BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018180
(359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24K03|THUM1_BOVIN THUMP domain-containing protein 1 OS=Bos taurus GN=THUMPD1 PE=2
SV=1
Length = 357
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 20/159 (12%)
Query: 211 IEAELK-ELGD------KNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVAS 263
+EA LK E+GD RRF +++SG N V ++ I+ P+ +V H++ +
Sbjct: 95 VEAALKKEVGDIKASTEMRLRRFQSVESGANNVVFIRTLGIE----PEKLVHHILQDIYK 150
Query: 264 TRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQK--FAVLYEARANS 321
T+K +R ILR+LPI C E++ + + + +F ++P K F ++Y++R NS
Sbjct: 151 TKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF----KAPNKGTFQIVYKSRNNS 206
Query: 322 GIDRMKIINAVA---KSVPAPHKVDLSNPDKTIVVEIVK 357
++R ++I +A S+ + +KVDLSNP T+VVEI+K
Sbjct: 207 HMNREEVIKELAGIVGSLNSENKVDLSNPQYTVVVEIIK 245
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 5 KGKKRRQFLPHNRPVKKKGAYP--LRPGIQGFFITCDGGRERQASHEAIYVLDSFYEEL 61
K K + Q++ R + G P L PGIQG ITC+ ER+ EA +L+ + +++
Sbjct: 15 KRKGKAQYVQAKRARRWDGGGPRQLEPGIQGILITCN-MNERKCVEEAYSLLNEYGDDM 72
>sp|Q99J36|THUM1_MOUSE THUMP domain-containing protein 1 OS=Mus musculus GN=Thumpd1 PE=1
SV=1
Length = 350
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 93/158 (58%), Gaps = 20/158 (12%)
Query: 212 EAELK-ELGD------KNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVAST 264
EA LK E+GD K RRF +++SG N V ++ I+ P+ +V H++ + T
Sbjct: 96 EAALKKEVGDIKASTEKRLRRFQSVESGANNVVFIRTLGIE----PEKLVHHILQDMYKT 151
Query: 265 RKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQK--FAVLYEARANSG 322
+K +R ILR+LPI C E++ + + + +F ++P K F ++Y++R NS
Sbjct: 152 KKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF----KAPNKGTFQIVYKSRNNSH 207
Query: 323 IDRMKIINAVA---KSVPAPHKVDLSNPDKTIVVEIVK 357
++R ++I +A S+ + +KVDL+NP+ T+VVEI+K
Sbjct: 208 MNREEVIKELAGIVGSLNSENKVDLTNPEYTVVVEIIK 245
Score = 38.9 bits (89), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 2 AADKGKKRRQFLPHNRPVKKKGAYP--LRPGIQGFFITCDGGRERQASHEAIYVLDSFYE 59
A K K + QFLP R + P L PG+QG ITC+ ER+ EA +L+ + +
Sbjct: 12 VAGKRKGKSQFLPAKRARRGDAGGPRQLEPGLQGILITCNMN-ERKCVEEAYSLLNEYGD 70
Query: 60 EL 61
++
Sbjct: 71 DM 72
>sp|Q9NXG2|THUM1_HUMAN THUMP domain-containing protein 1 OS=Homo sapiens GN=THUMPD1 PE=1
SV=2
Length = 353
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 20/158 (12%)
Query: 212 EAELK-ELGD------KNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVAST 264
EA LK E+GD RRF +++SG N V ++ I+ P+ +V H++ + T
Sbjct: 96 EAALKKEVGDIKASTEMRLRRFQSVESGANNVVFIRTLGIE----PEKLVHHILQDMYKT 151
Query: 265 RKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQK--FAVLYEARANSG 322
+K +R ILR+LPI C E++ + + + +F ++P K F ++Y++R NS
Sbjct: 152 KKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF----KAPNKGTFQIVYKSRNNSH 207
Query: 323 IDRMKIINAVAK---SVPAPHKVDLSNPDKTIVVEIVK 357
++R ++I +A ++ + +KVDL+NP T+VVEI+K
Sbjct: 208 VNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIK 245
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 5 KGKKRRQFLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEEL 61
KGK + R G L PG+QG ITC+ ER+ EA +L+ + +++
Sbjct: 17 KGKAQYVLAKRARRCDAGGPRQLEPGLQGILITCNMN-ERKCVEEAYSLLNEYGDDM 72
>sp|Q9VZD8|THUM1_DROME THUMP domain-containing protein 1 homolog OS=Drosophila
melanogaster GN=CG15014 PE=1 SV=2
Length = 324
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 80/147 (54%), Gaps = 10/147 (6%)
Query: 216 KELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRV 275
+E+ + K RF N+D+ ++ + D P + +H++ +A+T K +SR +LR+
Sbjct: 114 REMLSQRKMRFQNVDTNTTNCVFIRTQLED----PVALGKHIINDIATTGKSMSRFVLRL 169
Query: 276 LPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKS 335
+PIE+ C + +I A L ++F E P + +++ R N I R +II +A+
Sbjct: 170 VPIEVVCRANMPDIITAAGELFDKHFLKE---PTSYGIIFNHRYNQQIKRDQIITQLAEL 226
Query: 336 VPAP---HKVDLSNPDKTIVVEIVKDY 359
V + +KVDL K+I+VE+++ +
Sbjct: 227 VNSKNVGNKVDLKEAKKSIIVEVLRGW 253
>sp|P53072|TAN1_YEAST tRNA acetyltransferase TAN1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=TAN1 PE=1 SV=1
Length = 289
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 28/182 (15%)
Query: 199 NDKVEEQSIDKLIEAELKEL-----------GDKNKR---RFINLDSGCNGVAVVQMRKI 244
ND+ ++ SI+ I+ EL+EL G+ K+ FI+L+ C V + RK
Sbjct: 74 NDEKKDLSIEDQIKKELQELKGEETGKDLSSGETKKKDPLAFIDLNCEC--VTFCKTRK- 130
Query: 245 DGDPSPKDIVQHMMTSVASTRKPISRS--ILRVLPIELACYTSEEEISRAIKPLVAQYF- 301
P++ V +M +A + + R+ + ++ PI +C E++ + ++ +F
Sbjct: 131 --PIVPEEFVLSIMKDLADPKNMVKRTRYVQKLTPITYSCNAKMEQLIKLANLVIGPHFH 188
Query: 302 -PLETQSPQKFAVLYEARANSGIDRMKIINAVAKSV-----PAPHKVDLSNPDKTIVVEI 355
P + KFAV R + I+RM IIN V K V H VDL N DK I+VE
Sbjct: 189 DPSNVKKNYKFAVEVTRRNFNTIERMDIINQVVKLVNKEGSEFNHTVDLKNYDKLILVEC 248
Query: 356 VK 357
K
Sbjct: 249 FK 250
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 15 HNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEEL 61
NR K + L PG G + TC ERQA+ E + + ++EL
Sbjct: 15 QNRKKFKVSSGFLDPGTSGIYATCSRRHERQAAQELQLLFEEKFQEL 61
>sp|O94248|MDN1_SCHPO Midasin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mdn1 PE=1 SV=1
Length = 4717
Score = 40.8 bits (94), Expect = 0.018, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 26/186 (13%)
Query: 59 EELVHGKGSGVKPAGIPNKP-LNKKIVFASSSDDEDDDDNN-VGEKEEAVEGEGKDKEG- 115
EEL G+ + I N P ++ K FAS+ DE++ D VGE EE E +G + G
Sbjct: 4184 EELEQGEVP--EDQAIDNHPKMDAKSTFASAEADEENTDKGIVGENEELGEEDGAAESGV 4241
Query: 116 -------GE----DQKGEGKHSDTCK----DDDRSHENLTNKKTDPHDAEKVCSGKEMEA 160
GE +Q +G+ + T K + DR +++L + + A ++ +++
Sbjct: 4242 RGNGTADGEFSSAEQVQKGEDTSTPKEAMSEADRQYQSLGDHLREWQQANRIHEWEDLTE 4301
Query: 161 VTAENKEDDKNHESQTNEAEEPPAKKQCLEAGASKSVNNDKVEEQSIDKL-----IEAEL 215
++ +D + + +E E+ A E KS++ D+ Q+ D + E E
Sbjct: 4302 SQSQAFDDSEFMHVKEDEEEDLQALGNA-EKDQIKSIDRDESANQNPDSMNSTNIAEDEA 4360
Query: 216 KELGDK 221
E+GDK
Sbjct: 4361 DEVGDK 4366
>sp|P87151|YB0A_SCHPO Uncharacterized protein C25H2.10c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC25H2.10c PE=4 SV=2
Length = 287
Score = 38.5 bits (88), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 12/152 (7%)
Query: 211 IEAELKELGDKNKRRF---INLDSGCNGVAVVQMRKIDGDPSPKDIVQHM-MTSVASTRK 266
+ E+ L KNK+ I LD C V V+ R P D V+ + T K
Sbjct: 88 VAKEINSLQKKNKKELLTPIMLDMPC--VYFVKTR------PPIDPVRLVEFTCEVGKTK 139
Query: 267 PISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRM 326
++R R++PI S +++ K L+ F + ++FAV R ++ + +
Sbjct: 140 KMTRYTQRLIPIVRTTGVSLDDLEELAKSLIDPLFHEGQEGIKEFAVQANIRNHTVLKKD 199
Query: 327 KIINAVAKSVPAPHKVDLSNPDKTIVVEIVKD 358
I VA+ V H VDL N I+V+++K+
Sbjct: 200 DIYRTVARIVGKQHMVDLKNFKLLILVQVIKN 231
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 38.5 bits (88), Expect = 0.085, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 88 SSDDEDDDDNNVGEKEEAVEGEGKDKEG----GEDQKGEGKHSDTCKDDDRSHENLTNKK 143
+++DE + N E E+AVE +D++ ED+K K+++ K +++ E+ +
Sbjct: 4114 NTEDEKAVEKNT-EDEKAVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVEKNTEDEKAIE 4172
Query: 144 TDPHDAEKVCSGKEMEAVTAENKEDDKNHESQTNEAEEPPAKKQCLEAGASKSVNNDKVE 203
+ D + V E E +N ED+K E T E E+ K E K+ ++KV
Sbjct: 4173 KNTEDEKAVEKNTEDEKAVEQNTEDEKVVEENT-EDEKAVEKNTEDEKAVEKNTEDEKVV 4231
Query: 204 EQSID 208
E+ I+
Sbjct: 4232 EEKIE 4236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.130 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,746,029
Number of Sequences: 539616
Number of extensions: 6558299
Number of successful extensions: 43800
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 1224
Number of HSP's that attempted gapping in prelim test: 29659
Number of HSP's gapped (non-prelim): 9463
length of query: 359
length of database: 191,569,459
effective HSP length: 119
effective length of query: 240
effective length of database: 127,355,155
effective search space: 30565237200
effective search space used: 30565237200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)