Query 018177
Match_columns 360
No_of_seqs 22 out of 24
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 11:09:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2imu_A Structural polyprotein 36.2 16 0.00055 26.7 1.7 20 288-307 8-27 (46)
2 2qsb_A UPF0147 protein TA0600; 27.6 24 0.00082 28.8 1.6 41 266-306 8-48 (89)
3 2qzg_A Conserved uncharacteriz 27.4 27 0.00094 28.7 1.9 41 266-306 12-52 (94)
4 3n1e_A Vacuolar protein sortin 26.1 1.7E+02 0.0058 25.1 6.7 49 9-58 47-98 (141)
5 3b2a_A TON_1937, putative unch 23.7 1.2E+02 0.0041 28.9 5.7 75 240-320 85-160 (265)
6 2j96_A Phycoerythrocyanin alph 23.0 42 0.0014 29.0 2.4 13 277-289 66-78 (162)
7 3o18_A C-phycocyanin alpha sub 21.7 39 0.0013 29.2 1.9 22 277-298 66-88 (162)
8 1dw9_A Cyanate lyase; cyanate 20.2 74 0.0025 27.9 3.4 39 50-88 65-104 (156)
9 1kn1_B Allophycocyanin; helix- 20.0 49 0.0017 28.5 2.2 21 277-298 65-85 (161)
10 1kn1_A Allophycocyanin; helix- 19.4 66 0.0022 27.7 2.8 21 277-298 64-84 (160)
No 1
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=36.20 E-value=16 Score=26.70 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=17.7
Q ss_pred hHHHHHHHHhhhhhcCCCCc
Q 018177 288 RAVRHAAWDALDFLFPVGQY 307 (360)
Q Consensus 288 R~VR~aA~~~LD~LFP~Gr~ 307 (360)
|++|+.|.-++|-|||..+=
T Consensus 8 r~irr~a~PVvsTlfP~Aap 27 (46)
T 2imu_A 8 RAIRRIAVPVVSTLFPPAAP 27 (46)
T ss_dssp HHHHHHSHHHHHHHCSSTTH
T ss_pred HHHHHhhhhhhhccCCCcch
Confidence 78999999999999997653
No 2
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=27.58 E-value=24 Score=28.81 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=29.7
Q ss_pred hhhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 018177 266 TSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 306 (360)
Q Consensus 266 T~~RLqacLYSfTsPGgP~Y~tR~VR~aA~~~LD~LFP~Gr 306 (360)
+..++|.|++=+..--.=.=.||-+|+||-++.+.|.=.+.
T Consensus 8 ~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~ 48 (89)
T 2qsb_A 8 DQNLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQENE 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTTS
T ss_pred cHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCc
Confidence 34456666665554444556899999999999999987654
No 3
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=27.36 E-value=27 Score=28.72 Aligned_cols=41 Identities=22% Similarity=0.100 Sum_probs=29.5
Q ss_pred hhhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 018177 266 TSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 306 (360)
Q Consensus 266 T~~RLqacLYSfTsPGgP~Y~tR~VR~aA~~~LD~LFP~Gr 306 (360)
+..++|.|++=+..--.=.=+||-+|+||-++.+.|.=.+.
T Consensus 12 ~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~ 52 (94)
T 2qzg_A 12 PADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQ 52 (94)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTS
T ss_pred hHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCc
Confidence 34556666665554444456899999999999999987654
No 4
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=26.09 E-value=1.7e+02 Score=25.12 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=41.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHhhhhhhhchHHHH
Q 018177 9 THRGSAYLNALTQEIEKKLQRALA---SPSQRRNLLQELFADIALEVDDRARD 58 (360)
Q Consensus 9 ~~~~s~~~~~L~~ei~kkL~~Al~---s~~qr~~ll~eLFaDial~vDdra~~ 58 (360)
++-.|.|.+.|++|+- |||+||. .++|=+.|...+|+...-.+.+..++
T Consensus 47 ~pvpS~~m~tl~Ke~~-kLH~~Ls~~LP~~~v~~Im~~Vf~~fk~~l~~~~~~ 98 (141)
T 3n1e_A 47 APVPSPCFRNICKQMT-KMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSH 98 (141)
T ss_dssp SSSSCHHHHHHHHHHH-HHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999985 7999999 55898999999999888777776665
No 5
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=23.67 E-value=1.2e+02 Score=28.93 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=63.5
Q ss_pred hhcchhHHHHHHHHhhhh-cCCccccchhhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCCccHHHHHHHHHh
Q 018177 240 KLKVEPVLLHYLSQIKVL-QGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRL 318 (360)
Q Consensus 240 ~iK~E~vLlhYL~~~~~l-kg~eLr~tT~~RLqacLYSfTsPGgP~Y~tR~VR~aA~~~LD~LFP~Gr~~Rh~VslfFRL 318 (360)
+=+.|.|.++=+.-++.+ .|.++..-|=+|+-.+|=+.-+-|.| .+|-.|-++|+.| ++-..+|.++++.|||
T Consensus 85 k~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~-----il~~eaae~Lgkl-kv~~~~~~V~~~l~sL 158 (265)
T 3b2a_A 85 SQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDD-----MMRIETIDVLSKL-QPLEDSKLVRTYINEL 158 (265)
T ss_dssp CSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCH-----HHHHHHHHHHHHC-CBSCCCHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCc-----hHHHHHHHHhCcC-CcccchHHHHHHHHHH
Confidence 447788888888887766 88999999999999999887664332 4889999999999 8888899999999999
Q ss_pred hc
Q 018177 319 LY 320 (360)
Q Consensus 319 Lh 320 (360)
++
T Consensus 159 l~ 160 (265)
T 3b2a_A 159 VV 160 (265)
T ss_dssp HT
T ss_pred Hh
Confidence 96
No 6
>2j96_A Phycoerythrocyanin alpha chain; electron transport, Z- to E-isomerization, transport, chromophore, bIle pigment, phycobilisome; HET: PVN; 2.25A {Mastigocladus laminosus} PDB: 2c7k_A* 2c7j_A* 2c7l_A*
Probab=22.99 E-value=42 Score=28.98 Aligned_cols=13 Identities=31% Similarity=0.513 Sum_probs=11.9
Q ss_pred cCCCCCCCCCChH
Q 018177 277 FTSPGGPMYPTRA 289 (360)
Q Consensus 277 fTsPGgP~Y~tR~ 289 (360)
+|+|||++|++|.
T Consensus 66 l~~~ggn~y~~~~ 78 (162)
T 2j96_A 66 TTQMQGPQYASTP 78 (162)
T ss_dssp GTSSCSSSSCCSH
T ss_pred ccCCCCCCCccch
Confidence 4899999999988
No 7
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=21.70 E-value=39 Score=29.24 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=15.0
Q ss_pred cCCCCCCCCCChHH-HHHHHHhh
Q 018177 277 FTSPGGPMYPTRAV-RHAAWDAL 298 (360)
Q Consensus 277 fTsPGgP~Y~tR~V-R~aA~~~L 298 (360)
+|+|||+.|+++.- ..|.|.=+
T Consensus 66 l~~~gG~~y~~~~~~~~~C~RD~ 88 (162)
T 3o18_A 66 TTTMQGSQYASTPEGKAKCARDI 88 (162)
T ss_dssp GGTSCSTTSSSSHHHHHHHHHHH
T ss_pred ccCCCCCCCcchhHHHHHHHHHH
Confidence 48999999999764 23444433
No 8
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=20.22 E-value=74 Score=27.92 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=23.3
Q ss_pred hhhchHHHHhhhcCCCCCCCCcccCCCccch-HHHHHHHH
Q 018177 50 LEVDDRARDIILSGEEGGICPAEDGIDSRLC-FYDVLADH 88 (360)
Q Consensus 50 l~vDdra~~~i~~~~~d~Is~~~~~~~~~~c-fY~vLA~y 88 (360)
+.+|+.+..++...-.-+-.+..--.|+-+| |||++-.|
T Consensus 65 LgL~~e~~~~l~~~P~rg~~~~~~ptdP~iYR~yE~v~vY 104 (156)
T 1dw9_A 65 LDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVY 104 (156)
T ss_dssp TTCCHHHHHHTTSBCCCCCCSSSSCCSHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHhcCCcCCCCCCCCCCCCeehhHHHHHHHh
Confidence 4677777665543322222222233477888 99999888
No 9
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=20.01 E-value=49 Score=28.45 Aligned_cols=21 Identities=48% Similarity=0.697 Sum_probs=15.3
Q ss_pred cCCCCCCCCCChHHHHHHHHhh
Q 018177 277 FTSPGGPMYPTRAVRHAAWDAL 298 (360)
Q Consensus 277 fTsPGgP~Y~tR~VR~aA~~~L 298 (360)
+|+|||.+|++|. ..|.++=+
T Consensus 65 l~~pgg~~y~~~r-~~~ClRD~ 85 (161)
T 1kn1_B 65 ITRPGGNMYTTRR-YAACIRDL 85 (161)
T ss_dssp GGSTTSTTCSHHH-HHHHHHHH
T ss_pred ccCCCCCCccHHH-HHHHHHHH
Confidence 4899999999988 44444433
No 10
>1kn1_A Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 3dbj_A* 2v8a_A* 1b33_A* 2vjt_A* 1all_A*
Probab=19.40 E-value=66 Score=27.69 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=15.2
Q ss_pred cCCCCCCCCCChHHHHHHHHhh
Q 018177 277 FTSPGGPMYPTRAVRHAAWDAL 298 (360)
Q Consensus 277 fTsPGgP~Y~tR~VR~aA~~~L 298 (360)
+++|||.+|++|. ..|.++=+
T Consensus 64 l~~~gg~~y~~~~-~~~ClRD~ 84 (160)
T 1kn1_A 64 VVSPGGNAYGEEM-TATCLRDL 84 (160)
T ss_dssp TSSSSCSSCSTTH-HHHHHHHH
T ss_pred ccCCCCCcccHHH-HHHHHHHH
Confidence 3899999999988 44444433
Done!