Query 018177
Match_columns 360
No_of_seqs 22 out of 24
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 06:47:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00170 cpcA phycocyanin alph 68.3 3.2 6.9E-05 38.0 1.8 18 277-294 66-83 (162)
2 TIGR01338 phycocy_alpha phycoc 66.0 3.9 8.5E-05 37.3 1.9 18 277-294 65-82 (161)
3 cd03572 ENTH_epsin_related ENT 57.1 12 0.00027 32.6 3.3 54 221-304 64-120 (122)
4 PF11707 Npa1: Ribosome 60S bi 51.1 1.3E+02 0.0028 29.4 9.5 132 185-338 129-300 (330)
5 PF07216 LcrG: LcrG protein; 47.0 29 0.00062 29.8 3.8 39 23-63 10-48 (93)
6 COG4114 FhuF Uncharacterized F 46.5 68 0.0015 31.7 6.7 71 82-156 59-132 (251)
7 CHL00172 cpeB phycoerythrin be 37.9 26 0.00057 32.6 2.5 23 276-299 65-87 (177)
8 PRK04330 hypothetical protein; 37.1 24 0.00051 29.9 1.9 41 266-306 7-47 (88)
9 COG5186 PAP1 Poly(A) polymeras 35.2 26 0.00057 37.0 2.2 50 272-328 221-272 (552)
10 CHL00173 cpeA phycoerythrin al 33.2 37 0.0008 31.1 2.6 22 277-299 66-87 (164)
11 PRK10647 ferric iron reductase 31.1 47 0.001 32.4 3.1 69 81-154 69-142 (262)
12 TIGR01339 phycocy_beta phycocy 29.5 36 0.00078 31.4 2.0 22 277-299 64-85 (170)
13 COG1698 Uncharacterized protei 29.5 38 0.00082 29.1 1.9 25 284-308 29-53 (93)
14 PF03685 UPF0147: Uncharacteri 29.4 29 0.00063 29.2 1.2 39 268-306 6-44 (85)
15 COG3687 Predicted metal-depend 29.2 50 0.0011 33.0 3.0 37 275-313 21-57 (280)
16 PF04648 MF_alpha: Yeast matin 28.7 29 0.00062 20.4 0.7 7 279-285 7-13 (13)
17 PF12491 ApoB100_C: Apolipopro 28.4 40 0.00088 26.8 1.8 44 81-127 9-52 (58)
18 PF02338 OTU: OTU-like cystein 26.1 94 0.002 24.9 3.6 33 75-108 2-38 (121)
19 cd06845 Bcl-2_like Apoptosis r 24.9 72 0.0016 27.3 2.9 81 10-107 33-124 (144)
20 PRK02866 cyanate hydratase; Va 24.1 1.6E+02 0.0034 27.0 4.9 47 51-104 58-105 (147)
21 PF08628 Nexin_C: Sorting nexi 23.6 1.8E+02 0.0039 23.9 4.8 72 228-319 21-108 (113)
22 PF00043 GST_C: Glutathione S- 22.0 1.5E+02 0.0033 22.1 3.9 38 218-255 46-92 (95)
23 TIGR02573 LcrG_PcrG type III s 21.1 1.2E+02 0.0026 26.0 3.3 38 23-62 7-44 (90)
24 PF12464 Mac: Maltose acetyltr 20.7 96 0.0021 22.3 2.4 28 21-48 25-53 (55)
25 cd03562 CID CID (CTD-Interacti 20.4 2.8E+02 0.0061 22.5 5.3 80 14-113 33-112 (114)
26 PF14724 mit_SMPDase: Mitochon 20.2 46 0.00099 37.2 0.9 27 259-285 58-87 (765)
27 CHL00086 apcA allophycocyanin 20.1 80 0.0017 28.7 2.3 22 277-299 65-86 (161)
28 PF11880 DUF3400: Domain of un 20.0 61 0.0013 24.6 1.3 28 224-254 8-35 (45)
29 cd06931 NR_LBD_HNF4_like The l 20.0 1.3E+02 0.0027 27.2 3.5 71 232-302 119-205 (222)
No 1
>CHL00170 cpcA phycocyanin alpha subunit; Reviewed
Probab=68.32 E-value=3.2 Score=37.97 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=15.9
Q ss_pred cCCCCCCCCCChHHHHHH
Q 018177 277 FTSPGGPMYPTRAVRHAA 294 (360)
Q Consensus 277 fTsPGgP~Y~tR~VR~aA 294 (360)
+|+|||++|++|.+|.||
T Consensus 66 l~~pgGn~y~~~~~~~aa 83 (162)
T CHL00170 66 TTQMPGPTYASSAIGKAK 83 (162)
T ss_pred cCCCCCCccccchhHHHH
Confidence 599999999999987765
No 2
>TIGR01338 phycocy_alpha phycocyanin, alpha subunit. This model excludes the closely related phycoerythrocyanin alpha subunit.
Probab=66.02 E-value=3.9 Score=37.27 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.5
Q ss_pred cCCCCCCCCCChHHHHHH
Q 018177 277 FTSPGGPMYPTRAVRHAA 294 (360)
Q Consensus 277 fTsPGgP~Y~tR~VR~aA 294 (360)
+|+|||++|++|.+|.+|
T Consensus 65 ~~~pgGn~y~~~~~~~aa 82 (161)
T TIGR01338 65 TTQMNGPNYASTATGKAK 82 (161)
T ss_pred cCCCCCCCccchhhHHHH
Confidence 599999999999986655
No 3
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=57.11 E-value=12 Score=32.63 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=37.6
Q ss_pred ccccCCcchhHHHHHHHhhhhcchhHHHHHHHHhhhhcCCccccchhhhHhhhhhccCCCCCC---CCCChHHHHHHHHh
Q 018177 221 FLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGP---MYPTRAVRHAAWDA 297 (360)
Q Consensus 221 ~l~gg~aD~FV~ev~dqL~~iK~E~vLlhYL~~~~~lkg~eLr~tT~~RLqacLYSfTsPGgP---~Y~tR~VR~aA~~~ 297 (360)
++++.+..-|++++.+++..|| .|+-++| |=.| .-+-..||.+|.++
T Consensus 64 ~l~~~G~~~f~~~~~~~~~~Ik----------~~~~f~g--------------------~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 64 HLCEKGNSDFKRELQRNSAQIR----------ECANYKG--------------------PPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHhhCCHHHHHHHHHhHHHHH----------HHHHcCC--------------------CCCcccCcchhHHHHHHHHHH
Confidence 3455566778888888865554 3555555 3344 44567799999999
Q ss_pred hhhhcCC
Q 018177 298 LDFLFPV 304 (360)
Q Consensus 298 LD~LFP~ 304 (360)
++++|..
T Consensus 114 ~~~if~~ 120 (122)
T cd03572 114 IKAIFSY 120 (122)
T ss_pred HHHHhcc
Confidence 9999964
No 4
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=51.07 E-value=1.3e+02 Score=29.40 Aligned_cols=132 Identities=21% Similarity=0.310 Sum_probs=79.5
Q ss_pred cchhhHHHHHHhHhhcccChhhHHHHHhhCCCCCCcccccCCcchhHHHHHHHhhhhcchhHHHHHHHHhh--hhcCCcc
Q 018177 185 QVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIK--VLQGMEL 262 (360)
Q Consensus 185 qarrdl~~ils~F~fyYe~~d~L~~fl~~fp~~~n~~l~gg~aD~FV~ev~dqL~~iK~E~vLlhYL~~~~--~lkg~eL 262 (360)
.-|.-+...+-.|+-+ .+..-..+++.+-+. +..+.+.|.+ +..+++...|+-++ |+++-.+
T Consensus 129 siR~~fI~F~Lsfl~~-~~~~~~~~lL~~~~~--------------~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl~~~~v 192 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSS-GDPELKRDLLSQKKL--------------MSALFKGLRK-DPPETVILILETLKDKVLKDSSV 192 (330)
T ss_pred CHHHHHHHHHHHHHcc-CCHHHHHHHHHcCch--------------HHHHHhcccC-CCHHHHHHHHHHHHHHhccCCCC
Confidence 3365566655555543 344555666665222 4455555555 55555555555543 5555555
Q ss_pred ccchhh---------hHhhhhhccCCCCCCCCCChHHHHHHHHhhhh---------hcCC-CCccH--------------
Q 018177 263 RMTTST---------RLKTCLYSFTSPGGPMYPTRAVRHAAWDALDF---------LFPV-GQYPR-------------- 309 (360)
Q Consensus 263 r~tT~~---------RLqacLYSfTsPGgP~Y~tR~VR~aA~~~LD~---------LFP~-Gr~~R-------------- 309 (360)
+.+|+. +|.+ ||+...+ -..++|+.+|-+-|=. .||+ |=|+|
T Consensus 193 ~r~~K~~~fn~~~L~~l~~-Ly~~~~~----~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~ 267 (330)
T PF11707_consen 193 SRSTKCKLFNEWTLSQLAS-LYSRDGE----DEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKS 267 (330)
T ss_pred ChhhhhhhcCHHHHHHHHH-HhcccCC----cccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCC
Confidence 555554 4666 9988887 5567799999988865 4663 33333
Q ss_pred -----HHHHHHHHhhccccCcchhHHHHHHHHHH
Q 018177 310 -----HVISLFFRLLYPWCWPSSCWNFIMSWLKA 338 (360)
Q Consensus 310 -----h~VslfFRLLhPyywp~S~wn~i~~~ik~ 338 (360)
.++.-+-+.|.||.-+. -.+-++++.++
T Consensus 268 ~~~~Nk~L~~ll~~lkp~e~~~-q~~Lvl~Il~~ 300 (330)
T PF11707_consen 268 FKINNKLLLNLLKKLKPWEDDR-QQELVLKILKA 300 (330)
T ss_pred CCcccHHHHHHHHHCCCCccHH-HHHHHHHHHHH
Confidence 56677777899999773 45555555554
No 5
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=47.00 E-value=29 Score=29.78 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhhhhhhhchHHHHhhhcC
Q 018177 23 IEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSG 63 (360)
Q Consensus 23 i~kkL~~Al~s~~qr~~ll~eLFaDial~vDdra~~~i~~~ 63 (360)
+.++-..||+...+|..|++|+.+++ -|++.+-+.+++.
T Consensus 10 ti~~AE~AI~dsd~R~~llqEm~~gL--g~~p~ag~lLf~~ 48 (93)
T PF07216_consen 10 TIEQAELAIRDSDHRNDLLQEMLEGL--GLGPVAGELLFGG 48 (93)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc--CCChhHHHHHhcC
Confidence 34556789999999999999999998 6788888888766
No 6
>COG4114 FhuF Uncharacterized Fe-S protein [General function prediction only]
Probab=46.53 E-value=68 Score=31.66 Aligned_cols=71 Identities=20% Similarity=0.343 Sum_probs=41.5
Q ss_pred HHHHHHHhh-hCCcchhhHHHHHHHHhhhhhHHHHHHHHHHHHHhhHhcCCcchhhhhhhHHhhcccc--eeeeeccc
Q 018177 82 YDVLADHYV-RMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATN--VFWIDIQT 156 (360)
Q Consensus 82 Y~vLA~yy~-~vPe~~~~~l~L~~qLwsq~~~~~IfalLF~~WLfe~~l~~~e~~lr~~n~lv~GAtn--lFW~Di~s 156 (360)
-++-+|||+ ++|..-+. .-..+||||-|++.+=-=+.+--++..+.=. +.-.|.-+.-+-.+. .||.|+.-
T Consensus 59 ~~~y~dh~y~d~~~~pr~--k~laSlwSqwY~glmtpP~mlal~l~~qal~--~~~en~~v~fhetgr~~~f~~~~~~ 132 (251)
T COG4114 59 LAVYSDHYYGDQPGMPRE--KALASLWSQWYFGLMTPPLMLALLLQEQALD--VSPENFHVEFHETGRPACFYVDVCE 132 (251)
T ss_pred HHhhhhhhhccCCCCchH--HHHHHHHHHHHHHhhhHHHHHHHHHhhhccC--CChHHeEEEeccCCCcceEEeeecc
Confidence 345566777 55555444 5678999999998775444444444333222 233444444443334 89999853
No 7
>CHL00172 cpeB phycoerythrin beta subunit; Provisional
Probab=37.89 E-value=26 Score=32.64 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=18.2
Q ss_pred ccCCCCCCCCCChHHHHHHHHhhh
Q 018177 276 SFTSPGGPMYPTRAVRHAAWDALD 299 (360)
Q Consensus 276 SfTsPGgP~Y~tR~VR~aA~~~LD 299 (360)
..|+|||++|++|. ..|.|+=+|
T Consensus 65 ~l~~pGGn~y~~~r-~aaClRD~~ 87 (177)
T CHL00172 65 GLISPGGNCYTNRR-MAACLRDGE 87 (177)
T ss_pred CCCCCCCCCCcHHH-HHHHHHHHH
Confidence 36999999999998 666666554
No 8
>PRK04330 hypothetical protein; Provisional
Probab=37.12 E-value=24 Score=29.89 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=32.2
Q ss_pred hhhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 018177 266 TSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 306 (360)
Q Consensus 266 T~~RLqacLYSfTsPGgP~Y~tR~VR~aA~~~LD~LFP~Gr 306 (360)
...++|.|++=+..--.=.=+||-||+||-++.+.|-=.|.
T Consensus 7 ~e~~ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~~ 47 (88)
T PRK04330 7 NEEKIKQAIQMLEEIINDTSVPRNIRRAATEAKEILLNEEE 47 (88)
T ss_pred hHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCcCc
Confidence 45567777777766666667899999999999999976554
No 9
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]
Probab=35.19 E-value=26 Score=36.96 Aligned_cols=50 Identities=24% Similarity=0.634 Sum_probs=33.3
Q ss_pred hhhhc--cCCCCCCCCCChHHHHHHHHhhhhhcCCCCccHHHHHHHHHhhccccCcchh
Q 018177 272 TCLYS--FTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSC 328 (360)
Q Consensus 272 acLYS--fTsPGgP~Y~tR~VR~aA~~~LD~LFP~Gr~~Rh~VslfFRLLhPyywp~S~ 328 (360)
.|.|. |--|||-++.-=-- -.=.|+|. .-|--.|+=||++||-|.||.-+
T Consensus 221 RavYaN~~GfpGGVAwam~VA------RiCQLYPN-A~S~vIv~kFF~ils~WnWPqPv 272 (552)
T COG5186 221 RAVYANPYGFPGGVAWAMCVA------RICQLYPN-ASSFVIVCKFFEILSSWNWPQPV 272 (552)
T ss_pred hhhhccccCCcchHHHHHHHH------HHHhhccC-cchHhHHHHHHHHHHhcCCCCCe
Confidence 57775 44577743321111 13469994 55667899999999999999753
No 10
>CHL00173 cpeA phycoerythrin alpha subunit; Provisional
Probab=33.15 E-value=37 Score=31.15 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=17.8
Q ss_pred cCCCCCCCCCChHHHHHHHHhhh
Q 018177 277 FTSPGGPMYPTRAVRHAAWDALD 299 (360)
Q Consensus 277 fTsPGgP~Y~tR~VR~aA~~~LD 299 (360)
+|.|||+.|++|. ..|.|+-+|
T Consensus 66 l~~pGG~~y~~~r-~aaC~RD~~ 87 (164)
T CHL00173 66 LKNPGEAGDSQEK-VNKCYRDVD 87 (164)
T ss_pred CCCCCCCCccchH-HHHHHHHHH
Confidence 6999999999998 666676554
No 11
>PRK10647 ferric iron reductase involved in ferric hydroximate transport; Provisional
Probab=31.12 E-value=47 Score=32.45 Aligned_cols=69 Identities=25% Similarity=0.450 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhCCcchhhHHHHHHHHhhhhhHHH-H----HHHHHHHHHhhHhcCCcchhhhhhhHHhhcccceeeeec
Q 018177 81 FYDVLADHYVRMPESGQRILDLIVQLWSQLFVSH-I----FALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDI 154 (360)
Q Consensus 81 fY~vLA~yy~~vPe~~~~~l~L~~qLwsq~~~~~-I----falLF~~WLfe~~l~~~e~~lr~~n~lv~GAtnlFW~Di 154 (360)
.=+..+++|+..-+.+.+-..-+.+||+|-|++. + ++++-+..-+....++--+.+. -+|--..||+|.
T Consensus 69 lL~~y~~~~~~~~~~~~~~~ral~SlWsk~Yf~ll~pp~l~a~l~~~~~L~l~~~~~~v~~~-----~~G~P~~~~~~~ 142 (262)
T PRK10647 69 LLAVYSDHIYRNQPTLKRENKPLYSLWAQWYIGLMVPPLMLALLTQPQALDVSPEHFHVEFH-----ETGRAACFWYDV 142 (262)
T ss_pred HHHHHHHHhcCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceEEEeC-----CCCCcceEEecc
Confidence 4445666776655556777788999999998887 3 3333333332222222111111 136677999999
No 12
>TIGR01339 phycocy_beta phycocyanin, beta subunit. This model excludes the closely related phycoerythrocyanin beta subunit.
Probab=29.49 E-value=36 Score=31.44 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=16.8
Q ss_pred cCCCCCCCCCChHHHHHHHHhhh
Q 018177 277 FTSPGGPMYPTRAVRHAAWDALD 299 (360)
Q Consensus 277 fTsPGgP~Y~tR~VR~aA~~~LD 299 (360)
.|+|||++|+||. ..|.|+=+|
T Consensus 64 l~~pGG~~y~~~r-~~aClRD~~ 85 (170)
T TIGR01339 64 LIAPGGNAYTSRR-MAACLRDME 85 (170)
T ss_pred CCCCCCCCCcHHH-HHHHHhhcc
Confidence 4799999999998 556666444
No 13
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.46 E-value=38 Score=29.09 Aligned_cols=25 Identities=32% Similarity=0.330 Sum_probs=21.1
Q ss_pred CCCChHHHHHHHHhhhhhcCCCCcc
Q 018177 284 MYPTRAVRHAAWDALDFLFPVGQYP 308 (360)
Q Consensus 284 ~Y~tR~VR~aA~~~LD~LFP~Gr~~ 308 (360)
.=+||-||+||-++.+.|=-.|.-|
T Consensus 29 ttVPRNIRraA~~a~e~L~~e~e~p 53 (93)
T COG1698 29 TTVPRNIRRAAEEAKEALNNEGESP 53 (93)
T ss_pred ccccHHHHHHHHHHHHHHhCCCCCc
Confidence 3479999999999999998777654
No 14
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=29.40 E-value=29 Score=29.18 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=26.1
Q ss_pred hhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 018177 268 TRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 306 (360)
Q Consensus 268 ~RLqacLYSfTsPGgP~Y~tR~VR~aA~~~LD~LFP~Gr 306 (360)
.++|.|++=+..--.=.=.||-||++|-++.|.|-=.|.
T Consensus 6 ~~i~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~e~~ 44 (85)
T PF03685_consen 6 EKIKQAIQMLERIINDTSVPRNIRRAAEEAKEILNNEEE 44 (85)
T ss_dssp HHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-TTS
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCCCc
Confidence 455555555544444455799999999999999987766
No 15
>COG3687 Predicted metal-dependent hydrolase [General function prediction only]
Probab=29.22 E-value=50 Score=33.02 Aligned_cols=37 Identities=22% Similarity=0.522 Sum_probs=30.7
Q ss_pred hccCCCCCCCCCChHHHHHHHHhhhhhcCCCCccHHHHH
Q 018177 275 YSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVIS 313 (360)
Q Consensus 275 YSfTsPGgP~Y~tR~VR~aA~~~LD~LFP~Gr~~Rh~Vs 313 (360)
++||.-+++-.+--+|+..-+++|-.|||.|- |++|.
T Consensus 21 Fd~s~~p~hw~~G~p~~T~vfNaLs~LlP~GE--~fFvd 57 (280)
T COG3687 21 FDLSDTPRHWVPGEPVATHVFNALSLLLPAGE--RFFVD 57 (280)
T ss_pred CccCCCCCCCCCCChHHHHHHHHHHHhccchh--HHHHH
Confidence 67888777777888899999999999999995 44443
No 16
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=28.71 E-value=29 Score=20.45 Aligned_cols=7 Identities=86% Similarity=1.668 Sum_probs=6.0
Q ss_pred CCCCCCC
Q 018177 279 SPGGPMY 285 (360)
Q Consensus 279 sPGgP~Y 285 (360)
+||-|||
T Consensus 7 ~~GqP~Y 13 (13)
T PF04648_consen 7 SPGQPMY 13 (13)
T ss_pred cCCCcCC
Confidence 6899988
No 17
>PF12491 ApoB100_C: Apolipoprotein B100 C terminal; InterPro: IPR022176 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Probab=28.40 E-value=40 Score=26.76 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhCCcchhhHHHHHHHHhhhhhHHHHHHHHHHHHHhhH
Q 018177 81 FYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEV 127 (360)
Q Consensus 81 fY~vLA~yy~~vPe~~~~~l~L~~qLwsq~~~~~IfalLF~~WLfe~ 127 (360)
||+.|++||-+.-.+++++.+|-.|=+. ++..|-+=+-+||-..
T Consensus 9 ~sdqls~~yEK~IaeskrLIDLsIqnY~---~Fl~yi~eLL~~lq~a 52 (58)
T PF12491_consen 9 FSDQLSDYYEKFIAESKRLIDLSIQNYH---MFLRYITELLKELQSA 52 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 8999999999999999999999887442 3334444444555443
No 18
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=26.11 E-value=94 Score=24.90 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=28.5
Q ss_pred CCccchHHHHHHHHhh----hCCcchhhHHHHHHHHhh
Q 018177 75 IDSRLCFYDVLADHYV----RMPESGQRILDLIVQLWS 108 (360)
Q Consensus 75 ~~~~~cfY~vLA~yy~----~vPe~~~~~l~L~~qLws 108 (360)
+||. |+|.-+|+-.. ...+..+.|+..|++--.
T Consensus 2 gDGn-ClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~ 38 (121)
T PF02338_consen 2 GDGN-CLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLR 38 (121)
T ss_dssp SSTT-HHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHH
T ss_pred CCcc-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5677 99999999999 888999999999976654
No 19
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=24.85 E-value=72 Score=27.26 Aligned_cols=81 Identities=25% Similarity=0.321 Sum_probs=44.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCchhHH----HHHHHHHhhhhhhhchHHHHhhhcCCCC-CCCCcccCCCccch----
Q 018177 10 HRGSAYLNALTQEIEKKLQRALASPSQRR----NLLQELFADIALEVDDRARDIILSGEEG-GICPAEDGIDSRLC---- 80 (360)
Q Consensus 10 ~~~s~~~~~L~~ei~kkL~~Al~s~~qr~----~ll~eLFaDial~vDdra~~~i~~~~~d-~Is~~~~~~~~~~c---- 80 (360)
...+.-+.+++-|+|+|.+.++..-.++. ..-.+.|..|+-++ + +| +|.= ||+.
T Consensus 33 ~~~~~~Lr~~~dele~~~~~~f~~~~~~l~~~~~~~~~~f~~v~~~l--------f---~dg~inW------GRIval~~ 95 (144)
T cd06845 33 SEVAETLRRVGDELEEKHRRLFENMCRQLNISPDNAYEVFQEVAREL--------F---EDGGINW------GRIVALFA 95 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH--------h---ccCCCCh------HHHHHHHH
Confidence 34566778888999998888776544442 22233333332221 1 11 2322 2443
Q ss_pred HHHHHHHHhhhC--CcchhhHHHHHHHHh
Q 018177 81 FYDVLADHYVRM--PESGQRILDLIVQLW 107 (360)
Q Consensus 81 fY~vLA~yy~~v--Pe~~~~~l~L~~qLw 107 (360)
|=-.||.+.+.. |+-++.+...+.+.-
T Consensus 96 f~~~la~~~~~~~~~~~v~~i~~~~~~fi 124 (144)
T cd06845 96 FGGRLAVKCVEQGLPELVRSIAEWTSDFL 124 (144)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 556778888733 666666665554443
No 20
>PRK02866 cyanate hydratase; Validated
Probab=24.06 E-value=1.6e+02 Score=26.95 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=29.2
Q ss_pred hhchHHHHhhhcCCCCCCCCcccCCCccch-HHHHHHHHhhhCCcchhhHHHHHH
Q 018177 51 EVDDRARDIILSGEEGGICPAEDGIDSRLC-FYDVLADHYVRMPESGQRILDLIV 104 (360)
Q Consensus 51 ~vDdra~~~i~~~~~d~Is~~~~~~~~~~c-fY~vLA~yy~~vPe~~~~~l~L~~ 104 (360)
.+|+.+..++..--.-+..+..--.|+-+| |||++..| |..+-.||+
T Consensus 58 gL~~~~~~~l~~~P~rg~~~~~~ptdP~iYR~yE~v~vY-------G~~~K~~i~ 105 (147)
T PRK02866 58 GLDEDAVALLQEVPYRGSLPPAVPTDPLIYRFYEMVQVY-------GTTLKALIH 105 (147)
T ss_pred CCCHHHHHHHhcCCcCCCCCCCCCCCcHHHHHHHHHHHh-------hHHHHHHHH
Confidence 788887776654433332222233477888 99999988 455555554
No 21
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=23.58 E-value=1.8e+02 Score=23.94 Aligned_cols=72 Identities=26% Similarity=0.410 Sum_probs=47.2
Q ss_pred chhHHHHHHHhhhhcchhHHHHHHHHhhhhcCCccccchhhhHhhhhhccCCCCC---CCCCChH------HHHHHHHhh
Q 018177 228 DFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGG---PMYPTRA------VRHAAWDAL 298 (360)
Q Consensus 228 D~FV~ev~dqL~~iK~E~vLlhYL~~~~~lkg~eLr~tT~~RLqacLYSfTsPGg---P~Y~tR~------VR~aA~~~L 298 (360)
|.+=+-+-+++..+..|+.+.+||...+-. +. ||| |..+||. -|+.|.+.|
T Consensus 21 ~tI~r~i~~~v~~l~se~~v~~~i~~l~~~----------------lw----P~g~~~~~~~~Rt~~ek~~tr~~A~~~L 80 (113)
T PF08628_consen 21 STIERKIRDQVEWLTSEEQVARYIQLLRES----------------LW----PNGKLAEPPPPRTEEEKLRTRQEARELL 80 (113)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHh----------------hC----CCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 556666778888999999999999876432 11 444 2233432 677888899
Q ss_pred hhhcCC------CC-ccHHHHHHHHHhh
Q 018177 299 DFLFPV------GQ-YPRHVISLFFRLL 319 (360)
Q Consensus 299 D~LFP~------Gr-~~Rh~VslfFRLL 319 (360)
..++|+ |+ -.|.-+..+|..|
T Consensus 81 ~~~~P~~l~~vvG~~~~~~g~~~if~~L 108 (113)
T PF08628_consen 81 LSLLPDTLKKVVGSENSRRGARRIFEML 108 (113)
T ss_pred HHhcHHHHHHccCHHHHHHHHHHHHHHH
Confidence 888884 33 3455555555543
No 22
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=22.04 E-value=1.5e+02 Score=22.09 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=28.5
Q ss_pred CCcccccC---CcchhHHHHHHHhhhhcchhH------HHHHHHHhh
Q 018177 218 PNAFLVGG---SADFFVIEVADQLQKLKVEPV------LLHYLSQIK 255 (360)
Q Consensus 218 ~n~~l~gg---~aD~FV~ev~dqL~~iK~E~v------LlhYL~~~~ 255 (360)
.+.+++|. .||+.+-..++.+..+..... |.+|.++|.
T Consensus 46 ~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~ 92 (95)
T PF00043_consen 46 GGPYLVGDKLTIADIALFPMLDWLERLGPDFLFEKFPKLKKWYERMF 92 (95)
T ss_dssp TSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTTHTTSHHHHHHHHHHH
T ss_pred CCCeeeccCCchhHHHHHHHHHHHHHhCCCcccccCHHHHHHHHHHH
Confidence 67788885 699999999998877766554 566666653
No 23
>TIGR02573 LcrG_PcrG type III secretion protein LcrG. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the protein is believed to make a 1:1 complex with PcrV (LcrV). Mutants of LcrG cause premature secretion of effector proteins into the medium.
Probab=21.11 E-value=1.2e+02 Score=26.03 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhhhhhhhchHHHHhhhc
Q 018177 23 IEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILS 62 (360)
Q Consensus 23 i~kkL~~Al~s~~qr~~ll~eLFaDial~vDdra~~~i~~ 62 (360)
+...-..||+.+.+|..|++|+.+++.+ -+.+-+.|++
T Consensus 7 tl~~AElAI~dsd~R~~llqEm~~gLgl--~p~ag~~Lf~ 44 (90)
T TIGR02573 7 TLQAAELAIRDSDERNDLLQEMWQGLGL--GPVAGEVLFG 44 (90)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHcCC--ChHHHHHHHc
Confidence 3345578999999999999999998764 3455555555
No 24
>PF12464 Mac: Maltose acetyltransferase ; InterPro: IPR024688 Maltose acetyltransferase uses acetyl-CoA as acetyl donor to acetylate cytoplasmic maltose [], while galactoside acetyltransferase act on galactosides. ; GO: 0016407 acetyltransferase activity; PDB: 3V4E_A 4EGG_E 4DCL_A 3FTT_A 1KRR_B 1KRU_A 1KRV_C 1KQA_A 3NZ2_J 3ECT_A ....
Probab=20.68 E-value=96 Score=22.29 Aligned_cols=28 Identities=25% Similarity=0.622 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhc-CchhHHHHHHHHHhhh
Q 018177 21 QEIEKKLQRALA-SPSQRRNLLQELFADI 48 (360)
Q Consensus 21 ~ei~kkL~~Al~-s~~qr~~ll~eLFaDi 48 (360)
++...+.+..-. ...+|.+||++||..+
T Consensus 25 ~~l~~~~N~~~~~d~~~r~~llk~l~g~~ 53 (55)
T PF12464_consen 25 KRLLQRYNQTPPEDPEERQELLKELFGSV 53 (55)
T ss_dssp HHHHHHHHHSHTTTHHHHHHHHHHHSSBE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhhc
Confidence 333444444333 4599999999999754
No 25
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=20.41 E-value=2.8e+02 Score=22.50 Aligned_cols=80 Identities=21% Similarity=0.430 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhhhhchHHHHhhhcCCCCCCCCcccCCCccchHHHHHHHHhhhCC
Q 018177 14 AYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMP 93 (360)
Q Consensus 14 ~~~~~L~~ei~kkL~~Al~s~~qr~~ll~eLFaDial~vDdra~~~i~~~~~d~Is~~~~~~~~~~cfY~vLA~yy~~vP 93 (360)
.+-..+..-|++.++++ .+.|+..++ -|-+||...+..++..... ..+.+++.+=|..+|
T Consensus 33 ~~a~~iv~~i~~~i~~~--~~~~KL~~L-YL~dsIvkn~~~~~~~~~~-----------------~~~~~~f~~~~~~~~ 92 (114)
T cd03562 33 KHAKEIVEIIEKHIKKC--PPEQKLPLL-YLLDSIVKNVGRKYKEFFS-----------------EFLVPLFLDAYEKVD 92 (114)
T ss_pred HHHHHHHHHHHHHHHhC--CcccchHHH-HHHHHHHHHcccchHHHHH-----------------HHHHHHHHHHHHhCC
Confidence 34445556666666555 445665544 4667777666665554211 134778888888999
Q ss_pred cchhhHHHHHHHHhhhhhHH
Q 018177 94 ESGQRILDLIVQLWSQLFVS 113 (360)
Q Consensus 94 e~~~~~l~L~~qLwsq~~~~ 113 (360)
++.+.=+.=+...|.+...+
T Consensus 93 ~~~r~kl~rl~~iW~~~~~f 112 (114)
T cd03562 93 EKTRKKLERLLNIWEERFVF 112 (114)
T ss_pred HHHHHHHHHHHHHccCCCCC
Confidence 99998888888999987543
No 26
>PF14724 mit_SMPDase: Mitochondrial-associated sphingomyelin phosphodiesterase
Probab=20.15 E-value=46 Score=37.22 Aligned_cols=27 Identities=44% Similarity=0.600 Sum_probs=23.0
Q ss_pred CCccccchhh---hHhhhhhccCCCCCCCC
Q 018177 259 GMELRMTTST---RLKTCLYSFTSPGGPMY 285 (360)
Q Consensus 259 g~eLr~tT~~---RLqacLYSfTsPGgP~Y 285 (360)
||+||.+|.. .-=.+|..|=+|||||.
T Consensus 58 GW~Lr~~~~~~n~~ef~~l~~Fl~P~GPm~ 87 (765)
T PF14724_consen 58 GWGLRTLTRRNNPYEFNTLREFLSPGGPMM 87 (765)
T ss_pred CCCccccccccChhHHHHHHHHcCCCCcHH
Confidence 9999999985 34478999999999985
No 27
>CHL00086 apcA allophycocyanin alpha subunit
Probab=20.12 E-value=80 Score=28.73 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=15.9
Q ss_pred cCCCCCCCCCChHHHHHHHHhhh
Q 018177 277 FTSPGGPMYPTRAVRHAAWDALD 299 (360)
Q Consensus 277 fTsPGgP~Y~tR~VR~aA~~~LD 299 (360)
.++|||+.|++|. ..|.|.=++
T Consensus 65 l~~~gG~~y~~~r-~~aC~RD~~ 86 (161)
T CHL00086 65 IVSPGGNAYGEEM-TATCLRDLD 86 (161)
T ss_pred CcCCCCCCccHHH-HHHHHHHHH
Confidence 3799999999987 455555443
No 28
>PF11880 DUF3400: Domain of unknown function (DUF3400); InterPro: IPR021817 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 50 amino acids in length. This domain is found associated with PF02754 from PFAM, PF02913 from PFAM, PF01565 from PFAM.
Probab=20.04 E-value=61 Score=24.65 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=21.6
Q ss_pred cCCcchhHHHHHHHhhhhcchhHHHHHHHHh
Q 018177 224 GGSADFFVIEVADQLQKLKVEPVLLHYLSQI 254 (360)
Q Consensus 224 gg~aD~FV~ev~dqL~~iK~E~vLlhYL~~~ 254 (360)
|..+|+.|+|++++| --|.-+..|+.+.
T Consensus 8 ~~~aDYIVVEmA~~l---LGe~W~~~~v~~a 35 (45)
T PF11880_consen 8 GLEADYIVVEMARHL---LGENWQQDYVERA 35 (45)
T ss_pred CCccceehHHHHHHH---hhhhHHHHHHHHH
Confidence 568999999999984 3566777777664
No 29
>cd06931 NR_LBD_HNF4_like The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes. The ligand binding domain of hepatocyte nuclear factor 4 (HNF4) like proteins: HNF4 is a member of the nuclear receptor superfamily. HNF4 plays a key role in establishing and maintenance of hepatocyte differentiation in the liver. It is also expressed in gut, kidney, and pancreatic beta cells. HNF4 was originally classified as an orphan receptor, but later it is found that HNF4 binds with very high affinity to a variety of fatty acids. However, unlike other nuclear receptors, the ligands do not act as a molecular switch for HNF4. They seem to constantly bind to the receptor, which is constitutively active as a transcription activator. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, HNF4 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal lig
Probab=20.02 E-value=1.3e+02 Score=27.24 Aligned_cols=71 Identities=13% Similarity=0.202 Sum_probs=47.7
Q ss_pred HHHHHHhhhhcchhHHHHHHHHhhhhc----CC---ccccchhhhHhhhhhccCCCCCCCCCCh---------HHHHHHH
Q 018177 232 IEVADQLQKLKVEPVLLHYLSQIKVLQ----GM---ELRMTTSTRLKTCLYSFTSPGGPMYPTR---------AVRHAAW 295 (360)
Q Consensus 232 ~ev~dqL~~iK~E~vLlhYL~~~~~lk----g~---eLr~tT~~RLqacLYSfTsPGgP~Y~tR---------~VR~aA~ 295 (360)
.++++.+..++..++=.-+|..+.++. |+ +.-..-+.+++.||..+..-..|.++.| .+|+.++
T Consensus 119 ~~~~~~l~~L~l~~~E~~lLkaiil~~p~~~~ls~~~~i~~~r~~~~~aL~~y~~~~~~~~~~Rf~~LL~~l~~lr~~~~ 198 (222)
T cd06931 119 DELVLPLRDLNIDDNEYACLKAIVFFDPDAKGLSDPQKIKRLRFQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITW 198 (222)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH
Confidence 467777887777666666677766664 22 1122344567788988876566777777 6888888
Q ss_pred Hhhhhhc
Q 018177 296 DALDFLF 302 (360)
Q Consensus 296 ~~LD~LF 302 (360)
+..+.+|
T Consensus 199 ~~~e~l~ 205 (222)
T cd06931 199 QMIEQIQ 205 (222)
T ss_pred HHHHHHh
Confidence 8777765
Done!