Query 018183
Match_columns 359
No_of_seqs 171 out of 1268
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 11:14:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 2.2E-81 7.7E-86 625.4 41.4 352 4-359 1-354 (435)
2 1w63_M Adaptor-related protein 100.0 3.3E-81 1.1E-85 622.1 34.8 343 3-359 1-344 (423)
3 1i31_A Clathrin coat assembly 100.0 5.2E-54 1.8E-58 410.5 23.3 231 126-359 1-233 (314)
4 4en2_M AP-1 complex subunit MU 100.0 1.1E-49 3.9E-54 371.6 19.9 187 167-359 1-187 (266)
5 3ml6_A Chimeric complex betwee 100.0 3.2E-49 1.1E-53 385.8 24.0 195 165-359 105-304 (385)
6 3l81_A AP-4 complex subunit MU 100.0 4E-47 1.4E-51 359.9 21.1 186 165-359 22-212 (301)
7 1w63_Q Adapter-related protein 100.0 7.7E-33 2.6E-37 238.8 15.5 137 4-142 1-140 (158)
8 2vgl_S AP-2 complex subunit si 100.0 2.4E-32 8.1E-37 231.9 14.3 136 4-141 1-140 (142)
9 3tjz_C Coatomer subunit zeta-1 100.0 4E-31 1.4E-35 226.4 16.2 135 3-141 11-150 (153)
10 3g9h_A Suppressor of yeast pro 98.3 5.7E-05 2E-09 71.0 19.0 156 177-359 67-237 (328)
11 3cue_A Transport protein parti 94.9 0.32 1.1E-05 42.9 11.9 26 3-28 1-26 (219)
12 4b93_A Vesicle-associated memb 94.8 0.22 7.5E-06 43.1 10.6 88 5-97 4-92 (189)
13 3bw6_A Synaptobrevin homolog Y 94.5 0.6 2.1E-05 38.5 12.0 97 1-97 3-110 (144)
14 2j3t_C Trafficking protein par 94.3 0.19 6.5E-06 41.7 8.6 92 3-96 1-109 (145)
15 4afi_A AP-3 complex subunit de 93.4 0.84 2.9E-05 38.9 11.2 90 3-97 54-144 (173)
16 2nut_C Vesicle-trafficking pro 91.8 1.5 5.2E-05 37.8 11.0 48 50-97 54-101 (196)
17 2vx8_A Nucleoporin-like protei 91.7 1.8 6E-05 36.7 10.9 90 3-97 44-134 (169)
18 3cue_C Transport protein parti 91.2 0.27 9.1E-06 41.4 5.2 90 3-96 1-115 (159)
19 2j3w_A Sedlin, trafficking pro 90.5 2.6 8.9E-05 34.4 10.6 91 3-97 3-113 (142)
20 3cpt_A Mitogen-activated prote 90.1 2.7 9.3E-05 34.4 10.0 91 5-95 38-136 (143)
21 2fh5_A Signal recognition part 87.8 4.4 0.00015 34.7 10.3 94 3-97 9-104 (185)
22 3kyq_A YKT6, synaptobrevin hom 84.9 7.1 0.00024 33.8 10.3 95 3-97 2-107 (199)
23 1nrj_A Signal recognition part 79.8 4.8 0.00016 32.9 6.6 71 4-74 1-93 (158)
24 1vet_B P14, late endosomal/lys 31.3 1.9E+02 0.0064 22.6 12.4 91 5-96 19-119 (125)
25 2wl8_A Peroxisomal biogenesis 30.5 1.1E+02 0.0036 24.4 5.9 44 81-126 64-108 (126)
26 2j3t_D Trafficking protein par 26.4 48 0.0017 29.0 3.5 22 3-24 1-22 (219)
27 2j3t_D Trafficking protein par 26.3 99 0.0034 27.0 5.5 84 10-95 86-180 (219)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=2.2e-81 Score=625.41 Aligned_cols=352 Identities=47% Similarity=0.884 Sum_probs=301.6
Q ss_pred eeEEEEEEcCCCCEEEEEcccCCCCCchHHHHHHHhhcccCCCCCCeEEeCCEEEEEEEeCcEEEEEEEcCCcCHHHHHH
Q 018183 4 AASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFK 83 (359)
Q Consensus 4 mI~~~~Iln~~G~~li~r~yr~~~~~~~~~~f~~~v~~~~~~~~~p~~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~e 83 (359)
||+++||+|++|+++++|+|+++.++...+.|++++...++...+|++++++++|+|+++++|||+++++.++||++++|
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le 80 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFE 80 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHH
Confidence 89999999999999999999998888888999999886544457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHhhHHHHHHHHHHHHcCCcccccCHHHHhhhhcccCCCCCCCCCCCCCCCCCcccccc
Q 018183 84 FVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVT 163 (359)
Q Consensus 84 ~L~~~~~~l~~~~~~~l~e~~i~~n~~~v~~llDEiid~G~p~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (359)
|||+|+++|++||+ +++|++|++||++||++||||+|+|+||+|++++|+.++.+++++.++.... . ....+.+.+
T Consensus 81 ~L~~~v~vl~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~-~--~~~~~~~~~ 156 (435)
T 2vgl_M 81 FLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKE-E--QSQITSQVT 156 (435)
T ss_dssp HHHHHHHHHHHHHS-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHh-ccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccc-c--ccccccccc
Confidence 99999999999999 8999999999999999999999999999999999999999999876542111 0 011233456
Q ss_pred cccccccCCcccccccEEEEEEEeEeEEEcccCcEEEEEEEEEEEEEEeeCCCCeeEEEecCcccccccccccC--CCCC
Q 018183 164 GAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKS--RPTK 241 (359)
Q Consensus 164 ~~~~wR~~~~~~~~neI~vdv~E~l~~~~~~~G~v~~~~V~G~i~~~~~LsG~p~~~l~ln~~~~~~~~~~~~~--~~~~ 241 (359)
++++||+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..+++...... .+..
T Consensus 157 ~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~ 236 (435)
T 2vgl_M 157 GQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKS 236 (435)
T ss_dssp --CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC--------------
T ss_pred cccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhccccccccccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999876553221000 0000
Q ss_pred CCCeEEccCcceeceecccCcCCcCeEEEeCCCCceEEEEEEecCCCCCCeEEEeEEEEeCceEEEEEEEEeecCCCcee
Q 018183 242 SGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMF 321 (359)
Q Consensus 242 ~~~~i~l~d~~fH~cV~~~~f~~~~~i~F~PPdg~F~Lm~Yr~~~~~~lP~~i~~~~~~~~~~~~~~~v~l~~~~~~~~~ 321 (359)
...++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+..+||.+.|++++.|+++++++++++++++++..
T Consensus 237 ~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~ 316 (435)
T 2vgl_M 237 GKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLL 316 (435)
T ss_dssp ---CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEEEEEECSCTTSE
T ss_pred ccCceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEEEEeCCCCCCce
Confidence 12467899999999999999999999999999999999999999888899999999998777899999999999999889
Q ss_pred eeeeEEEecCCCCcceeEEEEceeeEEEeCCCCeEeeC
Q 018183 322 ALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWK 359 (359)
Q Consensus 322 ~~~v~i~iP~P~~~~~~~~~~s~G~~~y~~~~~~lvW~ 359 (359)
++||.|+||+|+++.++.++++.|+++|++++++++|+
T Consensus 317 ~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~ 354 (435)
T 2vgl_M 317 AQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWK 354 (435)
T ss_dssp EEEEEEEEECCSSCCCEEEEESSSEEEEETTTTEEEEE
T ss_pred eeEEEEEEECCCCCCCceEEecceeEEEccCCCEEEEE
Confidence 99999999999999999999999999999999999995
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=3.3e-81 Score=622.10 Aligned_cols=343 Identities=45% Similarity=0.793 Sum_probs=302.5
Q ss_pred ceeEEEEEEcCCCCEEEEEcccCCCCCchHHHHHHHhhcccC-CCCCCeEEeCCEEEEEEEeCcEEEEEEEcCCcCHHHH
Q 018183 3 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKE-LGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACA 81 (359)
Q Consensus 3 ~mI~~~~Iln~~G~~li~r~yr~~~~~~~~~~f~~~v~~~~~-~~~~p~~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~ 81 (359)
|||+|+||+|++|+++++|+|+++.++..++.|.+++....+ ...+|++++++++|+|+++++|||+++++.++||+++
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 899999999999999999999998888889999999886433 3478999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHhhHHHHHHHHHHHHcCCcccccCHHHHhhhhcccCCCCCCCCCCCCCCCCCcccc
Q 018183 82 FKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQ 161 (359)
Q Consensus 82 ~e~L~~~~~~l~~~~~~~l~e~~i~~n~~~v~~llDEiid~G~p~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
+||||+|+++|++||+ +++|++|++||++||++||||+|+|+|++|++++|+++|.+++++.. +... .++.+
T Consensus 81 le~L~~~v~~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~---~~~~----~~~~~ 152 (423)
T 1w63_M 81 FSFLYKVVQVFSEYFK-ELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLE---TGAP----RPPAT 152 (423)
T ss_dssp HHHHHHHHHHHHHHSS-CCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCC---CC-----------
T ss_pred HHHHHHHHHHHHHHHh-hcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCcccc---cccc----CCccc
Confidence 9999999999999998 99999999999999999999999999999999999999999987621 1000 12234
Q ss_pred cccccccccCCcccccccEEEEEEEeEeEEEcccCcEEEEEEEEEEEEEEeeCCCCeeEEEecCcccccccccccCCCCC
Q 018183 162 VTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTK 241 (359)
Q Consensus 162 ~~~~~~wR~~~~~~~~neI~vdv~E~l~~~~~~~G~v~~~~V~G~i~~~~~LsG~p~~~l~ln~~~~~~~~~~~~~~~~~ 241 (359)
.+++++||+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..+++..+ .
T Consensus 153 ~~~~i~wr~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~------~ 226 (423)
T 1w63_M 153 VTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR------G 226 (423)
T ss_dssp ----CCSSCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC--------------
T ss_pred ccCCCCccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccc------c
Confidence 4678999999999999999999999999999999999999999999999999999999999999875543211 1
Q ss_pred CCCeEEccCcceeceecccCcCCcCeEEEeCCCCceEEEEEEecCCCCCCeEEEeEEEEeCceEEEEEEEEeecCCCcee
Q 018183 242 SGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMF 321 (359)
Q Consensus 242 ~~~~i~l~d~~fH~cV~~~~f~~~~~i~F~PPdg~F~Lm~Yr~~~~~~lP~~i~~~~~~~~~~~~~~~v~l~~~~~~~~~ 321 (359)
..+++.|+||+||||||+++|+++|+|+|+||||+|+||+||++.+..+||.+.|+++..++++++++++++++++++..
T Consensus 227 ~~~~v~l~d~~fHpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~ 306 (423)
T 1w63_M 227 KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRST 306 (423)
T ss_dssp -----CEEEEEECTTEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEETTTEEEEEEEEECCSCTTSE
T ss_pred ccCceEcccccccccccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEecCCCEEEEEEEEcccCCCcce
Confidence 34567899999999999999999999999999999999999999888899999999987777899999999999999889
Q ss_pred eeeeEEEecCCCCcceeEEEEceeeEEEeCCCCeEeeC
Q 018183 322 ALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWK 359 (359)
Q Consensus 322 ~~~v~i~iP~P~~~~~~~~~~s~G~~~y~~~~~~lvW~ 359 (359)
++||.|+||+|+++.+++++++.|+++|++++++++|+
T Consensus 307 ~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~ 344 (423)
T 1w63_M 307 ANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWS 344 (423)
T ss_dssp EESCEEEEECCTTCCCCEEEESSSEEEEETGGGEEEEE
T ss_pred eeEEEEEEeCCCCcccceEEecCccEEEecCCCEEEEE
Confidence 99999999999999999999999999999999999995
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=5.2e-54 Score=410.45 Aligned_cols=231 Identities=49% Similarity=0.889 Sum_probs=168.7
Q ss_pred cccCHHHHhhhhcccCCCCCCCCCCCCCCCCCcccccccccccccCCcccccccEEEEEEEeEeEEEcccCcEEEEEEEE
Q 018183 126 QNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTG 205 (359)
Q Consensus 126 ~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wR~~~~~~~~neI~vdv~E~l~~~~~~~G~v~~~~V~G 205 (359)
|+||+++|+++|.++++..+..... .....+.+.+++++||+.|++|++|||||||+|+|+++++++|.+++++|.|
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~~~---~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G 77 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQTKE---EQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSG 77 (314)
T ss_dssp ----------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccccc---cccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEE
Confidence 6899999999999998765322111 1112345667899999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCCCeeEEEecCccccccccccc--CCCCCCCCeEEccCcceeceecccCcCCcCeEEEeCCCCceEEEEEE
Q 018183 206 KILMKCFLSGMPDLKLGLNDKIGLEKESQLK--SRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYR 283 (359)
Q Consensus 206 ~i~~~~~LsG~p~~~l~ln~~~~~~~~~~~~--~~~~~~~~~i~l~d~~fH~cV~~~~f~~~~~i~F~PPdg~F~Lm~Yr 283 (359)
+|.|+|+|+|||+|+|+||++..++++.... ..+....+++.|+||+|||||++++|+++|+|+|+||||+|+||+||
T Consensus 78 ~I~~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr 157 (314)
T 1i31_A 78 RVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 157 (314)
T ss_dssp EEEEEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEEEEE
T ss_pred EEEEEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEEEEE
Confidence 9999999999999999999986655322100 00011135678999999999999999999999999999999999999
Q ss_pred ecCCCCCCeEEEeEEEEeCceEEEEEEEEeecCCCceeeeeeEEEecCCCCcceeEEEEceeeEEEeCCCCeEeeC
Q 018183 284 ITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWK 359 (359)
Q Consensus 284 ~~~~~~lP~~i~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~v~i~iP~P~~~~~~~~~~s~G~~~y~~~~~~lvW~ 359 (359)
++.+..+||.+.|++++.|.+++|++++++++|+.+..++||.|+||+|+++.++.++++.|+++|++++++|+|+
T Consensus 158 ~~~~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~ 233 (314)
T 1i31_A 158 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWK 233 (314)
T ss_dssp ECSSCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECCTTEEEEEEECSSSEEEEEGGGTEEEEE
T ss_pred ecCCcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEECCCCcccceEEecCceEEEecCCCEEEEE
Confidence 9988889999999999877789999999999999999999999999999999999999999999999999999995
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=1.1e-49 Score=371.61 Aligned_cols=187 Identities=47% Similarity=0.847 Sum_probs=174.4
Q ss_pred ccccCCcccccccEEEEEEEeEeEEEcccCcEEEEEEEEEEEEEEeeCCCCeeEEEecCcccccccccccCCCCCCCCeE
Q 018183 167 GWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTI 246 (359)
Q Consensus 167 ~wR~~~~~~~~neI~vdv~E~l~~~~~~~G~v~~~~V~G~i~~~~~LsG~p~~~l~ln~~~~~~~~~~~~~~~~~~~~~i 246 (359)
+||+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..+++..+ ...+++
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~------~~~~~~ 74 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR------GKSKSV 74 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTC------TTSCCB
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccc------cccCcc
Confidence 69999999999999999999999999999999999999999999999999999999999865543221 123567
Q ss_pred EccCcceeceecccCcCCcCeEEEeCCCCceEEEEEEecCCCCCCeEEEeEEEEeCceEEEEEEEEeecCCCceeeeeeE
Q 018183 247 ELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVV 326 (359)
Q Consensus 247 ~l~d~~fH~cV~~~~f~~~~~i~F~PPdg~F~Lm~Yr~~~~~~lP~~i~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~v~ 326 (359)
.++||+|||||++++|+++|+|+|+||||+|+||+||++.+..+||.+.+++++.+.++++++++++++++++..++||.
T Consensus 75 ~l~d~~fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~~nV~ 154 (266)
T 4en2_M 75 ELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVE 154 (266)
T ss_dssp CCEEEEECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEEEEEE
T ss_pred CccccccccccCHhHccccceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEEEEEE
Confidence 89999999999999999999999999999999999999988889999999998877789999999999999999999999
Q ss_pred EEecCCCCcceeEEEEceeeEEEeCCCCeEeeC
Q 018183 327 IKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWK 359 (359)
Q Consensus 327 i~iP~P~~~~~~~~~~s~G~~~y~~~~~~lvW~ 359 (359)
|+||+|+++.++.++++.|+++|++++++|+|+
T Consensus 155 I~IP~P~~~~~~~~~~~~G~~~y~~~~~~lvW~ 187 (266)
T 4en2_M 155 IHIPVPNDADSPKFKTTVGSVKWVPENSEIVWS 187 (266)
T ss_dssp EEEECCTTCEEEEEEESSSEEEEETTTTEEEEE
T ss_pred EEECCCCCcCcceEEecCceEEEeccCCEEEEE
Confidence 999999999999999999999999999999995
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=3.2e-49 Score=385.82 Aligned_cols=195 Identities=47% Similarity=0.858 Sum_probs=169.6
Q ss_pred cccc---ccCCcccccccEEEEEEEeEeEEEcccCcEEEEEEEEEEEEEEeeCCCCeeEEEecCccccccccc--ccCCC
Q 018183 165 AVGW---RREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQ--LKSRP 239 (359)
Q Consensus 165 ~~~w---R~~~~~~~~neI~vdv~E~l~~~~~~~G~v~~~~V~G~i~~~~~LsG~p~~~l~ln~~~~~~~~~~--~~~~~ 239 (359)
.+|| |+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..+++... .+..+
T Consensus 105 ~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~~~ 184 (385)
T 3ml6_A 105 PPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETS 184 (385)
T ss_dssp CCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC----------------
T ss_pred CCCchhccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCcccccccccccccccc
Confidence 3499 788999999999999999999999999999999999999999999999999999999876554321 11122
Q ss_pred CCCCCeEEccCcceeceecccCcCCcCeEEEeCCCCceEEEEEEecCCCCCCeEEEeEEEEeCceEEEEEEEEeecCCCc
Q 018183 240 TKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAK 319 (359)
Q Consensus 240 ~~~~~~i~l~d~~fH~cV~~~~f~~~~~i~F~PPdg~F~Lm~Yr~~~~~~lP~~i~~~~~~~~~~~~~~~v~l~~~~~~~ 319 (359)
...+.++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+..+||.+.|++++.|.++++++++++++|+++
T Consensus 185 ~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~~~~vei~v~lk~~f~~~ 264 (385)
T 3ml6_A 185 KSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPS 264 (385)
T ss_dssp ------CCCCEEEECTTBCCCCSSSCSEEEECCCSEEEEEEEEEECSSCCCSEEEEEEEEEETTTEEEEEEEEEECSCTT
T ss_pred ccccCceEccccccccccChhHccccceEEEeCCCCceEEEEEEcCCCCCCCEEEEEEEEeCCCeEEEEEEEEeecCCCc
Confidence 22345688999999999999999999999999999999999999998888999999999988889999999999999999
Q ss_pred eeeeeeEEEecCCCCcceeEEEEceeeEEEeCCCCeEeeC
Q 018183 320 MFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWK 359 (359)
Q Consensus 320 ~~~~~v~i~iP~P~~~~~~~~~~s~G~~~y~~~~~~lvW~ 359 (359)
+.++||.|+||+|+++.+++++++.|+++|++++++|+|+
T Consensus 265 ~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~lvW~ 304 (385)
T 3ml6_A 265 LLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWK 304 (385)
T ss_dssp CCEEEEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEE
T ss_pred ceEEEEEEEecCCCCcccceEEecCceEEEeccCcEEEEE
Confidence 9999999999999999999999999999999999999995
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=4e-47 Score=359.95 Aligned_cols=186 Identities=32% Similarity=0.639 Sum_probs=159.3
Q ss_pred ccccccCCcccccccEEEEEEEeEeEEEcccCcEEEEEEEEEEEEEEeeCCCCeeEEEecCcccccccccccCCCCCCCC
Q 018183 165 AVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGK 244 (359)
Q Consensus 165 ~~~wR~~~~~~~~neI~vdv~E~l~~~~~~~G~v~~~~V~G~i~~~~~LsG~p~~~l~ln~~~~~~~~~~~~~~~~~~~~ 244 (359)
..+||+. +|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..+++..+ .....
T Consensus 22 v~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~-----~~~~~ 94 (301)
T 3l81_A 22 VLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSEL-----RGYGP 94 (301)
T ss_dssp -------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTT-----TCCCS
T ss_pred ccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEccccccccccc-----ccccC
Confidence 3499986 7999999999999999999999999999999999999999999999999999876654321 11245
Q ss_pred eEEccCcceeceecccCcCCcCeEEEeCCCCceEEEEEEecCCC--CCCeEEEeEEEEeCc-eEEEEEEEEeecCCCcee
Q 018183 245 TIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGV--NLPFRVLPTIKELGR-TRMEVNVKIKSVFGAKMF 321 (359)
Q Consensus 245 ~i~l~d~~fH~cV~~~~f~~~~~i~F~PPdg~F~Lm~Yr~~~~~--~lP~~i~~~~~~~~~-~~~~~~v~l~~~~~~~~~ 321 (359)
++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+. .+||.+.|+++..+. ++++++++++++|+.+..
T Consensus 95 ~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~v~~~v~~~~~~~~ie~~l~l~~~f~~~~~ 174 (301)
T 3l81_A 95 GIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQ 174 (301)
T ss_dssp SSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSEEEEEEEEECTTTSEEEEEEEEEECSCTTCE
T ss_pred ceEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCEEEEEEEEECCCcEEEEEEEEEecCCCCCcE
Confidence 67899999999999999999999999999999999999998654 799999999998754 799999999999999999
Q ss_pred eeeeEEEecCCCCcceeE--EEEceeeEEEeCCCCeEeeC
Q 018183 322 ALGVVIKIPVPKQTAKTS--FQVTSGRAKYNASIDCLVWK 359 (359)
Q Consensus 322 ~~~v~i~iP~P~~~~~~~--~~~s~G~~~y~~~~~~lvW~ 359 (359)
++||.|+||+|+++.+++ ++++.|+++| ++++|+|+
T Consensus 175 ~~nV~I~IPvP~~~~~~~~~~~~~~G~~~y--~~~~lvW~ 212 (301)
T 3l81_A 175 ALNVRLHLPLPRGVVSLSQELSSPEQKAEL--AEGALRWD 212 (301)
T ss_dssp EEEEEEEEECCTTCEEEEEEESSTTCEEEE--ETTEEEEE
T ss_pred EEEEEEEEcCCCCcccceEEEeecCceEEE--eCcEEEEE
Confidence 999999999999999888 5577899999 99999995
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=7.7e-33 Score=238.84 Aligned_cols=137 Identities=20% Similarity=0.304 Sum_probs=126.2
Q ss_pred eeEEEEEEcCCCCEEEEEcccCCCCC---chHHHHHHHhhcccCCCCCCeEEeCCEEEEEEEeCcEEEEEEEcCCcCHHH
Q 018183 4 AASAIYFLNLRGDVLINRLYRDDVGG---NMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVAC 80 (359)
Q Consensus 4 mI~~~~Iln~~G~~li~r~yr~~~~~---~~~~~f~~~v~~~~~~~~~p~~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~ 80 (359)
||+|+||+|++|+++++|||+++..+ ...+.|.+.+... +...+|++++++++|+|+++++|||+++++.++||++
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~ 79 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLAR-KPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELI 79 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTS-CSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhcc-CCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 89999999999999999999988654 4567888877653 3346899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHhhHHHHHHHHHHHHcCCcccccCHHHHhhhhcccCC
Q 018183 81 AFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGV 142 (359)
Q Consensus 81 ~~e~L~~~~~~l~~~~~~~l~e~~i~~n~~~v~~llDEiid~G~p~~t~~~~l~~~i~~~~~ 142 (359)
++++||+++++|++||| +++|.+|++||+.+|++||||+|+|+||+|++++|+.+|.+++.
T Consensus 80 ~le~L~~~vevl~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~ 140 (158)
T 1w63_Q 80 TLELIHRYVELLDKYFG-SVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADL 140 (158)
T ss_dssp HHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-cCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchh
Confidence 99999999999999999 89999999999999999999999999999999999999987653
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.98 E-value=2.4e-32 Score=231.88 Aligned_cols=136 Identities=18% Similarity=0.272 Sum_probs=123.2
Q ss_pred eeEEEEEEcCCCCEEEEEcccCC---CCCchHHHHHHHhhcccCCCCCCeEEeCCEEEEEEEeCcEEEEEEEcCCcCHHH
Q 018183 4 AASAIYFLNLRGDVLINRLYRDD---VGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVAC 80 (359)
Q Consensus 4 mI~~~~Iln~~G~~li~r~yr~~---~~~~~~~~f~~~v~~~~~~~~~p~~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~ 80 (359)
||+|++|+|++|+++++|||++. .+++..+.|.+++... ....+|+++.++++|+|+++++|||+++++.++||++
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~-~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~ 79 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVR-DAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLA 79 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTC-CTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcC-CCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHH
Confidence 89999999999999999999953 2345778999998853 3347899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHhhHHHHHHHHHHHHcCCcccccC-HHHHhhhhcccC
Q 018183 81 AFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLS-PEILKLYITQEG 141 (359)
Q Consensus 81 ~~e~L~~~~~~l~~~~~~~l~e~~i~~n~~~v~~llDEiid~G~p~~t~-~~~l~~~i~~~~ 141 (359)
++++||+++++|++||| +++|.+|++||+.+|++||||+|+|+||+|+ .+.|+.++.++.
T Consensus 80 ~le~L~~~ve~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~ 140 (142)
T 2vgl_S 80 YLEAIHNFVEVLNEYFH-NVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQS 140 (142)
T ss_dssp HHHHHHHHHHHHHHHTT-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhc
Confidence 99999999999999999 8999999999999999999999999999995 667888887653
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.97 E-value=4e-31 Score=226.37 Aligned_cols=135 Identities=17% Similarity=0.250 Sum_probs=116.5
Q ss_pred ceeEEEEEEcCCCCEEEEEcccCCCC----CchHH-HHHHHhhcccCCCCCCeEEeCCEEEEEEEeCcEEEEEEEcCCcC
Q 018183 3 VAASAIYFLNLRGDVLINRLYRDDVG----GNMVD-AFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNAN 77 (359)
Q Consensus 3 ~mI~~~~Iln~~G~~li~r~yr~~~~----~~~~~-~f~~~v~~~~~~~~~p~~~~~~~~~v~~~~~~l~~v~~~~~~~n 77 (359)
.||+|++|+|++|+++++|||+++.. +...+ .+.+.+. + .++|++.+++++++|+++++|||+++++.++|
T Consensus 11 ~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~--r--~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eN 86 (153)
T 3tjz_C 11 YTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH--R--TDSEIALLEGLTVVYKSSIDLYFYVIGSSYEN 86 (153)
T ss_dssp BCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS--S--CCCCEEEETTEEEEEEECSSCEEEEEEETTSC
T ss_pred HHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh--C--CCCCEEEECCEEEEEEEECCEEEEEEEcCCCC
Confidence 49999999999999999999998642 22222 3444442 2 24799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhHHHHHHHHHHHHcCCcccccCHHHHhhhhcccC
Q 018183 78 VACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEG 141 (359)
Q Consensus 78 ~~~~~e~L~~~~~~l~~~~~~~l~e~~i~~n~~~v~~llDEiid~G~p~~t~~~~l~~~i~~~~ 141 (359)
|++++++||+++++|++||+++++|.+|++||+.+|++||||+|+|+||+|+++.|..++.+++
T Consensus 87 el~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 87 ELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 9999999999999999999339999999999999999999999999999999999999998654
No 10
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=98.29 E-value=5.7e-05 Score=70.96 Aligned_cols=156 Identities=15% Similarity=0.282 Sum_probs=100.5
Q ss_pred cccEEEEEEEeEeEEEcccCcEEEEEEEEEEEEEEeeCC-------CCeeEEEecCcccccccccccCCCCCCCCeEEcc
Q 018183 177 KNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSG-------MPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELD 249 (359)
Q Consensus 177 ~neI~vdv~E~l~~~~~~~G~v~~~~V~G~i~~~~~LsG-------~p~~~l~ln~~~~~~~~~~~~~~~~~~~~~i~l~ 249 (359)
.-.+-.-|.|.|||.+.. |.+.++.|.|+|.+. |..| .+.+.+.|++-..+.+- +-
T Consensus 67 ~pGLnASI~E~VNA~Fkg-g~~tk~~v~GEiaLs-y~~~~~s~~p~p~~l~fRL~N~~~Lekv---------------~p 129 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFKD-GMLQNSQLIGEIALN-YLPNSVMNSPLPIGINLRINNGAKFEKV---------------IL 129 (328)
T ss_dssp CCEEEEEEEEEEEEEEET-TEEEEEEEEEEEEEE-EECCSSSCCCCCSEEEEEEETGGGEEEE---------------EE
T ss_pred CCceeEEEEEEEEEEEEC-CcEEEEEEEEEEEEe-cCCCccccCCCCccEEEEecCcchhhee---------------eC
Confidence 447888999999999964 678999999998875 3444 24577777653322211 01
Q ss_pred CcceeceecccCcCCcCeEEEeCC---CCceEEEEEEecCCCCCCeEEEeEEEE-eCceEEEEEEEEeecCCC---ceee
Q 018183 250 DVTFHQCVNLTRFNSEKTVSFVPP---DGEFELMKYRITEGVNLPFRVLPTIKE-LGRTRMEVNVKIKSVFGA---KMFA 322 (359)
Q Consensus 250 d~~fH~cV~~~~f~~~~~i~F~PP---dg~F~Lm~Yr~~~~~~lP~~i~~~~~~-~~~~~~~~~v~l~~~~~~---~~~~ 322 (359)
+-+|-.++.-.. -.|-++ ...-.+++|+++. ...|+.+.+..+- .....+-+.+++.+.++. ...+
T Consensus 130 N~~fv~~~~~~e------F~vn~~~L~sktv~~lKYqVs~-~~~PL~l~p~WK~E~~qtsliI~Yk~NP~~~~~~~~~~L 202 (328)
T 3g9h_A 130 NQAFIERVAPEE------FKVNPSFIDSRTLGAIKYSIKE-PIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEISQIVI 202 (328)
T ss_dssp CTTTEEEEETTE------EEECTTTTBTCEEEEEEEEEES-CCCSEEEEEEEEECSSEEEEEEEEEECTTSCTTCCEEEE
T ss_pred CHHHhccCCCCC------EEEchHHhcccceeeEEEEECC-CCCCeEEEeeeecCCCeeEEEEEEEECCCCcCcCCCcee
Confidence 111112221111 111111 1235689999975 7789999988764 344555666666666665 6789
Q ss_pred eeeEEEecCCC-CcceeEEEEceeeEEEeCCCCeEeeC
Q 018183 323 LGVVIKIPVPK-QTAKTSFQVTSGRAKYNASIDCLVWK 359 (359)
Q Consensus 323 ~~v~i~iP~P~-~~~~~~~~~s~G~~~y~~~~~~lvW~ 359 (359)
+||++.+|+.. .+.++..++ .+.|..+++.+.|+
T Consensus 203 ~Nv~~~V~ldGa~ats~qskP---~gtwn~e~~ri~Wk 237 (328)
T 3g9h_A 203 EDLVVFVNIDGANATSALSKP---QGSFSKEKKRITWR 237 (328)
T ss_dssp EEEEEEEEBCSSCEEEEEESS---SCCBCSSSCEEEEE
T ss_pred eeEEEEEEeCCCceeEEEecC---CceeccccCEEEEE
Confidence 99999999976 344444443 56788999999996
No 11
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.32 Score=42.91 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.5
Q ss_pred ceeEEEEEEcCCCCEEEEEcccCCCC
Q 018183 3 VAASAIYFLNLRGDVLINRLYRDDVG 28 (359)
Q Consensus 3 ~mI~~~~Iln~~G~~li~r~yr~~~~ 28 (359)
|+|.+++|+|+.|..|++|.|.++.+
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~~~ 26 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTNDEQ 26 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCCC
T ss_pred CeeEEEEEEeCCCCEEeehhhccCcC
Confidence 89999999999999999999986543
No 12
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=94.82 E-value=0.22 Score=43.13 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=60.1
Q ss_pred eEEEEEEcCCCCEEEEEcccCCCCCchHHHHHHHhhcc-cCCCCCCeEEeCCEEEEEEEeCcEEEEEEEcCCcCHHHHHH
Q 018183 5 ASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQT-KELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFK 83 (359)
Q Consensus 5 I~~~~Iln~~G~~li~r~yr~~~~~~~~~~f~~~v~~~-~~~~~~p~~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~e 83 (359)
|-..+|- +|.++++.+ ... +.+. ..+-++++.. +....--.+..+++.|.|...+++.++|+++.+-+--.++.
T Consensus 4 ilYa~VA--rg~~iLae~-t~~-~gnf-~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~ 78 (189)
T 4b93_A 4 ILFAVVA--RGTTILAKH-AWC-GGNF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFS 78 (189)
T ss_dssp EEEEEEE--ETTEEEEEE-ESS-EECH-HHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHH
T ss_pred eEEEEEE--eCCEEEEeC-CCC-CCCH-HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHH
Confidence 4444453 689999875 222 2332 2333333332 11111124688999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 018183 84 FVVEAVALFKSYFG 97 (359)
Q Consensus 84 ~L~~~~~~l~~~~~ 97 (359)
||..+.+-+..-++
T Consensus 79 fL~~i~~eF~~~~~ 92 (189)
T 4b93_A 79 FLNEVKKRFQTTYG 92 (189)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhhcc
Confidence 99999987776665
No 13
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=94.46 E-value=0.6 Score=38.45 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=64.7
Q ss_pred CcceeEEEEEEcCCC--CEEEEEcccC----CCCCchHHHH----HHHhhcccCCCCCCeEEeCCEEEEEE-EeCcEEEE
Q 018183 1 MPVAASAIYFLNLRG--DVLINRLYRD----DVGGNMVDAF----RTHIMQTKELGTCPVRQIGGCSFFYM-RISNVYIV 69 (359)
Q Consensus 1 ~~~mI~~~~Iln~~G--~~li~r~yr~----~~~~~~~~~f----~~~v~~~~~~~~~p~~~~~~~~~v~~-~~~~l~~v 69 (359)
|.|-|.++.|+-..+ -++++..+.- ..+|+...+| -+.+..+....+---++.+++.+.|. +.+++.++
T Consensus 3 ~~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 3 MAMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEE
T ss_pred cEEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEE
Confidence 678888888875432 4556655531 1245555544 33343322111112467788888887 77999999
Q ss_pred EEEcCCcCHHHHHHHHHHHHHHHHhhcC
Q 018183 70 IVVSSNANVACAFKFVVEAVALFKSYFG 97 (359)
Q Consensus 70 ~~~~~~~n~~~~~e~L~~~~~~l~~~~~ 97 (359)
|+++.+-+--.++.||+.+.+-+..-++
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999998887665555
No 14
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=94.32 E-value=0.19 Score=41.65 Aligned_cols=92 Identities=11% Similarity=0.179 Sum_probs=58.7
Q ss_pred ceeEEEEEEcCCCCEEEEEcccCCCC-C----c----------hHHHHHHHhhcccCCCCCCeEEeCCE-EEEEEEeCcE
Q 018183 3 VAASAIYFLNLRGDVLINRLYRDDVG-G----N----------MVDAFRTHIMQTKELGTCPVRQIGGC-SFFYMRISNV 66 (359)
Q Consensus 3 ~mI~~~~Iln~~G~~li~r~yr~~~~-~----~----------~~~~f~~~v~~~~~~~~~p~~~~~~~-~~v~~~~~~l 66 (359)
|||.+++|+|++|.+|..|.|....+ + + .+..+.+++........--.+..+++ .++|....++
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 88999999999999999999954311 1 1 12344444432111111123455665 4677888999
Q ss_pred EEEEEEcCCcCHHHHHHHHHHHH-HHHHhhc
Q 018183 67 YIVIVVSSNANVACAFKFVVEAV-ALFKSYF 96 (359)
Q Consensus 67 ~~v~~~~~~~n~~~~~e~L~~~~-~~l~~~~ 96 (359)
-|+++++..++. +-++|+++. ++.-+|.
T Consensus 81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~v 109 (145)
T 2j3t_C 81 KVVMNTDLGVGP--IRDVLHHIYSALYVEFV 109 (145)
T ss_dssp EEEEEECTTCCC--CHHHHHHHHHTTHHHHT
T ss_pred EEEEEecCCcch--HHHHHHHHHHHHHHHHH
Confidence 999999876544 446788888 5666644
No 15
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=93.43 E-value=0.84 Score=38.88 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=62.0
Q ss_pred ceeEEEEEEcCCCCEEEEEcccCCCCCchHHHHHHHhhcccCC-CCCCeEEeCCEEEEEEEeCcEEEEEEEcCCcCHHHH
Q 018183 3 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKEL-GTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACA 81 (359)
Q Consensus 3 ~mI~~~~Iln~~G~~li~r~yr~~~~~~~~~~f~~~v~~~~~~-~~~p~~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~ 81 (359)
|.|-..+|. +|.++|+.+=.. ..+. +.+-+.+..+-.. ...-.++.+++.|.|...+++.++|+++.+-.--.+
T Consensus 54 M~I~Ya~VA--rg~tiLAE~t~~--~gnf-~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~a 128 (173)
T 4afi_A 54 MAILFAVVA--RGTTILAKHAWC--GGNF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRA 128 (173)
T ss_dssp CCEEEEEEE--ETTEEEEEEESS--CCCH-HHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHH
T ss_pred ccEEEEEEE--CCCEEEEEccCC--CCCH-HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHH
Confidence 345555554 588998866322 2332 3344444432211 111246789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 018183 82 FKFVVEAVALFKSYFG 97 (359)
Q Consensus 82 ~e~L~~~~~~l~~~~~ 97 (359)
+.||.++.+-+..-++
T Consensus 129 F~FLedI~~eF~~~yg 144 (173)
T 4afi_A 129 FSFLNEVKKRFQTTYG 144 (173)
T ss_dssp HHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999988776665
No 16
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=91.83 E-value=1.5 Score=37.82 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=42.3
Q ss_pred eEEeCCEEEEEEEeCcEEEEEEEcCCcCHHHHHHHHHHHHHHHHhhcC
Q 018183 50 VRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFG 97 (359)
Q Consensus 50 ~~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~e~L~~~~~~l~~~~~ 97 (359)
.+..+++.|.|...+++.++|+++.+-+.-.++.||..+.+-+..-++
T Consensus 54 s~~~~~y~fhy~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~~ 101 (196)
T 2nut_C 54 TLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHG 101 (196)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCEEEEEEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhcc
Confidence 467899999999999999999999999999999999999987776555
No 17
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=91.66 E-value=1.8 Score=36.69 Aligned_cols=90 Identities=18% Similarity=0.263 Sum_probs=59.5
Q ss_pred ceeEEEEEEcCCCCEEEEEcccCCCCCchHHHHHHHhhcccCC-CCCCeEEeCCEEEEEEEeCcEEEEEEEcCCcCHHHH
Q 018183 3 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKEL-GTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACA 81 (359)
Q Consensus 3 ~mI~~~~Iln~~G~~li~r~yr~~~~~~~~~~f~~~v~~~~~~-~~~p~~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~ 81 (359)
|-|-..+| . +|.++|+.+ .+. ..+ ....-+.++.+-.. ...-.++.+++.|-|...+++.++|+++.+-.-..+
T Consensus 44 M~ilYa~V-a-RG~~VLae~-t~~-~gn-f~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~A 118 (169)
T 2vx8_A 44 MAILFAVV-A-RGTTILAKH-AWC-GGN-FLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRA 118 (169)
T ss_dssp SCCCEEEE-E-ETTEEEEEE-ESS-CBS-HHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHH
T ss_pred CceEEEEE-E-cCCEEEEEe-ccC-CCC-HHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHH
Confidence 33444444 3 466777764 322 222 33333444432211 112246789999999889999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 018183 82 FKFVVEAVALFKSYFG 97 (359)
Q Consensus 82 ~e~L~~~~~~l~~~~~ 97 (359)
+.||.++.+-+..-++
T Consensus 119 F~fLedI~~eF~~~y~ 134 (169)
T 2vx8_A 119 FSFLNEVKKRFQTTYG 134 (169)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998877666
No 18
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=91.24 E-value=0.27 Score=41.43 Aligned_cols=90 Identities=7% Similarity=0.177 Sum_probs=54.7
Q ss_pred ceeEEEEEEcCCCCEEEEEcccCC-------CC-Cc-------------hHHHHHHHhhcccCCCCCCe--EEeCCE-EE
Q 018183 3 VAASAIYFLNLRGDVLINRLYRDD-------VG-GN-------------MVDAFRTHIMQTKELGTCPV--RQIGGC-SF 58 (359)
Q Consensus 3 ~mI~~~~Iln~~G~~li~r~yr~~-------~~-~~-------------~~~~f~~~v~~~~~~~~~p~--~~~~~~-~~ 58 (359)
|+|.+++|+|++|..|..|.|... .. +. .+..|.+++... ....-+ +..+.+ .+
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~--~~~~~f~~~~T~~ykl~ 78 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKG--SVKNDIRSISTGKYRVH 78 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCS--SSCCCEEEEECSSCBEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCC--CCCCCeEEEeeCCEEEE
Confidence 889999999999999999998531 11 11 022333333211 111122 334444 46
Q ss_pred EEEEeCcEEEEEEEcCCcCHHHHHHHHHHHHH-HHHhhc
Q 018183 59 FYMRISNVYIVIVVSSNANVACAFKFVVEAVA-LFKSYF 96 (359)
Q Consensus 59 v~~~~~~l~~v~~~~~~~n~~~~~e~L~~~~~-~l~~~~ 96 (359)
.|..-.++-||++++..++.+ -++|+++.+ +.-+|.
T Consensus 79 ~~eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~yv 115 (159)
T 3cue_C 79 TYCTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKYV 115 (159)
T ss_dssp EECCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHHH
Confidence 777888999999998765443 356777776 666654
No 19
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=90.47 E-value=2.6 Score=34.44 Aligned_cols=91 Identities=3% Similarity=0.054 Sum_probs=55.6
Q ss_pred ce-eEEEEEEcCCCCEEEEEcccCCCCCc----h-----------HHHHHHHhhcccCCCCCCeEE---eCCE-EEEEEE
Q 018183 3 VA-ASAIYFLNLRGDVLINRLYRDDVGGN----M-----------VDAFRTHIMQTKELGTCPVRQ---IGGC-SFFYMR 62 (359)
Q Consensus 3 ~m-I~~~~Iln~~G~~li~r~yr~~~~~~----~-----------~~~f~~~v~~~~~~~~~p~~~---~~~~-~~v~~~ 62 (359)
|+ |.+++|+|++|++|..|.|....... . ++.+.+.. +.....-... ++++ .+.|..
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~---~~~~~~~l~~~~~~~~y~v~~~~T 79 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENM---WLSNNMYLKTVDKFNEWFVSAFVT 79 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHG---GGCSCSEEEEEEEETTEEEEEEEC
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhc---CCCCcceeEeeecccceEEEEEEc
Confidence 77 89999999999999999996542210 0 11111111 1111111222 3333 477788
Q ss_pred eCcEEEEEEEcCCcCHHHHHHHHHHHHHHHHhhcC
Q 018183 63 ISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFG 97 (359)
Q Consensus 63 ~~~l~~v~~~~~~~n~~~~~e~L~~~~~~l~~~~~ 97 (359)
..++-|+++++.. +..-+-++|+++.++.-+|.-
T Consensus 80 ~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~ 113 (142)
T 2j3w_A 80 AGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAM 113 (142)
T ss_dssp TTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhc
Confidence 8899999999763 344566777777776666553
No 20
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=90.05 E-value=2.7 Score=34.42 Aligned_cols=91 Identities=14% Similarity=0.097 Sum_probs=64.2
Q ss_pred eEEEEEEcCCCCEEEEEcccCCCC---C-chHHHHHHHhhccc---CCCCCC-eEEeCCEEEEEEEeCcEEEEEEEcCCc
Q 018183 5 ASAIYFLNLRGDVLINRLYRDDVG---G-NMVDAFRTHIMQTK---ELGTCP-VRQIGGCSFFYMRISNVYIVIVVSSNA 76 (359)
Q Consensus 5 I~~~~Iln~~G~~li~r~yr~~~~---~-~~~~~f~~~v~~~~---~~~~~p-~~~~~~~~~v~~~~~~l~~v~~~~~~~ 76 (359)
+.+|+|-|++|=+++.-....... | +.+..|....-+.. -..+.. +-.++++.++......+++..++.++.
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a 117 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA 117 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence 689999999999999988654321 1 23344444333211 111233 446788889888999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 018183 77 NVACAFKFVVEAVALFKSY 95 (359)
Q Consensus 77 n~~~~~e~L~~~~~~l~~~ 95 (359)
|.-.++.+=+.+..+|.+.
T Consensus 118 NtG~Il~Le~~L~p~l~~L 136 (143)
T 3cpt_A 118 NTGLIVSLEKELAPLFEEL 136 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CchhHhhhHHHHHHHHHHH
Confidence 9998888877777777654
No 21
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=87.76 E-value=4.4 Score=34.72 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=62.2
Q ss_pred ceeEEEEEEcCCCCEEEEEcccCCCCCchHHHHHHHhhcccCCCCCCeEEeCCEEEEEEEeC--cEEEEEEEcCCcCHHH
Q 018183 3 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRIS--NVYIVIVVSSNANVAC 80 (359)
Q Consensus 3 ~mI~~~~Iln~~G~~li~r~yr~~~~~~~~~~f~~~v~~~~~~~~~p~~~~~~~~~v~~~~~--~l~~v~~~~~~~n~~~ 80 (359)
.|+..+.|+++.|=+|-+..--.....+.+..+.+.++-. ++...+.+..++++.-|...| +|.||++-..--+...
T Consensus 9 ~~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLE-ER~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Y 87 (185)
T 2fh5_A 9 SMVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQ-ERGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTY 87 (185)
T ss_dssp CSCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGG-C-------CCCCCEEEEEEETTTTEEEEEEESCGGGHHH
T ss_pred cceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhc-cccCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchH
Confidence 5889999999988888773211112245666666666542 333345678899887776555 4899999888777777
Q ss_pred HHHHHHHHHHHHHhhcC
Q 018183 81 AFKFVVEAVALFKSYFG 97 (359)
Q Consensus 81 ~~e~L~~~~~~l~~~~~ 97 (359)
+=+||..+...+.+.++
T Consensus 88 iD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 88 VDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77888888777776664
No 22
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=84.86 E-value=7.1 Score=33.80 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=62.1
Q ss_pred ceeEEEEEEcCCCC-E-EEEEccc-C---CCCCchHHHHH----HHhhcccCCCCCCeEEeCCEEEE-EEEeCcEEEEEE
Q 018183 3 VAASAIYFLNLRGD-V-LINRLYR-D---DVGGNMVDAFR----THIMQTKELGTCPVRQIGGCSFF-YMRISNVYIVIV 71 (359)
Q Consensus 3 ~mI~~~~Iln~~G~-~-li~r~yr-~---~~~~~~~~~f~----~~v~~~~~~~~~p~~~~~~~~~v-~~~~~~l~~v~~ 71 (359)
|=|-++.|+-..|+ + ++...|. + ..+|....+|. +.+.........-.++.+++.|. |...+++.++|+
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~i 81 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVI 81 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEE
Confidence 44778888876554 3 3455543 1 12344443332 33433221111124677888887 888899999999
Q ss_pred EcCCcCHHHHHHHHHHHHHHHHhhcC
Q 018183 72 VSSNANVACAFKFVVEAVALFKSYFG 97 (359)
Q Consensus 72 ~~~~~n~~~~~e~L~~~~~~l~~~~~ 97 (359)
++.+-+--.++.||..+.+-+..-++
T Consensus 82 td~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 82 ADSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999987776665
No 23
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=79.85 E-value=4.8 Score=32.90 Aligned_cols=71 Identities=10% Similarity=0.221 Sum_probs=45.8
Q ss_pred eeEEEEEEcCCCCEEEEEcccC-CCCCchHHHHHHHhhcccC------CC------CCCeEEe-------CCEEEEEE--
Q 018183 4 AASAIYFLNLRGDVLINRLYRD-DVGGNMVDAFRTHIMQTKE------LG------TCPVRQI-------GGCSFFYM-- 61 (359)
Q Consensus 4 mI~~~~Iln~~G~~li~r~yr~-~~~~~~~~~f~~~v~~~~~------~~------~~p~~~~-------~~~~~v~~-- 61 (359)
||.++.|...+|++|+.-.--+ ......+-.|..+++..+- .+ .-+++.+ +++.+.|+
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 8999999999999998644211 1122356688888776432 11 2345666 77777774
Q ss_pred EeCcEEEEEEEcC
Q 018183 62 RISNVYIVIVVSS 74 (359)
Q Consensus 62 ~~~~l~~v~~~~~ 74 (359)
+...||||++-..
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 6678999988743
No 24
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=31.26 E-value=1.9e+02 Score=22.57 Aligned_cols=91 Identities=10% Similarity=0.090 Sum_probs=58.0
Q ss_pred eEEEEEEcCCCCEEEEEcccCCCCCch----HHHHHHHhhcc-c-----CCCCCCeEEeCCEEEEEEEeCcEEEEEEEcC
Q 018183 5 ASAIYFLNLRGDVLINRLYRDDVGGNM----VDAFRTHIMQT-K-----ELGTCPVRQIGGCSFFYMRISNVYIVIVVSS 74 (359)
Q Consensus 5 I~~~~Iln~~G~~li~r~yr~~~~~~~----~~~f~~~v~~~-~-----~~~~~p~~~~~~~~~v~~~~~~l~~v~~~~~ 74 (359)
+.+.++++.+|-++.+.....+ .... ...++...... . ..-+..+++.++-.++.....+.+++++++.
T Consensus 19 v~~a~lvs~DGllia~s~~~~~-dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~~ 97 (125)
T 1vet_B 19 VQSTLLLNNEGSLLAYSGYGDT-DARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAKE 97 (125)
T ss_dssp EEEEEEECTTCCEEEEEECCSS-CHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEECT
T ss_pred ceEEEEECCCCCeEEecCCCCc-cHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeCC
Confidence 6788999999999998766322 2122 22333222111 0 1112346677665555555588999999999
Q ss_pred CcCHHHHHHHHHHHHHHHHhhc
Q 018183 75 NANVACAFKFVVEAVALFKSYF 96 (359)
Q Consensus 75 ~~n~~~~~e~L~~~~~~l~~~~ 96 (359)
+++.-++..-++++++.|..=+
T Consensus 98 ~a~lGlv~~~m~~lv~~L~~~l 119 (125)
T 1vet_B 98 TVGFGMLKAKAQALVQYLEEPL 119 (125)
T ss_dssp TSCHHHHHHHHHHHHHHHHCC-
T ss_pred CCChHHHHHHHHHHHHHHhhhh
Confidence 9999888888888887666533
No 25
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=30.54 E-value=1.1e+02 Score=24.38 Aligned_cols=44 Identities=16% Similarity=0.442 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHH-HHHhhHHHHHHHHHHHHcCCccc
Q 018183 81 AFKFVVEAVALFKSYFGGAFDED-AIRNNFVLIYELLDEIMDFGYPQ 126 (359)
Q Consensus 81 ~~e~L~~~~~~l~~~~~~~l~e~-~i~~n~~~v~~llDEiid~G~p~ 126 (359)
-++++.+|+..+.+ ...-++. .-+.+|..|.+++.+|=+.|.|=
T Consensus 64 Q~~lv~~I~~~fE~--~~~~D~~~~~~~~~~~i~~Lmq~mQ~~G~PP 108 (126)
T 2wl8_A 64 QHSVMCKICEQFEA--ETPTDSETTQKARFEMVLDLMQQLQDLGHPP 108 (126)
T ss_dssp HHHHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHcC--CCCCchhhhHHHHHHHHHHHHHHHHHcCCCc
Confidence 34566666666665 2112233 33578899999999999999873
No 26
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=26.35 E-value=48 Score=28.99 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.5
Q ss_pred ceeEEEEEEcCCCCEEEEEccc
Q 018183 3 VAASAIYFLNLRGDVLINRLYR 24 (359)
Q Consensus 3 ~mI~~~~Iln~~G~~li~r~yr 24 (359)
|.|.++||+|+.|+.+..+.|.
T Consensus 1 m~iy~~yi~~~~~~liy~~~~~ 22 (219)
T 2j3t_D 1 MAIFSVYVVNKAGGLIYQLDSY 22 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECC
T ss_pred CeEEEEEEEecCCceEEecccC
Confidence 7899999999999999998776
No 27
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=26.31 E-value=99 Score=26.99 Aligned_cols=84 Identities=8% Similarity=0.112 Sum_probs=54.1
Q ss_pred EEcCCCCEEEEEcccCCCCCc----------hHHHHHHHhhcccCCCCCCeEEeCCEE-EEEEEeCcEEEEEEEcCCcCH
Q 018183 10 FLNLRGDVLINRLYRDDVGGN----------MVDAFRTHIMQTKELGTCPVRQIGGCS-FFYMRISNVYIVIVVSSNANV 78 (359)
Q Consensus 10 Iln~~G~~li~r~yr~~~~~~----------~~~~f~~~v~~~~~~~~~p~~~~~~~~-~v~~~~~~l~~v~~~~~~~n~ 78 (359)
|.+++..+|.-|.|.+..+.+ .++.|..++........-..++.+.++ +.|....++-|+++++..++.
T Consensus 86 iigk~N~PLyir~f~~~l~sn~~L~lag~lhSLd~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~~~ 165 (219)
T 2j3t_D 86 LGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAG 165 (219)
T ss_dssp TTCGGGCSEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTCCC
T ss_pred eecCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCchH
Confidence 446677889999998753321 145555555332111122456677765 777888999999999875433
Q ss_pred HHHHHHHHHHHHHHHhh
Q 018183 79 ACAFKFVVEAVALFKSY 95 (359)
Q Consensus 79 ~~~~e~L~~~~~~l~~~ 95 (359)
+-++|+++.++.-+|
T Consensus 166 --ir~~l~~IyelYvd~ 180 (219)
T 2j3t_D 166 --IDSLLRKIYEIYSDF 180 (219)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH
Confidence 456788888877777
Done!