Query 018180
Match_columns 359
No_of_seqs 139 out of 358
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 06:49:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3943 THUMP domain-containin 100.0 1.6E-36 3.6E-41 284.6 14.6 150 203-359 101-256 (291)
2 PF02926 THUMP: THUMP domain; 99.7 1.8E-16 3.8E-21 133.8 6.8 88 268-358 46-136 (144)
3 COG1818 Predicted RNA-binding 99.5 6.5E-14 1.4E-18 127.5 12.5 133 206-358 11-145 (175)
4 PRK01565 thiamine biosynthesis 99.1 1.1E-09 2.5E-14 109.7 12.8 107 234-358 46-156 (394)
5 PRK08384 thiamine biosynthesis 98.9 2.2E-08 4.7E-13 100.9 13.0 90 268-358 68-160 (381)
6 PRK01269 tRNA s(4)U8 sulfurtra 98.8 3.7E-08 7.9E-13 101.3 13.9 87 267-358 68-157 (482)
7 TIGR00342 thiazole biosynthesi 98.8 7.5E-08 1.6E-12 96.0 12.7 86 267-358 64-152 (371)
8 COG0301 ThiI Thiamine biosynth 98.7 1.5E-07 3.3E-12 95.0 11.2 86 268-358 66-155 (383)
9 COG0116 Predicted N6-adenine-s 96.7 0.018 4E-07 58.8 11.8 128 205-358 11-148 (381)
10 PRK11783 rlmL 23S rRNA m(2)G24 95.8 0.16 3.5E-06 55.2 13.8 127 205-358 10-146 (702)
11 TIGR01177 conserved hypothetic 95.5 0.041 8.8E-07 53.9 7.3 72 281-357 61-133 (329)
12 TIGR01213 conserved hypothetic 62.4 12 0.00026 38.8 4.9 73 280-356 57-148 (388)
13 KOG2671 Putative RNA methylase 59.3 27 0.00058 36.4 6.6 68 281-353 70-144 (421)
14 COG3526 Uncharacterized protei 48.0 9.2 0.0002 32.2 1.1 18 23-40 38-56 (99)
15 COG1258 Predicted pseudouridyl 39.5 25 0.00054 36.6 2.9 32 325-356 121-154 (398)
16 PF13590 DUF4136: Domain of un 37.8 47 0.001 28.0 3.9 50 307-356 16-69 (151)
17 PF05109 Herpes_BLLF1: Herpes 35.7 16 0.00034 39.8 0.8 23 26-48 219-241 (830)
18 KOG4032 Uncharacterized conser 32.8 52 0.0011 31.0 3.6 46 28-83 72-124 (184)
19 PF10489 RFPL3_antisense: Ret 32.6 24 0.00052 30.8 1.3 22 9-31 48-69 (124)
20 PRK14761 ryhB-regulated fur le 31.0 47 0.001 22.0 2.1 25 313-337 2-26 (28)
21 PF06524 NOA36: NOA36 protein; 27.9 37 0.00081 34.0 1.9 6 22-27 214-219 (314)
22 KOG0788 S-adenosylmethionine d 27.4 38 0.00082 34.5 1.9 51 26-93 116-166 (334)
23 PF06524 NOA36: NOA36 protein; 27.3 52 0.0011 33.0 2.7 10 39-48 155-164 (314)
24 cd04904 ACT_AAAH ACT domain of 26.0 1.2E+02 0.0026 23.4 4.1 28 28-57 39-66 (74)
25 PRK14554 putative pseudouridyl 25.0 52 0.0011 34.6 2.4 31 325-355 147-179 (422)
26 PF15243 ANAPC15: Anaphase-pro 20.9 94 0.002 26.3 2.7 8 78-85 53-60 (92)
27 COG1491 Predicted RNA-binding 20.2 54 0.0012 31.3 1.3 24 11-34 23-46 (202)
No 1
>KOG3943 consensus THUMP domain-containing proteins [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=284.57 Aligned_cols=150 Identities=31% Similarity=0.501 Sum_probs=131.5
Q ss_pred cccCHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhh--cCCCcccceEEeeeeeE
Q 018180 203 EEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVAS--TRKPISRSILRVLPIEL 280 (359)
Q Consensus 203 ee~DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~--tk~~~TRfI~RLiPIq~ 280 (359)
.+++|-+.|.+=- +.+++.|..++.+|+||.|++++++ +-|.++|+.|++++.+ ++..+|||||||+||++
T Consensus 101 kdEe~gddLk~~~----~~~~~P~~Fv~~~~~Cv~f~~t~Kn---iVpe~~v~~i~~dm~elk~k~kRtR~~Qr~~Pi~~ 173 (291)
T KOG3943|consen 101 KDEEVGDDLKAST----EMRLRPFQFVESGANCVVFIRTLKN---IVPEKLVHHILQDMYELKTKKKRTRVIQRMLPISG 173 (291)
T ss_pred hhhhhHHHHhhhh----hhhcCchhhhhccCceEEeecccCc---cCchHHHHHHHHHHHhhhccchhhhhhhhhccccc
Confidence 4455555555422 2245569999999999999999986 9999999999999985 67899999999999999
Q ss_pred EeeCCHHHHHHHHHHHHHhhCCCC-CCCCceEEEEEEecCCCCCCHHHHHHHHHhcCC---CCCcccCCCCCeEEEEEEe
Q 018180 281 ACYTSEEEISRAIKPLVAQYFPLE-TQSPQKFAVLYEARANSGIDRMKIINAVAKSVP---APHKVDLSNPDKTIVVEIV 356 (359)
Q Consensus 281 tC~A~leeI~k~ak~Ll~k~F~~e-~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~---~~hKVDLkNPD~tIlVEVi 356 (359)
||.|.|+.|.++|..+|.+||+.. +.+..||+|+|++|||+++.|++||+.|+.+|- +..+|||+|||++|+|||+
T Consensus 174 tc~a~le~m~k~a~~VI~p~fkap~tgK~~tf~VE~k~RNn~~v~r~~vi~~V~~~Vc~l~se~~VdL~n~D~t~~Ve~~ 253 (291)
T KOG3943|consen 174 TCKAFLEDMKKYAETVIEPWFKAPNTGKKGTFQVEYKSRNNSHVNREEVIREVAGIVCTLNSENKVDLTNPDYTVVVEII 253 (291)
T ss_pred hHHhhHHHHHHHHHHhhcccccCCCCCcCceEEEEEEeccccchhHHHHHHHHHHHHHhcCccceeeccCCCeEEEEEee
Confidence 999999999999999999999863 446779999999999999999999999999984 5789999999999999999
Q ss_pred ccC
Q 018180 357 KDY 359 (359)
Q Consensus 357 Knv 359 (359)
|++
T Consensus 254 ks~ 256 (291)
T KOG3943|consen 254 KAV 256 (291)
T ss_pred ece
Confidence 863
No 2
>PF02926 THUMP: THUMP domain; InterPro: IPR004114 The THUMP domain is shared by 4-thiouridine, pseudouridine synthases and RNA methylases[] and is probably an RNA-binding domain that adopts an alpha/beta fold similar to that found in the C-terminal domain of translation initiation factor 3 and ribosomal protein S8. The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets []. This domain is found in the thiamine biosynthesis proteins (ThiI) (see IPR003720 from INTERPRO).; PDB: 3TLJ_A 3TM5_B 3TM4_A 2DIR_A 3TMA_A 1VBK_B 3K0B_A 2C5S_A 3LDU_A 3V8V_B ....
Probab=99.65 E-value=1.8e-16 Score=133.83 Aligned_cols=88 Identities=36% Similarity=0.461 Sum_probs=79.3
Q ss_pred cccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCC-CCCHHHHHHHHHhcCCC--CCcccC
Q 018180 268 ISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANS-GIDRMKIINAVAKSVPA--PHKVDL 344 (359)
Q Consensus 268 ~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns-~LsRdeVI~~VA~lV~~--~hKVDL 344 (359)
.+|+++|++|++..|.+++++|.+.|..++..++... ..||+|++++|+++ .++++++.+.||++|.. +++|||
T Consensus 46 ~~~~~~ri~p~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~tF~V~~~r~~~~~~~~s~ei~~~vg~~i~~~~~~~Vdl 122 (144)
T PF02926_consen 46 KLRGISRIIPICRFCEADLEEIKEKAKELLWEKFIKE---DKTFAVRCRRRGKHFPFTSMEIEREVGDAIKEKGGPKVDL 122 (144)
T ss_dssp HSSSESEEEEEEEEEESSHHHHHHHHHCSHGGGHSHT---TSEEEEEEEEESSSSSSCHHHHHHHHHHHHHHHHHTEE-S
T ss_pred cccceeEEEEEEEEcCCCHHHHHHHHHHHHHHHhCCC---CCEEEEEEEEcCCccccCHHHHHHHHHHHHHHHhCCCccC
Confidence 5679999999999999999999999999999888642 23999999999999 99999999999999964 479999
Q ss_pred CCCCeEEEEEEecc
Q 018180 345 SNPDKTIVVEIVKD 358 (359)
Q Consensus 345 kNPD~tIlVEViKn 358 (359)
+|||++|.|||+++
T Consensus 123 ~~Pd~~i~Vev~~~ 136 (144)
T PF02926_consen 123 KNPDVVIHVEVRKD 136 (144)
T ss_dssp SSSSEEEEEEEETT
T ss_pred cCcCEEEEEEEECC
Confidence 99999999999986
No 3
>COG1818 Predicted RNA-binding protein, contains THUMP domain [General function prediction only]
Probab=99.54 E-value=6.5e-14 Score=127.53 Aligned_cols=133 Identities=23% Similarity=0.339 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeCC
Q 018180 206 SIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTS 285 (359)
Q Consensus 206 DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A~ 285 (359)
+.+.+...||..+-. ...-....+|+.|+++++.. .+...++.. ......+.|++|+...|.++
T Consensus 11 ~~e~~~~~ei~~~~~--~~~~~~~~~g~~gvliv~~~-----~d~~~~~~~---------~~~~~~~~rv~pv~~~~~~d 74 (175)
T COG1818 11 GFERQAREEIKEIIG--DLEAEPRPTGFPGVLIVESE-----LDEEEALEK---------LKEVPEVERVIPVEIEVETD 74 (175)
T ss_pred CccHHHHHHHHhhcc--cccccccccCCceEEEEEcc-----CcHHHHHHH---------hcCCCceeeEEEEEeeccCC
Confidence 456667777777765 23446789999999999874 233322221 23678999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCCC--CCcccCCCCCeEEEEEEecc
Q 018180 286 EEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPA--PHKVDLSNPDKTIVVEIVKD 358 (359)
Q Consensus 286 leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~~--~hKVDLkNPD~tIlVEViKn 358 (359)
+++|..+|..++..+.. .+.||||++++|+.+.|++.++.-.++..|.. +..|||++||++|.|||+++
T Consensus 75 ldeI~~~~~~l~~~~i~----~~~tFaVr~~rRG~~~f~s~~~~v~vg~~v~~~tg~~VdL~~Pd~vv~Vevl~~ 145 (175)
T COG1818 75 LDEIEEAAAELAEEKIK----EGKTFAVRTKRRGKHDFTSRDVEVVVGEAVKKATGAEVDLEDPDKVVWVEVLGD 145 (175)
T ss_pred HHHHHHHHHHHHhcccC----CCCeEEEEEeecCCCCccccceeehhHHHHHHHhCCcccCCCCCEEEEEEEecC
Confidence 99999999999998776 47899999999999999999999999999975 89999999999999999986
No 4
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=99.08 E-value=1.1e-09 Score=109.70 Aligned_cols=107 Identities=20% Similarity=0.286 Sum_probs=88.2
Q ss_pred CeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEE
Q 018180 234 NGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAV 313 (359)
Q Consensus 234 kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI 313 (359)
.+-+||.+.. .++.++...+ .++-.|.++.|+. .|.+++++|.+++..++..+.. ...||+|
T Consensus 46 ~~r~~v~~~~----~~~~~~~~~l---------~~vfGI~~~s~~~-~~~~~~e~I~~~~~~~~~~~~~----~~~tF~V 107 (394)
T PRK01565 46 RDRMYIELNG----EDYEEVIERL---------KKVFGIQSFSPVY-KVEKDLEAIKEAALELLKEVYK----EGKTFKV 107 (394)
T ss_pred CCEEEEEeCC----cCHHHHHHHH---------hhCCCcceEEEEE-EECCCHHHHHHHHHHHHHhhcc----CCCcEEE
Confidence 3678887632 3455554433 3688999999997 5889999999999999987643 3579999
Q ss_pred EEEecCCC-CCCHHHHHHHHHhcCCC---CCcccCCCCCeEEEEEEecc
Q 018180 314 LYEARANS-GIDRMKIINAVAKSVPA---PHKVDLSNPDKTIVVEIVKD 358 (359)
Q Consensus 314 ~~krRnns-~LsRdeVI~~VA~lV~~---~hKVDLkNPD~tIlVEViKn 358 (359)
+.+|++++ .++|++|.+.||+.|.. +.+|||+|||++|.|||.++
T Consensus 108 r~rR~~k~f~~tS~ei~r~vG~~I~~~~~~~~VdL~nPd~~i~vei~~~ 156 (394)
T PRK01565 108 EARRSDKSFPLDSMELNRELGAYILENFPNLKVDVKNPDVTLRVEVRKE 156 (394)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHhhCCCCcccccCCCeEEEEEEEcC
Confidence 99999988 99999999999999864 48999999999999999875
No 5
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.88 E-value=2.2e-08 Score=100.88 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=76.3
Q ss_pred cccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCC-CCCCHHHHHHHHHhcCCC--CCcccC
Q 018180 268 ISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARAN-SGIDRMKIINAVAKSVPA--PHKVDL 344 (359)
Q Consensus 268 ~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnn-s~LsRdeVI~~VA~lV~~--~hKVDL 344 (359)
+.-.|..+.|+ ..|..++++|.++|..++..++......+.||+|+++|++. ..++|++|.+.||+.|.. +.+|||
T Consensus 68 ~vfGI~~~s~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~tF~V~~rR~~k~f~~tS~ei~~~vG~~i~~~~~~~Vdl 146 (381)
T PRK08384 68 RVFGIVSLSPA-MEIDAELEKINRTALKLFRRKKRELELEKPRFRVTARRITKEFPLKSPEIQAKVGEYILENEESEVDL 146 (381)
T ss_pred hCCCceeEEEE-EEeCCCHHHHHHHHHHHHHHhhhcccccCCeEEEEEEeCCCCCCCChHHHHHHHHHHHHhcCCCCccC
Confidence 57789999998 45778999999999999988753211134699999999996 599999999999999843 589999
Q ss_pred CCCCeEEEEEEecc
Q 018180 345 SNPDKTIVVEIVKD 358 (359)
Q Consensus 345 kNPD~tIlVEViKn 358 (359)
+|||++|.|||.++
T Consensus 147 ~~Pd~~i~vEir~~ 160 (381)
T PRK08384 147 HNYDIEVGVELMEG 160 (381)
T ss_pred cCCCEEEEEEEEeC
Confidence 99999999999765
No 6
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.85 E-value=3.7e-08 Score=101.31 Aligned_cols=87 Identities=23% Similarity=0.281 Sum_probs=78.0
Q ss_pred CcccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCC---CCCccc
Q 018180 267 PISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVP---APHKVD 343 (359)
Q Consensus 267 ~~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~---~~hKVD 343 (359)
.+.-.|.+++|+..++..++++|.+.|..++..++. ..||+|+.+|++++.+++++|...||+.|. .+.+||
T Consensus 68 ~~vfGi~~~~~v~~~~~~~~e~I~~~a~~~~~~~~~-----~~tF~VrarR~~k~~~~S~ei~r~vG~~I~~~~~~~~Vd 142 (482)
T PRK01269 68 TRIPGIHHFLEVEEYPFTDLHDIFEKALALYREQLE-----GKTFCVRVKRRGKHDFTSIDVERYVGGGLNQHIESAGVD 142 (482)
T ss_pred hcCCCceEEEEEEEECCCCHHHHHHHHHHHHHHhcC-----CCeEEEEEEeCCCCCCChHHHHHHHHHHHHHhCCCCcee
Confidence 368899999999888878999999999999998864 459999999999889999999999999993 258999
Q ss_pred CCCCCeEEEEEEecc
Q 018180 344 LSNPDKTIVVEIVKD 358 (359)
Q Consensus 344 LkNPD~tIlVEViKn 358 (359)
|+|||++|.|||.++
T Consensus 143 L~nPD~~i~VeI~~d 157 (482)
T PRK01269 143 LKNPDVTVHLEIRDD 157 (482)
T ss_pred CCCCCEEEEEEEECC
Confidence 999999999999875
No 7
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.77 E-value=7.5e-08 Score=96.02 Aligned_cols=86 Identities=24% Similarity=0.332 Sum_probs=73.3
Q ss_pred CcccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCC-CCCHHHHHHHHHhcCCC--CCccc
Q 018180 267 PISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANS-GIDRMKIINAVAKSVPA--PHKVD 343 (359)
Q Consensus 267 ~~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns-~LsRdeVI~~VA~lV~~--~hKVD 343 (359)
.+.-.|..+.|+ ..|.+++++|. .+..++..+... ..||+|+.+|++++ ++++++|.+.||+.|.. +.+||
T Consensus 64 ~~vfGi~~~s~~-~~~~~~~~~i~-~~~~~~~~~~~~----~~tF~Vr~kR~~k~f~~~S~ei~r~~G~~i~~~~~~~Vd 137 (371)
T TIGR00342 64 TKIPGIVSFSPA-FKCDLPFDEIH-ILLKALKQLRKE----GKTFKVRTKRRGKDFPLNSVEVNKYVGGGIVEKIGLKVD 137 (371)
T ss_pred hcCCCccEEEEE-EEECCCHHHHH-HHHHHHHHhhcc----CCcEEEEEEECCCCCCCChHHHHHHHHHHHHHHcCCccc
Confidence 367889999998 57788999999 888888876532 46999999999864 67799999999999953 58999
Q ss_pred CCCCCeEEEEEEecc
Q 018180 344 LSNPDKTIVVEIVKD 358 (359)
Q Consensus 344 LkNPD~tIlVEViKn 358 (359)
|+|||++|.|||.++
T Consensus 138 L~nPd~~i~vei~~~ 152 (371)
T TIGR00342 138 LTNPDITVHIEIRED 152 (371)
T ss_pred ccCCCEEEEEEEECC
Confidence 999999999999875
No 8
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=98.66 E-value=1.5e-07 Score=95.01 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=74.8
Q ss_pred cccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCC-CCCCHHHHHHHHHhcCCC---CCccc
Q 018180 268 ISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARAN-SGIDRMKIINAVAKSVPA---PHKVD 343 (359)
Q Consensus 268 ~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnn-s~LsRdeVI~~VA~lV~~---~hKVD 343 (359)
+.-.|+.+.|+ ..|..+++++...+..++..... .+.||+|+.+|+++ +.|++.+|.+.||+.|-. ..+||
T Consensus 66 ~vfGI~s~sp~-~~v~~~~~~i~~~~~~~~~~~~~----~g~tF~V~arR~~k~f~~~S~ev~~~vG~~i~~~~~~~~Vd 140 (383)
T COG0301 66 RVFGIVSFSPA-MEVEASLEEIIKAALLALRRKYK----EGKTFKVRARRAGKEFPFTSLEVNRYVGEAILENIESAGVD 140 (383)
T ss_pred hcCCcceecee-EEecCCcHHHHHHHHHHHHHhhh----cCCeEEEEEEeCCCCCCCCHHHHHHHHHHHHHhhcccceee
Confidence 67789999999 77888888888888888877654 36699999999998 899999999999998853 69999
Q ss_pred CCCCCeEEEEEEecc
Q 018180 344 LSNPDKTIVVEIVKD 358 (359)
Q Consensus 344 LkNPD~tIlVEViKn 358 (359)
|+|||++|.|||..+
T Consensus 141 l~~Pdv~i~iEIr~~ 155 (383)
T COG0301 141 LKNPDVEIHIEIRED 155 (383)
T ss_pred cCCCCeEEEEEEecC
Confidence 999999999999754
No 9
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.018 Score=58.77 Aligned_cols=128 Identities=26% Similarity=0.344 Sum_probs=90.2
Q ss_pred cCHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeC
Q 018180 205 QSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYT 284 (359)
Q Consensus 205 ~DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A 284 (359)
..+|+.+.+||.+|+-... ...-..+|.|- - + .+++.++. .-+|-+.|+.=+-..|++
T Consensus 11 ~GLE~~~~~El~~lg~~e~-----~~~~~ggV~f~-g-----d---~~~~~~~n--------lwsRta~Ri~i~l~~fk~ 68 (381)
T COG0116 11 RGLEDLLARELEELGAEEV-----AKVVNGGVHFE-G-----D---VELIYRAN--------LWSRTASRILLPLGEFKA 68 (381)
T ss_pred CcHHHHHHHHHHhcCceec-----cceeeccEEEe-c-----c---HHHHHHHh--------HHHHHHHhhheeeeeeee
Confidence 4689999999988875421 01112344443 1 1 22222221 245566676655577774
Q ss_pred -CHHHHHHHHHHH-HHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCC--------CCCcccCCCCCeEEEEE
Q 018180 285 -SEEEISRAIKPL-VAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVP--------APHKVDLSNPDKTIVVE 354 (359)
Q Consensus 285 -~leeI~k~ak~L-l~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~--------~~hKVDLkNPD~tIlVE 354 (359)
+.++|-..+..+ +..||+. ..||+|++++-+.+..++.++-..|.++|- ..-.|||..||+.|-|+
T Consensus 69 ~~~~dly~~v~~i~w~~~~~~----~~tf~V~~~~~~~~~~~s~~~a~~vkdAIvd~~~~~~~~r~~v~~~~Pdv~i~v~ 144 (381)
T COG0116 69 ETLDDLYEAVKAINWEEYFPE----GATFAVRFRGVGSHLFTSPDIARIVKDAIVDRFRRKYGRRPSVDLDGPDVRINVE 144 (381)
T ss_pred CCHHHHHHHhhcCCHHHhCCC----CCEEEEEEEeccCCccccHHHHHHHHHHHHHHHhhccCCCCCccccCCCeEEEEE
Confidence 688998888877 7778874 569999988888889999999999988873 13389999999999999
Q ss_pred Eecc
Q 018180 355 IVKD 358 (359)
Q Consensus 355 ViKn 358 (359)
+.++
T Consensus 145 l~~~ 148 (381)
T COG0116 145 LDKD 148 (381)
T ss_pred EEcC
Confidence 9886
No 10
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.81 E-value=0.16 Score=55.21 Aligned_cols=127 Identities=19% Similarity=0.246 Sum_probs=74.5
Q ss_pred cCHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEee-
Q 018180 205 QSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACY- 283 (359)
Q Consensus 205 ~DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~- 283 (359)
..+|+.|++||.+|+-.. +..+-.||.| .. ++..+..-.+ .+|.+.|++=+-..+.
T Consensus 10 ~GlE~~l~~El~~lg~~~------~~~~~ggV~f-~g-------~~~~~~~~nl---------~~R~A~RVll~l~~f~a 66 (702)
T PRK11783 10 KGLEELLKDELEALGASE------CKVVQGGVHF-EG-------DLELAYRSCL---------WSRLASRILLPLAEFKV 66 (702)
T ss_pred ccHHHHHHHHHHhcCCcc------cEEEcCEEEE-Ee-------CHHHHHHHHH---------HhcchhheEEEeeeeec
Confidence 357999999999998541 2223334444 32 2344332211 2344444333323333
Q ss_pred CCHHHHHHHHHHH-HHhhCCCCCCCCceEEEEEEecCCCCCC----HHHHHHHHHhcC----CCCCcccCCCCCeEEEEE
Q 018180 284 TSEEEISRAIKPL-VAQYFPLETQSPQKFAVLYEARANSGID----RMKIINAVAKSV----PAPHKVDLSNPDKTIVVE 354 (359)
Q Consensus 284 A~leeI~k~ak~L-l~k~F~~e~~~~~TFAI~~krRnns~Ls----RdeVI~~VA~lV----~~~hKVDLkNPD~tIlVE 354 (359)
.+.++|...++.+ +..||+. ..||+|++..++..-.+ ...|-++|.+.+ ...-+||+.+|++.|.|-
T Consensus 67 ~~~~~Ly~~v~~i~W~~~l~~----~~tf~V~~~~~~s~l~~~~~~~~~vKdAI~d~~~~~~~~rp~vd~~~pdv~i~~~ 142 (702)
T PRK11783 67 YSDLDLYLGVQAIDWTEHFSP----DKTFAVDFSGTNDEIRNTQFGALKVKDAIVDRFRRKGGPRPSVDKEQPDIRINAR 142 (702)
T ss_pred CCHHHHHHHHHcCCHHHhCCC----CCeEEEEEEEecCCccCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEE
Confidence 3788888888775 4446663 45999999877643222 223333333333 223479999999999999
Q ss_pred Eecc
Q 018180 355 IVKD 358 (359)
Q Consensus 355 ViKn 358 (359)
+.++
T Consensus 143 ~~~~ 146 (702)
T PRK11783 143 LNKG 146 (702)
T ss_pred EeCC
Confidence 8764
No 11
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=95.51 E-value=0.041 Score=53.92 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=54.1
Q ss_pred EeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCCC-CCcccCCCCCeEEEEEEec
Q 018180 281 ACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPA-PHKVDLSNPDKTIVVEIVK 357 (359)
Q Consensus 281 tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~~-~hKVDLkNPD~tIlVEViK 357 (359)
.|..+.++|.+.+..+--..+. ..||+|++++++++.+++..+.+.|++.+.. +.+|||+|||++|.|.+..
T Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~-----~~sf~v~~~~~~~~~~~~~~~~~~ig~~i~~~g~~v~l~~Pd~~i~v~~~~ 133 (329)
T TIGR01177 61 YDTCAAKDLYDFVAGLEASDLD-----RKSFAVRVRDLRGYSVDKARLERKIGAILKKKGFKVSLRRPDIVVRVVITE 133 (329)
T ss_pred hcCCCHHHHHHHHhhcchhhcc-----CCeEEEEEEecCCCCCCHHHHHHHHHHHHHhcCCccccCCCCeEEEEEEEC
Confidence 4445677888777764333222 2599999999887788898888889888853 3599999999999987654
No 12
>TIGR01213 conserved hypothetical protein TIGR01213. Members of this family show twilight-zone similarity to several predicted RNA pseudouridine synthases. All trusted members of this family are archaeal. Several eukaryotic homologs lack N-terminal homology including two CXXC motifs.
Probab=62.40 E-value=12 Score=38.77 Aligned_cols=73 Identities=19% Similarity=0.162 Sum_probs=44.8
Q ss_pred EEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEec-------------C----CCCCCHHHHHHHHHhcCC--CCC
Q 018180 280 LACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEAR-------------A----NSGIDRMKIINAVAKSVP--APH 340 (359)
Q Consensus 280 ~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krR-------------n----ns~LsRdeVI~~VA~lV~--~~h 340 (359)
..|.--.+.|.+.|..++...-.- +-.||.|-.+.- . ..+| +.++.++||..|. .+-
T Consensus 57 ~iC~g~f~~~~~~a~~~~~~l~~~---ef~tf~VGt~~p~~i~e~E~~i~~~~gl~~~E~i-K~E~nRevGk~~~~~~gk 132 (388)
T TIGR01213 57 DVCGGIFDRFDEAADLVAEKVGDY---DFSTFLVGTRFPPDVIELEEEIRKEFGSGGGESI-KREFNREVGKLFVKRTGK 132 (388)
T ss_pred ccccChHhHHHHHHHHHHHHhhcC---ccceEEEeeeCCHHHHHHHHHHHHHhCCCcchhH-HHHHhHHHHHHHHHHhCC
Confidence 456644455555555554432111 335888843321 1 1233 5678888888774 268
Q ss_pred cccCCCCCeEEEEEEe
Q 018180 341 KVDLSNPDKTIVVEIV 356 (359)
Q Consensus 341 KVDLkNPD~tIlVEVi 356 (359)
.||..|||++|+|++.
T Consensus 133 ~~d~~~Pdv~i~vd~~ 148 (388)
T TIGR01213 133 EVDFERPDLVIMVEFE 148 (388)
T ss_pred CccCCCCCEEEEEEcC
Confidence 9999999999999754
No 13
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=59.29 E-value=27 Score=36.38 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=47.8
Q ss_pred EeeC-CHHHHHHHHHHHHH----hhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhc--CCCCCcccCCCCCeEEEE
Q 018180 281 ACYT-SEEEISRAIKPLVA----QYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKS--VPAPHKVDLSNPDKTIVV 353 (359)
Q Consensus 281 tC~A-~leeI~k~ak~Ll~----k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~l--V~~~hKVDLkNPD~tIlV 353 (359)
.|.+ +.++|.+-++..-. ++|.. ..||+|++..=| ..++.++.+..|..+ +|-.-+|||+||+.+..|
T Consensus 70 ~~~g~s~~elh~~i~n~p~~~~~~f~~~----dssfki~fetfg-k~~t~~e~~~~I~~f~ylpfeG~Vnlk~Pq~~f~v 144 (421)
T KOG2671|consen 70 WGEGTSYDELHESIQNYPEAQILPFFKS----DSSFKIRFETFG-KKLTQDEQVEIIESFDYLPFEGPVNLKNPQHVFFV 144 (421)
T ss_pred hhcCCCHHHHHHHHHhCCcccccchhcc----CceeEEEEEEec-ccccHHHHHHHhhhheeccccceeccCCCceEEEE
Confidence 4443 46777776665422 34443 349999998755 668888888888775 566789999999987654
No 14
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=47.97 E-value=9.2 Score=32.20 Aligned_cols=18 Identities=61% Similarity=1.165 Sum_probs=14.7
Q ss_pred CCccCCCCceeEE-EeecC
Q 018180 23 GAYPLRPGIQGFF-ITCDG 40 (359)
Q Consensus 23 ~~~~~~~g~qgf~-itcdg 40 (359)
|--.|+||--|.| |||||
T Consensus 38 geV~L~PgTGG~FeI~~dg 56 (99)
T COG3526 38 GEVALIPGTGGVFEITCDG 56 (99)
T ss_pred heEEEecCCCceEEEEECC
Confidence 4457999999966 99998
No 15
>COG1258 Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=39.50 E-value=25 Score=36.62 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCC--CCCcccCCCCCeEEEEEEe
Q 018180 325 RMKIINAVAKSVP--APHKVDLSNPDKTIVVEIV 356 (359)
Q Consensus 325 RdeVI~~VA~lV~--~~hKVDLkNPD~tIlVEVi 356 (359)
+.++.+.||+.+. .+..+|..|||++|+|++.
T Consensus 121 K~E~nREvGK~~~~~~G~~~d~~~Pdi~i~vd~~ 154 (398)
T COG1258 121 KHEFNREVGKRLASKTGKEPDFDNPDIVIVVDLE 154 (398)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEecC
Confidence 4578888888664 3789999999999999873
No 16
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=37.80 E-value=47 Score=28.05 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=38.9
Q ss_pred CCceEEEEEE---ecCCCCCCHHHHHHHHHhcCC-CCCcccCCCCCeEEEEEEe
Q 018180 307 SPQKFAVLYE---ARANSGIDRMKIINAVAKSVP-APHKVDLSNPDKTIVVEIV 356 (359)
Q Consensus 307 ~~~TFAI~~k---rRnns~LsRdeVI~~VA~lV~-~~hKVDLkNPD~tIlVEVi 356 (359)
...||++... ....+.+....|..+|...+. .+++.+..+||++|-+.+.
T Consensus 16 ~ykTy~~~~~~~~~~~~~~~~~~~i~~~v~~~L~~~G~~~~~~~aDl~V~~~~~ 69 (151)
T PF13590_consen 16 QYKTYAFVPSSSDPAQSNPLDDQRIQDAVEQELAAKGYRRVPENADLLVSYHYS 69 (151)
T ss_pred CCCeEEEecCCcCccccCcHHHHHHHHHHHHHHHHCCCeecccCCCEEEEEEEE
Confidence 5779999998 455667777778888877764 3777779999999988764
No 17
>PF05109 Herpes_BLLF1: Herpes virus major outer envelope glycoprotein (BLLF1); InterPro: IPR007796 This family consists of the viral late glycoprotein BLLF1, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. The binding of the viral major glycoprotein BLLF1 to the CD21 cellular receptor is thought to play an essential role during infection of B lymphocytes by the Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) []. ; GO: 0019058 viral infectious cycle, 0019031 viral envelope; PDB: 2H6O_A.
Probab=35.68 E-value=16 Score=39.84 Aligned_cols=23 Identities=43% Similarity=0.720 Sum_probs=12.4
Q ss_pred cCCCCceeEEEeecCCchhhhHH
Q 018180 26 PLRPGIQGFFITCDGGRERQASH 48 (359)
Q Consensus 26 ~~~~g~qgf~itcdggre~~~~~ 48 (359)
|+-||-.-|||||||-+-+-||-
T Consensus 219 pvlPG~N~F~ItCsGdkphfaSg 241 (830)
T PF05109_consen 219 PVLPGDNKFNITCSGDKPHFASG 241 (830)
T ss_dssp S--SS-EEEEB--SBS--SS--E
T ss_pred cccCCCceeeEEecCCCCCCccC
Confidence 78899999999999998887763
No 18
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.81 E-value=52 Score=31.04 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=33.0
Q ss_pred CCCceeEEEeecCCchhhhHHHHHHHHHHH-------HHHHhhCCCCCccCCCCCCCCCCcce
Q 018180 28 RPGIQGFFITCDGGRERQASHEAIYVLDSF-------YEELVHGKGSGVKPAGIPNKPLNKKI 83 (359)
Q Consensus 28 ~~g~qgf~itcdggre~~~~~e~~~~~d~~-------~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (359)
.-|.+=|=.+|+.|---|.++.++|+.--+ +++| ++.|| ++.-||-
T Consensus 72 ~~l~~EFnt~~eDDS~~~ia~~L~n~f~~~~~~N~~~ieel---------ls~l~-~q~~kkt 124 (184)
T KOG4032|consen 72 ELLGDEFNTKVEDDSLPEIAQLLLNLFHDIQNGNYAIIEEL---------LSKLP-KQDLKKT 124 (184)
T ss_pred HHHHHHhhccccCCCHHHHHHHHHHHHHHHHcccHHHHHHH---------HHHcc-hhhhhhh
Confidence 345566778899999999999999987665 3444 45777 5655443
No 19
>PF10489 RFPL3_antisense: Ret finger protein-like 3 antisense; InterPro: IPR019524 This short transcript is purported to be the antisense protein of exon 2 of the ret-finger protein-like 3 (RFPL3) gene, however this was not confirmed. Since RFPL3 is expressed in testis, the suggestion is that it may have a role in the antisense regulation of the RFPL genes. RFPL transcripts encode proteins with tripartite structure of RING finger, coiled-coil, and B30-2 domains, which are characteristic of the RING-B30 family. Each of these domains is thought to mediate protein-protein interactions by promoting homo- or heterodimerisation [].
Probab=32.58 E-value=24 Score=30.80 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=18.5
Q ss_pred ccccCCCCCcccCCCCccCCCCc
Q 018180 9 RRQFLPHNRPVKKKGAYPLRPGI 31 (359)
Q Consensus 9 ~~~~~~~~~~~~~k~~~~~~~g~ 31 (359)
.|++.|||..| ||+.||..+..
T Consensus 48 ~q~~R~hgswv-kKk~ypqE~df 69 (124)
T PF10489_consen 48 NQHWRPHGSWV-KKKIYPQEDDF 69 (124)
T ss_pred cccccCCCchh-hccccCCCcch
Confidence 57889999999 58889988764
No 20
>PRK14761 ryhB-regulated fur leader peptide; Provisional
Probab=31.00 E-value=47 Score=22.05 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHhcCC
Q 018180 313 VLYEARANSGIDRMKIINAVAKSVP 337 (359)
Q Consensus 313 I~~krRnns~LsRdeVI~~VA~lV~ 337 (359)
|++-+|.|+--++.+|.+.|...||
T Consensus 2 iriisransvtssnevnrlvtgqip 26 (28)
T PRK14761 2 IRIISRANSVTSSNEVNRLVTGQIP 26 (28)
T ss_pred eeEEeecccccchhhhhhhhcccCC
Confidence 6777899999999999999999887
No 21
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=27.91 E-value=37 Score=33.95 Aligned_cols=6 Identities=33% Similarity=0.429 Sum_probs=2.6
Q ss_pred CCCccC
Q 018180 22 KGAYPL 27 (359)
Q Consensus 22 k~~~~~ 27 (359)
|=+|++
T Consensus 214 KCg~et 219 (314)
T PF06524_consen 214 KCGYET 219 (314)
T ss_pred CCCCcc
Confidence 444443
No 22
>KOG0788 consensus S-adenosylmethionine decarboxylase [Signal transduction mechanisms]
Probab=27.41 E-value=38 Score=34.50 Aligned_cols=51 Identities=27% Similarity=0.378 Sum_probs=40.6
Q ss_pred cCCCCceeEEEeecCCchhhhHHHHHHHHHHHHHHHhhCCCCCccCCCCCCCCCCcceeeccCCCCCC
Q 018180 26 PLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEELVHGKGSGVKPAGIPNKPLNKKIVFASSSDDED 93 (359)
Q Consensus 26 ~~~~g~qgf~itcdggre~~~~~e~~~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (359)
-|.||.|+| -+|.+.|-+.+||.||- .|+...+- .++|.+-|.-|+.+.++
T Consensus 116 Fl~P~~Q~~--------pH~sf~eEV~~L~~~F~---~g~ay~mG------~~~~s~~W~lys~~~~~ 166 (334)
T KOG0788|consen 116 FLFPGAQPY--------PHTSFDEEVEYLDKFFP---NGKAYCMG------LNMNSKCWHLYSASADD 166 (334)
T ss_pred ccCcccCCC--------CCcCHHHHHHHHHHhcC---CCceEEec------CCCCCCceEEEeccccc
Confidence 488999987 48999999999999998 45544433 27888999888888766
No 23
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=27.29 E-value=52 Score=32.98 Aligned_cols=10 Identities=50% Similarity=0.361 Sum_probs=5.1
Q ss_pred cCCchhhhHH
Q 018180 39 DGGRERQASH 48 (359)
Q Consensus 39 dggre~~~~~ 48 (359)
|.-=|+|||=
T Consensus 155 DDQFEHQAsC 164 (314)
T PF06524_consen 155 DDQFEHQASC 164 (314)
T ss_pred cchhhhhhhh
Confidence 4444556553
No 24
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=25.98 E-value=1.2e+02 Score=23.44 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=20.6
Q ss_pred CCCceeEEEeecCCchhhhHHHHHHHHHHH
Q 018180 28 RPGIQGFFITCDGGRERQASHEAIYVLDSF 57 (359)
Q Consensus 28 ~~g~qgf~itcdggre~~~~~e~~~~~d~~ 57 (359)
.+|..-|||-|+| ......+||.-|...
T Consensus 39 ~~~~y~Ffvd~~~--~~~~~~~~l~~L~~~ 66 (74)
T cd04904 39 NGSEYEFFVDCEV--DRGDLDQLISSLRRV 66 (74)
T ss_pred CCceEEEEEEEEc--ChHHHHHHHHHHHHh
Confidence 4678899999998 444567777777653
No 25
>PRK14554 putative pseudouridylate synthase; Provisional
Probab=24.95 E-value=52 Score=34.58 Aligned_cols=31 Identities=39% Similarity=0.609 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCC--CCcccCCCCCeEEEEEE
Q 018180 325 RMKIINAVAKSVPA--PHKVDLSNPDKTIVVEI 355 (359)
Q Consensus 325 RdeVI~~VA~lV~~--~hKVDLkNPD~tIlVEV 355 (359)
+.++.++||..|.. +-.||..|||++|+|.+
T Consensus 147 K~e~nRevGk~l~~~~gk~~d~~~Pdv~i~~d~ 179 (422)
T PRK14554 147 KSEINREVGKRLAARTGKEVDFENPDVVIVVDL 179 (422)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEEEc
Confidence 45777777777742 68999999999999865
No 26
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=20.94 E-value=94 Score=26.26 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=5.3
Q ss_pred CCCcceee
Q 018180 78 PLNKKIVF 85 (359)
Q Consensus 78 ~~~~~~~~ 85 (359)
||+|+..=
T Consensus 53 PIGK~~se 60 (92)
T PF15243_consen 53 PIGKPASE 60 (92)
T ss_pred ccCCCCCc
Confidence 77777654
No 27
>COG1491 Predicted RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=20.17 E-value=54 Score=31.27 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.3
Q ss_pred ccCCCCCcccCCCCccCCCCceeE
Q 018180 11 QFLPHNRPVKKKGAYPLRPGIQGF 34 (359)
Q Consensus 11 ~~~~~~~~~~~k~~~~~~~g~qgf 34 (359)
-|||||.|..+.++|-=.|=+|+.
T Consensus 23 Dylp~G~p~d~~r~~~~~pv~qav 46 (202)
T COG1491 23 DYLPYGYPDDPHRSYRDKPVAQAV 46 (202)
T ss_pred eeccCCCCCCcchhhccCchhhee
Confidence 389999999888899888888874
Done!