Query 018178
Match_columns 360
No_of_seqs 123 out of 325
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 11:09:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yu6_A YTH domain-containing p 100.0 1E-53 3.5E-58 372.6 12.6 138 66-208 3-140 (141)
2 2yud_A YTH domain-containing p 100.0 2.7E-52 9.3E-57 376.7 11.1 147 68-214 23-171 (180)
3 2hd9_A UPF0310 protein PH1033; 97.3 0.0021 7.1E-08 55.6 11.4 131 72-206 2-144 (145)
4 2p5d_A UPF0310 protein mjecl36 96.7 0.0044 1.5E-07 53.7 8.1 129 71-205 4-147 (147)
5 3eop_A Thymocyte nuclear prote 46.7 29 0.00099 31.3 5.5 136 72-208 2-169 (176)
6 2eve_A Hypothetical protein ps 45.2 81 0.0028 27.8 8.0 131 72-206 2-149 (157)
7 2ar1_A Hypothetical protein; s 34.9 96 0.0033 27.7 6.9 132 71-206 19-166 (172)
8 2jvf_A De novo protein M7; tet 21.4 13 0.00043 29.7 -1.1 15 183-197 8-22 (96)
9 3zzy_A Polypyrimidine tract-bi 15.0 2E+02 0.0068 23.9 4.7 36 99-134 41-76 (130)
10 2gbs_A Hypothetical protein RP 14.2 1.8E+02 0.0061 25.2 4.3 124 72-208 2-137 (145)
No 1
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1e-53 Score=372.65 Aligned_cols=138 Identities=45% Similarity=0.722 Sum_probs=132.9
Q ss_pred CCCCcceEEEEEeCChhhHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEecCCCceeEEEEeeccCCCCCCccccC
Q 018178 66 GKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSQ 145 (360)
Q Consensus 66 ~~~~~aRFFIIKS~n~eNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~i~~~~~~~W~~ 145 (360)
+...++|||||||++++||++|++||||+||++|+++|++||+++++||||||||+||+|||||+|+|++++.+...|.+
T Consensus 3 ~~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~~V~L~FSvn~Sg~F~G~A~M~s~~~~~~~~~W~~ 82 (141)
T 2yu6_A 3 SGSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGS 82 (141)
T ss_dssp CCCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSSCEEEEEEESSSSEECEEEEECSCSSSCCCCCCSC
T ss_pred CCCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCCcEEEEEEECCCCeEEEEEEEcccCCCCCCccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999977788986
Q ss_pred CCCCCCCCCCceeeEEEEeeeCCCCcccCccCCCCCCCCeeeCCCCcccChhHHHHHHHHhcC
Q 018178 146 GNGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDG 208 (360)
Q Consensus 146 ~~g~~~~wgg~F~VeWL~v~dLPF~~~~HLrNplNenKPVk~sRDGQEIe~e~G~qLckLF~~ 208 (360)
.+|+|.|+|+||++++|||+.++||+||+|+||||+++||||||++++|++||+||+.
T Consensus 83 -----~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~ 140 (141)
T 2yu6_A 83 -----AGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWER 140 (141)
T ss_dssp -----SCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGT
T ss_pred -----cccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhh
Confidence 5999999999999999999999999999999999999999999999999999999975
No 2
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=2.7e-52 Score=376.71 Aligned_cols=147 Identities=41% Similarity=0.687 Sum_probs=137.0
Q ss_pred CCcceEEEEEeCChhhHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEecCCCceeEEEEeeccCCCCCC-ccccCC
Q 018178 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRD-NVWSQG 146 (360)
Q Consensus 68 ~~~aRFFIIKS~n~eNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~i~~~~~-~~W~~~ 146 (360)
..++|||||||++++||++|++|||||||++|+++|++||+++++||||||||+||+|||||+|+|+++.... ..|..+
T Consensus 23 ~~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~~V~L~FSVn~Sg~F~G~A~M~s~~~~~~~~~~W~~~ 102 (180)
T 2yud_A 23 LQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLP 102 (180)
T ss_dssp TTTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSSCEEEEEEETTTSEEEEEEEEEEEEECSSCCCCCCCC
T ss_pred cCceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhCCeEEEEEEeCCCCcEEEEEEEccCCCCCCCCcccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999987654 678754
Q ss_pred CCC-CCCCCCceeeEEEEeeeCCCCcccCccCCCCCCCCeeeCCCCcccChhHHHHHHHHhcCCCCccc
Q 018178 147 NGK-NNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDG 214 (360)
Q Consensus 147 ~g~-~~~wgg~F~VeWL~v~dLPF~~~~HLrNplNenKPVk~sRDGQEIe~e~G~qLckLF~~~~~~~~ 214 (360)
.+. ..+|+|.|+|+||++++|||..++||+||||+||||+++||||||++++|++||+||..+++++.
T Consensus 103 ~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L~~lf~~~~~~~~ 171 (180)
T 2yud_A 103 AGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDL 171 (180)
T ss_dssp SSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHHHHHSCCCSSSCS
T ss_pred CccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHHHHhcccCcCccH
Confidence 322 35799999999999999999999999999999999999999999999999999999999988874
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=97.32 E-value=0.0021 Score=55.65 Aligned_cols=131 Identities=15% Similarity=0.259 Sum_probs=85.4
Q ss_pred eEEEEEeCChhhHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEecCC--------CceeEEEEeeccCCCCCCccc
Q 018178 72 RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMS--------GFFQGYAQMMSSVGWRRDNVW 143 (360)
Q Consensus 72 RFFIIKS~n~eNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN~S--------g~FqGyArM~S~i~~~~~~~W 143 (360)
+|.|+|| +.+|+...++.|+|-. .+..+...++- +.+..+|||+-+.. ..|.|+|++++.+-...+.+|
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~m-k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~D~t~~~ 78 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSRV-KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVDFSRIF 78 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTTC-CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEECCCCCS
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHhC-CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEeCCCccC
Confidence 5999999 8999999999999977 55444444433 45677788876665 899999999986543333333
Q ss_pred cCCCCCCCCCCCceeeEEEEeeeCCCCcccC----ccCCCCCCCCeeeCCCCcccChhHHHHHHHHh
Q 018178 144 SQGNGKNNPWGRSFKVKWLRLNTLPFQKTLH----LKNPLNDYKPVKISRDCQELPQDIGEALCHLL 206 (360)
Q Consensus 144 ~~~~g~~~~wgg~F~VeWL~v~dLPF~~~~H----LrNplNenKPVk~sRDGQEIe~e~G~qLckLF 206 (360)
.+..-.....--..+|+++.+..+|+..+.. |+|+-+=+..+ .-+--++|+++..+.||+.|
T Consensus 79 ~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 79 KPHRGGKETYPYRVKIKPIKIGEINFKPLINDLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp CCTTSSCCCCCEEEEEEEEEEEEEESGGGGGGCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred CCcccccCCeeEEEeCEEEeeccCcHHHHHhhhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence 2210000122234678999999999886532 33321111222 02337999999999999875
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=96.75 E-value=0.0044 Score=53.69 Aligned_cols=129 Identities=15% Similarity=0.296 Sum_probs=83.6
Q ss_pred ceEEEEEeCChhhHHHHhhcCeeeeccCChHHHHHHHhcCCcEEEEEEec------CCCceeEEEEeeccCCCCCCcccc
Q 018178 71 TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVN------MSGFFQGYAQMMSSVGWRRDNVWS 144 (360)
Q Consensus 71 aRFFIIKS~n~eNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN------~Sg~FqGyArM~S~i~~~~~~~W~ 144 (360)
-+|.|+|+ +.+++...++.|+|-. .+.-+...++-+ .+.-+|||... .-..|.|+|++++..-...+.+|.
T Consensus 4 m~YWL~~s-e~~~~~~~~~~g~wGV-n~~arn~lr~Mk-~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D~t~~dp 80 (147)
T 2p5d_A 4 MAYWLCIT-NEDNWKVIKEKKIWGV-AERYKNTINKVK-VGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKDSSKIFK 80 (147)
T ss_dssp CCEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTTCC-TTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEECCCCCSC
T ss_pred ccceeeec-CHHHHHHHHHcCeeec-CHHHHHHHHhCC-CCCEEEEEEecccCCCCCCCEEEEEEEEecccccCCcccCc
Confidence 47999999 6899999999999976 444444444433 45666667332 345899999999865333333332
Q ss_pred CCCC-CCCCCCCceeeEEEEe--eeCCCCccc----CccCC--CCCCCCeeeCCCCcccChhHHHHHHHH
Q 018178 145 QGNG-KNNPWGRSFKVKWLRL--NTLPFQKTL----HLKNP--LNDYKPVKISRDCQELPQDIGEALCHL 205 (360)
Q Consensus 145 ~~~g-~~~~wgg~F~VeWL~v--~dLPF~~~~----HLrNp--lNenKPVk~sRDGQEIe~e~G~qLckL 205 (360)
...- ..++.--..+|+++.. ..||+..++ ++++. |.+ .-++.+ -++|+++..+.||++
T Consensus 81 ~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~-~L~r~g--v~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 81 PTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSG-HLMGKA--MREIPEEDYKLIVGN 147 (147)
T ss_dssp CBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC---CCCS--EEEECHHHHHHHHTC
T ss_pred CccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHH-HHhcCC--ceECCHHHHHHHHhC
Confidence 2100 0123335789999988 888888765 22232 333 224666 899999999988864
No 5
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=46.73 E-value=29 Score=31.27 Aligned_cols=136 Identities=13% Similarity=0.232 Sum_probs=81.8
Q ss_pred eEEEEEe-------------CChhhHHHHh-hcCeeeec-cCChHHHHHHHhcCCcEEEEEEecCCCceeEEEEeeccC-
Q 018178 72 RYFIIKS-------------LNHQNIQLSI-EKEIWATQ-VMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV- 135 (360)
Q Consensus 72 RFFIIKS-------------~n~eNI~~Si-k~GIWaTt-~~NekkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~i- 135 (360)
+|.++|| ++.+++..+- +...|.=- ...-+.+.++-+.++.|++.-|-.+.....|+|++++..
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~mR~Mk~GD~~fFYHSnck~pgIvGi~eVv~e~y 81 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEAY 81 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHHHHHCCTTCEEEEEECCSSSCEEEEEEEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHHHHHhcCCCCEEEEEecCCCCCeEEEEEEEeeccc
Confidence 4778886 4566766553 34467633 222344555656666666666655888999999999863
Q ss_pred -CCC----CCccccCCCC-CCCCCCCceeeEEEEe--eeCCCCcccCcc-------CCCCCCCCeeeCC-CCcccChhHH
Q 018178 136 -GWR----RDNVWSQGNG-KNNPWGRSFKVKWLRL--NTLPFQKTLHLK-------NPLNDYKPVKISR-DCQELPQDIG 199 (360)
Q Consensus 136 -~~~----~~~~W~~~~g-~~~~wgg~F~VeWL~v--~dLPF~~~~HLr-------NplNenKPVk~sR-DGQEIe~e~G 199 (360)
+.. ...++...+. ...+|. ..+|+-++. ..|+...++... -++.+..-|+.+| --|-|.++.-
T Consensus 82 pD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~PVt~~ew 160 (176)
T 3eop_A 82 PDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEF 160 (176)
T ss_dssp ECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEECHHHH
T ss_pred cCCcccCCCCCCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCceecCHHHH
Confidence 322 1245543221 123453 467777665 346666666543 2455555566666 4578888888
Q ss_pred HHHHHHhcC
Q 018178 200 EALCHLLDG 208 (360)
Q Consensus 200 ~qLckLF~~ 208 (360)
..||++-+-
T Consensus 161 ~~I~~l~~~ 169 (176)
T 3eop_A 161 DFVLSLEEL 169 (176)
T ss_dssp HHHHHGGGC
T ss_pred HHHHHHHhh
Confidence 999888653
No 6
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=45.16 E-value=81 Score=27.84 Aligned_cols=131 Identities=16% Similarity=0.250 Sum_probs=74.6
Q ss_pred eEEEEEeC----ChhhHHHHhhcCeeeeccCCh--HHHHHHHhcCCcEEEEEEecCCCceeEEEEeeccC--CCCC----
Q 018178 72 RYFIIKSL----NHQNIQLSIEKEIWATQVMNE--PILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV--GWRR---- 139 (360)
Q Consensus 72 RFFIIKS~----n~eNI~~Sik~GIWaTt~~Ne--kkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~i--~~~~---- 139 (360)
+|.++||- +.+++.. .+...|. .-+|- +.+.++-+.++.|++.=|-.+.....|+|++++.. +...
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~Wd-GVRNyqArN~mr~Mk~GD~~ffYHS~c~~pgIvGi~eVv~e~ypD~t~fdp~ 79 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWD-GVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPTALDPD 79 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEEC-CCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGCTT
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecC-CcccHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeEccCCCccccccc
Confidence 48889974 5666666 4446786 33333 35555666655555555544889999999999863 3221
Q ss_pred CccccCCCC-CCCCCCCceeeEEEEe--eeCCCCcccCccCCCCCCCCeee-CC-CCcccChhHHHHHHHHh
Q 018178 140 DNVWSQGNG-KNNPWGRSFKVKWLRL--NTLPFQKTLHLKNPLNDYKPVKI-SR-DCQELPQDIGEALCHLL 206 (360)
Q Consensus 140 ~~~W~~~~g-~~~~wgg~F~VeWL~v--~dLPF~~~~HLrNplNenKPVk~-sR-DGQEIe~e~G~qLckLF 206 (360)
..+|...+. ...+| ..++|+-+.. ..|+...++... .+.+..-|+. +| --|.|.++.-..||++=
T Consensus 80 s~YyDpks~~~~prw-~~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l~ 149 (157)
T 2eve_A 80 SHYHDAKATTEKNPW-SALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILALR 149 (157)
T ss_dssp STTCCTTCCSSCCCC-EEEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHHH
T ss_pred CcCcCcccCCCCCCE-EEEEEEEeeecCCccCHHHHhcCc-ccccCceeeccCCcCceecCHHHHHHHHHHh
Confidence 245543221 11233 2455555554 345555544332 2334444444 23 34788888888888763
No 7
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=34.89 E-value=96 Score=27.72 Aligned_cols=132 Identities=16% Similarity=0.231 Sum_probs=74.4
Q ss_pred ceEEEEEeC----ChhhHHHHhhcCeeeeccCCh--HHHHHHHhcCCcEEEEEEecCCCceeEEEEeeccCC--CCC---
Q 018178 71 TRYFIIKSL----NHQNIQLSIEKEIWATQVMNE--PILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVG--WRR--- 139 (360)
Q Consensus 71 aRFFIIKS~----n~eNI~~Sik~GIWaTt~~Ne--kkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~i~--~~~--- 139 (360)
-+|.++||. +.+++.. .....|. .-+|- +.+.++-+.++.|++.-|-.....+.|+|++++... ...
T Consensus 19 M~YWL~KSEP~~~Siddl~~-~~~~~Wd-GVRNyqARN~mr~Mk~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD~t~fdp 96 (172)
T 2ar1_A 19 IHYWLLKSEPHKFSIDDLAK-QKTSPWD-GVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAYDDFTALDK 96 (172)
T ss_dssp CCEEEEEECTTTSCHHHHHH-HSEEECC-CCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGCT
T ss_pred cceEEEEcCCCccCHHHHHh-cCceecc-CcCcHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeeeccCCcccccc
Confidence 469999985 5666666 3335786 33333 345556666666666555558999999999998642 221
Q ss_pred -CccccCCCC-CCCCCCCceeeEEEEe--eeCCCCcccCccCCCCCCCCeeeCC-CCcccChhHHHHHHHHh
Q 018178 140 -DNVWSQGNG-KNNPWGRSFKVKWLRL--NTLPFQKTLHLKNPLNDYKPVKISR-DCQELPQDIGEALCHLL 206 (360)
Q Consensus 140 -~~~W~~~~g-~~~~wgg~F~VeWL~v--~dLPF~~~~HLrNplNenKPVk~sR-DGQEIe~e~G~qLckLF 206 (360)
..+|...+. ...+| ..+.|+-+.. ..|+...++... .+.+..-|+.+| --|-|.++.-..||++-
T Consensus 97 ~s~YyDpks~~~~prw-~~VdV~~v~~~~~pvtL~eLK~~~-~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~ 166 (172)
T 2ar1_A 97 TSEYFDPKATKEKNPW-KMVDVKFVARWDTVLTLHELKSRR-ELQKMALFTQRRLSVQPVSASEYAYILRMN 166 (172)
T ss_dssp TSTTCCTTCCSSCCCC-EEEEEEEEEEEEEEEEHHHHTTCG-GGTTCHHHHCSSCSEEEECHHHHHHHHHHH
T ss_pred cCcccCcccCCCCCCe-EEEEEEEeeecCCcccHHHHhcCc-ccccCeeeeccCCCceecCHHHHHHHHHhh
Confidence 245543221 11233 2455555543 344444444332 233333344443 34677888888888775
No 8
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=21.41 E-value=13 Score=29.71 Aligned_cols=15 Identities=47% Similarity=0.607 Sum_probs=12.1
Q ss_pred CCeeeCCCCcccChh
Q 018178 183 KPVKISRDCQELPQD 197 (360)
Q Consensus 183 KPVk~sRDGQEIe~e 197 (360)
-.+++.||||||+-+
T Consensus 8 itikiqrdgqeieid 22 (96)
T 2jvf_A 8 ITIKIQRDGQEIEID 22 (96)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred EEEEEeeCCeEEEEE
Confidence 458899999998753
No 9
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=14.95 E-value=2e+02 Score=23.92 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=28.6
Q ss_pred ChHHHHHHHhcCCcEEEEEEecCCCceeEEEEeecc
Q 018178 99 NEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSS 134 (360)
Q Consensus 99 NekkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~ 134 (360)
.+..|.+.|...+.|.=+.-+.+++.||||-+|.+.
T Consensus 41 te~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~ 76 (130)
T 3zzy_A 41 TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 76 (130)
T ss_dssp CHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCH
T ss_pred CHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCH
Confidence 467799999988887655555678899999999864
No 10
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=14.23 E-value=1.8e+02 Score=25.24 Aligned_cols=124 Identities=15% Similarity=0.200 Sum_probs=68.2
Q ss_pred eEEEEEeC----ChhhHHHHhhc-CeeeeccCCh--HHHHHHHhcCCcEEEEEEecCCCceeEEEEeeccC--CCCCCcc
Q 018178 72 RYFIIKSL----NHQNIQLSIEK-EIWATQVMNE--PILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV--GWRRDNV 142 (360)
Q Consensus 72 RFFIIKS~----n~eNI~~Sik~-GIWaTt~~Ne--kkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~i--~~~~~~~ 142 (360)
+|.++||- +.+++...-.. ..|. .-+|- +.+.++-+.++.| |||--|....+.|+|++++.. |...+
T Consensus 2 ~YWL~KsEP~~~Siddl~~~~~~~~~Wd-GVRNyqArn~mr~Mk~GD~~-ffYHS~~~~gIvGi~eVv~e~ypD~t~~-- 77 (145)
T 2gbs_A 2 AYWLVKSEPSVWSWDQQVAKGAAGEAWT-GVRNHSAKLHMVAMRRGDRA-FYYHSNEGKEIVGIAEIIREAYPDPTDA-- 77 (145)
T ss_dssp CEEEEEECTTTSCHHHHHTTTTTCEECC-CCCCHHHHHHHHHCCTTCEE-EEEETTTTCEEEEEEEEEEEEEECTTCT--
T ss_pred ceEEEEcCCCcCCHHHHHhcCcccceeC-CcccHHHHHHHHhcCCCCEE-EEEEeCCCCceEEEEEEEEeccCCCCCC--
Confidence 48899985 44555543321 3486 33333 3444455555555 555556899999999999875 33221
Q ss_pred ccCCCCCCCCCCCceeeEEEEe--eeCCCCcccCccCCCCCCCCeeeCC-CCcccChhHHHHHHHHhcC
Q 018178 143 WSQGNGKNNPWGRSFKVKWLRL--NTLPFQKTLHLKNPLNDYKPVKISR-DCQELPQDIGEALCHLLDG 208 (360)
Q Consensus 143 W~~~~g~~~~wgg~F~VeWL~v--~dLPF~~~~HLrNplNenKPVk~sR-DGQEIe~e~G~qLckLF~~ 208 (360)
..+| ..+.|+-+.. ..|+...++... .+.+..-|+.+| --|.|.++.-..||++-..
T Consensus 78 -------~prw-~~VdV~~v~~~~~pvtL~elK~~~-~L~~m~lvr~~RLSV~pVt~~ew~~I~~l~~~ 137 (145)
T 2gbs_A 78 -------SGKF-VCVDIKADKPLKTPVTLAAVKAEP-RLADMALMKYSRLSVQPVTAEEWKLVCKMGGL 137 (145)
T ss_dssp -------TSCS-EEEEEEEEEEEEEEEEHHHHHHCT-TGGGSHHHHCTTCSSEEECHHHHHHHHHHTTC
T ss_pred -------CCCE-EEEEEEEceecCCcccHHHHhcCc-CcccCeeeeccCCCceeeCHHHHHHHHHhhcc
Confidence 1233 2355555543 344444443221 122333334443 3467888888888887654
Done!