BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018178
(360 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa
subsp. japonica GN=Os06g0677700 PE=2 SV=1
Length = 665
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 93/137 (67%), Gaps = 2/137 (1%)
Query: 71 TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQ 130
+RYFI+KS N +N+++S+++ IWATQ NE L EAF + VILIFS+N + FQG A+
Sbjct: 260 SRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIENVILIFSINRTRNFQGCAK 319
Query: 131 MMSSV-GWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISR 189
M S + G+ W +G + +GR+F ++WL+L L FQKT HL+NP ND PVKISR
Sbjct: 320 MTSRIGGYIGGGNWKSAHGTAH-YGRNFSIQWLKLCELSFQKTHHLRNPYNDNLPVKISR 378
Query: 190 DCQELPQDIGEALCHLL 206
DCQEL IGE L LL
Sbjct: 379 DCQELEPFIGEQLASLL 395
>sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity factor CPSF30
OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1
Length = 631
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 89/136 (65%), Gaps = 2/136 (1%)
Query: 72 RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQM 131
RYF++KS N +N +LS+++ +WATQ NE L EAF + VILIFSVN + FQG A+M
Sbjct: 238 RYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKM 297
Query: 132 MSSV-GWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRD 190
S + G+ W +G +GR+F VKWL+L L F KT +L+NP N+ PVKISRD
Sbjct: 298 TSRIGGYIGGGNWKHEHGTAQ-YGRNFSVKWLKLCELSFHKTRNLRNPYNENLPVKISRD 356
Query: 191 CQELPQDIGEALCHLL 206
CQEL +GE L LL
Sbjct: 357 CQELEPSVGEQLASLL 372
>sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1
SV=1
Length = 738
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 114/238 (47%), Gaps = 28/238 (11%)
Query: 2 SSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANE------HRCPSLAKEAKAGHSNG 55
+SD+ E+ S D SV SD+ + +A R S A E+ AG
Sbjct: 273 ASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKK 332
Query: 56 Q----------LENSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEE 105
++ T K L + R+F+IKS NH+N+ L+ K +W+T +NE L
Sbjct: 333 HEKLSSSVRAVRKDQTSKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNL 392
Query: 106 AFHNSGKVILIFSVNMSGFFQGYAQMMSS-------VGWRRDNVWSQGNGKNNPWGRSFK 158
AF ++ VILIFSV SG FQG+A++ S + W V G G FK
Sbjct: 393 AFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHW----VLPAGMSAKM-LGGVFK 447
Query: 159 VKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQ 216
+ W+ LPF K+ HL NP N++KPVKI RD QE+ + G LC L + +D Q
Sbjct: 448 IDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQ 505
>sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2
PE=2 SV=1
Length = 1445
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 80/134 (59%), Gaps = 5/134 (3%)
Query: 72 RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQM 131
RYFI+KS N +N+++S +K IW+T NE L AF S V L+FSV SG FQG+++M
Sbjct: 1304 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1363
Query: 132 MSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDC 191
S +G + W G FKV+W+R +LPFQ HL NP ND K V+ISRD
Sbjct: 1364 SSEIGREKSQDWGSAG-----LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDG 1418
Query: 192 QELPQDIGEALCHL 205
QEL +GE L L
Sbjct: 1419 QELEPQVGEQLLQL 1432
>sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3
Length = 727
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 114/239 (47%), Gaps = 28/239 (11%)
Query: 2 SSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANE------HRCPSLAKEAKAGHSNG 55
+SD+ E+ S D SV SD+ + +A R S A E+ AG
Sbjct: 270 ASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKK 329
Query: 56 Q----------LENSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEE 105
++ T K L + R+F+IKS NH+N+ L+ K +W+T +NE L
Sbjct: 330 HEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNL 389
Query: 106 AFHNSGKVILIFSVNMSGFFQGYAQMMSS-------VGWRRDNVWSQGNGKNNPWGRSFK 158
AF ++ VILIFSV SG FQG+A++ S + W V G G FK
Sbjct: 390 AFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHW----VLPAGMSAKM-LGGVFK 444
Query: 159 VKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQT 217
+ W+ LPF K+ HL NP N++KPVKI RD QE+ + G LC L + +D Q
Sbjct: 445 IDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQV 503
>sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1
Length = 671
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 81/137 (59%), Gaps = 5/137 (3%)
Query: 71 TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQ 130
RYFI+KS N +N+++S +K IW+T NE L AF S V L+FSV SG FQG+++
Sbjct: 529 VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSR 588
Query: 131 MMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRD 190
M S +G + W G FKV+W+R +LPFQ HL NP ND K V+ISRD
Sbjct: 589 MSSEIGREKSQDWGSAG-----LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRD 643
Query: 191 CQELPQDIGEALCHLLD 207
QEL +GE L L +
Sbjct: 644 GQELEPQVGEQLLQLWE 660
>sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2
PE=1 SV=2
Length = 1430
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 5/135 (3%)
Query: 71 TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQ 130
RYFI+KS N +N+++S +K IW+T NE L AF S V L+FSV SG FQG+++
Sbjct: 1288 VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSR 1347
Query: 131 MMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRD 190
M S +G + W G FKV+W+R +LPFQ HL NP ND K V+ISRD
Sbjct: 1348 MSSEIGREKSQDWGSAG-----LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRD 1402
Query: 191 CQELPQDIGEALCHL 205
QEL +GE L L
Sbjct: 1403 GQELEPLVGEQLLQL 1417
>sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1
Length = 559
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 9/143 (6%)
Query: 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHN---SGKVILIFSVNMSGF 124
L + R FIIKS + +I SI+ IW + L+ AF + G V L+FSVN SG
Sbjct: 386 LKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKGPVYLLFSVNGSGH 445
Query: 125 FQGYAQMMSSVGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYK 183
F G A+M S V + VWSQ + W F VKW+ + +P + H++ ND K
Sbjct: 446 FCGVAEMKSPVDYGTSAGVWSQ-----DKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNK 500
Query: 184 PVKISRDCQELPQDIGEALCHLL 206
PV SRD QE+P + + + ++
Sbjct: 501 PVTNSRDTQEVPLEKAKQVLKII 523
>sp|Q5RFL8|YTHD3_PONAB YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1
Length = 585
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAF---HNSGKVILIFSVNMSGF 124
L N R FIIKS + +I SI+ IW + L+ A+ + G + L+FSVN SG
Sbjct: 413 LKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGH 472
Query: 125 FQGYAQMMSSVGWRR-DNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYK 183
F G A+M S V + VWSQ + W F+VKW+ + +P + H++ ND K
Sbjct: 473 FCGVAEMKSVVDYNAYAGVWSQ-----DKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNK 527
Query: 184 PVKISRDCQELPQDIGEALCHLL 206
PV SRD QE+P + + + ++
Sbjct: 528 PVTNSRDTQEVPLEKAKQVLKII 550
>sp|Q7Z739|YTHD3_HUMAN YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1
Length = 585
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAF---HNSGKVILIFSVNMSGF 124
L N R FIIKS + +I SI+ IW + L+ A+ + G + L+FSVN SG
Sbjct: 413 LKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGH 472
Query: 125 FQGYAQMMSSVGWRR-DNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYK 183
F G A+M S V + VWSQ + W F+VKW+ + +P + H++ ND K
Sbjct: 473 FCGVAEMKSVVDYNAYAGVWSQ-----DKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNK 527
Query: 184 PVKISRDCQELPQDIGEALCHLL 206
PV SRD QE+P + + + ++
Sbjct: 528 PVTNSRDTQEVPLEKAKQVLKII 550
>sp|Q8BYK6|YTHD3_MOUSE YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2
Length = 585
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAF---HNSGKVILIFSVNMSGF 124
L N R FIIKS + +I SI+ IW + L+ A+ + G + L+FSVN SG
Sbjct: 413 LKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGH 472
Query: 125 FQGYAQMMSSVGWRR-DNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYK 183
F G A+M S V + VWSQ + W F+VKW+ + +P + H++ ND K
Sbjct: 473 FCGVAEMKSVVDYNAYAGVWSQ-----DKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNK 527
Query: 184 PVKISRDCQELPQDIGEALCHLL 206
PV SRD QE+P + + + ++
Sbjct: 528 PVTNSRDTQEVPLEKAKQVLKII 550
>sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1
Length = 559
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 9/143 (6%)
Query: 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFH---NSGKVILIFSVNMSGF 124
L + R FIIKS + +I SI+ IW + L+ AF + G V L+FSVN SG
Sbjct: 386 LKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLFSVNGSGH 445
Query: 125 FQGYAQMMSSVGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYK 183
F G A+M S V + VWSQ + W F V+W+ + +P + H++ ND K
Sbjct: 446 FCGVAEMKSPVDYGTSAGVWSQ-----DKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNK 500
Query: 184 PVKISRDCQELPQDIGEALCHLL 206
PV SRD QE+P + + + ++
Sbjct: 501 PVTNSRDTQEVPLEKAKQVLKII 523
>sp|Q06390|YD374_YEAST YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YDR374C PE=4 SV=1
Length = 306
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 8/145 (5%)
Query: 70 NTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFH--NSG-KVILIFSVNMSGFFQ 126
N+R+F+IKS + ++++ S IW++ L EA+ NSG KV L FS+N SG F
Sbjct: 154 NSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYKKLNSGAKVFLFFSINTSGRFC 213
Query: 127 GYAQMMSSVGWRRD-NVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPV 185
G A+M+S + D ++W +G++FKV+W+ + + + P N+ KP+
Sbjct: 214 GVAEMVSDLKMDLDTSIWED----EQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPI 269
Query: 186 KISRDCQELPQDIGEALCHLLDGKD 210
SRD QE+P IG ++ +L +D
Sbjct: 270 THSRDTQEIPYSIGISIINLFKTQD 294
>sp|Q4R5D9|YTHD2_MACFA YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2
SV=1
Length = 579
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAF---HNSGKVILIFSVNMSGF 124
L + R FIIKS + +I SI+ IW + L+ A+ + G V L+FSVN SG
Sbjct: 407 LKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGH 466
Query: 125 FQGYAQMMSSVGWRR-DNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYK 183
F G A+M S+V + VWSQ + W F V+W+ + +P + H++ N+ K
Sbjct: 467 FCGVAEMKSAVDYNTCAGVWSQ-----DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENK 521
Query: 184 PVKISRDCQELPQDIGEALCHLL 206
PV SRD QE+P + + + ++
Sbjct: 522 PVTNSRDTQEVPLEKAKQVLKII 544
>sp|Q9Y5A9|YTHD2_HUMAN YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2
Length = 579
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAF---HNSGKVILIFSVNMSGF 124
L + R FIIKS + +I SI+ IW + L+ A+ + G V L+FSVN SG
Sbjct: 407 LKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGH 466
Query: 125 FQGYAQMMSSVGWRR-DNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYK 183
F G A+M S+V + VWSQ + W F V+W+ + +P + H++ N+ K
Sbjct: 467 FCGVAEMKSAVDYNTCAGVWSQ-----DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENK 521
Query: 184 PVKISRDCQELPQDIGEALCHLL 206
PV SRD QE+P + + + ++
Sbjct: 522 PVTNSRDTQEVPLEKAKQVLKII 544
>sp|Q0VCZ3|YTHD2_BOVIN YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1
Length = 580
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAF---HNSGKVILIFSVNMSGF 124
L + R FIIKS + +I SI+ IW + L+ A+ + G V L+FSVN SG
Sbjct: 408 LKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGH 467
Query: 125 FQGYAQMMSSVGWRR-DNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYK 183
F G A+M S+V + VWSQ + W F V+W+ + +P + H++ N+ K
Sbjct: 468 FCGVAEMKSAVDYNTCAGVWSQ-----DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENK 522
Query: 184 PVKISRDCQELPQDIGEALCHLL 206
PV SRD QE+P + + + ++
Sbjct: 523 PVTNSRDTQEVPLEKAKQVLKII 545
>sp|O74958|MMI1_SCHPO YTH domain-containing protein mmi1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mmi1 PE=1 SV=3
Length = 488
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 63 NNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMS 122
+ G + +RYFI+ N I + + IWA + + + +A+ V IF +
Sbjct: 342 DENGISHRSRYFIMLCDNETAIAHAKKTSIWAVKKDSSKRISDAY-KKASVYFIFVAQQT 400
Query: 123 GFFQGYAQMMSSVGWRRDNVWSQGNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDY 182
GYAQ++S + WS + ++KW++ L + + + ++
Sbjct: 401 YNALGYAQVVSDLNSTELPFWSDSSHAGG-----VRIKWIKTCNLFSAEISEIVSHMDH- 454
Query: 183 KPVKISRDCQELPQDIGEALCHLLD 207
+RD E+ D G LC L++
Sbjct: 455 --GSEARDGMEMMYDEGSRLCTLIN 477
>sp|Q3V1H1|CKAP2_MOUSE Cytoskeleton-associated protein 2 OS=Mus musculus GN=Ckap2 PE=2
SV=1
Length = 664
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 170 QKTLHLKNPLNDYKPVK--ISRDCQELPQDIGEALC-HLLDGKDDVDGIQTSFHRDDLPA 226
+K + LK + D + ++ + ++C +P GE + + KD+V +Q RDDLP
Sbjct: 79 KKVVKLKTEVADKENIESTVEKNC--IPLKAGEVTSSEIHNSKDNVQAVQLLSTRDDLPG 136
Query: 227 KRPCIEPSC 235
+ ++P+C
Sbjct: 137 QTVTLDPAC 145
>sp|Q09771|ATF31_SCHPO Transcription factor atf31 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=atf31 PE=3 SV=1
Length = 209
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 21 HDVGNSDDPESSSYKANEHRCPSLAKEAKAGHSNGQLENSTDNNKGKLYNTRYFIIKSLN 80
+++ SD E S Y A+ + PS+ EA + +L++S D N KL T+ ++K+ N
Sbjct: 74 YNIRRSDFDELSEYTAS--KSPSIISEASHNSPSRELDDSGDENTSKLTGTKQSMLKARN 131
Query: 81 HQNIQ 85
Q Q
Sbjct: 132 RQAAQ 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,848,865
Number of Sequences: 539616
Number of extensions: 6486668
Number of successful extensions: 13209
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13161
Number of HSP's gapped (non-prelim): 24
length of query: 360
length of database: 191,569,459
effective HSP length: 119
effective length of query: 241
effective length of database: 127,355,155
effective search space: 30692592355
effective search space used: 30692592355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)