Citrus Sinensis ID: 018181

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREKLKNVESEEERVDERSVDDLLQFINGGERDSKGTKSSKNKKKNQRKKDQLKDTCPIESIKTDKQESNGLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKVDFDDVDIDDEIDPALKEKLDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYANPERK
cccccccccccccccccEEEEcccccEEEEcHHHHHHcHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccEEccccccccccccccccc
ccHcHHHHHcHHHcccEEEEEEccccEEEEcHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHccccccccccEccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccEEEEEccccccccccccccc
MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKgmgssknyaislpqrvNPAMLSLILDYCrfhqvpgssnkerksFDEKFIRMDTKRLCELtsaadslqlkplvDLTSRALARIIEGKTPEEIREIfhlpddlteeekleplknttddprIRLLNRLYAKKRKELKEREklknveseeervdersvDDLLQFinggerdskgtkssknkkknqrkkdqlkdtcpiesiktdkqesnglnfvcHSAEvgnkfstdlgetsnmqnmedgifvrkvdfddvdiddeiDPALKEKLDREVEDFARRLNSDWPERMQEILSlghdmkplrhstkgngtirryanperk
MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFhqvpgssnkerksfdEKFIRMDTKRLCELTsaadslqlkplvdLTSRALARiiegktpeeireifhlpddlteeekleplknttddprirlLNRLYAkkrkelkereklknveseeervdersvddllqfinggerdskgtkssknkkknqrkkdqlkdtcpiesiktdkqesngLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKVDFDDVDIDDEIDpalkekldrEVEDFArrlnsdwpERMQEIlslghdmkplrhstkgngtirryanperk
MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAkkrkelkereklkNveseeervdersvddLLQFINGGERDSKGTkssknkkknqrkkdqlkdTCPIESIKTDKQESNGLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKvdfddvdiddeidPALKEKLDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYANPERK
*******VIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQV*************KFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHL************************************************************************************************************LNFVCHSAEVG*****************DGIFVRKVDFDDVDIDDEI***********************************************************
*******************LQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEP*****DDPRIRL******************************RSVDDLLQ*****************************************************************************FVRKVDFDDVDIDDEIDPALKEKLDREVEDFARRLNSDWPERMQEI*****************************
MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERE***************SVDDLLQFINGGE**********************KDTCPIESIKTDKQESNGLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKVDFDDVDIDDEIDPALKEKLDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYANPERK
*************MKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREKLKNVESEEERVDERSVDDLLQFINGG**********************************************************************GIFVRKVDFDDVDIDDEIDPALKEKLDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGN*T**********
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MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLxxxxxxxxxxxxxxxxxxxxxESEEERVDERSVDDLLQFINGGERDSKGTKSSKNKKKNQRKKDQLKDTCPIESIKTDKQESNGLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKVDFDDVDIDDEIDPALKEKLDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYANPERK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q8LF97351 SKP1-like protein 21 OS=A yes no 0.963 0.985 0.719 1e-137
A8MQG7352 SKP1-like protein 20 OS=A no no 0.941 0.960 0.703 1e-121
Q557E4162 SCF ubiquitin ligase comp yes no 0.364 0.808 0.366 3e-16
P52285162 SCF ubiquitin ligase comp yes no 0.364 0.808 0.366 3e-16
Q9LSX9153 SKP1-like protein 9 OS=Ar no no 0.384 0.901 0.344 3e-16
Q8NK13171 E3 ubiquitin ligase compl N/A no 0.373 0.783 0.349 9e-15
Q71U00163 S-phase kinase-associated N/A no 0.370 0.815 0.351 9e-15
Q5R512163 S-phase kinase-associated yes no 0.370 0.815 0.351 9e-15
Q4R5B9163 S-phase kinase-associated N/A no 0.370 0.815 0.351 9e-15
P63208163 S-phase kinase-associated yes no 0.370 0.815 0.351 9e-15
>sp|Q8LF97|ASK21_ARATH SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1 Back     alignment and function desciption
 Score =  486 bits (1252), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 256/356 (71%), Positives = 287/356 (80%), Gaps = 10/356 (2%)

Query: 1   MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISL 60
           MSE +MA+IKPEMMKSYIWL+TADGSIQQVEQEVAMFCP+ICQEVIQKG+GSSKNYAISL
Sbjct: 1   MSEGEMAIIKPEMMKSYIWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISL 60

Query: 61  PQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLV 120
           PQRVNPAMLSLI DYCRFHQVPG SNKERK +DEKFIRMDTKRLCELTSAADSLQLKPLV
Sbjct: 61  PQRVNPAMLSLIFDYCRFHQVPGRSNKERKVYDEKFIRMDTKRLCELTSAADSLQLKPLV 120

Query: 121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKE 180
           DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNT DDPRIRLLNRLYAKKRKE
Sbjct: 121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTMDDPRIRLLNRLYAKKRKE 180

Query: 181 LKEREKLKNVESEEERVDERSVDDLLQFINGGERDSKGTKSSKNKKKNQRKKDQLKDTCP 240
           LKEREKLK+VE  EE VDERSVDDLL FING +     T  SK K K ++++        
Sbjct: 181 LKEREKLKSVEV-EEHVDERSVDDLLSFINGRDPKVVKTSKSKKKNKKRKEQKNGSSNGT 239

Query: 241 IESIKTDKQESNGLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKVDFDDVDIDDEI 300
            E+++ D    + L+    SAE+ +  ++ LG+ SN+ +MED IF  K +F+D  IDDEI
Sbjct: 240 CEALEKDL---HNLDSKSQSAEIVDNTASCLGDVSNLPSMEDDIFTPKTEFEDGYIDDEI 296

Query: 301 DPALKEKLDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYANP 356
           DPALKE LDREVEDFARRLNS W      +LS+G + +P+  S  GNGT RR   P
Sbjct: 297 DPALKELLDREVEDFARRLNSSW------VLSIGQERQPVNFSINGNGTSRRLTGP 346
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.
Arabidopsis thaliana (taxid: 3702)
>sp|A8MQG7|ASK20_ARATH SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1 Back     alignment and function description
>sp|Q557E4|SKP1B_DICDI SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1 Back     alignment and function description
>sp|P52285|SKP1A_DICDI SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1 Back     alignment and function description
>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1 Back     alignment and function description
>sp|Q8NK13|SKP1_NEUCR E3 ubiquitin ligase complex SCF subunit scon-3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=scon-3 PE=1 SV=1 Back     alignment and function description
>sp|Q71U00|SKP1_XENLA S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3 Back     alignment and function description
>sp|Q5R512|SKP1_PONAB S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1 Back     alignment and function description
>sp|Q4R5B9|SKP1_MACFA S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1 Back     alignment and function description
>sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
225454254388 PREDICTED: SKP1-like protein 21-like [Vi 0.969 0.896 0.75 1e-143
297745305351 unnamed protein product [Vitis vinifera] 0.969 0.991 0.753 1e-143
224067902345 predicted protein [Populus trichocarpa] 0.938 0.976 0.743 1e-143
255541614359 ubiquitin-protein ligase, putative [Rici 0.913 0.913 0.829 1e-142
356531993347 PREDICTED: SKP1-like protein 21-like [Gl 0.963 0.997 0.752 1e-135
297820994346 hypothetical protein ARALYDRAFT_486615 [ 0.949 0.985 0.737 1e-135
18411999351 SKP1-like protein 21 [Arabidopsis thalia 0.963 0.985 0.719 1e-135
186511286349 SKP1-like protein 21 [Arabidopsis thalia 0.952 0.979 0.724 1e-134
302143834358 unnamed protein product [Vitis vinifera] 0.986 0.988 0.749 1e-133
225464509359 PREDICTED: SKP1-like protein 21-like [Vi 0.983 0.983 0.748 1e-132
>gi|225454254|ref|XP_002275024.1| PREDICTED: SKP1-like protein 21-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 264/352 (75%), Positives = 298/352 (84%), Gaps = 4/352 (1%)

Query: 1   MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISL 60
           M+EVD AVIKPEMMKSYIWLQTADGSIQ+VEQEVAMFCPLIC E+IQ+GMGSSKN AI+L
Sbjct: 1   MAEVDTAVIKPEMMKSYIWLQTADGSIQEVEQEVAMFCPLICDEIIQRGMGSSKNNAITL 60

Query: 61  PQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLV 120
           PQRVNP MLSL+LDYCRFHQV G SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLV
Sbjct: 61  PQRVNPVMLSLVLDYCRFHQVIGRSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLV 120

Query: 121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKE 180
           DLTSRALAR+IEGKTPEEIRE FHLPDDLTEEEKLEPLKN TDDPRIRLLNRLYA+KRKE
Sbjct: 121 DLTSRALARMIEGKTPEEIRETFHLPDDLTEEEKLEPLKNITDDPRIRLLNRLYARKRKE 180

Query: 181 LKEREKLKNVESEEERVDERSVDDLLQFINGGERDSKGTKSSKNKKKNQRKKDQLKDTCP 240
           LKERE+LKNVE EEE VD RSVDDLL FINGG  DSKG  +SKNKKKN+R+KDQ K+T  
Sbjct: 181 LKERERLKNVEVEEECVDYRSVDDLLSFINGGNEDSKGVGTSKNKKKNRRRKDQQKNTSS 240

Query: 241 IESIKTDKQESNGLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKVDFDDVDIDDEI 300
             +I+T  ++SN L  V H  E+ N   +   E S +Q+++D +F  + +F+D DIDDE 
Sbjct: 241 NHAIETTHKKSNCLKSVHHDVEINNNLQSSPSERSKLQDIQDDMFSPQANFEDGDIDDEF 300

Query: 301 DPALKEKLDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRR 352
           DPA++EK+DREVEDF R LNSDWPERMQEILSLG + KP+     GNG++ R
Sbjct: 301 DPAIQEKIDREVEDFERILNSDWPERMQEILSLGRERKPI----NGNGSLSR 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297745305|emb|CBI40385.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224067902|ref|XP_002302590.1| predicted protein [Populus trichocarpa] gi|222844316|gb|EEE81863.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255541614|ref|XP_002511871.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223549051|gb|EEF50540.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356531993|ref|XP_003534559.1| PREDICTED: SKP1-like protein 21-like [Glycine max] Back     alignment and taxonomy information
>gi|297820994|ref|XP_002878380.1| hypothetical protein ARALYDRAFT_486615 [Arabidopsis lyrata subsp. lyrata] gi|297324218|gb|EFH54639.1| hypothetical protein ARALYDRAFT_486615 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18411999|ref|NP_567113.1| SKP1-like protein 21 [Arabidopsis thaliana] gi|75155821|sp|Q8LF97.1|ASK21_ARATH RecName: Full=SKP1-like protein 21; Short=AtSK21 gi|21537190|gb|AAM61531.1| putative SKP1-like protein [Arabidopsis thaliana] gi|332646677|gb|AEE80198.1| SKP1-like protein 21 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186511286|ref|NP_001118876.1| SKP1-like protein 21 [Arabidopsis thaliana] gi|332646678|gb|AEE80199.1| SKP1-like protein 21 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|302143834|emb|CBI22695.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225464509|ref|XP_002269721.1| PREDICTED: SKP1-like protein 21-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
TAIR|locus:505006407351 SK21 "AT3G61415" [Arabidopsis 0.963 0.985 0.615 2.3e-103
TAIR|locus:2050709352 SK20 "AT2G45950" [Arabidopsis 0.938 0.957 0.586 2.6e-95
DICTYBASE|DDB_G0269230162 fpaA "ubiquitin ligase subunit 0.376 0.833 0.369 2.2e-18
DICTYBASE|DDB_G0273615162 fpaB-2 "ubiquitin ligase subun 0.376 0.833 0.369 2.8e-18
DICTYBASE|DDB_G0273251162 fpaB-1 "ubiquitin ligase subun 0.376 0.833 0.369 2.8e-18
TAIR|locus:2093084153 SK9 "AT3G21850" [Arabidopsis t 0.384 0.901 0.344 4.6e-18
UNIPROTKB|Q5ZKF5163 SKP1 "S-phase kinase-associate 0.392 0.865 0.352 5.3e-17
UNIPROTKB|Q3ZCF3163 SKP1 "S-phase kinase-associate 0.392 0.865 0.352 5.3e-17
UNIPROTKB|P63208163 SKP1 "S-phase kinase-associate 0.392 0.865 0.352 5.3e-17
UNIPROTKB|P63209163 SKP1 "S-phase kinase-associate 0.392 0.865 0.352 5.3e-17
TAIR|locus:505006407 SK21 "AT3G61415" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
 Identities = 219/356 (61%), Positives = 244/356 (68%)

Query:     1 MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISL 60
             MSE +MA+IKPEMMKSYIWL+TADGSIQQVEQEVAMFCP+ICQEVIQKG+GSSKNYAISL
Sbjct:     1 MSEGEMAIIKPEMMKSYIWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISL 60

Query:    61 PQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLV 120
             PQRVNPAMLSLI DYCRFHQVPG SNKERK +DEKFIRMDTKRLCELTSAADSLQLKPLV
Sbjct:    61 PQRVNPAMLSLIFDYCRFHQVPGRSNKERKVYDEKFIRMDTKRLCELTSAADSLQLKPLV 120

Query:   121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAXXXXX 180
             DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNT DDPRIRLLNRLYA     
Sbjct:   121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTMDDPRIRLLNRLYAKKRKE 180

Query:   181 XXXXXXXXNXXXXXXXXXXXXXXXLLQFINGGERDSKGTXXXXXXXXXXXXXXXXXXTCP 240
                     +               LL FING +     T                     
Sbjct:   181 LKEREKLKSVEVEEHVDERSVDD-LLSFINGRDPKVVKTSKSKKKNKKRKEQKNGSSNGT 239

Query:   241 IESIKTDKQESNGLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKXXXXXXXXXXXX 300
              E+++ D    + L+    SAE+ +  ++ LG+ SN+ +MED IF  K            
Sbjct:   240 CEALEKDL---HNLDSKSQSAEIVDNTASCLGDVSNLPSMEDDIFTPKTEFEDGYIDDEI 296

Query:   301 XPALKEKLDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYANP 356
              PALKE LDREVEDFARRLNS W      +LS+G + +P+  S  GNGT RR   P
Sbjct:   297 DPALKELLDREVEDFARRLNSSW------VLSIGQERQPVNFSINGNGTSRRLTGP 346
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS
TAIR|locus:2050709 SK20 "AT2G45950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269230 fpaA "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273615 fpaB-2 "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273251 fpaB-1 "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2093084 SK9 "AT3G21850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKF5 SKP1 "S-phase kinase-associated protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCF3 SKP1 "S-phase kinase-associated protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P63208 SKP1 "S-phase kinase-associated protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P63209 SKP1 "S-phase kinase-associated protein 1" [Cavia porcellus (taxid:10141)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8MQG7ASK20_ARATHNo assigned EC number0.70330.94150.9602nono
Q8LF97ASK21_ARATHNo assigned EC number0.71910.96370.9857yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026878001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (374 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
smart00512104 smart00512, Skp1, Found in Skp1 protein family 2e-23
pfam0146678 pfam01466, Skp1, Skp1 family, dimerisation domain 9e-17
COG5201158 COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen 4e-13
>gnl|CDD|214704 smart00512, Skp1, Found in Skp1 protein family Back     alignment and domain information 
 Score = 92.7 bits (231), Expect = 2e-23
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 4/105 (3%)

Query: 15  KSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILD 74
             YI L ++DG + +VE+EVA     I   +   G+    N  I LP  V   +LS +++
Sbjct: 1   SKYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLPN-VTSKILSKVIE 59

Query: 75  YCRFHQVPGSSNKE---RKSFDEKFIRMDTKRLCELTSAADSLQL 116
           YC  H     S  +     ++D +F+++D + L EL  AA+ L +
Sbjct: 60  YCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI 104

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. Length = 104
>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain Back     alignment and domain information
>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 100.0
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 100.0
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 99.92
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 99.87
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 99.65
KOG3473112 consensus RNA polymerase II transcription elongati 99.4
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 97.92
PHA02713 557 hypothetical protein; Provisional 97.69
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 97.25
PHA03098 534 kelch-like protein; Provisional 97.11
PHA02790 480 Kelch-like protein; Provisional 96.85
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 96.36
KOG2716230 consensus Polymerase delta-interacting protein PDI 88.61
KOG3433203 consensus Protein involved in meiotic recombinatio 82.14
COG5124209 Protein predicted to be involved in meiotic recomb 80.17
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-42  Score=309.02  Aligned_cols=146  Identities=36%  Similarity=0.588  Sum_probs=134.2

Q ss_pred             CCCccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCC--------
Q 018181           13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS--------   84 (359)
Q Consensus        13 ~~~~~IkL~SsDG~iF~Vs~eaA~qS~tI~~mL~~~g~g~~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~--------   84 (359)
                      |++++|+|+|+||++|+|+.++|++|.+|++++.+.|++... .+|||| +|+|.||++||+||+||+.+++        
T Consensus         2 ~~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~-~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~   79 (162)
T KOG1724|consen    2 MSKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADEN-DPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKEL   79 (162)
T ss_pred             CCCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccC-CccccC-ccCHHHHHHHHHHHHHcccccccccccccc
Confidence            668899999999999999999999999999999999886432 699999 7999999999999999998643        


Q ss_pred             -CcccchhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 018181           85 -SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN  160 (359)
Q Consensus        85 -s~~ei~~WD~eFL~~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T~EEEeEi~k~  160 (359)
                       ....++.||.+||++|..+||+||.|||||+|++|+++||++||+||+||||+|||++|||++|+|+||+.+++++
T Consensus        80 ~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e  156 (162)
T KOG1724|consen   80 PEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKE  156 (162)
T ss_pred             cccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhc
Confidence             2234899999999999999999999999999999999999999999999999999999999999999988777765

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
3l2o_A149 Structure-Based Mechanism Of Dimerization-Dependent 2e-16
1fqv_B149 Insights Into Scf Ubiquitin Ligases From The Struct 2e-16
2ast_A159 Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len 4e-16
2e31_B166 Structural Basis For Selection Of Glycosylated Subs 4e-16
1p22_B145 Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex 5e-15
1fs1_B141 Insights Into Scf Ubiquitin Ligases From The Struct 9e-15
2p1m_A160 Tir1-ask1 Complex Structure Length = 160 1e-13
1ldk_D133 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 1e-12
3mks_A169 Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH 3e-09
1nex_A169 Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp 6e-09
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149 Back     alignment and structure 
Iteration: 1

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 8/137 (5%)
Query: 20  LQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFH 79
           LQ++DG I +V+ E+A     I   +   GM       + LP  VN A+L  ++ +C  H
Sbjct: 6   LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-----VPLP-NVNAAILKKVIQWCTHH 59
Query: 80  Q--VPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPE 137
           +    GS   +   +D++F+++D   L EL  AA+ L +K L+D+T + +A +I+GKTPE
Sbjct: 60  KDDPGGSGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPE 119
Query: 138 EIREIFHLPDDLTEEEK 154
           EIR+ F++ +D TEEE+
Sbjct: 120 EIRKTFNIKNDFTEEEE 136
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149 Back     alignment and structure
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166 Back     alignment and structure
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145 Back     alignment and structure
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141 Back     alignment and structure
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160 Back     alignment and structure
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 133 Back     alignment and structure
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 169 Back     alignment and structure
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 169 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 7e-28
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 2e-27
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 2e-25
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 5e-24
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 9e-04
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141 Back     alignment and structure
 Score =  105 bits (263), Expect = 7e-28
 Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 16/146 (10%)

Query: 16  SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDY 75
             I LQ++DG I +V+ E+A     I   +   GM       + LP  VN A+L  ++ +
Sbjct: 2   PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-----PVPLPN-VNAAILKKVIQW 55

Query: 76  CRFHQ----------VPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSR 125
           C  H+                 +   +D++F+++D   L EL  AA+ L +K L+D+T +
Sbjct: 56  CTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCK 115

Query: 126 ALARIIEGKTPEEIREIFHLPDDLTE 151
            +A +I+GKTPEEIR+ F++ +D TE
Sbjct: 116 TVANMIKGKTPEEIRKTFNIKNDFTE 141
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169 Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160 Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 100.0
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 100.0
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 100.0
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 100.0
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 99.9
2fnj_C96 Transcription elongation factor B polypeptide 1; b 99.9
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 99.9
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.84
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 98.29
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 98.21
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 98.08
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 98.07
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 98.04
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 97.98
2vpk_A116 Myoneurin; transcription regulation, transcription 97.91
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 97.87
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 97.87
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 97.85
3b84_A119 Zinc finger and BTB domain-containing protein 48; 97.84
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 97.84
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 97.71
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 97.62
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 97.58
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 97.55
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 97.49
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 97.49
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 97.24
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 97.22
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 81.17
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
Probab=100.00  E-value=4.1e-45  Score=326.15  Aligned_cols=149  Identities=26%  Similarity=0.471  Sum_probs=129.8

Q ss_pred             CCCCCccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCC---CCCCcccccCCCCCHHHHHHHHHHHHhccCCCC---
Q 018181           11 PEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMG---SSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS---   84 (359)
Q Consensus        11 pe~~~~~IkL~SsDG~iF~Vs~eaA~qS~tI~~mL~~~g~g---~~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~---   84 (359)
                      |.|++++|+|+|+||++|.|+..+|++|++|++||.+.+..   .+...+|||| +|++.+|++||+||+||+.+++   
T Consensus         2 ~~m~~~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~Iplp-nV~s~iL~kVieyc~~h~~~~~~~~   80 (169)
T 3v7d_A            2 AHMVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVP-NVRSSVLQKVIEWAEHHRDSNFPDE   80 (169)
T ss_dssp             ----CCEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECT-TCCHHHHHHHHHHHHHTTTCCCCC-
T ss_pred             CCCCCCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeC-CCCHHHHHHHHHHHHHcccCCCccc
Confidence            45777899999999999999999999999999999876641   1123789999 8999999999999999997642   


Q ss_pred             ------CcccchhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccc
Q 018181           85 ------SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPL  158 (359)
Q Consensus        85 ------s~~ei~~WD~eFL~~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T~EEEeEi~  158 (359)
                            ....++.||++||++|+.+||+||.|||||+|++|+++||++||++|+||||+|||++|||++||||||+++++
T Consensus        81 ~~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir  160 (169)
T 3v7d_A           81 DDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR  160 (169)
T ss_dssp             -------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHH
T ss_pred             ccccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHH
Confidence                  23468999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc
Q 018181          159 KN  160 (359)
Q Consensus       159 k~  160 (359)
                      ++
T Consensus       161 ~e  162 (169)
T 3v7d_A          161 RE  162 (169)
T ss_dssp             TT
T ss_pred             Hh
Confidence            86
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 359
d1nexa170 a.157.1.1 (A:116-185) Centromere DNA-binding prote 2e-20
d1fs1b155 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, 2e-18
d2c9wc196 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens 1e-13
d1hv2a_99 d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy 1e-13
d1nexa272 d.42.1.1 (A:4-103) Centromere DNA-binding protein 1e-10
d1fs1b261 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Sk 5e-08
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 70 Back     information, alignment and structure

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.0 bits (203), Expect = 2e-20
 Identities = 26/67 (38%), Positives = 45/67 (67%)

Query: 90  KSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDL 149
            S+D +F+++D + L E+  AA+ L +KPL+D   + +A +I G++PEEIR  F++ +D 
Sbjct: 2   DSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDF 61

Query: 150 TEEEKLE 156
           T EE+  
Sbjct: 62  TPEEEAA 68
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99 Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72 Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 99.93
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 99.88
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 99.88
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 99.84
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 99.7
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 99.7
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 98.06
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 98.0
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.3e-26  Score=178.95  Aligned_cols=70  Identities=37%  Similarity=0.661  Sum_probs=67.6

Q ss_pred             chhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccc
Q 018181           89 RKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPL  158 (359)
Q Consensus        89 i~~WD~eFL~~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T~EEEeEi~  158 (359)
                      +++||.+|+++|..+||+|+.|||||+|++|+++||++||.+|+||||+|||++|||++|+||||+++++
T Consensus         1 i~~wD~~F~~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f~I~~D~t~eEe~~ir   70 (70)
T d1nexa1           1 VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR   70 (70)
T ss_dssp             CCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHTCC
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHhcC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999864
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure