Query 018180
Match_columns 359
No_of_seqs 139 out of 358
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:11:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dir_A Thump domain-containing 99.6 5.6E-16 1.9E-20 125.7 5.9 78 279-358 4-84 (98)
2 2c5s_A THII, probable thiamine 99.1 2.6E-09 8.9E-14 105.8 16.7 132 206-358 32-167 (413)
3 1vbk_A Hypothetical protein PH 99.1 6.9E-10 2.3E-14 106.4 11.4 131 206-358 21-159 (307)
4 3k0b_A Predicted N6-adenine-sp 97.9 5.4E-05 1.8E-09 74.5 11.1 126 205-358 23-158 (393)
5 3tma_A Methyltransferase; thum 97.9 1.4E-05 4.8E-10 75.9 5.8 126 206-358 29-161 (354)
6 3tm4_A TRNA (guanine N2-)-meth 97.6 0.00028 9.4E-09 68.2 10.3 140 206-358 10-174 (373)
7 3ldg_A Putative uncharacterize 97.5 0.0004 1.4E-08 68.2 11.0 125 206-358 14-151 (384)
8 3ldu_A Putative methylase; str 97.5 0.00033 1.1E-08 68.5 10.3 126 206-358 16-152 (385)
9 3v97_A Ribosomal RNA large sub 97.3 0.0023 7.7E-08 67.5 13.5 126 206-358 12-147 (703)
10 3g8q_A Predicted RNA-binding p 70.8 61 0.0021 30.9 12.5 112 227-357 155-268 (278)
11 2h6o_A Major outer envelope gl 47.8 4.8 0.00016 39.9 0.6 23 26-48 220-242 (470)
12 4f87_A Plycb; lysin, bacteriop 40.9 11 0.00038 28.6 1.6 17 29-46 12-28 (72)
No 1
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Probab=99.60 E-value=5.6e-16 Score=125.72 Aligned_cols=78 Identities=29% Similarity=0.491 Sum_probs=70.6
Q ss_pred eEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCC---CCCcccCCCCCeEEEEEE
Q 018180 279 ELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVP---APHKVDLSNPDKTIVVEI 355 (359)
Q Consensus 279 q~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~---~~hKVDLkNPD~tIlVEV 355 (359)
..+|.+++++|.++|..++.++|+.. .+.||+|+++||+++.|+|++|++.||+.|. ++++|||+|||++|.|||
T Consensus 4 ~~~~~~~~e~I~~~a~~~~~~~f~~~--~~~TF~V~~kR~~k~~~~S~ei~~~vG~~i~~~~~~~kVdL~nPd~~I~VEI 81 (98)
T 2dir_A 4 GSSGKAFLEDMKKYAETFLEPWFKAP--NKGTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEI 81 (98)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHSTT--CCCEEEEEEECSSCCSSCHHHHHHHHHHHHHHHCTTCEECSSSCSEEEEEEE
T ss_pred eEEEECCHHHHHHHHHHHHHHhcCcC--CCceEEEEEEeCCCCCCCHHHHHHHHHHHHHhhCCCCeeEcCCCCEEEEEEE
Confidence 37899999999999999999998532 3579999999999999999999999999995 379999999999999999
Q ss_pred ecc
Q 018180 356 VKD 358 (359)
Q Consensus 356 iKn 358 (359)
+++
T Consensus 82 ~~~ 84 (98)
T 2dir_A 82 IKA 84 (98)
T ss_dssp ETT
T ss_pred eCC
Confidence 986
No 2
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.08 E-value=2.6e-09 Score=105.83 Aligned_cols=132 Identities=13% Similarity=0.102 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeCC
Q 018180 206 SIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTS 285 (359)
Q Consensus 206 DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A~ 285 (359)
..+.+|..-|...-..- ..+... ...|.+||.+.. .++.+++.++ .++..|.++.|+.. |..+
T Consensus 32 ~f~~~L~~ni~~~l~~~-~~~~v~--~~~gri~v~~~~----~~~~~~~~~L---------~~vfGI~~~~~v~~-~~~d 94 (413)
T 2c5s_A 32 KFVSTLKDNVKFKLKKF-PNIKID--ATHDRMYIQLNG----EDHEAVSERL---------KDVFGIHKFNLAMK-VPSE 94 (413)
T ss_dssp HHHHHHHHHHHHHTTTS-TTCEEE--ECSSCEEEECTT----CCHHHHHHHH---------TTCTTEEEEEEEEE-EESS
T ss_pred HHHHHHHHHHHHHHhhc-CceEEE--EECCEEEEEeCC----CCHHHHHHHH---------hhCCCeEEEEEEEE-ecCC
Confidence 46777777766543321 123322 224788887642 3566665555 36889999999955 6799
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCC-CCCHHHHHHHHHhcCCC---CCcccCCCCCeEEEEEEecc
Q 018180 286 EEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANS-GIDRMKIINAVAKSVPA---PHKVDLSNPDKTIVVEIVKD 358 (359)
Q Consensus 286 leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns-~LsRdeVI~~VA~lV~~---~hKVDLkNPD~tIlVEViKn 358 (359)
+++|.++|..++..++. .+.||+|+.+|++.+ .++|++|.+.||+.|.. +.+|||+|||++|.|||.++
T Consensus 95 le~I~~~~~~~~~~~~~----~~~tF~V~~kR~~k~f~~~S~ei~r~vG~~i~~~~~~~~Vdl~~Pdi~i~vEI~~~ 167 (413)
T 2c5s_A 95 LEDIKKGALAAFLQVKG----DVKTFKITVHRSYKHFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSG 167 (413)
T ss_dssp HHHHHHHHHHHHHTCCS----CCCEEEEEEEECCTTCSSCHHHHHHHHHHHHHTTSSSCEECSSSCSEEEEEEECSS
T ss_pred HHHHHHHHHHHHHhhcc----CCCcEEEEEEECCCCCCCChHHHHHHHHHHHHHhCCCCeeccCCCCeEEEEEEEec
Confidence 99999999999987653 356999999999987 99999999999999853 57999999999999999875
No 3
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=99.06 E-value=6.9e-10 Score=106.35 Aligned_cols=131 Identities=21% Similarity=0.201 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHhccccCCceEE-ccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeC
Q 018180 206 SIDKLIEAELKELGDKNKRRFIN-LDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYT 284 (359)
Q Consensus 206 DIE~~I~kELaeLK~kKkrrF~~-v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A 284 (359)
..|++|...|...-.. ..+.. --....|-+||.. .++.++++++ .++..|.++.|+.. |..
T Consensus 21 ~Fe~~L~~nI~~~L~~--~~~~~~~v~~~~gri~V~~------~~~~~~~~~L---------~~vfGI~~~s~v~~-~~~ 82 (307)
T 1vbk_A 21 WFEKILMNNIREALVT--EEVPYKEIFSRHGRIIVKT------NSPKEAANVL---------VRVFGIVSISPAME-VEA 82 (307)
T ss_dssp HHHHHHHHHHHHHHHH--TTCCCSEEEEETTEEEEEC------SCHHHHHHHH---------TTSTTEEEEEEEEE-EEC
T ss_pred HHHHHHHHHHHHHhcc--cCccceeEEEECCEEEEEc------CCHHHHHHHH---------hhcCCeEEEEEEEE-eCC
Confidence 3777887777654332 12220 0113457788862 2577766665 36789999999965 679
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCC-Cc---eEEEEEEecC-CCCCCHHHHHHHHHhcCCC--CCcccCCCCCeEEEEEEec
Q 018180 285 SEEEISRAIKPLVAQYFPLETQS-PQ---KFAVLYEARA-NSGIDRMKIINAVAKSVPA--PHKVDLSNPDKTIVVEIVK 357 (359)
Q Consensus 285 ~leeI~k~ak~Ll~k~F~~e~~~-~~---TFAI~~krRn-ns~LsRdeVI~~VA~lV~~--~hKVDLkNPD~tIlVEViK 357 (359)
++++|.+.+..++..++. + +. ||+|+.+|++ ++.++|++|.+.||+.|.. +.+|||+|||++|.|||.+
T Consensus 83 dle~I~~~~~~~~~~~~~----~~~~~~~tF~Vr~kR~~k~~~~~S~ei~r~vG~~i~~~~~~~Vdl~~PD~~i~VEi~~ 158 (307)
T 1vbk_A 83 SLEKINRTALLMFRKKAK----EVGKERPKFRVTARRITKEFPLDSLEIQAKVGEYILNNENCEVDLKNYDIEIGIEIMQ 158 (307)
T ss_dssp CHHHHHHHHHHHHHHHHH----HHTCSSCEEEEEEEESSSCSSSCHHHHHHHHHHHHHHHSSCEECSSSCSEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHhhc----ccCCCCceEEEEEEeCCCCCCCChHHHHHHHHHHHHHHhCCceeeeCCCEEEEEEEEc
Confidence 999999999999887531 1 23 9999999999 7799999999999999853 5899999999999999987
Q ss_pred c
Q 018180 358 D 358 (359)
Q Consensus 358 n 358 (359)
+
T Consensus 159 ~ 159 (307)
T 1vbk_A 159 G 159 (307)
T ss_dssp T
T ss_pred C
Confidence 5
No 4
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=97.91 E-value=5.4e-05 Score=74.49 Aligned_cols=126 Identities=17% Similarity=0.145 Sum_probs=90.8
Q ss_pred cCHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeC
Q 018180 205 QSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYT 284 (359)
Q Consensus 205 ~DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A 284 (359)
..+|..|++||.+|+- ... ..-.+|.| .. +...+....+ .+|-..|++-+-..+.+
T Consensus 23 ~GlE~~la~El~~lG~----~v~---~~~g~V~f-~g-------~~~~~~r~~l---------~~R~a~RVl~~l~~f~a 78 (393)
T 3k0b_A 23 SGLEAIVGKEVARLGY----DPK---VENGKVYF-EG-------DLSAIARANL---------WLRVADRVKIVVGVFKA 78 (393)
T ss_dssp TTCHHHHHHHHHHTTC----CCE---EETTEEEE-EE-------CHHHHHHHHH---------HCSSCSCEEEEEEEEEC
T ss_pred ccHHHHHHHHHHhCCC----CcE---EeccEEEE-EE-------CHHHHHHHHh---------cccceeeEEEEEEEEec
Confidence 3578999999999974 122 22244444 43 2233333222 36777777766667765
Q ss_pred -CHHHHHHHHHHH-HHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCC--------CCCcccCCCCCeEEEEE
Q 018180 285 -SEEEISRAIKPL-VAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVP--------APHKVDLSNPDKTIVVE 354 (359)
Q Consensus 285 -~leeI~k~ak~L-l~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~--------~~hKVDLkNPD~tIlVE 354 (359)
+.++|.+.+..+ +..||+. ..||+|+.++++++.+++.++...|..+|- ..-.||+++||+.|.|.
T Consensus 79 ~~~~~L~~~~~~i~w~~~l~~----~~tF~V~~~~~~s~~fss~~~~~~vkdAI~d~~~~~~~~rp~vd~~~Pd~~i~v~ 154 (393)
T 3k0b_A 79 TTFDELFEKTKALPWEDYLPL----DAQFPVAGKSVKSTLYSVPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVS 154 (393)
T ss_dssp SSHHHHHHHHHTSCGGGTCCT----TCBCCEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHTTTCTTCCSCSSBCCEEEE
T ss_pred CCHHHHHHHHHhCCHHHhCCC----CCeEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEE
Confidence 799999999998 6788863 569999999999999999888888877762 12379999999999999
Q ss_pred Eecc
Q 018180 355 IVKD 358 (359)
Q Consensus 355 ViKn 358 (359)
+.++
T Consensus 155 l~~~ 158 (393)
T 3k0b_A 155 ILKD 158 (393)
T ss_dssp EETT
T ss_pred EECC
Confidence 8765
No 5
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=97.86 E-value=1.4e-05 Score=75.95 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHH-hccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEe--
Q 018180 206 SIDKLIEAELKE-LGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELAC-- 282 (359)
Q Consensus 206 DIE~~I~kELae-LK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC-- 282 (359)
.+|..|++||.+ |+.. ... .....|-|++.+.. ++..+ .++|.+.|++-+-..+
T Consensus 29 GlE~~l~~El~~~lg~~---~~~--~~~~~g~v~~~~~~-----~~~~~-------------~~lR~a~rvl~~~~~~~~ 85 (354)
T 3tma_A 29 GLEDLLLEELSALYPGE---GAE--VDARKGRVRIPRAW-----VGEEA-------------LGLRLAHHLVLFRARLLL 85 (354)
T ss_dssp TCHHHHHHHHHHHSCSS---CCE--EETTTTEEEEECSC-----CCGGG-------------GGCSSCSCEEEEEEEEEC
T ss_pred cHHHHHHHHHHHHcCCc---cce--eeecCCEEEEEecC-----CHHHH-------------HhcCCccEEEEEeeeccC
Confidence 679999999999 8754 111 12234566666532 22221 2478888887776666
Q ss_pred e-CC-HHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCCC--CCcccCCCCCeEEEEEEecc
Q 018180 283 Y-TS-EEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPA--PHKVDLSNPDKTIVVEIVKD 358 (359)
Q Consensus 283 ~-A~-leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~~--~hKVDLkNPD~tIlVEViKn 358 (359)
. .+ +++|.+.+..+--..++ ...||+|++++.+++.+++.+|.+.|+..+.. +.+|||++||+.|.|.+.++
T Consensus 86 ~~~~~~~~L~~~~~~~~w~~~~----~~~tF~V~~~~~~~~~f~s~~vk~~i~~~l~~~~g~~v~~~~pd~~i~v~i~~d 161 (354)
T 3tma_A 86 SREDPLGALERAALALPWPELE----GAGSFRVEARREGEHPFTSPEVERRVGEALHRAYGVPVDLKRPAVRVRVDVRGE 161 (354)
T ss_dssp CSSSHHHHHHHHHHTSCCTTHH----HHCCEEEEEEEESCCSSCHHHHHHHHHHHHHHHHCCCBCSSSCSEEEEEEEETT
T ss_pred CchhhHHHHHHHHHhCchhhcC----CCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCcccCCCCCEEEEEEEECC
Confidence 4 36 88998888765211111 24699999999998899999999999998753 56799999999999998764
No 6
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=97.59 E-value=0.00028 Score=68.21 Aligned_cols=140 Identities=21% Similarity=0.239 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHhccccCC--ceEEccCCCCeEEEEEeccC---C--CCC-CHHHHHHHHHHHHhhcCCCcccceEEeee
Q 018180 206 SIDKLIEAELKELGDKNKR--RFINLDSGCNGVAVVQMRKI---D--GDP-SPKDIVQHMMTSVASTRKPISRSILRVLP 277 (359)
Q Consensus 206 DIE~~I~kELaeLK~kKkr--rF~~v~TG~kGvVFIrtr~~---d--~di-DPveLV~~I~ed~~~tk~~~TRfI~RLiP 277 (359)
.+|+.|++||.+|.....- ....+..+.+|-|++..... + .-. +-..+ .+++ ..+|...|++-
T Consensus 10 GlE~~l~~El~~lg~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~R~a~rv~~ 80 (373)
T 3tm4_A 10 GIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSIS-TYLN--------ENSRLLHRVII 80 (373)
T ss_dssp TCHHHHHHHHHHHHHTTTCCEEEEESGGGCTTEEEEEECCEEEECTTSCEEEECHH-HHHH--------HHCSSCSEEEE
T ss_pred chHHHHHHHHHHhhccccccccceeccccccceEEEEEecccccccccccCCHHHH-HHHH--------HhhhhHhheEE
Confidence 5789999999999863111 22334554566666655100 0 000 11122 2221 14788999988
Q ss_pred eeEEeeC----------CHHHHHHHHHHH-HHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCCC-----C-C
Q 018180 278 IELACYT----------SEEEISRAIKPL-VAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPA-----P-H 340 (359)
Q Consensus 278 Iq~tC~A----------~leeI~k~ak~L-l~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~~-----~-h 340 (359)
+-..+.+ +.++|.+.+..+ +..||+. ..||+|++++.+++.+++.++...|+..|-. + .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~~v~~~~w~~~l~~----~~tF~V~~~~~~~~~~~s~~~~~~vk~aIvd~~~~~g~~ 156 (373)
T 3tm4_A 81 EIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKV----SETFAVRSFRKGDHNITSIDIARTVGEAIFERLSRFGTP 156 (373)
T ss_dssp EEEEEECTTTTTSCHHHHHHHHHHHHHTSCGGGGSCT----TSEEEEEEEEESSCSSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred EEEEeEeccccccccCCCHHHHHHHHHhCCHHHhCCC----CCcEEEEEEECCCCcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 8777765 477888887775 4567763 5699999999988889998888888776631 1 5
Q ss_pred cccCCCCCeEEEEEEecc
Q 018180 341 KVDLSNPDKTIVVEIVKD 358 (359)
Q Consensus 341 KVDLkNPD~tIlVEViKn 358 (359)
.|||.+||+.|.|.+.++
T Consensus 157 ~v~~~~p~~~i~~~~~~d 174 (373)
T 3tm4_A 157 LVNLDHPAVIFRAELIKD 174 (373)
T ss_dssp EECSSSCSEEEEEEEETT
T ss_pred cccCCCCCeEEEEEEECC
Confidence 899999999999988764
No 7
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=97.55 E-value=0.0004 Score=68.24 Aligned_cols=125 Identities=20% Similarity=0.244 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeC-
Q 018180 206 SIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYT- 284 (359)
Q Consensus 206 DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A- 284 (359)
.+|+.|++||.+|+- ..+ ..-.+|.| .. +...+....+ -+|-..|++-+-..+.+
T Consensus 14 GlE~~la~El~~lG~----~~~---~~~g~V~f-~g-------d~~~~~~~~l---------~~R~a~RVl~~l~~f~a~ 69 (384)
T 3ldg_A 14 GIEAVVGKELRNLGL----DCQ---VENGRVLF-KG-------NIETIAKSNL---------WLRSADRIKIVVGEFPAR 69 (384)
T ss_dssp TCHHHHHHHHHHTTC----CCE---EETTEEEE-EE-------CHHHHHHHHH---------HCSSCSEEEEEEEEEECS
T ss_pred hHHHHHHHHHHhCCC----CcE---EeeeEEEE-EE-------CHHHHHHHHh---------hcccceeEEEEEEEEecC
Confidence 578999999999975 122 22234444 43 2233332222 46778888877777776
Q ss_pred CHHHHHHHHHHH-HHhhCCCCCCCCceEEE-EEEecCCCCCCHHHHHHHHHhcCC--------CCCc--ccCCCCCeEEE
Q 018180 285 SEEEISRAIKPL-VAQYFPLETQSPQKFAV-LYEARANSGIDRMKIINAVAKSVP--------APHK--VDLSNPDKTIV 352 (359)
Q Consensus 285 ~leeI~k~ak~L-l~k~F~~e~~~~~TFAI-~~krRnns~LsRdeVI~~VA~lV~--------~~hK--VDLkNPD~tIl 352 (359)
+.++|-+.++.+ +..||+. ..||+| +.++.+++.+++.++...|..+|- ..-. ||+++||+.|.
T Consensus 70 ~~~~Ly~~~~~i~W~~~l~~----~~tf~V~~~~~~~s~~~~s~~~~~~vkdAi~d~~~~~~~~r~~~~v~~~~pd~~i~ 145 (384)
T 3ldg_A 70 TFEELFQGVYALDWENYLPL----GCQFPVAKAKSVKSKLHNEPSIQGITKKAIVKKLQHYFHRPDSVPLPENGPEFKIE 145 (384)
T ss_dssp SHHHHHHHHHHSCGGGTCCT----TCBCCBCCCEEESCSCCCHHHHHHHHHHHHHHHHHHHTTCCTTSCCCCCSCBCEEE
T ss_pred CHHHHHHHHHcCCHHHhCCC----CCeEEEEeeeecCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCccccCCCCCCEEEE
Confidence 799999999998 6788874 569999 888888888998888777766652 1122 99999999999
Q ss_pred EEEecc
Q 018180 353 VEIVKD 358 (359)
Q Consensus 353 VEViKn 358 (359)
|.+.++
T Consensus 146 v~~~~~ 151 (384)
T 3ldg_A 146 ISLLKD 151 (384)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 998775
No 8
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=97.54 E-value=0.00033 Score=68.52 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeC-
Q 018180 206 SIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYT- 284 (359)
Q Consensus 206 DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A- 284 (359)
.+|..|++||.+|+-. .+...-.+|.| ... ...+....+ -+|-..|++=+-..+.+
T Consensus 16 GlE~~l~~El~~Lg~~------~~~~~~g~V~f-~g~-------~~~~~~~~l---------~~R~a~RVl~~l~~f~~~ 72 (385)
T 3ldu_A 16 GMEKMLAREITNLGYE------IIKTEDGRITY-KTD-------EFGIAKSNM---------WLRCAERVHLKIAEFEAK 72 (385)
T ss_dssp TCHHHHHHHHHHTTCE------EEEEETTEEEE-EEC-------TTHHHHHHH---------HCSSCSCCEEEEEEEECS
T ss_pred hHHHHHHHHHHhcCCC------ceEEeccEEEE-EEC-------HHHHHHHHh---------ccCceeEEEEEeeeEecC
Confidence 5789999999999853 23333345555 331 122222222 35666666655566665
Q ss_pred CHHHHHHHHHHH-HHhhCCCCCCCCceEEEE-EEecCCCCCCHHHHHHHHHhcCC--------CCCcccCCCCCeEEEEE
Q 018180 285 SEEEISRAIKPL-VAQYFPLETQSPQKFAVL-YEARANSGIDRMKIINAVAKSVP--------APHKVDLSNPDKTIVVE 354 (359)
Q Consensus 285 ~leeI~k~ak~L-l~k~F~~e~~~~~TFAI~-~krRnns~LsRdeVI~~VA~lV~--------~~hKVDLkNPD~tIlVE 354 (359)
+.++|-+.+..+ +..||+. ..||+|+ .++++++.+++.++...|..+|- ..-.||+.+||+.|.|.
T Consensus 73 ~~~~L~~~~~~i~w~~~~~~----~~tf~V~~~~~~~s~~~~~~~~~~~vkdAIvd~~~~~~~~rp~v~~~~p~~~i~~~ 148 (385)
T 3ldu_A 73 SFDELFENTKRINWSRYIPY----GAQFPISKASSIKSKLYSTPDVQAIVKKAIVESLKKSYLEDGLLKEDKEKYPIFVF 148 (385)
T ss_dssp SHHHHHHHHHTSCGGGTSCT----TCBCCEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHTTCCSCCCCCSCBCCEEEE
T ss_pred CHHHHHHHHHhCCHHHhCCC----CceEEEEeecccCCCcCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEE
Confidence 799999999987 6788874 5699999 88889888999888877776652 12479999999999999
Q ss_pred Eecc
Q 018180 355 IVKD 358 (359)
Q Consensus 355 ViKn 358 (359)
|.++
T Consensus 149 i~~~ 152 (385)
T 3ldu_A 149 IHKD 152 (385)
T ss_dssp EETT
T ss_pred EECC
Confidence 8765
No 9
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.28 E-value=0.0023 Score=67.49 Aligned_cols=126 Identities=20% Similarity=0.258 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeC-
Q 018180 206 SIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYT- 284 (359)
Q Consensus 206 DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A- 284 (359)
.+|..|++||.+|+-. .+...-.+|.| .. +...+.+..+ -+|-..|++=+-..+.+
T Consensus 12 GlE~~l~~El~~lg~~------~~~~~~g~V~f-~g-------~~~~~~~~~l---------~~R~a~Rvl~~l~~f~~~ 68 (703)
T 3v97_A 12 GLEELLKTELENLGAV------ECQVVQGGVHF-KG-------DTRLVYQSLM---------WSRLASRIMLPLGECKVY 68 (703)
T ss_dssp TCHHHHHHHHHHTTCE------EEEEETTEEEE-EE-------CHHHHHHHHH---------HCSSCSEEEEEEEEEECS
T ss_pred cHHHHHHHHHHhcCCc------ccEEECCEEEE-Ee-------CHHHHHHHHH---------hhCceeEEEEEEEEEecC
Confidence 4689999999999853 23344456655 32 2334333222 46777787776677775
Q ss_pred CHHHHHHHHHHH-HHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcC--------CCCCcccCCCCCeEEEEEE
Q 018180 285 SEEEISRAIKPL-VAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSV--------PAPHKVDLSNPDKTIVVEI 355 (359)
Q Consensus 285 ~leeI~k~ak~L-l~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV--------~~~hKVDLkNPD~tIlVEV 355 (359)
+.++|-+.++.+ +..||+. ..||+|.+++++.+-.++..+...|..+| +....||+++||+.|.|-+
T Consensus 69 ~~~~L~~~~~~~~w~~~~~~----~~tf~V~~~~~~~~~~~~~~~~~~vk~ai~d~~~~~~g~rp~v~~~~pd~~i~v~l 144 (703)
T 3v97_A 69 SDLDLYLGVQAINWTEMFNP----GATFAVHFSGLNDTIRNSQYGAMKVKDAIVDAFTRKNLPRPNVDRDAPDIRVNVWL 144 (703)
T ss_dssp SHHHHHHHHHTSCHHHHBCT----TCCEEEEEECCCSSCCSHHHHHHHHHHHHHHHHHTTTCCCCCBCSSSCSEEEEEEE
T ss_pred CHHHHHHHHHcCCHHHhCCC----CceEEEEEEEecCCcCChHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEEE
Confidence 799999999998 7888874 56999999887755444554443333333 2234699999999999998
Q ss_pred ecc
Q 018180 356 VKD 358 (359)
Q Consensus 356 iKn 358 (359)
.++
T Consensus 145 ~~~ 147 (703)
T 3v97_A 145 HKE 147 (703)
T ss_dssp ETT
T ss_pred ECC
Confidence 765
No 10
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=70.81 E-value=61 Score=30.91 Aligned_cols=112 Identities=12% Similarity=0.204 Sum_probs=72.6
Q ss_pred EEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCC
Q 018180 227 INLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQ 306 (359)
Q Consensus 227 ~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~ 306 (359)
.+.+-+..|-+=|-+.. -||.+.|+-+-+++- +.||--.-.+...+-+++.+.+.+=+.+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 218 (278)
T 3g8q_A 155 APAPENLSGRVEIMVTR----GDPDEAVELLKEELP---------VFRIRRFLISGEFDRDELRERILEDIEPRILD--- 218 (278)
T ss_dssp EESGGGCTTEEEEEEEE----SCHHHHHHHHHHHST---------TSEEEECSEEEECCHHHHHHHHHHHTGGGCCS---
T ss_pred CCCccccCceEEEEEec----CCcHHHHHHHHhhcc---------hheeeeeeecccccHHHHHHHHHhhcCccccC---
Confidence 44555555555554433 478888877765542 22333333466678899988887777776643
Q ss_pred CCceEEEEEEecCCCCCC-HHHHHHHHHhcCCC-CCcccCCCCCeEEEEEEec
Q 018180 307 SPQKFAVLYEARANSGID-RMKIINAVAKSVPA-PHKVDLSNPDKTIVVEIVK 357 (359)
Q Consensus 307 ~~~TFAI~~krRnns~Ls-RdeVI~~VA~lV~~-~hKVDLkNPD~tIlVEViK 357 (359)
.|||+.+.-..-.|+ +.+.--.|+..+.. +..|||..|--++-|.|+.
T Consensus 219 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (278)
T 3g8q_A 219 ---PFAVRARIARAGAFSSSREAEVFIGDVLTSVGREVNLNDPRTVVTVDVLG 268 (278)
T ss_dssp ---SEEEEEEEEECSSCSSHHHHHHHHHHHHHTTTCCBCSSSCSEEEEEEEET
T ss_pred ---hHHHHHHHHhccccccccceeeehhhhhhhccceeccCCCceEEEEeecc
Confidence 599998875444443 44544455554432 5899999999999999875
No 11
>2h6o_A Major outer envelope glycoprotein GP350; viral protein; HET: NAG MAN BMA NDG GAL FUC; 3.50A {Human herpesvirus 4}
Probab=47.75 E-value=4.8 Score=39.93 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.5
Q ss_pred cCCCCceeEEEeecCCchhhhHH
Q 018180 26 PLRPGIQGFFITCDGGRERQASH 48 (359)
Q Consensus 26 ~~~~g~qgf~itcdggre~~~~~ 48 (359)
|+-||-.-|||||+|-+-+-||-
T Consensus 220 pvlPG~N~F~ItCsGdkphfaSg 242 (470)
T 2h6o_A 220 QVLPGDNKFNITCSGYESHVPSG 242 (470)
T ss_dssp SCCSSCEEEEBCCSBSCCSSCCE
T ss_pred cccCCCceeEEEecCCCCCCccc
Confidence 88999999999999999887763
No 12
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=40.90 E-value=11 Score=28.55 Aligned_cols=17 Identities=41% Similarity=0.878 Sum_probs=12.8
Q ss_pred CCceeEEEeecCCchhhh
Q 018180 29 PGIQGFFITCDGGRERQA 46 (359)
Q Consensus 29 ~g~qgf~itcdggre~~~ 46 (359)
.|||||++..|| +|.+.
T Consensus 12 sgvqgflfhtdg-kesyg 28 (72)
T 4f87_A 12 SGVQGFLFHTDG-KESYG 28 (72)
T ss_dssp CSCCEEEEECCS-SSCCC
T ss_pred ccceEEEEecCC-ccccc
Confidence 599999999886 44443
Done!