Query 018182
Match_columns 359
No_of_seqs 154 out of 1450
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 11:13:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g1u_A Hemin transport system 14.5 3.2E+02 0.011 25.5 6.6 9 219-227 45-53 (357)
2 1vry_A Glycine receptor alpha- 10.7 2.1E+02 0.0072 20.5 3.1 26 126-151 38-63 (76)
3 2zy9_A Mg2+ transporter MGTE; 10.7 2E+02 0.0069 27.8 4.1 28 82-109 411-438 (473)
4 2l9u_A Receptor tyrosine-prote 8.9 2.4E+02 0.0083 17.0 2.3 11 306-316 20-30 (40)
5 2a9h_A Voltage-gated potassium 8.7 7.6E+02 0.026 19.7 6.9 16 338-353 112-127 (155)
6 2ks1_B Epidermal growth factor 8.5 2.9E+02 0.0099 17.6 2.8 25 47-71 13-37 (44)
7 2zt9_E Cytochrome B6-F complex 7.7 3.3E+02 0.011 16.1 2.5 15 301-315 10-24 (31)
8 2lat_A Dolichyl-diphosphooligo 6.9 4E+02 0.014 16.3 2.8 17 341-357 8-24 (37)
9 3j1z_P YIIP, cation efflux fam 6.4 7.1E+02 0.024 22.1 5.6 17 298-314 43-59 (306)
10 3eff_K Voltage-gated potassium 5.9 9.4E+02 0.032 18.3 6.1 15 339-353 69-83 (139)
No 1
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=14.50 E-value=3.2e+02 Score=25.54 Aligned_cols=9 Identities=22% Similarity=0.364 Sum_probs=3.3
Q ss_pred HHHHHHHhc
Q 018182 219 IIIGISLGA 227 (359)
Q Consensus 219 ~~eGlalG~ 227 (359)
++-.+.+|.
T Consensus 45 ~~~sl~~G~ 53 (357)
T 4g1u_A 45 ALGSANMGA 53 (357)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHhCC
Confidence 334455554
No 2
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=10.68 E-value=2.1e+02 Score=20.51 Aligned_cols=26 Identities=8% Similarity=0.152 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccc
Q 018182 126 GFVAMMSAIGTLMIDTFATGYYKRQH 151 (359)
Q Consensus 126 ~~~~~~Gf~l~~llE~l~~~~~~~~~ 151 (359)
.++++..|.+.-++|..+-.|..+++
T Consensus 38 w~~~C~~FVF~aLlEya~V~y~~r~~ 63 (76)
T 1vry_A 38 WLAVCLLFVFSALLEYAAVNFVSRKK 63 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35566778888899999877765543
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=10.68 E-value=2e+02 Score=27.78 Aligned_cols=28 Identities=18% Similarity=0.056 Sum_probs=13.0
Q ss_pred HHHHHHhhhhhhhhhhhHhcchhchhhc
Q 018182 82 FFMIKAFAAGVILATGFVHILPDAFDNL 109 (359)
Q Consensus 82 l~~~~~fa~Gv~L~~aflhLLPea~e~~ 109 (359)
+....++...++++..+--++|=....+
T Consensus 411 ~~v~~a~~~~~~~a~~~g~~~p~~~~~~ 438 (473)
T 2zy9_A 411 PVVGVSLVLIVFFANLVGAMLPFLLRRL 438 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444444444555444433
No 4
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=8.87 E-value=2.4e+02 Score=17.05 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=7.3
Q ss_pred HHHHHHHHHHH
Q 018182 306 NSASAGILIYM 316 (359)
Q Consensus 306 ~alaaGtflYV 316 (359)
.-+-.|||+|-
T Consensus 20 f~~lg~tflyw 30 (40)
T 2l9u_A 20 FMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhCceeEEE
Confidence 44567888884
No 5
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=8.65 E-value=7.6e+02 Score=19.68 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 018182 338 QLGANISLLLGAGCMS 353 (359)
Q Consensus 338 ~~~~~~~~~lG~~~Ma 353 (359)
|+...+.++.|.++++
T Consensus 112 r~~~~~~~l~Gv~~~a 127 (155)
T 2a9h_A 112 RCVAVVVMVAGITSYG 127 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444555554443
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=8.51 E-value=2.9e+02 Score=17.59 Aligned_cols=25 Identities=8% Similarity=0.180 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHhhchhhhcccc
Q 018182 47 YKVIAIASILVAGAFGVSLPLLGKK 71 (359)
Q Consensus 47 ~ki~~~~~i~~~sl~g~~lP~~~~~ 71 (359)
.-.+.+..+++..++....-++.++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhh
Confidence 3333344344444555444444444
No 7
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=7.66 E-value=3.3e+02 Score=16.06 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHH
Q 018182 301 VQGVFNSASAGILIY 315 (359)
Q Consensus 301 ~~gil~alaaGtflY 315 (359)
..+++.++|+|.++=
T Consensus 10 ~l~~~~~iA~GL~fG 24 (31)
T 2zt9_E 10 FLALFTGIAAGLLFG 24 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777888887653
No 8
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=6.92 E-value=4e+02 Score=16.32 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 018182 341 ANISLLLGAGCMSVLAK 357 (359)
Q Consensus 341 ~~~~~~lG~~~Ma~l~~ 357 (359)
..++..+|.+.|.++-.
T Consensus 8 ~~lan~lG~~~~~LIVl 24 (37)
T 2lat_A 8 AIFANMLGVSLFLLVVL 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788899999887653
No 9
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=6.37 E-value=7.1e+02 Score=22.13 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018182 298 ALIVQGVFNSASAGILI 314 (359)
Q Consensus 298 ~~~~~gil~alaaGtfl 314 (359)
++-+-...+.++.+..+
T Consensus 43 aDa~hsl~D~~s~~i~l 59 (306)
T 3j1z_P 43 ASLTDSFADTLASIINF 59 (306)
T ss_dssp THHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 10
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=5.93 E-value=9.4e+02 Score=18.31 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 018182 339 LGANISLLLGAGCMS 353 (359)
Q Consensus 339 ~~~~~~~~lG~~~Ma 353 (359)
+...+.+++|..+++
T Consensus 69 ~~~~~~~~~G~~~~~ 83 (139)
T 3eff_K 69 LVAVVVMVAGITSFG 83 (139)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444544443
Done!