDYGNYEEVLLSNIKPVQT 64 (78)
T ss_dssp CCCCTTCEEEEEC-T-TTCCEEEEEEEEECSS-------SSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred cCCCcCCEEEEEE-C-CCCCEEEEEEEEEeCC-------CCEEEEEEEcCCCeEEEcHHHeEeCCH
Confidence 4578999977532 2 3568999999999632 136789998888889999999877654
No 103
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=88.57 E-value=0.33 Score=36.56 Aligned_cols=45 Identities=22% Similarity=0.446 Sum_probs=32.0
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 122 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 122 lEFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
|-+||... .+-||...+. . +...+..|+|+|.|.....|||++..
T Consensus 17 mkLEa~d~-~~p~~~AtV~-~---v~~~~~~~~VhfdGw~~~~D~W~~~d 61 (69)
T 3sd4_A 17 AQLEARDR-LKNWYPAHIE-D---IDYEEGKVLIHFKRWNHRYDEWFCWD 61 (69)
T ss_dssp CEEEEECT-TSCEEEEEEE-E---EETTTTEEEEEETTSCGGGCEEEETT
T ss_pred CEEEEEEC-CCCccccEEE-E---EeccCCEEEEEeCCCCCCCCEEEcCC
Confidence 77888863 4568744433 2 11133679999999999999999875
No 104
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=88.49 E-value=0.26 Score=37.98 Aligned_cols=56 Identities=14% Similarity=0.174 Sum_probs=35.4
Q ss_pred EEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccccccccCC-Cccccccc
Q 018176 124 FEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQRS-LPCEASEC 186 (360)
Q Consensus 124 FEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR~RS-iPlE~sEC 186 (360)
--|+-+.||.||...+.-- ...+..+.|+|..||+.|. +++. .+|+.. --+|+.-|
T Consensus 16 c~A~~s~Dg~wYRA~I~~i----~~~~~~~~V~fiDYGN~e~--V~~~-~Lr~l~~~ll~~~~~ 72 (78)
T 2d9t_A 16 CFALYWEDNKFYRAEVEAL----HSSGMTAVVKFTDYGNYEE--VLLS-NIKPVQTEAWVRDPN 72 (78)
T ss_dssp EEEECTTTCCEEEEEEEEE----CSSSSEEEEEETTTTEEEE--EEGG-GEEECCCCCCCCCSS
T ss_pred EEEEECCCCCEEEEEEEEE----eCCCCEEEEEEEcCCCeEE--EcHH-HeEeCCHHHhhhcCC
Confidence 4466678999999887622 1224689999999999854 4433 444432 22444444
No 105
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=88.01 E-value=0.092 Score=41.81 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=29.5
Q ss_pred CCceeehhhhhhccccCCCCCeEEEEecCCCcCccccccc
Q 018176 131 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI 170 (360)
Q Consensus 131 DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnv 170 (360)
++-||...+. +-+. ..|+.+..|||.||...-||||..
T Consensus 24 ~~~~y~AkIl-~i~~-~~~~~~YyVHY~GwNkR~DEWV~~ 61 (85)
T 2lrq_A 24 GPLIYEAKVL-KTKP-DATPVEYYIHYAGWSKNWDEWVPE 61 (85)
Confidence 5578877664 3332 457789999999999999999985
No 106
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=87.97 E-value=0.77 Score=37.11 Aligned_cols=52 Identities=12% Similarity=0.159 Sum_probs=38.3
Q ss_pred cccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcceee
Q 018176 186 CVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCR 249 (360)
Q Consensus 186 C~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC~ 249 (360)
-.....||.|++-= .+-+||.|.|.+|..- ++|.|.|+. .+.+.|....|=.
T Consensus 19 ~~~f~vGd~VlArW---~D~~yYPAkI~sV~~~--------~~YtV~F~D-G~~etvk~~~IKp 70 (85)
T 3qii_A 19 SSEFQINEQVLACW---SDCRFYPAKVTAVNKD--------GTYTVKFYD-GVVQTVKHIHVKA 70 (85)
T ss_dssp --CCCTTCEEEEEC---TTSCEEEEEEEEECTT--------SEEEEEETT-SCEEEEEGGGEEE
T ss_pred CcccccCCEEEEEe---CCCCEeeEEEEEECCC--------CeEEEEEeC-CCeEEecHHHccc
Confidence 45788999999533 4789999999999865 579999998 5555555555433
No 107
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=87.90 E-value=0.29 Score=39.14 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=32.6
Q ss_pred eEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCccccccccccccc
Q 018176 123 EFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQ 176 (360)
Q Consensus 123 EFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR~ 176 (360)
.--|+-+.||.||...+.--. .....+.|.|.+||+.|. |++. ++|+
T Consensus 16 ~C~A~ys~Dg~wYrA~I~~i~----~~~~~~~V~fiDYGN~E~--V~~~-~Lrp 62 (88)
T 1g5v_A 16 KCSAIWSEDGCIYPATIASID----FKRETCVVVYTGYGNREE--QNLS-DLLS 62 (88)
T ss_dssp EEEEECTTTCCEEEEEEEEEE----TTTTEEEEEETTTCCEEE--EEGG-GCBC
T ss_pred EEEEEECCCCCEEEEEEEEec----CCCCEEEEEEecCCCEEE--EcHH-Hccc
Confidence 456777889999998765321 113679999999999864 4433 4554
No 108
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=87.01 E-value=0.12 Score=41.30 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=36.9
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcce
Q 018176 187 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKV 247 (360)
Q Consensus 187 ~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kv 247 (360)
...++||.|++-.. |.+||.|.|.+|... + .+.|.|+. .+.|.|++.+|
T Consensus 5 ~~~kvGd~clAkws---Dg~wY~A~I~~v~~~-----~---~y~V~F~D-Gn~E~V~~s~L 53 (81)
T 2ldm_A 5 SEFQINEQVLASWS---DSRFYPAKVTAVNKD-----G---TYTVKFYD-GVVQTVKHIHV 53 (81)
Confidence 45789999997332 568999999999642 1 67899988 57777877765
No 109
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=86.92 E-value=0.34 Score=35.92 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=32.4
Q ss_pred eEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCccccccccccccc
Q 018176 123 EFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQ 176 (360)
Q Consensus 123 EFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR~ 176 (360)
.--|+-+.||.||...+.--. .....+.|.|.+||+.| .+++. .+|+
T Consensus 14 ~c~A~~s~Dg~wYrA~I~~v~----~~~~~~~V~fvdYGn~e--~V~~~-~Lrp 60 (64)
T 4a4f_A 14 KCMAVWSEDGQCYEAEIEEID----EENGTAAITFAGYGNAE--VTPLL-NLKP 60 (64)
T ss_dssp EEEEECTTTSSEEEEEEEEEE----TTTTEEEEEETTTTEEE--EEEGG-GEEC
T ss_pred EEEEEECCCCCEEEEEEEEEc----CCCCEEEEEEEecCCEE--EEeHH-HcEe
Confidence 455777889999998765221 11257999999999974 35544 5554
No 110
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=85.96 E-value=2 Score=33.34 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=39.8
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCcc--ccccCcce
Q 018176 188 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKV 247 (360)
Q Consensus 188 ~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpse--e~V~l~kv 247 (360)
.+..|+.|+|+........+|+|.|++|... +..-.|.|-|.-=+.- |=|+..+|
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~-----~~~~~Y~VHY~gwnkr~DEWV~~~ri 61 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEID-----DGEVLYLVHYYGWNVRYDEWVKADRI 61 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEE-----TTEEEEEEEETTSCCSSCEEEEGGGE
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEcc-----CCceEEEEEeCCcCCCceEecChhhc
Confidence 5679999999987544568999999998753 2445688888765544 44665555
No 111
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=85.76 E-value=0.48 Score=36.61 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=27.8
Q ss_pred eEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcc
Q 018176 123 EFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEED 165 (360)
Q Consensus 123 EFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeD 165 (360)
.--|+-+.||.||...+.-- ..+ ...+.|.|.+||+.+.
T Consensus 23 ~C~A~ys~Dg~wYRA~I~~i---~~~-~~~~~V~fvDYGN~e~ 61 (77)
T 3pnw_C 23 ECFALYWEDNKFYRAEVEAL---HSS-GMTAVVKFIDYGNYEE 61 (77)
T ss_dssp EEEEEETTTTEEEEEEEEEE---CTT-SSEEEEEETTTCCEEE
T ss_pred EEEEEECCCCCEEEEEEEEE---eCC-CCEEEEEEEcCCCeEE
Confidence 34567678999999887521 111 2579999999999654
No 112
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=84.11 E-value=2.3 Score=32.81 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=40.3
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcceeecc
Q 018176 187 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRP 251 (360)
Q Consensus 187 ~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC~rP 251 (360)
..+++|+++++.. .++..||-|.|++|... . .+.|.|..=.+.+.|++.+|...|
T Consensus 26 ~~~~~G~~c~a~~--~~d~~wyRA~I~~~~~~----~----~~~V~fvDyGn~e~v~~~~lr~l~ 80 (94)
T 3fdr_A 26 LTVHVGDIVAAPL--PTNGSWYRARVLGTLEN----G----NLDLYFVDFGDNGDCPLKDLRALR 80 (94)
T ss_dssp CCCCTTCEEEEEE--TTTTEEEEEEEEEECTT----S----CEEEEETTTCCEEEECGGGCEECC
T ss_pred CCCCCCCEEEEEE--CCCCeEEEEEEEEECCC----C----eEEEEEEcCCCeEEEEHHHhhhcC
Confidence 4678999887632 23578999999999531 1 356777777777889988887665
No 113
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=84.10 E-value=2.7 Score=34.64 Aligned_cols=52 Identities=21% Similarity=0.502 Sum_probs=38.5
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCcc--ccccCccee
Q 018176 188 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKVC 248 (360)
Q Consensus 188 ~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpse--e~V~l~kvC 248 (360)
.+..|+.|+||. +-.+|+|.|++|... +..-.|.|-|.-=+.- |-|+..+|-
T Consensus 22 ~f~vGekVl~~~----~~~~YeAkIl~v~~~-----~~~~~Y~VHY~GwNkR~DEWV~~~Rl~ 75 (102)
T 2f5k_A 22 KFQEGERVLCFH----GPLLYEAKCVKVAIK-----DKQVKYFIHYSGWNKNWDEWVPESRVL 75 (102)
T ss_dssp SCCTTCEEEEES----SSSEEEEEEEEEEEE-----TTEEEEEEEETTSCGGGCEEEEGGGEE
T ss_pred ccCCCCEEEEEE----CCEEEEEEEEEEEEc-----CCCcEEEEEeCCcCCCceeeccHhhcc
Confidence 578999999998 347999999999963 2345688998865554 556655554
No 114
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=84.08 E-value=2.4 Score=35.02 Aligned_cols=60 Identities=13% Similarity=0.321 Sum_probs=37.2
Q ss_pred cccCCceEEEeee-cCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCcc--ccccCcce
Q 018176 188 AVLPGDLILCFQE-GKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKV 247 (360)
Q Consensus 188 ~V~pGdlVcCf~e-g~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpse--e~V~l~kv 247 (360)
.+.+|+.|+||+. .....+.|+|.|++|....=.-..-.=.++|-|.-=++- |-|+-.+|
T Consensus 19 ~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRi 81 (101)
T 3m9q_A 19 LFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVL 81 (101)
T ss_dssp CCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGE
T ss_pred cccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHc
Confidence 4679999999995 233557999999999865322112223477877533322 44554443
No 115
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=83.42 E-value=0.73 Score=38.28 Aligned_cols=45 Identities=24% Similarity=0.459 Sum_probs=36.8
Q ss_pred ceeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCccccccc
Q 018176 121 FMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI 170 (360)
Q Consensus 121 ~lEFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnv 170 (360)
-|-+||.-.++-..+-|++..+- .+..|+|+|.|+.++.|.|+++
T Consensus 17 GMKLEAvD~~~p~~icvATV~~v-----~g~rl~v~fDGw~~~~D~W~~~ 61 (107)
T 1wjq_A 17 KMKLEVVDKRNPMFIRVATVADT-----DDHRVKVHFDGWNNCYDYWIDA 61 (107)
T ss_dssp SCEEEEECTTCTTCEEEEEEEEE-----CSSCEEEECSSSCGGGCEEECT
T ss_pred CCEEEEEcCCCCCcEEeEEEEEe-----cCCEEEEEeCCCCCcCCEEEEC
Confidence 38899999888887777766542 3467999999999999999886
No 116
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=83.23 E-value=2.6 Score=35.39 Aligned_cols=60 Identities=17% Similarity=0.401 Sum_probs=38.5
Q ss_pred cccCCceEEEeeec-CCcceEeeEEEeeeeecccCCCCc-ceEEEEEEecCCcc--ccccCccee
Q 018176 188 AVLPGDLILCFQEG-KDQALYFDAHVLDAQRRRHDVRGC-RCRFLVRYDHDQSE--EIVPLRKVC 248 (360)
Q Consensus 188 ~V~pGdlVcCf~eg-~d~alyyDA~V~~VqRr~Hd~rgC-rC~FlVrw~Hdpse--e~V~l~kvC 248 (360)
.+..|+.|+||... ....++|+|.|++|....-+ .|- .-.++|.|.-=+.- |-|+-.+|-
T Consensus 19 ~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~-~g~~~~~Y~VHY~GWn~~wDEWV~e~rll 82 (110)
T 3m9p_A 19 KFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDE-KGRKIPEYLIHFNGWNRSWDRWAAEDHVL 82 (110)
T ss_dssp CSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECT-TCCEEEEEEEEETTSCGGGCEEEEGGGEE
T ss_pred cccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCc-ccccceEEEEEECCCCcchhhccCHhhhh
Confidence 47799999999753 33568999999999976422 232 23577888532221 556554443
No 117
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=82.71 E-value=0.85 Score=39.59 Aligned_cols=57 Identities=25% Similarity=0.391 Sum_probs=39.0
Q ss_pred EEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccccccc-----cCCCccccccccc
Q 018176 124 FEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVR-----QRSLPCEASECVA 188 (360)
Q Consensus 124 FEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR-----~RSiPlE~sEC~~ 188 (360)
.=|+.+.||.||-+.+. + .. ++.++.|.|..||+.+ +++.. .+| ..++|.|+.+|..
T Consensus 72 c~a~~~~d~~wyRa~V~-~--~~--~~~~~~V~~vDyG~~~--~v~~~-~l~~l~~~f~~lP~qA~~c~L 133 (201)
T 4b9w_A 72 CCAFFSGDGNWYRALVK-E--IL--PSGNVKVHFVDYGNVE--EVTTD-QLQAILPQFLLLPFQGMQCWL 133 (201)
T ss_dssp EEEEETTTTEEEEEEEE-E--EC--TTSCEEEEETTTCCEE--EECGG-GEEECCGGGGSSCBCCEEEEE
T ss_pred EEEEECCCCeEEEEEEE-E--EC--CCCeEEEEEEccCCEE--EEEHH-HhccChHhHcccchhhEEEEE
Confidence 34666789999988764 1 11 2356999999999974 44432 222 2578999999975
No 118
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=82.28 E-value=2.9 Score=35.45 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=39.8
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCcc--ccccCccee
Q 018176 188 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKVC 248 (360)
Q Consensus 188 ~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpse--e~V~l~kvC 248 (360)
.+..|+.|+||.. +-.||.|.|++|.... .. ..-.|.|-|.-=+.- |=|+..+|-
T Consensus 12 ~~~vGe~v~~~~~---d~~~y~AkIl~i~~~~--~~-~~~~YyVHY~gwNkR~DEWV~~~ri~ 68 (133)
T 1wgs_A 12 TVEIGETYLCRRP---DSTWHSAEVIQSRVND--QE-GREEFYVHYVGFNRRLDEWVDKNRLA 68 (133)
T ss_dssp CCCTTSEEEEEET---TTEEEEEEEEEEEEET--TT-TEEEEEEECTTTCSSCCEEECTTTSC
T ss_pred ccCCCCEEEEEeC---CCCEEEEEEEEEEecc--CC-CceEEEEeccCcCCCceeecChhhcc
Confidence 4789999999984 3489999999988643 12 245788988855544 557777763
No 119
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=82.01 E-value=0.91 Score=40.20 Aligned_cols=55 Identities=25% Similarity=0.366 Sum_probs=38.7
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCccccccc------ccccccCCCccccccccc
Q 018176 125 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI------KRHVRQRSLPCEASECVA 188 (360)
Q Consensus 125 EAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnv------k~rvR~RSiPlE~sEC~~ 188 (360)
=|+-+.||.||-+.+. + . .++.++.|.|..||+.+ +++. ...| .++|.|+.+|..
T Consensus 73 ~a~~~~d~~WyRa~V~-~--~--~~~~~~~V~~vDyGn~~--~v~~~~l~~l~~~f--~~lP~qA~~c~L 133 (226)
T 4b9x_A 73 CAFFSGDGNWYRALVK-E--I--LPSGNVKVHFVDYGNVE--EVTTDQLQAILPQF--LLLPFQGMQCWL 133 (226)
T ss_dssp EEEETTTTEEEEEEEE-E--E--CSSSEEEEECTTTCCEE--EEEGGGEECCCGGG--SSSCBCCEEEEE
T ss_pred EEEECCCCeEEEEEEE-E--E--CCCCeEEEEEEecCCEE--EEEHHHhccChHHH--cccccceEEEEE
Confidence 4666679999988764 1 1 13457999999999974 3433 2333 578999999975
No 120
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=81.04 E-value=0.54 Score=37.60 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=30.5
Q ss_pred eehhhhhhcccc-CCCCCeEEEEecCCCc-Ccccccccc
Q 018176 135 YDVSAFLAQRNF-DTADPEVQVRFAGFGA-EEDEWVNIK 171 (360)
Q Consensus 135 YDV~~fL~~r~l-~tGe~evrVrF~gFg~-EeDEWvnvk 171 (360)
|.|...|.+|+. ..|..+++|+..||++ +++-|-+..
T Consensus 31 y~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~ 69 (92)
T 2rso_A 31 YVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEA 69 (92)
T ss_dssp CCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGG
T ss_pred EEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHH
Confidence 778888999975 4688999999999996 777897654
No 121
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=80.35 E-value=3.2 Score=37.02 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=51.7
Q ss_pred cccccccccCCceEEEeeecCCcceEeeEEEeeeeecccC-----------CCCcceEEEEEEecCCccccccCcceeec
Q 018176 182 EASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHD-----------VRGCRCRFLVRYDHDQSEEIVPLRKVCRR 250 (360)
Q Consensus 182 E~sEC~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd-----------~rgCrC~FlVrw~Hdpsee~V~l~kvC~r 250 (360)
-+.++.--+.||+|=|-..+ .-.||-|+|+.|.|+.-. ..++.+.+-|.|+..|..+.|.+.-...|
T Consensus 4 ~d~~~glYKinelVDarD~~--~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~~iR 81 (161)
T 3db3_A 4 DETELGLYKVNEYVDARDTN--MGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVR 81 (161)
T ss_dssp CCBCCCSSCTTCEEEEECTT--TCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGGGEE
T ss_pred cccccceEEecceeeeeccC--CCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchhccc
Confidence 45567778899999886543 467999999999997432 23689999999999999888877777777
Q ss_pred cc
Q 018176 251 PE 252 (360)
Q Consensus 251 P~ 252 (360)
|.
T Consensus 82 pR 83 (161)
T 3db3_A 82 AR 83 (161)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 122
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=80.10 E-value=1.5 Score=38.81 Aligned_cols=55 Identities=25% Similarity=0.456 Sum_probs=33.8
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCccccccc------ccccccCCCcccccccc
Q 018176 125 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI------KRHVRQRSLPCEASECV 187 (360)
Q Consensus 125 EAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnv------k~rvR~RSiPlE~sEC~ 187 (360)
-|+-+ ||.||-+.+.--. . +..+.|.|..||+.+ +++. ...|..+.+|.+..+|.
T Consensus 73 ~a~~~-d~~wyRa~V~~~~----~-~~~~~V~~vDyGn~~--~v~~~~lr~l~~~~~~~~lp~~a~~~~ 133 (246)
T 2hqx_A 73 IAKFV-DGEWYRARVEKVE----S-PAKIHVFYIDYGNRE--VLPSTRLGTLSPAFSTRVLPAQATEYA 133 (246)
T ss_dssp EEECT-TSCEEEEEEEEEE----E-TTEEEEEETTTCCEE--EECGGGEECCCGGGSTTTSCCCC----
T ss_pred EEEcC-CCCEEEEEEEEEc----C-CCeEEEEEEeCCCeE--EEeHHHhhcCCHhHcCCCCchhhhhhh
Confidence 34444 9999988765221 1 257999999999965 3332 24444447899999994
No 123
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=78.76 E-value=0.53 Score=36.24 Aligned_cols=40 Identities=25% Similarity=0.553 Sum_probs=34.2
Q ss_pred CceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 132 GAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 132 gAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
.--|.|.-.|.+|....|..+++|+..||..+++-|-+..
T Consensus 11 ~~~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~ 50 (78)
T 2dnt_A 11 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQ 50 (78)
T ss_dssp SCSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETT
T ss_pred CceEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHH
Confidence 3457888889999777889999999999999999998654
No 124
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=78.19 E-value=5.2 Score=32.26 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=39.4
Q ss_pred cccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCcc--ccccCcce
Q 018176 186 CVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKV 247 (360)
Q Consensus 186 C~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpse--e~V~l~kv 247 (360)
-..+..|+.|+|++ +-.+|.|.|++|.... | .-.|.|-|..=+.- |=|+..+|
T Consensus 21 ~~~~~vG~kv~v~~----~~~~y~AkIl~ir~~~----~-~~~YyVHY~g~NkRlDEWV~~~rl 75 (92)
T 2ro0_A 21 VDDIIIKCQCWVQK----NDEERLAEILSINTRK----A-PPKFYVHYVNYNKRLDEWITTDRI 75 (92)
T ss_dssp TTSCCTTCEEEEEE----TTEEEEEEEEEEECSS----S-SCEEEEEETTSCTTSCEEEEGGGE
T ss_pred cccccCCCEEEEEE----CCEEEEEEEEEEEEcC----C-CcEEEEEeCCcCcccccccCHhHc
Confidence 34688999999996 4589999999998642 3 34688998877765 44666665
No 125
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=77.29 E-value=0.97 Score=34.05 Aligned_cols=40 Identities=13% Similarity=0.337 Sum_probs=34.0
Q ss_pred CceeehhhhhhccccCCCCCe-EEEEecCCCcCcccccccc
Q 018176 132 GAWYDVSAFLAQRNFDTADPE-VQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 132 gAWYDV~~fL~~r~l~tGe~e-vrVrF~gFg~EeDEWvnvk 171 (360)
.-=|.|.-.|.+|....|..+ ++|+..||+.+++-|-+..
T Consensus 6 ~~ey~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~e 46 (70)
T 1g6z_A 6 QEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPE 46 (70)
T ss_dssp SCSSCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGG
T ss_pred CceEEEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHH
Confidence 344789999999976668888 9999999999999998764
No 126
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=76.56 E-value=2.1 Score=37.04 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=22.6
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeee
Q 018176 188 AVLPGDLILCFQEGKDQALYFDAHVLDAQR 217 (360)
Q Consensus 188 ~V~pGdlVcCf~eg~d~alyyDA~V~~VqR 217 (360)
.+.+|++||||+ .-++|+|.|++|..
T Consensus 9 ~f~~gekvl~~h----g~llYeAKVl~v~~ 34 (136)
T 2k3y_A 9 EFALGGRVLAFH----GPLMYEAKILKIWD 34 (136)
T ss_dssp SCCTTSEEEEEC----SSCEEEEEEEEEEE
T ss_pred ccCCCCEEEEEE----CCeeEEEEEEEEEe
Confidence 577999999999 24699999999986
No 127
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=75.41 E-value=0.78 Score=35.14 Aligned_cols=40 Identities=18% Similarity=0.376 Sum_probs=33.1
Q ss_pred CCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 131 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 131 DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
+.-.|.|.-.|.+|. ..|..++.|+..||+.+++.|-+..
T Consensus 13 ~~~ey~VEkIld~R~-~~g~~eYlVKWkGy~~~~~TWEp~e 52 (69)
T 1q3l_A 13 EEEEYAVEKIIDRRV-RKGMVEYYLKWKGYPETENTWEPEN 52 (69)
T ss_dssp ---CEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred CCCcEEEEEEEEEEE-ECCeEEEEEEEcCCCcccCCccchH
Confidence 566889999999996 5788999999999999999998764
No 128
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=74.78 E-value=3.4 Score=32.78 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=40.4
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcceeeccc
Q 018176 188 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPE 252 (360)
Q Consensus 188 ~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC~rP~ 252 (360)
.+++|+++++.. .++..||-|+|++|... . .+.|+|..=.+.+.|++.+|...|.
T Consensus 32 ~~~~G~~c~a~~--~~d~~wyRA~V~~~~~~----~----~~~V~fvDyGn~e~v~~~~Lr~l~~ 86 (110)
T 2diq_A 32 TVHVGDIVAAPL--PTNGSWYRARVLGTLEN----G----NLDLYFVDFGDNGDCPLKDLRALRS 86 (110)
T ss_dssp CCCTTCEEEECC--TTTCSCEEEEECCCCSS----S----CEEEEETTTCCEEEECGGGCEECCH
T ss_pred CCCCCCEEEEEE--CCCCeEEEEEEEEECCC----C----eEEEEEEeCCCeEEEehHHhhcCcH
Confidence 577999877632 23557999999998642 1 4568888777778899998877653
No 129
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=74.21 E-value=0.95 Score=32.53 Aligned_cols=36 Identities=17% Similarity=0.389 Sum_probs=31.3
Q ss_pred eehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 135 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 135 YDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
|.|.-.|.+|. ..|..+..|+..||+.+++.|.+..
T Consensus 4 y~VE~Il~~r~-~~g~~~YlVKWkgy~~~~~TWEp~~ 39 (55)
T 1pfb_A 4 YAAEKIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPEV 39 (55)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEE-eCCeEEEEEEEcCCCCccCcEeEHH
Confidence 67888888886 5788999999999999999998765
No 130
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=74.19 E-value=1.9 Score=36.40 Aligned_cols=45 Identities=13% Similarity=0.314 Sum_probs=36.8
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCc--Ccccccccc
Q 018176 122 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGA--EEDEWVNIK 171 (360)
Q Consensus 122 lEFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~--EeDEWvnvk 171 (360)
|-+||.-.++-..|=|++...-. ..-|+|||.|+.+ .+|-|+++.
T Consensus 16 mKLEa~D~~~p~~~~vAtV~~v~-----g~rl~l~~dG~~~~~~~D~W~~~~ 62 (127)
T 1wjr_A 16 SLIELQDSQNPFQYWIVSVIENV-----GGRLRLRYVGLEDTESYDQWLFYL 62 (127)
T ss_dssp CEEEEECSSCSSCEEEEECCCEE-----TTEEEECBTTCSSCCSSCEEEETT
T ss_pred CEeEEecCCCCCcEEEEEEeeee-----CCEEEEEecCCCCCCCCCEeEeCC
Confidence 77888888888888888776532 2579999999999 579999875
No 131
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.83 E-value=4.5 Score=32.36 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=41.3
Q ss_pred cccCCceEEEeee-cCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCcc--ccccCcceee
Q 018176 188 AVLPGDLILCFQE-GKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKVCR 249 (360)
Q Consensus 188 ~V~pGdlVcCf~e-g~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpse--e~V~l~kvC~ 249 (360)
.+..|+.|+|++. ...+-.+|.|.|++|.... ..-.|.|-|..-+.- |=|+..+|-+
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~-----~~~~YyVHY~g~NkRlDEWV~~~rl~~ 68 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDIS-----GRKLFYVHYIDFNRRLDEWVTHERLDL 68 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSS-----SCCCEEEEECSSCSCCCEEECTTTBCG
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcC-----CCcEEEEEeCCCCcccccccCHhHccc
Confidence 5779999999985 3346689999999988632 234588988877665 4466666643
No 132
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=73.83 E-value=0.99 Score=33.02 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=30.9
Q ss_pred eehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 135 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 135 YDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
|.|.-.|.+|. ..|..+++|+..||+.+++-|-+..
T Consensus 4 y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~ 39 (59)
T 3fdt_A 4 YVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEK 39 (59)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEE-eCCeEEEEEEEeCCCcccCCccchh
Confidence 67888888885 4789999999999999999997654
No 133
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=73.68 E-value=0.94 Score=32.51 Aligned_cols=36 Identities=17% Similarity=0.455 Sum_probs=30.8
Q ss_pred eehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 135 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 135 YDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
|.|.-.|.+|. ..|..++.|+..||+.+++-|-+..
T Consensus 4 y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~ 39 (54)
T 3h91_A 4 FAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEE 39 (54)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred eEEEEEEEEEE-eCCcEEEEEEEeCCCCcCCCeecHh
Confidence 77888888885 5788999999999999999997654
No 134
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=73.58 E-value=0.95 Score=32.41 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=30.7
Q ss_pred eehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 135 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 135 YDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
|.|.-.|.+|. ..|..++.|+..||+.+++-|-+..
T Consensus 4 y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~ 39 (54)
T 3i91_A 4 FAAEALLKRRI-RKGRMEYLVKWKGWSQKYSTWEPEE 39 (54)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEE-eCCcEEEEEEEeCCCcccCcccchh
Confidence 77888888885 5788999999999999999997654
No 135
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=73.02 E-value=6 Score=32.24 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=38.7
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCcc--ccccCcce
Q 018176 187 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKV 247 (360)
Q Consensus 187 ~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpse--e~V~l~kv 247 (360)
..+..|+.|+|+. +-.+|.|.|++|..+ .| .-.|.|-|..-+.- |=|+..+|
T Consensus 24 ~~~~vG~kv~v~~----~~~~yeAeIl~ir~~----~g-~~~YYVHY~g~NkRlDEWV~~~RI 77 (94)
T 2rnz_A 24 DDIIIKCQCWVQK----NDEERLAEILSINTR----KA-PPKFYVHYVNYNKRLDEWITTDRI 77 (94)
T ss_dssp GGCCTTEEEEEEC----SSCEEEEEEEEEECS----SS-SCEEEEECTTSCSTTCEEEETTTB
T ss_pred ccccCCCEEEEEE----CCEEEEEEEEEEEEc----CC-CcEEEEEeCCcCcccccccCHHHc
Confidence 4578999999996 447999999999864 23 34688988877665 44666655
No 136
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=72.88 E-value=0.84 Score=33.70 Aligned_cols=36 Identities=19% Similarity=0.518 Sum_probs=30.7
Q ss_pred eehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 135 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 135 YDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
|.|.-.|.+|. ..|..+++|+..||+.+++-|-+..
T Consensus 5 y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~ 40 (62)
T 3lwe_A 5 FEVEKILDMKT-EGGKVLYKVRWKGYTSDDDTWEPEI 40 (62)
T ss_dssp CCEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEHH
T ss_pred EEEEEEEEEEE-cCCeEEEEEEEeCCCCcCCCeeeHh
Confidence 77888888885 5788999999999999999997654
No 137
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=71.95 E-value=0.98 Score=32.54 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=30.4
Q ss_pred eehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 135 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 135 YDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
|.|.-.|.+|. ..|..++.|+..||+.+++-|-+..
T Consensus 3 y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~ 38 (55)
T 3f2u_A 3 YVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEE 38 (55)
T ss_dssp CCEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEE-eCCeEEEEEEEEeCCCccCCeeEHH
Confidence 66777888885 4688999999999999999997765
No 138
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=71.54 E-value=1.3 Score=34.29 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=33.1
Q ss_pred CCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 131 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 131 DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
+..-|.|.-.|..|. ..|..+++|+..||+.+++.|-+..
T Consensus 17 ~~~eyeVEkIld~r~-~~g~~~YlVKWkGy~~~~nTWEP~e 56 (72)
T 1pdq_A 17 VDLVYAAEKIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPEV 56 (72)
T ss_dssp -CEEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred CCceEEEEEEEEEEE-eCCcEEEEEEECCCCCccCeecchH
Confidence 345678888888885 6788999999999999999998765
No 139
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=70.84 E-value=2.5 Score=36.04 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=35.6
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCccccccccccccc-----CCCccccccccc
Q 018176 125 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQ-----RSLPCEASECVA 188 (360)
Q Consensus 125 EAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR~-----RSiPlE~sEC~~ 188 (360)
-|+-+.||.||-+.+.-- .+..+.|.|..||+.+- ++.. .+|+ .++|.+..+|+-
T Consensus 59 ~a~~~~d~~wyRa~V~~v------~~~~~~V~~vDyG~~~~--v~~~-~l~~l~~~~~~~p~~a~~~~L 118 (218)
T 2wac_A 59 AAQFTLDNQWYRAKVERV------QGSNATVLYIDYGNKET--LPTN-RLAALPPAFSSEKPYATEYAL 118 (218)
T ss_dssp EEECTTTCCEEEEEEEEE------ETTEEEEEETTTCCEEE--EEGG-GEEECCGGGSSSCCSEEEEEE
T ss_pred EEEECCCCeEEEEEEEEe------cCCeEEEEEEecCCeEE--EchH-HcccCChhhccCCcceeEEEE
Confidence 345556999998876522 12679999999999753 3322 2332 356777777753
No 140
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=69.20 E-value=1.3 Score=32.78 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=32.5
Q ss_pred ceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 133 AWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 133 AWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
-=|.|.-.|.+|. ..|..+++|+..||..+++-|-+..
T Consensus 9 ~ey~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~ 46 (64)
T 2dnv_A 9 RVFAAEALLKRRI-RKGRMEYLVKWKGWSQKYSTWEPEE 46 (64)
T ss_dssp CCCCCCCEEEEEE-SSSSEEEEECCSSCCCSSCCEEETT
T ss_pred ceEEEEEEEEEEE-eCCcEEEEEEECCCCcccCCccCHh
Confidence 3468888899885 6788999999999999999998764
No 141
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=69.02 E-value=2.6 Score=35.89 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=31.2
Q ss_pred eeEEeeccCCC----ceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccccccccC
Q 018176 122 MEFEAKSARDG----AWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQR 177 (360)
Q Consensus 122 lEFEAkSa~Dg----AWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR~R 177 (360)
.+=|+++..++ .||-..+..-. | .-..|.|.||+...+||++.. |+|+.
T Consensus 65 d~VEV~~~~~d~ep~gWw~a~I~~~k-----g-~f~~V~y~~~~~~~~EiV~~~-rlR~~ 117 (128)
T 3h8z_A 65 DEVEVYSRANEQEPCGWWLARVRMMK-----G-DFYVIEYAACDATYNEIVTLE-RLRPV 117 (128)
T ss_dssp CEEEEEECC---CCCEEEEEEEEEEE-----T-TEEEEEETTC----CEEECGG-GEEEC
T ss_pred CEEEEEecCCCCCcCccEEEEEEEee-----C-CEEEEEEcCCCCCcceEEehh-heEeC
Confidence 34567776567 89987764321 3 458999999999999999954 88875
No 142
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=67.81 E-value=2 Score=37.20 Aligned_cols=20 Identities=25% Similarity=0.642 Sum_probs=18.7
Q ss_pred eEEEEecCCCcCcccccccc
Q 018176 152 EVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 152 evrVrF~gFg~EeDEWvnvk 171 (360)
+.+|||.||..--||||...
T Consensus 78 ~Y~VHY~GWn~rwDEWV~~d 97 (136)
T 2k3y_A 78 SFFIHYQGWKSSWDEWVGYD 97 (136)
T ss_dssp EEEECCTTSCGGGCEEEETT
T ss_pred eEEEEeCCcCCcceeeecHh
Confidence 89999999999999999874
No 143
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=67.66 E-value=2.2 Score=31.40 Aligned_cols=40 Identities=25% Similarity=0.453 Sum_probs=31.9
Q ss_pred CCceeehhhhhhccccCCCCC-eEEEEecCCCcCcccccccc
Q 018176 131 DGAWYDVSAFLAQRNFDTADP-EVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 131 DgAWYDV~~fL~~r~l~tGe~-evrVrF~gFg~EeDEWvnvk 171 (360)
|..=|.|.-.|.+|.. .|.. +++|+..||+.+++-|-+..
T Consensus 4 ~~~ey~VE~Il~~r~~-~g~~~~YlVkWkGy~~~~~TWEp~~ 44 (61)
T 3g7l_A 4 DADVYEVEDILADRVN-KNGINEYYIKWAGYDWYDNTWEPEQ 44 (61)
T ss_dssp -CCEEEEEEEEEEEEC-TTSCEEEEEEETTSCGGGCEEEEGG
T ss_pred CCcEEEEEEEEEEEEE-CCCEEEEEEEEeCCCCcCCceeeHh
Confidence 3445888889999864 5666 99999999999999997654
No 144
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=66.52 E-value=3.7 Score=41.09 Aligned_cols=58 Identities=24% Similarity=0.418 Sum_probs=39.5
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcc----cccccccccccCCCccccccccc
Q 018176 125 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEED----EWVNIKRHVRQRSLPCEASECVA 188 (360)
Q Consensus 125 EAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeD----EWvnvk~rvR~RSiPlE~sEC~~ 188 (360)
-|+-+ ||.||-+.+.--. ++..+.|.|..||+.+. +...+...|....+|.|..+|..
T Consensus 419 ~a~~~-d~~wyRa~I~~v~-----~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~L 480 (570)
T 3bdl_A 419 IAKFV-DGEWYRARVEKVE-----SPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAF 480 (570)
T ss_dssp EEECT-TSCEEEEEEEEEE-----ETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEE
T ss_pred EEEEC-CCCEEEEEEEEEc-----CCCeEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEE
Confidence 34434 9999998876221 14679999999999853 22223455665566999999974
No 145
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=66.43 E-value=1.4 Score=34.14 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=31.7
Q ss_pred ceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 133 AWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 133 AWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
.=|.|.-.|..|. ..|..+++|+..||+.+++.|-+..
T Consensus 20 ~eyeVEkIld~r~-~~g~~~YlVKWkGy~~~~~TWEp~e 57 (73)
T 2k1b_A 20 QVFAVESIRKKRV-RKGKVEYLVKWKGWPPKYSTWEPEE 57 (73)
T ss_dssp CCCCCSEEEEEEE-ETTEEEEEEECTTCCGGGCCEEETT
T ss_pred ceEEEEEEEEEEE-cCCcEEEEEEECCCCcccCeecchH
Confidence 3467888888885 5788999999999999999998764
No 146
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=66.42 E-value=2 Score=32.63 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=31.3
Q ss_pred eeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 134 WYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 134 WYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
=|.|.-.|.+|. ..|..+++|+..||+.+++-|-+..
T Consensus 13 ey~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~ 49 (73)
T 1ap0_A 13 EYVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEE 49 (73)
T ss_dssp CCEEEEEEEEEE-CSSSEEEEEEEESSSSCCCEEEETT
T ss_pred eEEEEEEEEEEE-eCCeEEEEEEECCCCCccCcEeeHH
Confidence 467888888885 5788999999999999999998764
No 147
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=65.06 E-value=2.4 Score=35.00 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCcCcccccccccccc
Q 018176 149 ADPEVQVRFAGFGAEEDEWVNIKRHVR 175 (360)
Q Consensus 149 Ge~evrVrF~gFg~EeDEWvnvk~rvR 175 (360)
|...+.|+|.|+..--||||... |++
T Consensus 57 ~~~~Y~VHY~GWn~rwDEWV~ed-Ril 82 (101)
T 3m9q_A 57 RFYEYKIHFQGWRPSYDRAVRAT-VLL 82 (101)
T ss_dssp EEEEEEEEETTSCGGGCEEECGG-GEE
T ss_pred CceEEEEEeCCCCcCceeecCHH-Hcc
Confidence 45789999999999999999864 444
No 148
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=64.52 E-value=2.9 Score=35.10 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=19.0
Q ss_pred CeEEEEecCCCcCcccccccc
Q 018176 151 PEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 151 ~evrVrF~gFg~EeDEWvnvk 171 (360)
++++|+|.|+..--||||...
T Consensus 59 ~~Y~VHY~GWn~~WDEWV~~d 79 (110)
T 3oa6_A 59 PEYLIHFNGWNRSWDRWAAED 79 (110)
T ss_dssp EEEEEEETTSCGGGCEEEEGG
T ss_pred cEEEEEECCcCcchhhccChh
Confidence 579999999999999999864
No 149
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=62.66 E-value=2.3 Score=32.31 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=32.5
Q ss_pred CceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 132 GAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 132 gAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
..-|.|.-.|.+|. ..|..++.|+..||+.+++.|.+..
T Consensus 11 ~~~y~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~ 49 (74)
T 2kvm_A 11 EQVFAVESIRKKRV-RKGKVEYLVKWKGWPPKYSTWEPEE 49 (74)
T ss_dssp CCCCCEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEETT
T ss_pred CccEEEEEEEEEEE-eCCcEEEEEEEcCCCCccCeEeeHH
Confidence 34578888888885 5788999999999999999998764
No 150
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.57 E-value=2.5 Score=32.18 Aligned_cols=39 Identities=15% Similarity=0.389 Sum_probs=32.4
Q ss_pred CceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 132 GAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 132 gAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
.-=|.|.-.|.+|. ..|..+++|+..||+.+++-|-+..
T Consensus 8 ~~ey~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~ 46 (74)
T 2d9u_A 8 EQVFAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEE 46 (74)
T ss_dssp CCCCCEEEEEEEEE-ETTEEEEEEEETTSCTTTCEEEEGG
T ss_pred CccEEEEEEEEEEE-eCCcEEEEEEECCCCCccCccccHH
Confidence 34468888889885 5688999999999999999997654
No 151
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=61.95 E-value=14 Score=31.39 Aligned_cols=83 Identities=14% Similarity=0.176 Sum_probs=45.2
Q ss_pred CeEEEEecCCCcCcccccc-cccccccCCCcccccccccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEE
Q 018176 151 PEVQVRFAGFGAEEDEWVN-IKRHVRQRSLPCEASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRF 229 (360)
Q Consensus 151 ~evrVrF~gFg~EeDEWvn-vk~rvR~RSiPlE~sEC~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~F 229 (360)
..++|+..+.+.+-++..+ +.+... ...|+.. -...++|+++++.- . ++..||-|.|++|.. -++
T Consensus 16 ~~f~vq~~~~~~~l~~l~~~l~~~~~-~~~~~~~--~~~~~~g~~c~a~~-~-~d~~wyRa~V~~v~~---------~~~ 81 (218)
T 2wac_A 16 LTFFAQSVESGSKLESLMSKLHADFQ-SNPPIAG--SYTPKRGDLVAAQF-T-LDNQWYRAKVERVQG---------SNA 81 (218)
T ss_dssp SEEEEEEGGGHHHHHHHHHHHHHHHH-HSCCCTT--SCCCCTTCEEEEEC-T-TTCCEEEEEEEEEET---------TEE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHh-hCCCCCC--CccCCcCCEEEEEE-C-CCCeEEEEEEEEecC---------CeE
Confidence 4578888765543222222 111111 1123322 23567999877533 2 245899999999953 256
Q ss_pred EEEEecCCccccccCcce
Q 018176 230 LVRYDHDQSEEIVPLRKV 247 (360)
Q Consensus 230 lVrw~Hdpsee~V~l~kv 247 (360)
.|.|....+.+.|++.++
T Consensus 82 ~V~~vDyG~~~~v~~~~l 99 (218)
T 2wac_A 82 TVLYIDYGNKETLPTNRL 99 (218)
T ss_dssp EEEETTTCCEEEEEGGGE
T ss_pred EEEEEecCCeEEEchHHc
Confidence 677765444445544443
No 152
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=59.45 E-value=3.6 Score=34.53 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=30.6
Q ss_pred eeEEeeccCCCceeehhhhhhccccC--CC--CCeEEEEecCCCcCccccccc
Q 018176 122 MEFEAKSARDGAWYDVSAFLAQRNFD--TA--DPEVQVRFAGFGAEEDEWVNI 170 (360)
Q Consensus 122 lEFEAkSa~DgAWYDV~~fL~~r~l~--tG--e~evrVrF~gFg~EeDEWvnv 170 (360)
+-|+.-.++..-||+..+. +-+.-. +| ..+++|+|.|+..--||||..
T Consensus 27 Lc~hgd~~k~~~lYeAKIl-~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~e 78 (110)
T 3m9p_A 27 LCFEPDPTKARVLYDAKIV-DVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAE 78 (110)
T ss_dssp EEECSCTTSCCCEEEEEEE-EEEEEECTTCCEEEEEEEEETTSCGGGCEEEEG
T ss_pred EEEcCCCCCCCCceeeEEE-EEEeccCcccccceEEEEEECCCCcchhhccCH
Confidence 4443322334678886644 222211 22 268999999999999999975
No 153
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=63.84 E-value=1.9 Score=34.15 Aligned_cols=39 Identities=23% Similarity=0.579 Sum_probs=28.2
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEec
Q 018176 188 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDH 235 (360)
Q Consensus 188 ~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~H 235 (360)
.+..|+.|+||+.+ .+|+|.|++|.... ..-.|.|-|.-
T Consensus 12 ~~~~Gekv~~~~~~----~~y~AkIl~i~~~~-----~~~~YyVHY~G 50 (85)
T 2lrq_A 12 LFVDGERVLCFHGP----LIYEAKVLKTKPDA-----TPVEYYIHYAG 50 (85)
Confidence 57799999999843 57999999998632 22346666654
No 154
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=57.92 E-value=20 Score=29.21 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=37.8
Q ss_pred cCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCcc--ccccCcce
Q 018176 190 LPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKV 247 (360)
Q Consensus 190 ~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpse--e~V~l~kv 247 (360)
.+|..|+|++. +-.||.|.|+++..+.. .+..-.|.|-|..-+.- |=|+..+|
T Consensus 16 ~~~e~vlc~~~---dg~~yeAeIl~ir~~~~--~~~~~~YYVHY~g~NkRlDEWV~~~RL 70 (92)
T 2bud_A 16 NPDKIYFIRRE---DGTVHRGQVLQSRTTEN--AAAPDEYYVHYVGLNRRLDGWVGRHRI 70 (92)
T ss_dssp CTTSCEEEECT---TSCEEEEEEEEEECTTT--CSSCCEEEEECSSSCTTTCEEEETTTE
T ss_pred CCCCEEEEEeC---CCCEEEEEEEEEeeccC--CCCCcEEEEEeCCcccccccccCHHHh
Confidence 46889999993 34799999999886432 23456799999877665 44555554
No 155
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=57.71 E-value=26 Score=33.44 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=62.6
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc------------------------------
Q 018176 122 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK------------------------------ 171 (360)
Q Consensus 122 lEFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk------------------------------ 171 (360)
|-+|+...++-.=|=|++...-. | .-|+|||.|+++.+|-|+++.
T Consensus 46 mklE~~D~~~~~~~~vAtV~~v~----G-~rl~l~~dg~~~~~dFW~~~~S~~IhPvGwc~~~g~~L~pP~~~~~~~f~W 120 (331)
T 1oz2_A 46 MKLEGIDPQHPSMYFILTVAEVC----G-YRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSW 120 (331)
T ss_dssp CEEEEEETTEEEEEEEEEEEEEE----T-TEEEEEETTSCGGGCEEEETTCTTEECTTHHHHHTCCEECCTTCCGGGCCH
T ss_pred CEEEEEeCCCCCcEEEEEEEEec----C-CEEEEEECCCCCCCCEEEcCCCCCcccCchHHhcCCcccCccccccccCcH
Confidence 55666655554433344433311 2 349999999999999998852
Q ss_pred --------------cccccCCCcccccccccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCC
Q 018176 172 --------------RHVRQRSLPCEASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQ 237 (360)
Q Consensus 172 --------------~rvR~RSiPlE~sEC~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdp 237 (360)
..|+.++.+ ...+.+++|..+-+....+ ..++|=|.|.+|... +|+|+||--.
T Consensus 121 ~~yL~~t~a~~aP~~lF~~~~~~---~~~~~F~vGmKLEavD~~n-p~~icvATV~~v~g~---------r~~v~~Dg~~ 187 (331)
T 1oz2_A 121 SQYLRSTRAQAAPKHLFVSQSHS---PPPLGFQVGMKLEAVDRMN-PSLVCVASVTDVVDS---------RFLVHFDNWD 187 (331)
T ss_dssp HHHHHHHTCCBCCGGGCSCSSCS---CCCTTCCTTCEEEEECTTS-TTCEEEEEEEEEETT---------EEEEEETTSC
T ss_pred HHHHHhcCCCCCChHHhcccCCC---CCccccccccEEEeccCCC-CCcEEEEEEEEeeCC---------EEEEEeCCCC
Confidence 113222111 1246688998888776554 568999999988632 6889987544
Q ss_pred c
Q 018176 238 S 238 (360)
Q Consensus 238 s 238 (360)
.
T Consensus 188 ~ 188 (331)
T 1oz2_A 188 D 188 (331)
T ss_dssp G
T ss_pred C
Confidence 3
No 156
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=57.09 E-value=3.7 Score=30.71 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=27.1
Q ss_pred hhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 137 VSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 137 V~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
|.-.|.+|. ..|..++.|+..||+.+++.|-+..
T Consensus 3 VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~ 36 (64)
T 3mts_A 3 VEYLCDYKK-IREQEYYLVKWRGYPDSESTWEPRQ 36 (64)
T ss_dssp EEEEEEEEE-CSSCEEEEEEETTSCGGGCEEEEGG
T ss_pred ceEEEEEEE-eCCeEEEEEEEecCCCcCCcEeEHH
Confidence 444566664 4688999999999999999997654
No 157
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=55.68 E-value=21 Score=31.38 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=38.3
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcceeecc
Q 018176 188 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRP 251 (360)
Q Consensus 188 ~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC~rP 251 (360)
.+++|+++++... +..||-|.|++|... -.+.|+|..-.+.+.|++.+++..|
T Consensus 65 ~~~~G~~c~a~~~---d~~wyRa~V~~~~~~--------~~~~V~~vDyGn~~~v~~~~lr~l~ 117 (246)
T 2hqx_A 65 APRRGEFCIAKFV---DGEWYRARVEKVESP--------AKIHVFYIDYGNREVLPSTRLGTLS 117 (246)
T ss_dssp CCCTTCEEEEECT---TSCEEEEEEEEEEET--------TEEEEEETTTCCEEEECGGGEECCC
T ss_pred CCCCCCEEEEEcC---CCCEEEEEEEEEcCC--------CeEEEEEEeCCCeEEEeHHHhhcCC
Confidence 4678997665332 457999999999652 2678888777777778777776654
No 158
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=53.07 E-value=38 Score=29.13 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=38.5
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcceeeccc
Q 018176 187 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPE 252 (360)
Q Consensus 187 ~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC~rP~ 252 (360)
..+++|+++|+. .. ++..||=|.|+++.... .+.|+|..=.+.+.|++.+++..|.
T Consensus 64 ~~~~~G~~c~a~-~~-~d~~wyRa~V~~~~~~~--------~~~V~~vDyG~~~~v~~~~l~~l~~ 119 (201)
T 4b9w_A 64 FKAEIGRPCCAF-FS-GDGNWYRALVKEILPSG--------NVKVHFVDYGNVEEVTTDQLQAILP 119 (201)
T ss_dssp CCCCTTCEEEEE-ET-TTTEEEEEEEEEECTTS--------CEEEEETTTCCEEEECGGGEEECCG
T ss_pred CCCCCCCEEEEE-EC-CCCeEEEEEEEEECCCC--------eEEEEEEccCCEEEEEHHHhccChH
Confidence 356789876653 22 35589999999986422 2567776666677888888876653
No 159
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=49.74 E-value=40 Score=26.27 Aligned_cols=50 Identities=16% Similarity=0.343 Sum_probs=37.8
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcce
Q 018176 188 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKV 247 (360)
Q Consensus 188 ~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kv 247 (360)
+...||.|++== +-+.+||-|+|.+|....+ ..+|.|.. .+++.++..+|
T Consensus 9 ~~~vgd~VmaRW--~Gd~~yYparI~Si~s~~~-------~Y~V~fKd-gT~e~L~~kDI 58 (66)
T 2l8d_A 9 KYADGEVVMGRW--PGSVLYYEVQVTSYDDASH-------LYTVKYKD-GTELALKESDI 58 (66)
T ss_dssp SSCSSCEEEEEC--TTSSCEEEEEEEEEETTTT-------EEEEEETT-SCEEEEEGGGE
T ss_pred EeecCCEEEEEc--CCCccceEEEEEEeccCCc-------eEEEEecC-CCEEeechhcc
Confidence 456899999855 4479999999999994444 58899988 66666655544
No 160
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=49.46 E-value=5.1 Score=30.35 Aligned_cols=39 Identities=8% Similarity=0.258 Sum_probs=33.6
Q ss_pred CceeehhhhhhccccCCCCCeEEEEecCCCcCccccccc
Q 018176 132 GAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI 170 (360)
Q Consensus 132 gAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnv 170 (360)
--||-|.-.|.+|.-..|..+..|+..|+..++.-|=+.
T Consensus 9 pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~ 47 (64)
T 2ee1_A 9 PEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESE 47 (64)
T ss_dssp CSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEET
T ss_pred CCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCC
Confidence 368889889999976789999999999999999988543
No 161
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=48.58 E-value=34 Score=26.00 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=23.8
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeeccc
Q 018176 187 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRH 220 (360)
Q Consensus 187 ~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~H 220 (360)
.++.+|+-||+-.. +-+||-+.|.+|...++
T Consensus 2 ~~f~~GedVLarws---DG~fYlGtI~~V~~~~~ 32 (58)
T 4hcz_A 2 PRLWEGQDVLARWT---DGLLYLGTIKKVDSARE 32 (58)
T ss_dssp CSCCTTCEEEEECT---TSCEEEEEEEEEETTTT
T ss_pred CccccCCEEEEEec---CCCEEeEEEEEEecCCC
Confidence 46789999996332 46899999999976654
No 162
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=45.07 E-value=47 Score=29.17 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=32.5
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCccee
Q 018176 187 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVC 248 (360)
Q Consensus 187 ~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC 248 (360)
..+.+|+++|+. .. ++..||=|.|+++.... .+.|+|..=.+.+.|++.+++
T Consensus 64 ~~~~~G~~c~a~-~~-~d~~WyRa~V~~~~~~~--------~~~V~~vDyGn~~~v~~~~l~ 115 (226)
T 4b9x_A 64 FKAEIGRPCCAF-FS-GDGNWYRALVKEILPSG--------NVKVHFVDYGNVEEVTTDQLQ 115 (226)
T ss_dssp CCCCTTCEEEEE-ET-TTTEEEEEEEEEECSSS--------EEEEECTTTCCEEEEEGGGEE
T ss_pred CCCCCCCEEEEE-EC-CCCeEEEEEEEEECCCC--------eEEEEEEecCCEEEEEHHHhc
Confidence 456789976653 22 35589999999986421 256666555555556555543
No 163
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.06 E-value=25 Score=27.49 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=28.0
Q ss_pred cccccccccCCceEEEeeecCCcceEeeEEEeeeeeccc
Q 018176 182 EASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRH 220 (360)
Q Consensus 182 E~sEC~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~H 220 (360)
-.+-|.++.+|+.|||-.. |-+||-+.|..|...++
T Consensus 3 ~g~~~~~f~eGqdVLarWs---DGlfYlGtV~kV~~~~~ 38 (68)
T 2e5p_A 3 SGSSGPRLWEGQDVLARWT---DGLLYLGTIKKVDSARE 38 (68)
T ss_dssp CCCCCCCCCTTCEEEEECT---TSSEEEEEEEEEETTTT
T ss_pred CCCCCcccccCCEEEEEec---CCcEEEeEEEEEecCCc
Confidence 3567899999999997432 46899999999986543
No 164
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=41.81 E-value=49 Score=25.89 Aligned_cols=52 Identities=13% Similarity=0.293 Sum_probs=39.3
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcceee
Q 018176 188 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCR 249 (360)
Q Consensus 188 ~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC~ 249 (360)
+...||.|++==- -+.+||-|+|.+|....+ ..+|.|.. .+++.++..+|=.
T Consensus 12 ~f~vgd~VmaRW~--Gd~~yYparItSits~~~-------~Y~VkfKd-gT~e~L~~kDIKp 63 (68)
T 2dig_A 12 KFADGEVVRGRWP--GSSLYYEVEILSHDSTSQ-------LYTVKYKD-GTELELKENDIKS 63 (68)
T ss_dssp SSCSSCEEEEECT--TTCCEEEEEEEEEETTTT-------EEEEECTT-SCEEEEETTTEEC
T ss_pred EeecCCEEEEEcc--CCccceEEEEEEeccCCc-------eEEEEecC-CCEEEechhcccc
Confidence 4568999997444 368999999999994444 58899988 7777776666533
No 165
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=41.04 E-value=40 Score=31.13 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=47.2
Q ss_pred cCCceEEEeeecCCcceEeeEEEeeeeecccC--CCCcceEEEEEEecCCccccccCcceeeccccch
Q 018176 190 LPGDLILCFQEGKDQALYFDAHVLDAQRRRHD--VRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDY 255 (360)
Q Consensus 190 ~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd--~rgCrC~FlVrw~Hdpsee~V~l~kvC~rP~~Dp 255 (360)
+.|++|-|-..+ .-.||-|+|++|.++.-. ..+=.+.|-|.|+..|..+.+.+.-.-.||.-..
T Consensus 4 ki~~~vd~~d~~--~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~irprar~ 69 (226)
T 3ask_A 4 KVNEYVDARDTN--MGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARART 69 (226)
T ss_dssp CTTCEEEEECTT--TCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEEECCCC
T ss_pred ccCceEEeeecC--CCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccccccccccc
Confidence 679999886543 468999999999995422 1011289999999999998888777777776544
No 166
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.37 E-value=36 Score=27.41 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=38.0
Q ss_pred ccccCCceEEE-eeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcceeeccccchHHH
Q 018176 187 VAVLPGDLILC-FQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQ 258 (360)
Q Consensus 187 ~~V~pGdlVcC-f~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC~rP~~Dp~L~ 258 (360)
...+.|+.|.+ |.+ +..||=|.|..+.+-. .+.|.|..=.+++.|++. |+||- |+.|+
T Consensus 20 ~~~k~g~~vaak~~d---~n~WyRakV~~v~~~~--------~veVl~~DyGn~~~V~~~--~LR~L-~~~l~ 78 (85)
T 2eqk_A 20 VKWENDMHCAVKIQD---KNQWRRGQIIRMVTDT--------LVEVLLYDVGVELVVNVD--CLRKL-EENLK 78 (85)
T ss_dssp CCCCSSCEEEEECSS---SCCEEEEEEEEECSSS--------EEEEECTTTCCEEEEETT--TEEEC-CHHHH
T ss_pred cCccCCCEEEEEeCC---CCeEEEEEEEEecCCC--------eEEEEEEccCCEEEEEcc--ccccC-CHHHh
Confidence 35678998775 553 4499999999987632 256666555566777766 56653 34443
No 167
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=39.13 E-value=19 Score=33.78 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=36.0
Q ss_pred ceeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCccccccc
Q 018176 121 FMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI 170 (360)
Q Consensus 121 ~lEFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnv 170 (360)
-|-+||...++-..+=|++..+-. +..|+|+|.|..++.|.|++.
T Consensus 147 GMKLEavD~~np~~icvATV~~v~-----g~rl~v~fDGw~~~~D~W~~~ 191 (265)
T 2r58_A 147 GQKLEAVDKKNPQLICCATVDAIK-----DDQIHVTFDGWRGAFDYWCNY 191 (265)
T ss_dssp TCEEEEECTTSTTCEEEEEEEEEE-----TTEEEEEETTSCGGGCEEEET
T ss_pred CcEEEeccCCCCCCEEEEEEEEec-----CCEEEEEeCCCCCcCCEEEEC
Confidence 378889888888777777665432 356999999999999999986
No 168
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.91 E-value=21 Score=27.49 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=22.1
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCC
Q 018176 125 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGF 160 (360)
Q Consensus 125 EAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gF 160 (360)
.|+-+ ||.||...+.-- +++..+.|.|.+|
T Consensus 17 lA~ws-Dg~~Y~A~I~~v-----~~~~~~~V~f~Dy 46 (74)
T 2equ_A 17 LARWT-DCRYYPAKIEAI-----NKEGTFTVQFYDG 46 (74)
T ss_dssp EEECS-SSSEEEEEEEEE-----STTSSEEEEETTS
T ss_pred EEECC-CCCEEEEEEEEE-----CCCCEEEEEEecC
Confidence 45655 999999887632 2335799999988
No 169
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=37.44 E-value=18 Score=31.34 Aligned_cols=21 Identities=24% Similarity=0.552 Sum_probs=18.9
Q ss_pred CeEEEEecCCCcCcccccccc
Q 018176 151 PEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 151 ~evrVrF~gFg~EeDEWvnvk 171 (360)
++++|+|.|+..--||||...
T Consensus 75 ~~Y~VHY~GWn~~WDEWV~e~ 95 (130)
T 3e9g_A 75 KCFFIHYQGWKSSWDEWVGYD 95 (130)
T ss_dssp CEEEEEETTSCGGGCEEEETT
T ss_pred ceEEEEeCCCCCChhhccCHh
Confidence 679999999999999999763
No 170
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=35.44 E-value=23 Score=32.56 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=36.7
Q ss_pred ceeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 121 FMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 121 ~lEFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
-|-+||.-.++-.++-|++..+-. +..|+|+|.|..++.|.|+...
T Consensus 175 GmKLEavD~~~p~~icvATV~~v~-----g~rl~v~fDgw~~~~D~W~~~d 220 (243)
T 2biv_A 175 GMKLEAIDKKNPYLICPATIGDVK-----GDEVHITFDGWSGAFDYWCKYD 220 (243)
T ss_dssp TCEEEEECTTSTTCEEEEEEEEEE-----TTEEEEEETTSCGGGCEEEETT
T ss_pred CCEEEEEccCCCCeEEEEEEEEec-----CCEEEEEECCCCCcCCEEEeCC
Confidence 378899988888888777665532 3569999999999999999874
No 171
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=33.90 E-value=20 Score=32.96 Aligned_cols=99 Identities=13% Similarity=0.203 Sum_probs=63.2
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc--------------------cccc------
Q 018176 122 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK--------------------RHVR------ 175 (360)
Q Consensus 122 lEFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk--------------------~rvR------ 175 (360)
|-+||.-.++-.-|=|++.+.-. | ..|+|||.|+.+.+|.|+++. +.+|
T Consensus 67 mKLEa~D~~~~~~~~vATV~~v~----g-~~l~l~~dG~d~~~DfW~~~~S~~I~PvGwc~~~g~~L~pP~g~~~~~f~W 141 (243)
T 2biv_A 67 MKLEARDPRNATSVCIATVIGIT----G-ARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSW 141 (243)
T ss_dssp CEEEEEETTEEEEEEEEEEEEEE----T-TEEEEEETTSCSSSCEEEETTCTTEECTTHHHHTTCCCCCCTTCSSCGGGH
T ss_pred CEEEEecCCCCCcEEEEEEEEEe----C-CEEEEEECCCCCCCCEeecCCCCccccChhHHhcCCccCCCcccccccchH
Confidence 66777766555445555554431 2 569999999999999998762 1222
Q ss_pred ----------cCCCcccccc-------cccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEec
Q 018176 176 ----------QRSLPCEASE-------CVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDH 235 (360)
Q Consensus 176 ----------~RSiPlE~sE-------C~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~H 235 (360)
....|.+-.. =+.+++|..|-+....+ ..++|=|.|.+|.-. ++.|+||.
T Consensus 142 ~~yL~~tl~ga~~aP~~lF~~~~~~~~~~~F~~GmKLEavD~~~-p~~icvATV~~v~g~---------rl~v~fDg 208 (243)
T 2biv_A 142 PMFLLKTLNGSEMASATLFKKEPPKPPLNNFKVGMKLEAIDKKN-PYLICPATIGDVKGD---------EVHITFDG 208 (243)
T ss_dssp HHHHHHHHTTCCBCCGGGSCCCCCCCSSCCCCTTCEEEEECTTS-TTCEEEEEEEEEETT---------EEEEEETT
T ss_pred HHHHHHhccCCccCCHHHhccCCCCCccccccCCCEEEEEccCC-CCeEEEEEEEEecCC---------EEEEEECC
Confidence 1223322111 14677888887766554 668899999999632 46677754
No 172
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=33.48 E-value=54 Score=25.43 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=25.8
Q ss_pred ccccccccCCceEEEeeecCCcceEeeEEEeeeeec
Q 018176 183 ASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRR 218 (360)
Q Consensus 183 ~sEC~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr 218 (360)
..+..+..+||.||+-- .|-+||-|.|..|...
T Consensus 8 ~~~~~~f~vGddVLA~w---tDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 8 KKPACKFEEGQDVLARW---SDGLFYLGTIKKINIL 40 (66)
T ss_dssp CCCCCCSCTTCEEEEEC---TTSCEEEEEEEEEETT
T ss_pred ccccccccCCCEEEEEE---ccCcEEEeEEEEEccC
Confidence 34556899999999643 3678999999999764
No 173
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=33.29 E-value=63 Score=32.28 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=36.7
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCCccccccCcceeecc
Q 018176 187 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRP 251 (360)
Q Consensus 187 ~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kvC~rP 251 (360)
..+++|+++++... +..||-|.|++|.. .-.+.|+|..-.+.+.|++.+|+..|
T Consensus 410 ~~~~~G~~c~a~~~---d~~wyRa~I~~v~~--------~~~~~V~fvDyGn~e~v~~~~Lr~l~ 463 (570)
T 3bdl_A 410 YAPRRGEFCIAKFV---DGEWYRARVEKVES--------PAKIHVFYIDYGNREVLPSTRLGTLS 463 (570)
T ss_dssp CCCCTTCEEEEECT---TSCEEEEEEEEEEE--------TTEEEEEETTTCCEEEECGGGEECCC
T ss_pred cCCCcCCEEEEEEC---CCCEEEEEEEEEcC--------CCeEEEEEEeCCCeEEEEHHHCccCC
Confidence 35779998776443 45799999999975 12456666665555667777665554
No 174
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=32.49 E-value=22 Score=33.29 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=65.2
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc--------------------cccc------
Q 018176 122 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK--------------------RHVR------ 175 (360)
Q Consensus 122 lEFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk--------------------~rvR------ 175 (360)
|-+||...++-.-|=|++...-. | ..|+|||.|+.+.+|-|+++. +.++
T Consensus 39 MKLEavDp~~~~~icvATV~~v~----g-~~l~l~~DG~d~~~DfW~~~~S~~I~PvGwc~~~g~~L~pP~g~~~~~f~W 113 (265)
T 2r58_A 39 MKLEALDPRNVTSTCIATVVGVL----G-SRLRLRLDGSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQPPLGFCMNASSW 113 (265)
T ss_dssp CEEEEEETTEEEEEEEEEEEEEE----T-TEEEEEETTSCSSCCEEEETTCTTEECTTHHHHTTCCCCCCTTCSSCGGGH
T ss_pred CEeEEecCCCCCCEEEEEEEEEe----C-CEEEEEeCCCCCcCCEeEeCCCCCeeccccHHhcCCcccCccccccCcCCH
Confidence 77888876666545555554421 2 369999999999999998852 1111
Q ss_pred ----------cCCCcccc-------cccccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEecCC
Q 018176 176 ----------QRSLPCEA-------SECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQ 237 (360)
Q Consensus 176 ----------~RSiPlE~-------sEC~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~Hdp 237 (360)
.+..|.+- ......++|-.+-+....+ ..++|=|.|.+|.. =+++|+||.-.
T Consensus 114 ~~yL~ktl~ga~~aP~~lF~~~~~~~~~~~F~vGMKLEavD~~n-p~~icvATV~~v~g---------~rl~v~fDGw~ 182 (265)
T 2r58_A 114 PGYLCKILNNAMVAPEEIFQPEPPEPEENLFKVGQKLEAVDKKN-PQLICCATVDAIKD---------DQIHVTFDGWR 182 (265)
T ss_dssp HHHHHHHHTTCCBCCGGGSCCCCCCCSSCCCCTTCEEEEECTTS-TTCEEEEEEEEEET---------TEEEEEETTSC
T ss_pred HHHHHHhhcCCccCCHHHhcccCCCCcccccccCcEEEeccCCC-CCCEEEEEEEEecC---------CEEEEEeCCCC
Confidence 12222211 2234688888888766554 56889999999962 25888886443
No 175
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=32.17 E-value=70 Score=29.57 Aligned_cols=102 Identities=14% Similarity=0.278 Sum_probs=62.0
Q ss_pred CCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccccccccCCCcccccccccccCCceEEEeeecCCcceEee
Q 018176 130 RDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQRSLPCEASECVAVLPGDLILCFQEGKDQALYFD 209 (360)
Q Consensus 130 ~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR~RSiPlE~sEC~~V~pGdlVcCf~eg~d~alyyD 209 (360)
+++-||-..+.- =...+.| .+..|+|.+ ..+..+..+ ++=--..|. =..|-.|.||++...+..+-.||=
T Consensus 20 ~~~~W~rg~v~~-I~~~~~g-~~YkVkF~~---~g~~ivs~~-hiA~~~~p~----~~~l~vG~RVVA~~~~~~~~~fY~ 89 (213)
T 3dlm_A 20 RTKTWHKGTLIA-IQTVGPG-KKYKVKFDN---KGKSLLSGN-HIAYDYHPP----ADKLYVGSRVVAKYKDGNQVWLYA 89 (213)
T ss_dssp TTSBEEEEEEEE-EEEETTE-EEEEEEESS---SCEEEECGG-GEEESSCCC----GGGCCTTCEEEEEEECSSCEEEEE
T ss_pred cCCcEEEEEEEE-EEECCCC-eEEEEEEcC---CCCEEeecc-eEEEecCCC----ccEEeEEEEEEEEecCCCCcceee
Confidence 478999876542 0000123 568899964 334555544 221111111 125889999998666666789998
Q ss_pred EEEeeeeecccCCCCcceEEEEEEecCCccccccCcce
Q 018176 210 AHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKV 247 (360)
Q Consensus 210 A~V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~kv 247 (360)
.+|.+.-...+-- +|+|.||.|-.. =|++.+|
T Consensus 90 GiVaE~p~~~N~~-----RyLVFFDDG~~~-Yv~~~~V 121 (213)
T 3dlm_A 90 GIVAETPNVKNKL-----RFLIFFDDGYAS-YVTQSEL 121 (213)
T ss_dssp EEEEECCCTTTTS-----CEEEEETTSCEE-EECGGGE
T ss_pred eEEEECCccCCCc-----eEEEEEeCCCcc-eecCceE
Confidence 8888876644332 899999988654 3444443
No 176
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=31.20 E-value=1.1e+02 Score=29.33 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=0.0
Q ss_pred ehhhhhhccccCCCCCeEEEEecCCCcCccccccc--------------------------------------------c
Q 018176 136 DVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI--------------------------------------------K 171 (360)
Q Consensus 136 DV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnv--------------------------------------------k 171 (360)
.|.....+| ++|||.|+++..|-|+++ .
T Consensus 58 tV~~v~G~r--------l~l~~dg~~~~~dFW~~~~S~~IhPvGwc~~~g~~L~pP~g~~~~~f~W~~yL~~~~a~~aP~ 129 (324)
T 3ut1_A 58 TVAEVCGYR--------IKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYLKTCKAQAAPK 129 (324)
T ss_dssp EEEEEETTE--------EEEEETTSCGGGCEEEETTCSSEECTTHHHHHTCCEECCTTCCTTTCCHHHHHHHTTCCBCCG
T ss_pred EEEEEECCE--------EEEEECCCCCCCCEEEeCCCCCeeccchhHhcCeeccCCCCCcCCCCCHHHHHHHhCcccCCh
Q ss_pred cccccCCCcccccccccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEEe
Q 018176 172 RHVRQRSLPCEASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYD 234 (360)
Q Consensus 172 ~rvR~RSiPlE~sEC~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw~ 234 (360)
..|+..+.+... +..++|-.+-+..-.+ ..+++=|.|.+| |.-+|+|+||
T Consensus 130 ~lF~~~~~~~~~---~~F~vGMKLEavDp~~-p~~icvATV~~V---------~g~~l~v~~D 179 (324)
T 3ut1_A 130 SLFENQNITVIP---SGFRVGMKLEAVDKKN-PSFICVATVTDM---------VDNRFLVHFD 179 (324)
T ss_dssp GGCTTTTCCCCC---CSCCTTCEEEEEETTE-EEEEEEEEEEEE---------ETTEEEEEET
T ss_pred HHcccCCCccCc---cccccCCEEEEecCCC-CCcEEEEEEEEE---------ECCEEEEEEC
No 177
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=30.26 E-value=87 Score=26.33 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=29.5
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEE-ecCCccc
Q 018176 188 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRY-DHDQSEE 240 (360)
Q Consensus 188 ~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVrw-~Hdpsee 240 (360)
.+++|+++++.. . ++..||-|.|.++... + .+.|+| |.|+.+.
T Consensus 47 ~~~~G~~c~A~~-~-~d~~wyRa~I~~~~~~-----~---~~~V~fvDyGn~~~ 90 (169)
T 3ntk_A 47 DLKEGALCVAQF-P-EDEVFYRAQIRKVLDD-----G---KCEVHFIDFGNNAV 90 (169)
T ss_dssp CCCTTCEEEEEE-T-TTTEEEEEEEEEECST-----T---CEEEEETTTTEEEE
T ss_pred CCCCCCEEEEEE-C-CCCcEEEEEEEEECCC-----C---EEEEEEEecCCeEE
Confidence 678999877633 2 2568999999998652 2 456666 5566655
No 178
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=30.15 E-value=1.6e+02 Score=29.27 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=0.0
Q ss_pred eeEEeeccCC-----CceeehhhhhhccccCCCCCeEEEEecCCCc--Cccccccc--------------cccccc----
Q 018176 122 MEFEAKSARD-----GAWYDVSAFLAQRNFDTADPEVQVRFAGFGA--EEDEWVNI--------------KRHVRQ---- 176 (360)
Q Consensus 122 lEFEAkSa~D-----gAWYDV~~fL~~r~l~tGe~evrVrF~gFg~--EeDEWvnv--------------k~rvR~---- 176 (360)
|-+|....++ --|-..=+.+.+-. |++||.||++ ..|=|+|+ .+.+++
T Consensus 47 mklEv~~~~~~~~~~~yWvA~V~~~~G~r-------llLry~G~~~d~~~DFW~~~~s~~ihpvGwc~~~~~~l~PP~~i 119 (437)
T 3feo_A 47 VRVEVPNTDCSLPTKVFWIAGIVKLAGYN-------ALLRYEGFENDSGLDFWCNICGSDIHPVGWCAASGKPLVPPRTI 119 (437)
T ss_dssp CEEEEECSCC----CCEEEEEEEEEETTE-------EEEEETTCTTCCTTCEEEETTSTTCEETTHHHHHTCCBCCCGGG
T ss_pred CEEEEecCCCCCCcCceEEEEEeeecceE-------EEEEecccCCCCCCCcceeCCCccccccccHhhcCCEecCCccc
Q ss_pred ------------------CCCcccccc------cccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEE
Q 018176 177 ------------------RSLPCEASE------CVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVR 232 (360)
Q Consensus 177 ------------------RSiPlE~sE------C~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~Hd~rgCrC~FlVr 232 (360)
+++|.+-.+ ...+++|-+|-+..... -..|+=|.|.+| |.-+++||
T Consensus 120 ~~~~~~W~~yL~~~ltga~t~P~~~f~~~~~~~~~~F~~GmkLEv~d~~~-~~~~~vAtV~~v---------~G~rl~Lr 189 (437)
T 3feo_A 120 QHKYTNWKAFLVKRLTGAKTLPPDFSQKVSESMQYPFKPCMRVEVVDKRH-LCRTRVAVVESV---------IGGRLRLV 189 (437)
T ss_dssp TTTCSCHHHHHHHHHTTCCCCCTTHHHHHHHHTCCSCCTTEEEEEEETTE-EEEEEEEEEEEE---------ETTEEEEE
T ss_pred ccccccHHHHHHHHhhcCccCChhHhhccccccCCCCCCCCEEEEecCCC-CcceEEEEEEEE---------ECCEEEEE
Q ss_pred Ee
Q 018176 233 YD 234 (360)
Q Consensus 233 w~ 234 (360)
|+
T Consensus 190 y~ 191 (437)
T 3feo_A 190 YE 191 (437)
T ss_dssp ES
T ss_pred Ee
No 179
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=29.23 E-value=46 Score=27.33 Aligned_cols=32 Identities=34% Similarity=0.536 Sum_probs=23.3
Q ss_pred EeeeeecccCCCCcceEEEEEEecCCccccccCcc
Q 018176 212 VLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRK 246 (360)
Q Consensus 212 V~~VqRr~Hd~rgCrC~FlVrw~Hdpsee~V~l~k 246 (360)
|..|+-+.|+ -+.||.|+||= |.+++..+.+|
T Consensus 63 i~~i~V~~h~-~~srCFfvvR~--DGt~~DFSy~K 94 (104)
T 2k0m_A 63 VRNFEVRSAD-YGTQCFWILRT--DGSEERFSYKK 94 (104)
T ss_dssp EEEEEEEESS-SSCEEEEEEET--TSCEEECCGGG
T ss_pred cceEEEecCC-CCCcEEEEEEe--CCCeeeeeHHH
Confidence 6677777784 48999999964 56777666554
No 180
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=29.09 E-value=39 Score=29.17 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.9
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeee
Q 018176 188 AVLPGDLILCFQEGKDQALYFDAHVLDA 215 (360)
Q Consensus 188 ~V~pGdlVcCf~eg~d~alyyDA~V~~V 215 (360)
...+|..|+||+.+. -|.|.|++|
T Consensus 7 ~f~~gE~VlcfHg~~----~YeAKIl~i 30 (130)
T 3e9g_A 7 EFALGGRCLAFHGPL----MYEAKILKI 30 (130)
T ss_dssp CCCTTCEEEEEETTE----EEEEEEEEE
T ss_pred cccCCCEEEEEeCCc----ceeeEEEEe
Confidence 567999999999744 799999999
No 181
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.05 E-value=31 Score=27.79 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=32.7
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccccccccC
Q 018176 122 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQR 177 (360)
Q Consensus 122 lEFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk~rvR~R 177 (360)
+---|+.+.|++||-..+.-- .++..+.|.|-.||+++ -|++. ++|+.
T Consensus 26 ~~vaak~~d~n~WyRakV~~v-----~~~~~veVl~~DyGn~~--~V~~~-~LR~L 73 (85)
T 2eqk_A 26 MHCAVKIQDKNQWRRGQIIRM-----VTDTLVEVLLYDVGVEL--VVNVD-CLRKL 73 (85)
T ss_dssp CEEEEECSSSCCEEEEEEEEE-----CSSSEEEEECTTTCCEE--EEETT-TEEEC
T ss_pred CEEEEEeCCCCeEEEEEEEEe-----cCCCeEEEEEEccCCEE--EEEcc-ccccC
Confidence 344577778889998886533 23455999999999875 34544 45543
No 182
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=27.26 E-value=14 Score=26.80 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=26.7
Q ss_pred ehhhhhhccccCCCCC-eEEEEecCCCcCcccccccc
Q 018176 136 DVSAFLAQRNFDTADP-EVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 136 DV~~fL~~r~l~tGe~-evrVrF~gFg~EeDEWvnvk 171 (360)
.|.-.|.+|....|.. ++.|+..|| +++-|-+..
T Consensus 2 ~VE~Ild~r~~~~g~~~~YlVKWkgy--~~~TWEp~~ 36 (54)
T 1x3p_A 2 VAESVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQD 36 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSSS--SSCSCSTTC
T ss_pred eEEEEEEEEEcCCCcEEEEEEEECCC--CcCCccchH
Confidence 4566788886555888 999999999 788897665
No 183
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.94 E-value=19 Score=27.10 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=31.6
Q ss_pred CCceeehhhhhhcccc---CCC--CCeEEEEecCCCcCccccccc
Q 018176 131 DGAWYDVSAFLAQRNF---DTA--DPEVQVRFAGFGAEEDEWVNI 170 (360)
Q Consensus 131 DgAWYDV~~fL~~r~l---~tG--e~evrVrF~gFg~EeDEWvnv 170 (360)
+--||.|.-.|.+|.. .+| ..++.|+..|++.++.-|=+.
T Consensus 8 ~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~ 52 (68)
T 2epb_A 8 NPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELE 52 (68)
T ss_dssp CSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEET
T ss_pred CCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccc
Confidence 3458888888888753 246 578999999999999999654
No 184
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=25.41 E-value=41 Score=33.64 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=38.1
Q ss_pred ceeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 121 FMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 121 ~lEFEAkSa~DgAWYDV~~fL~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
-|-+||.--++-...=|++..+-. +..|+|+|.|..++.|+|+++.
T Consensus 380 gmkLEAvD~~np~~icvATV~~v~-----~~~~~i~fDgw~~~~d~w~~~~ 425 (447)
T 3h6z_A 380 GMSLECADLMDPRLVCVATVARVV-----GRLLKVHFDGWTDEYDQWLDCE 425 (447)
T ss_dssp TCEEEEECTTSTTCEEEEEEEEEE-----TTEEEEECTTSCGGGCEEEETT
T ss_pred CCEEEeecCCCCCcEEEEEEeEec-----CCEEEEEeCCCCCcCCEEEecC
Confidence 488999988898888888775532 3679999999999999999874
No 185
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=22.99 E-value=36 Score=23.40 Aligned_cols=22 Identities=32% Similarity=0.702 Sum_probs=18.0
Q ss_pred cccccccCCceEE--EeeecCCcceEe
Q 018176 184 SECVAVLPGDLIL--CFQEGKDQALYF 208 (360)
Q Consensus 184 sEC~~V~pGdlVc--Cf~eg~d~alyy 208 (360)
..|..-++||+-| |..||+ +||
T Consensus 9 ercpnpregdwcchkcvpegk---rfy 32 (36)
T 4b2u_A 9 ERCPNPREGDWCCHKCVPEGK---RFY 32 (36)
T ss_dssp SBCCCGGGCCSSSSEEEEETT---EEE
T ss_pred ccCcCCCccCeeeecccccCc---eee
Confidence 4689999999988 888887 555
No 186
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=21.75 E-value=94 Score=24.92 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=23.8
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeeccc
Q 018176 187 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRH 220 (360)
Q Consensus 187 ~~V~pGdlVcCf~eg~d~alyyDA~V~~VqRr~H 220 (360)
.++..|+.||+-. .|-+||-+.|.+|...++
T Consensus 25 ~~f~eGeDVLarw---sDGlfYLGTI~kV~~~~e 55 (79)
T 2m0o_A 25 PRLWEGQDVLARW---TDGLLYLGTIKKVDSARE 55 (79)
T ss_dssp CCCCTTCEEEBCC---TTSCCCEEEEEEEETTTT
T ss_pred ceeccCCEEEEEe---cCCCEEeEEEEEeccCCC
Confidence 4788999999633 356899999999876644
No 187
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=21.42 E-value=41 Score=27.93 Aligned_cols=22 Identities=36% Similarity=0.735 Sum_probs=15.6
Q ss_pred hHHHHHhhhhhhhhhcccCCCC
Q 018176 41 QVWNWFQNRRYAIRAKSIKSPG 62 (360)
Q Consensus 41 QV~~WFQnrr~~~~~k~~~~p~ 62 (360)
-+|-||+||--++.+..-..|.
T Consensus 18 liwlwfrnrpaaqvasnwegpp 39 (117)
T 1w8x_P 18 LIWLWFRNRPAAQVASNWEGPP 39 (117)
T ss_dssp HHHHHHHHTTCSCSSCTTCCCC
T ss_pred HHHHHHccChHHHHhhcCCCCC
Confidence 4899999997776655544444
No 188
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=20.88 E-value=32 Score=29.00 Aligned_cols=38 Identities=13% Similarity=0.393 Sum_probs=31.7
Q ss_pred ceeehhhh------hhccccCCCCCeEEEEecCCCcCcccccccc
Q 018176 133 AWYDVSAF------LAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 171 (360)
Q Consensus 133 AWYDV~~f------L~~r~l~tGe~evrVrF~gFg~EeDEWvnvk 171 (360)
.+|.|.-. |..|. ..|+.+..|+..||+..++-|-+..
T Consensus 35 ~~Y~VE~i~Dp~~ildkR~-~~g~~eYlVKWkG~s~~~nTWEp~e 78 (115)
T 2b2y_C 35 TIYAVEADGDPNAGFEKNK-EPGEIQYLIKWKGWSHIHNTWETEE 78 (115)
T ss_dssp SHHHHHHHCBTTTTCCTTS-SSCEEEEEEEETTSCGGGCEEECHH
T ss_pred ceEEEeecCCcccccccce-eCCcEEEEEEECCCCchhcccCCHH
Confidence 46778775 88874 7899999999999999999996653
Done!