Query 018182
Match_columns 359
No_of_seqs 154 out of 1450
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 11:13:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018182.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018182hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 13.9 97 0.0071 23.9 4.6 18 54-71 122-139 (173)
2 d1jb0j_ f.23.18.1 (J:) Subunit 4.7 3.4E+02 0.025 15.5 2.9 18 297-314 10-27 (41)
3 d2bs2c1 f.21.2.1 (C:1-254) Fum 4.6 3.8E+02 0.027 21.4 4.6 65 79-143 23-96 (254)
4 d1v54l_ f.23.6.1 (L:) Mitochon 4.5 2.1E+02 0.015 16.8 2.0 23 46-70 17-39 (46)
5 d1ugla_ g.3.7.5 (A:) S-locus p 4.5 1.3E+02 0.0096 17.5 1.0 15 19-36 27-41 (50)
6 d2axtk1 f.23.36.1 (K:10-46) Ph 4.3 1.8E+02 0.013 16.2 1.5 9 102-110 2-10 (37)
7 d2axtm1 f.23.35.1 (M:1-36) Pho 3.9 1.4E+02 0.01 16.7 0.7 9 95-103 10-18 (36)
8 d1r3jc_ f.14.1.1 (C:) Potassiu 3.6 5.8E+02 0.042 16.7 7.2 20 336-355 66-85 (103)
9 d1kqfb2 f.23.22.1 (B:246-290) 3.4 4.6E+02 0.034 15.2 3.0 17 302-318 18-34 (45)
10 d1rkla_ f.23.30.1 (A:) Oligosa 3.3 3.9E+02 0.029 14.4 2.3 16 343-358 10-25 (36)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=13.89 E-value=97 Score=23.89 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=9.4
Q ss_pred HHHHHHHhhchhhhcccc
Q 018182 54 SILVAGAFGVSLPLLGKK 71 (359)
Q Consensus 54 ~i~~~sl~g~~lP~~~~~ 71 (359)
.+.+++++|..+|++.+|
T Consensus 122 ~~~ia~~~G~~lPlll~k 139 (173)
T d2yvxa3 122 IVFFANLVGAMLPFLLRR 139 (173)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555444
No 2
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=4.66 E-value=3.4e+02 Score=15.47 Aligned_cols=18 Identities=39% Similarity=0.658 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHHHHHH
Q 018182 297 TALIVQGVFNSASAGILI 314 (359)
Q Consensus 297 ~~~~~~gil~alaaGtfl 314 (359)
++.++..+-.++.||.++
T Consensus 10 tAPVla~~w~~~tAG~lI 27 (41)
T d1jb0j_ 10 TAPVLAAIWMTITAGILI 27 (41)
T ss_dssp BHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 355677778888999875
No 3
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=4.61 E-value=3.8e+02 Score=21.41 Aligned_cols=65 Identities=8% Similarity=-0.075 Sum_probs=35.4
Q ss_pred chHHHHHHHhhhhhhhhhhhHhcc--------hhchhhcCCCCCC-CCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 018182 79 NDTFFMIKAFAAGVILATGFVHIL--------PDAFDNLTSPCLV-ENPWGDFPFSGFVAMMSAIGTLMIDTFA 143 (359)
Q Consensus 79 ~~~l~~~~~fa~Gv~L~~aflhLL--------Pea~e~~~~~~~~-~~~~~~~p~~~~~~~~Gf~l~~llE~l~ 143 (359)
+-.+..+.+++|=++..-.+.||+ ||+++...+.... .......|+...+..++++..+++--..
T Consensus 23 ~~~l~~l~slTGlvL~lFl~~Hm~~n~~il~g~eafn~~a~~l~~~~~~~~~~p~l~~i~~~~l~~~ll~H~~~ 96 (254)
T d2bs2c1 23 PAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHAFL 96 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCHHHHHHHHHHTTCTTTSSSCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcccccCCccHHHHHHHHHHHHHHHHHHHH
Confidence 335667777777776667777876 6666654331111 0111234666555555666666555443
No 4
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.50 E-value=2.1e+02 Score=16.81 Aligned_cols=23 Identities=17% Similarity=0.574 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHhhchhhhccc
Q 018182 46 KYKVIAIASILVAGAFGVSLPLLGK 70 (359)
Q Consensus 46 ~~ki~~~~~i~~~sl~g~~lP~~~~ 70 (359)
.+|+.++++++++|-++. |+++.
T Consensus 17 k~rLla~m~~~fGsgfa~--PF~iv 39 (46)
T d1v54l_ 17 KWRLLAMMTLFFGSGFAA--PFFIV 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHhccccc--hHHHH
Confidence 467777888888877664 76543
No 5
>d1ugla_ g.3.7.5 (A:) S-locus pollen protein {Brassica rapa [TaxId: 3711]}
Probab=4.47 E-value=1.3e+02 Score=17.47 Aligned_cols=15 Identities=47% Similarity=1.112 Sum_probs=10.8
Q ss_pred hcCccccccccccccccc
Q 018182 19 LYPTLVFGECVCDVEAMS 36 (359)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~ 36 (359)
+|| +|.|+|+.+.||
T Consensus 27 ly~---~gqc~csdskmn 41 (50)
T d1ugla_ 27 LYP---RGQCTCSDSKMN 41 (50)
T ss_dssp HCC---CSSCCCBCCSSS
T ss_pred ccC---CCcceecccccc
Confidence 465 489999988543
No 6
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.31 E-value=1.8e+02 Score=16.18 Aligned_cols=9 Identities=33% Similarity=0.766 Sum_probs=5.8
Q ss_pred chhchhhcC
Q 018182 102 LPDAFDNLT 110 (359)
Q Consensus 102 LPea~e~~~ 110 (359)
|||+...++
T Consensus 2 LPeay~~f~ 10 (37)
T d2axtk1 2 LPEAYAIFD 10 (37)
T ss_dssp CCGGGGGCH
T ss_pred cchhhhhhc
Confidence 577776654
No 7
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.93 E-value=1.4e+02 Score=16.66 Aligned_cols=9 Identities=33% Similarity=0.656 Sum_probs=3.5
Q ss_pred hhhhHhcch
Q 018182 95 ATGFVHILP 103 (359)
Q Consensus 95 ~~aflhLLP 103 (359)
+++++-++|
T Consensus 10 At~LFilvP 18 (36)
T d2axtm1 10 ATALFVLVP 18 (36)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 8
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.63 E-value=5.8e+02 Score=16.67 Aligned_cols=20 Identities=10% Similarity=0.116 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018182 336 RLQLGANISLLLGAGCMSVL 355 (359)
Q Consensus 336 ~~~~~~~~~~~lG~~~Ma~l 355 (359)
..|+...+.++.|..+++++
T Consensus 66 ~gr~~~~~~~~~Gi~~~~~~ 85 (103)
T d1r3jc_ 66 WGRCVAVVVMVAGITSFGLV 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34566777788887777543
No 9
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=3.45 E-value=4.6e+02 Score=15.20 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018182 302 QGVFNSASAGILIYMAL 318 (359)
Q Consensus 302 ~gil~alaaGtflYV~~ 318 (359)
.++..++++|.|=||+.
T Consensus 18 ~~~~~~~~~~~fHYv~v 34 (45)
T d1kqfb2 18 AGFIATFAGLIFHYIGI 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhee
Confidence 44556778888888876
No 10
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.28 E-value=3.9e+02 Score=14.38 Aligned_cols=16 Identities=13% Similarity=0.449 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhc
Q 018182 343 ISLLLGAGCMSVLAKW 358 (359)
Q Consensus 343 ~~~~lG~~~Ma~l~~w 358 (359)
+.+.+|...|.++-++
T Consensus 10 ~~i~fgi~mmtliviy 25 (36)
T d1rkla_ 10 LAITFGIVMMTLIVIY 25 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHH
Confidence 4678888888877553
Done!