Query 018184
Match_columns 359
No_of_seqs 156 out of 764
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:51:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1724 SCF ubiquitin ligase, 100.0 2.7E-42 5.8E-47 309.0 15.2 146 13-160 2-156 (162)
2 COG5201 SKP1 SCF ubiquitin lig 100.0 5.8E-36 1.2E-40 259.0 12.9 141 16-160 2-151 (158)
3 smart00512 Skp1 Found in Skp1 99.9 4.2E-25 9E-30 182.7 10.8 100 16-116 2-104 (104)
4 PF01466 Skp1: Skp1 family, di 99.9 6.2E-23 1.3E-27 163.0 4.8 72 89-160 1-72 (78)
5 PF03931 Skp1_POZ: Skp1 family 99.7 1.6E-16 3.5E-21 121.0 5.9 60 17-80 2-61 (62)
6 KOG3473 RNA polymerase II tran 99.4 5.1E-13 1.1E-17 111.5 7.2 98 13-116 14-112 (112)
7 PF00651 BTB: BTB/POZ domain; 97.9 5E-05 1.1E-09 61.2 8.0 99 15-129 10-109 (111)
8 PHA02713 hypothetical protein; 97.7 0.00018 3.9E-09 75.7 9.8 106 15-140 25-132 (557)
9 smart00225 BTB Broad-Complex, 97.3 0.0008 1.7E-08 50.6 5.9 85 22-124 5-90 (90)
10 PHA03098 kelch-like protein; P 97.1 0.0027 5.8E-08 65.4 10.0 99 15-135 9-109 (534)
11 PHA02790 Kelch-like protein; P 96.9 0.0022 4.7E-08 66.2 6.6 98 17-132 22-121 (480)
12 KOG4441 Proteins containing BT 96.4 0.0092 2E-07 63.5 7.6 95 16-129 37-132 (571)
13 KOG2716 Polymerase delta-inter 88.6 2.1 4.6E-05 41.2 8.1 103 15-134 4-108 (230)
14 KOG3433 Protein involved in me 82.1 1.4 3.1E-05 41.3 3.4 38 108-150 161-200 (203)
15 COG5124 Protein predicted to b 80.2 1.3 2.8E-05 41.5 2.4 31 115-150 174-204 (209)
16 KOG0783 Uncharacterized conser 78.6 2.6 5.5E-05 47.6 4.4 115 10-141 707-825 (1267)
17 KOG4682 Uncharacterized conser 72.1 6.6 0.00014 41.1 5.2 112 23-155 76-191 (488)
18 PF02214 BTB_2: BTB/POZ domain 65.5 3.1 6.7E-05 33.2 1.1 83 24-123 6-94 (94)
19 KOG4350 Uncharacterized conser 63.4 33 0.00071 36.3 8.1 146 17-173 46-214 (620)
20 PF11822 DUF3342: Domain of un 51.2 26 0.00056 35.5 5.0 90 26-131 14-104 (317)
21 PF07928 Vps54: Vps54-like pro 51.0 5.1 0.00011 35.4 0.0 120 24-183 1-125 (135)
22 KOG2422 Uncharacterized conser 47.9 13 0.00029 40.4 2.5 41 287-328 150-193 (665)
23 KOG2002 TPR-containing nuclear 46.9 11 0.00024 43.0 1.9 7 203-209 882-888 (1018)
24 PF03962 Mnd1: Mnd1 family; I 46.9 17 0.00037 33.7 2.8 41 105-150 145-187 (188)
25 PF14384 DUF4415: Domain of un 40.2 25 0.00055 26.9 2.4 26 307-332 34-59 (62)
26 PLN03083 E3 UFM1-protein ligas 34.8 17 0.00037 40.9 0.9 30 306-335 511-541 (803)
27 PRK05365 malonic semialdehyde 32.9 25 0.00054 31.8 1.5 34 107-150 131-164 (195)
28 PF03656 Pam16: Pam16; InterP 30.3 57 0.0012 28.8 3.3 36 130-165 51-88 (127)
29 cd02148 Nitroreductase_5 Nitro 29.1 29 0.00063 31.0 1.3 34 107-150 124-157 (185)
30 KOG2422 Uncharacterized conser 27.3 29 0.00063 38.0 1.1 6 197-202 70-75 (665)
31 PF09278 MerR-DNA-bind: MerR, 26.5 82 0.0018 23.3 3.2 39 132-184 13-51 (65)
32 PF05553 DUF761: Cotton fibre 24.7 64 0.0014 22.9 2.1 25 306-332 3-27 (38)
33 cd05029 S-100A6 S-100A6: S-100 24.4 68 0.0015 25.9 2.5 45 116-160 9-59 (88)
34 PF12112 DUF3579: Protein of u 23.7 44 0.00096 28.1 1.3 13 321-333 23-35 (92)
35 PF01886 DUF61: Protein of unk 22.3 71 0.0015 28.3 2.4 44 308-353 1-44 (132)
36 KOG0511 Ankyrin repeat protein 22.1 2.3E+02 0.0051 30.0 6.3 103 26-132 301-431 (516)
37 KOG1665 AFH1-interacting prote 21.5 96 0.0021 30.6 3.3 91 15-123 8-103 (302)
38 PRK11053 dihydropteridine redu 21.3 63 0.0014 29.6 2.0 34 104-147 147-180 (217)
39 PF06375 BLVR: Bovine leukaemi 21.0 32 0.0007 31.4 0.0 7 150-156 2-8 (154)
40 COG4957 Predicted transcriptio 20.4 1.3E+02 0.0028 27.3 3.6 36 133-186 98-133 (148)
41 PF03131 bZIP_Maf: bZIP Maf tr 20.2 1.6E+02 0.0034 24.1 3.9 41 130-178 5-45 (92)
No 1
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-42 Score=309.02 Aligned_cols=146 Identities=36% Similarity=0.588 Sum_probs=134.2
Q ss_pred CCCccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCC--------
Q 018184 13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS-------- 84 (359)
Q Consensus 13 ~~~~~IkL~SsDG~iF~Vs~eaA~qS~tI~~mL~~~g~g~~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~-------- 84 (359)
|++++|+|+|+||++|+|+.++|++|.+|++++.+.|++... .+|||| +|+|.||++||+||+||+.+++
T Consensus 2 ~~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~-~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~ 79 (162)
T KOG1724|consen 2 MSKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADEN-DPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKEL 79 (162)
T ss_pred CCCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccC-CccccC-ccCHHHHHHHHHHHHHcccccccccccccc
Confidence 668899999999999999999999999999999999886432 699999 7999999999999999998643
Q ss_pred -CcccchhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 018184 85 -SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (359)
Q Consensus 85 -s~~ei~~WD~eFL~~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T~EEEeEi~k~ 160 (359)
....++.||.+||++|..+||+||.|||||+|++|+++||++||+||+||||+|||++|||++|+|+||+.+++++
T Consensus 80 ~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e 156 (162)
T KOG1724|consen 80 PEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKE 156 (162)
T ss_pred cccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhc
Confidence 2234899999999999999999999999999999999999999999999999999999999999999988777765
No 2
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-36 Score=258.99 Aligned_cols=141 Identities=34% Similarity=0.514 Sum_probs=128.3
Q ss_pred ccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCC---C------c
Q 018184 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS---S------N 86 (359)
Q Consensus 16 ~~IkL~SsDG~iF~Vs~eaA~qS~tI~~mL~~~g~g~~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~---s------~ 86 (359)
+.|.|.|.||.+|.|+..+|..|-+|++|+.+.+- .+.|||+| +|.|.+|.+|++||+||..... . .
T Consensus 2 s~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~---~n~p~p~p-nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 2 SMIELESIDGEIFRVDENIAERSILIKNMLCDSTA---CNYPIPAP-NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred CceEEEecCCcEEEehHHHHHHHHHHHHHhccccc---cCCCCccc-chhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 47999999999999999999999999998865542 47889999 8999999999999999997421 1 1
Q ss_pred ccchhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 018184 87 KERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (359)
Q Consensus 87 ~ei~~WD~eFL~~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T~EEEeEi~k~ 160 (359)
.....||..|+.+|+++|++++.|||||+|++|+++||+.||.+|+||||+|||++|||++||||||++.++++
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkE 151 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKE 151 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 24567999999999999999999999999999999999999999999999999999999999999999999886
No 3
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=99.92 E-value=4.2e-25 Score=182.66 Aligned_cols=100 Identities=32% Similarity=0.523 Sum_probs=88.9
Q ss_pred ccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCc---ccchhh
Q 018184 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSN---KERKSF 92 (359)
Q Consensus 16 ~~IkL~SsDG~iF~Vs~eaA~qS~tI~~mL~~~g~g~~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~s~---~ei~~W 92 (359)
.+|+|+|+||++|.|+.++|++|++|++|+.+.|.+.+.+.+|||| +|++.+|++|++||+||+.++... ..+++|
T Consensus 2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~-~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLP-NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCC-CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 5899999999999999999999999999998776544334689999 799999999999999999865432 358999
Q ss_pred hhhhccCChHHHHHHHhhcccCCC
Q 018184 93 DEKFIRMDTKRLCELTSAADSLQL 116 (359)
Q Consensus 93 D~eFL~~D~~~LfeLI~AAnYLdI 116 (359)
|.+|++++.+.||+|+.||+||+|
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999997
No 4
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=99.87 E-value=6.2e-23 Score=162.98 Aligned_cols=72 Identities=40% Similarity=0.658 Sum_probs=62.2
Q ss_pred chhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 018184 89 RKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (359)
Q Consensus 89 i~~WD~eFL~~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T~EEEeEi~k~ 160 (359)
+++||++|++++.+.||+|+.||+||+|++|+++||++||.+|+||||+|||++|||++|+|+||+++++++
T Consensus 1 l~~wD~~F~~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e 72 (78)
T PF01466_consen 1 LPEWDQEFLDVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKE 72 (78)
T ss_dssp HHHHHHHHT-S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999987764
No 5
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=99.65 E-value=1.6e-16 Score=121.03 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=53.3
Q ss_pred cEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcc
Q 018184 17 YIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQ 80 (359)
Q Consensus 17 ~IkL~SsDG~iF~Vs~eaA~qS~tI~~mL~~~g~g~~~~~~IPLP~nVss~iLkkIIEwCe~Hk 80 (359)
+|+|+|+||+.|.|+.++|++|++|++|+.+.+.. ..+|||| +|++.+|++|++||+||+
T Consensus 2 ~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~---~~~Ipl~-~v~~~~L~kViewc~~H~ 61 (62)
T PF03931_consen 2 YVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDE---DEPIPLP-NVSSRILKKVIEWCEHHK 61 (62)
T ss_dssp EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCC---GTEEEET-TS-HHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhccc---ccccccC-ccCHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999998866542 2289999 899999999999999996
No 6
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=99.40 E-value=5.1e-13 Score=111.47 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=83.2
Q ss_pred CCCccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCC-CCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchh
Q 018184 13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMG-SSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKS 91 (359)
Q Consensus 13 ~~~~~IkL~SsDG~iF~Vs~eaA~qS~tI~~mL~~~g~g-~~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~s~~ei~~ 91 (359)
|.+.+|+|+|+||.+|.|.+++|+.|+||+.|+...|.. ......+-++ +|.+.+|+||.+|+.+......+..++|+
T Consensus 14 p~~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~-di~shiLeKvc~Yl~Yk~rY~~~s~eiPe 92 (112)
T KOG3473|consen 14 PDSMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFR-DIPSHILEKVCEYLAYKVRYTNSSTEIPE 92 (112)
T ss_pred cchhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEec-cchHHHHHHHHHHhhheeeeccccccCCC
Confidence 446799999999999999999999999999998755532 3346679999 79999999999999987666555567888
Q ss_pred hhhhhccCChHHHHHHHhhcccCCC
Q 018184 92 FDEKFIRMDTKRLCELTSAADSLQL 116 (359)
Q Consensus 92 WD~eFL~~D~~~LfeLI~AAnYLdI 116 (359)
| .+.+++.++|+.||+||++
T Consensus 93 F-----~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 93 F-----DIPPEMALELLMAANYLEC 112 (112)
T ss_pred C-----CCCHHHHHHHHHHhhhhcC
Confidence 7 4789999999999999974
No 7
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=97.92 E-value=5e-05 Score=61.16 Aligned_cols=99 Identities=22% Similarity=0.264 Sum_probs=75.5
Q ss_pred CccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhhh
Q 018184 15 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (359)
Q Consensus 15 ~~~IkL~SsDG~iF~Vs~eaA~-qS~tI~~mL~~~g~g~~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~s~~ei~~WD 93 (359)
...++|+..||..|.|...++. .|+.+++++...+........|+++ ++++.+|..+++||...... ++
T Consensus 10 ~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~Y~~~~~------~~--- 79 (111)
T PF00651_consen 10 FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP-DVSPEAFEAFLEYMYTGEIE------IN--- 79 (111)
T ss_dssp S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET-TSCHHHHHHHHHHHHHSEEE------EE---
T ss_pred CCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc-cccccccccccccccCCccc------CC---
Confidence 4579999999999999999985 6999999887663222222458888 79999999999999543311 11
Q ss_pred hhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHH
Q 018184 94 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALAR 129 (359)
Q Consensus 94 ~eFL~~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~ 129 (359)
..+.+.+|+.+|++|+|+.|...|+..+..
T Consensus 80 ------~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 80 ------SDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp -------TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 246689999999999999999999988754
No 8
>PHA02713 hypothetical protein; Provisional
Probab=97.69 E-value=0.00018 Score=75.68 Aligned_cols=106 Identities=11% Similarity=0.065 Sum_probs=84.2
Q ss_pred CccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCC-CCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhh
Q 018184 15 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSS-KNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 92 (359)
Q Consensus 15 ~~~IkL~SsDG~iF~Vs~eaA~-qS~tI~~mL~~~g~g~~-~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~s~~ei~~W 92 (359)
-+.|+|...+|+.|.+.+.++. .|+.++.|+.. ++.+. ....|.|. .|++.+|+.||+|+....
T Consensus 25 l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~-~~~e~~~~~~v~l~-~v~~~~~~~ll~y~Yt~~------------ 90 (557)
T PHA02713 25 LCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTT-PMIIRDLVTRVNLQ-MFDKDAVKNIVQYLYNRH------------ 90 (557)
T ss_pred CCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcC-CchhhccCceEEec-cCCHHHHHHHHHHhcCCC------------
Confidence 4579998888999999999887 68999998753 33221 24568897 799999999999987642
Q ss_pred hhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHH
Q 018184 93 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIR 140 (359)
Q Consensus 93 D~eFL~~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIR 140 (359)
++.+.+.+|+.||++|+|+.|.++||..+...+.-.+-=.|.
T Consensus 91 ------i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~ 132 (557)
T PHA02713 91 ------ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMY 132 (557)
T ss_pred ------CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHH
Confidence 234569999999999999999999999998877655544444
No 9
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.25 E-value=0.0008 Score=50.56 Aligned_cols=85 Identities=22% Similarity=0.246 Sum_probs=65.4
Q ss_pred eCCCCEEEecHHHHHH-cHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhhhhhhccCC
Q 018184 22 TADGSIQQVEQEVAMF-CPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMD 100 (359)
Q Consensus 22 SsDG~iF~Vs~eaA~q-S~tI~~mL~~~g~g~~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~s~~ei~~WD~eFL~~D 100 (359)
..+|..|.|...++.. |+.++.++..... ......|.++ ++++.+|..|++||..-... ++
T Consensus 5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~-~~~~~~i~l~-~~~~~~f~~~l~~ly~~~~~----------------~~ 66 (90)
T smart00225 5 VVGGKKFKAHKAVLAACSPYFKALFSGDFK-ESKKSEIYLD-DVSPEDFRALLEFLYTGKLD----------------LP 66 (90)
T ss_pred EECCEEEehHHHHHhhcCHHHHHHHcCCCc-cCCCCEEEec-CCCHHHHHHHHHeecCceee----------------cC
Confidence 5577999999988875 7999988753321 1135678898 69999999999999865321 23
Q ss_pred hHHHHHHHhhcccCCCchHHHHHH
Q 018184 101 TKRLCELTSAADSLQLKPLVDLTS 124 (359)
Q Consensus 101 ~~~LfeLI~AAnYLdIk~LldL~c 124 (359)
...+.+|+.+|.+++++.|.+.|+
T Consensus 67 ~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 67 EENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHHHCcHHHHhhhC
Confidence 336889999999999999998874
No 10
>PHA03098 kelch-like protein; Provisional
Probab=97.11 E-value=0.0027 Score=65.45 Aligned_cols=99 Identities=13% Similarity=0.175 Sum_probs=76.9
Q ss_pred CccEEEEe-CCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhh
Q 018184 15 KSYIWLQT-ADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 92 (359)
Q Consensus 15 ~~~IkL~S-sDG~iF~Vs~eaA~-qS~tI~~mL~~~g~g~~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~s~~ei~~W 92 (359)
-+.|+|.- .+|+.|.+.+.++. .|+.++.|+... +. ...|.|+ . +..+|+.|++|+..-.-
T Consensus 9 ~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~-~~---~~~i~l~-~-~~~~~~~~l~y~Ytg~~----------- 71 (534)
T PHA03098 9 FCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNN-FK---ENEINLN-I-DYDSFNEVIKYIYTGKI----------- 71 (534)
T ss_pred CCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCC-CC---CceEEec-C-CHHHHHHHHHHhcCCce-----------
Confidence 34566665 68999999999986 489999987533 22 4568897 5 99999999999876532
Q ss_pred hhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCC
Q 018184 93 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKT 135 (359)
Q Consensus 93 D~eFL~~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKT 135 (359)
.++.+.+.+|+.||++|+|+.|..+|++.+...|.-.+
T Consensus 72 -----~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~n 109 (534)
T PHA03098 72 -----NITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN 109 (534)
T ss_pred -----EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhH
Confidence 24556689999999999999999999998877665433
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=96.85 E-value=0.0022 Score=66.23 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=69.9
Q ss_pred cEEEEeCCCCEEEecHHHH-HHcHHHHHHHhhcCCCCCCCcccccC-CCCCHHHHHHHHHHHHhccCCCCCcccchhhhh
Q 018184 17 YIWLQTADGSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLP-QRVNPAMLSLILDYCRFHQVPGSSNKERKSFDE 94 (359)
Q Consensus 17 ~IkL~SsDG~iF~Vs~eaA-~qS~tI~~mL~~~g~g~~~~~~IPLP-~nVss~iLkkIIEwCe~Hk~~~~s~~ei~~WD~ 94 (359)
.-.+...-|..|.+.+.++ ..|+.++.|+.. ++.++.. .|.+. .+|+..+|+.||+|+..-+
T Consensus 22 ~~~~~~~~~~~~~~HR~VLAa~S~YFraMF~~-~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~-------------- 85 (480)
T PHA02790 22 FKTIIEAIGGNIIVNSTILKKLSPYFRTHLRQ-KYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGK-------------- 85 (480)
T ss_pred hceEEEEcCcEEeeehhhhhhcCHHHHHHhcC-Ccccccc-ceEEEecCcCHHHHHHHHHhheeee--------------
Confidence 3445556788999999995 458999999853 3433322 34331 2699999999999974432
Q ss_pred hhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHh
Q 018184 95 KFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132 (359)
Q Consensus 95 eFL~~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~Ik 132 (359)
+.++.+.+.+|+.||++|+|+.+++.||+.+...|.
T Consensus 86 --l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~ 121 (480)
T PHA02790 86 --VYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFR 121 (480)
T ss_pred --EEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 124455688889999999999999999888765544
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.36 E-value=0.0092 Score=63.46 Aligned_cols=95 Identities=26% Similarity=0.331 Sum_probs=75.6
Q ss_pred ccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhhhh
Q 018184 16 SYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDE 94 (359)
Q Consensus 16 ~~IkL~SsDG~iF~Vs~eaA~-qS~tI~~mL~~~g~g~~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~s~~ei~~WD~ 94 (359)
..+.|.-.+ +.|.+.+.++. .|+.++.|+.. +..+.....|.|. .|++.+|..+++|+.....
T Consensus 37 cDv~L~v~~-~~~~aHR~VLAa~S~YFraMFt~-~l~e~~~~~i~l~-~v~~~~l~~ll~y~Yt~~i------------- 100 (571)
T KOG4441|consen 37 CDVTLLVGD-REFPAHRVVLAACSPYFRAMFTS-GLKESKQKEINLE-GVDPETLELLLDYAYTGKL------------- 100 (571)
T ss_pred ceEEEEECC-eeechHHHHHHhccHHHHHHhcC-CcccccceEEEEe-cCCHHHHHHHHHHhhcceE-------------
Confidence 356666655 88998888876 58999999864 3334456778997 6999999999999877652
Q ss_pred hhccCChHHHHHHHhhcccCCCchHHHHHHHHHHH
Q 018184 95 KFIRMDTKRLCELTSAADSLQLKPLVDLTSRALAR 129 (359)
Q Consensus 95 eFL~~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~ 129 (359)
.++.+.+-+|+.||.+|+|..+++.||..+..
T Consensus 101 ---~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~ 132 (571)
T KOG4441|consen 101 ---EISEDNVQELLEAASLLQIPEVVDACCEFLES 132 (571)
T ss_pred ---EechHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35667788999999999999999999988764
No 13
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=88.61 E-value=2.1 Score=41.23 Aligned_cols=103 Identities=23% Similarity=0.266 Sum_probs=75.3
Q ss_pred CccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCC-CCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhh
Q 018184 15 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGM-GSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 92 (359)
Q Consensus 15 ~~~IkL~SsDG~iF~Vs~eaA~-qS~tI~~mL~~~g~-g~~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~s~~ei~~W 92 (359)
...|+| ---|.+|.-+...+. +.+.++.|+..... ..+....|=| .-++.-+..|+.|++--... +|+
T Consensus 4 ~~~vkL-nvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI--DRSpKHF~~ILNfmRdGdv~------LPe- 73 (230)
T KOG2716|consen 4 SETVKL-NVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI--DRSPKHFDTILNFMRDGDVD------LPE- 73 (230)
T ss_pred cceEEE-ecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe--cCChhHHHHHHHhhhccccc------Ccc-
Confidence 334554 346789998888776 46888888764421 2223344656 58999999999999843322 222
Q ss_pred hhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCC
Q 018184 93 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGK 134 (359)
Q Consensus 93 D~eFL~~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGK 134 (359)
+...|-+|+.=|.|..+.+|+++|..+++..+.+.
T Consensus 74 -------~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~ 108 (230)
T KOG2716|consen 74 -------SEKELKELLREAEFYLLDGLVELCQSAIARLIRGY 108 (230)
T ss_pred -------chHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCc
Confidence 45779999999999999999999999999988775
No 14
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.14 E-value=1.4 Score=41.28 Aligned_cols=38 Identities=32% Similarity=0.556 Sum_probs=30.2
Q ss_pred Hhhccc--CCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 018184 108 TSAADS--LQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (359)
Q Consensus 108 I~AAnY--LdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T 150 (359)
..|||. =+|--|.++||+.. |.-+.+||+.||||+||.
T Consensus 161 ~eaanrwtDnI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d 200 (203)
T KOG3433|consen 161 AEAANRWTDNIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD 200 (203)
T ss_pred HHHHhhhhhhHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence 344443 37888888888776 899999999999999884
No 15
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=80.17 E-value=1.3 Score=41.45 Aligned_cols=31 Identities=32% Similarity=0.617 Sum_probs=26.2
Q ss_pred CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 018184 115 QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (359)
Q Consensus 115 dIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T 150 (359)
+|.-|.++.|+.. |.-|+|||+.||||+||.
T Consensus 174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld 204 (209)
T COG5124 174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLD 204 (209)
T ss_pred hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchh
Confidence 6777888888665 889999999999999874
No 16
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=78.59 E-value=2.6 Score=47.57 Aligned_cols=115 Identities=22% Similarity=0.256 Sum_probs=73.6
Q ss_pred CCCCCCccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCccc-ccCCCCCHHHHHHHHHHHHhccCCCCCcc
Q 018184 10 KPEMMKSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAI-SLPQRVNPAMLSLILDYCRFHQVPGSSNK 87 (359)
Q Consensus 10 kpe~~~~~IkL~SsDG~iF~Vs~eaA~-qS~tI~~mL~~~g~g~~~~~~I-PLP~nVss~iLkkIIEwCe~Hk~~~~s~~ 87 (359)
+||.+...|+++ ||.+|.....++. .+.++..|+.-.-+..+ .... -.| ++.+.|+-|++|+.-.-.
T Consensus 707 h~e~~d~~i~~K--DGkvl~aHkc~L~aRlEYF~smf~~~w~E~s-S~t~~~~p--~~~e~m~ivLdylYs~d~------ 775 (1267)
T KOG0783|consen 707 HEETMDTVIKLK--DGKVLKAHKCFLSARLEYFSSMFQFVWMESS-SITVNLSP--LTVEHMSIVLDYLYSDDK------ 775 (1267)
T ss_pred CccceeEEEEec--CCcCcccceeEeeeHHHHHHHHHHHHHhhhc-cceeecCc--chHHHHHHHHHHHHccch------
Confidence 466555555555 9998876554442 23444444443332211 1222 234 779999999999763221
Q ss_pred cchhhhhhhcc--CChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHh
Q 018184 88 ERKSFDEKFIR--MDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 141 (359)
Q Consensus 88 ei~~WD~eFL~--~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe 141 (359)
.+|++ -..+-+|+++..|+-|=|..|-++|-+.+-+.+.=|+..++-+
T Consensus 776 ------~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~lle 825 (1267)
T KOG0783|consen 776 ------VELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLE 825 (1267)
T ss_pred ------HHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHH
Confidence 22222 2445699999999999999999999999988888887665544
No 17
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=72.15 E-value=6.6 Score=41.08 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=72.4
Q ss_pred CCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCc----ccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhhhhhhcc
Q 018184 23 ADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNY----AISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIR 98 (359)
Q Consensus 23 sDG~iF~Vs~eaA~qS~tI~~mL~~~g~g~~~~~----~IPLP~nVss~iLkkIIEwCe~Hk~~~~s~~ei~~WD~eFL~ 98 (359)
.=|.+..+..--+.||+.+..|....--. +... .||=| +|+...|.-++-=+.+.- +.
T Consensus 76 alg~eWrlHk~yL~QS~yf~smf~Gtw~e-s~~~iIqleI~Dp-~Id~~al~~a~gsLY~dE----------------ve 137 (488)
T KOG4682|consen 76 ALGFEWRLHKPYLFQSEYFKSMFSGTWKE-SSMNIIQLEIPDP-NIDVVALQVAFGSLYRDE----------------VE 137 (488)
T ss_pred hccceeeeeeeeeeccHHHHHHhccccCh-hhCceEEEEcCCC-cccHHHHHHHHhhhhhhh----------------ee
Confidence 34667777777777888888776433211 1111 24555 677777776654433221 24
Q ss_pred CChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhh
Q 018184 99 MDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKL 155 (359)
Q Consensus 99 ~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T~EEEe 155 (359)
++.+.+..++.||.+|..++|++-|...+-..| +|+-+..++....-+-.|.-.
T Consensus 138 I~l~dv~gvlAaA~~lqldgl~qrC~evMie~l---spkta~~yYea~ckYgle~vk 191 (488)
T KOG4682|consen 138 IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETL---SPKTACGYYEAACKYGLESVK 191 (488)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc---ChhhhhHhhhhhhhhhhHHHH
Confidence 678899999999999999999999987765544 555566666666555444433
No 18
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=65.50 E-value=3.1 Score=33.23 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=52.6
Q ss_pred CCCEEEecHHHHHHc--HHHHHHHhhc--CCCCCCCcccccCCCCCHHHHHHHHHHHHhc-cCCCCCcccchhhhhhhcc
Q 018184 24 DGSIQQVEQEVAMFC--PLICQEVIQK--GMGSSKNYAISLPQRVNPAMLSLILDYCRFH-QVPGSSNKERKSFDEKFIR 98 (359)
Q Consensus 24 DG~iF~Vs~eaA~qS--~tI~~mL~~~--g~g~~~~~~IPLP~nVss~iLkkIIEwCe~H-k~~~~s~~ei~~WD~eFL~ 98 (359)
-|+.|.++.+.+..- +.+..++... .........+=| +-++..++.|+.|++.. .-+.
T Consensus 6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi--DRdp~~F~~IL~ylr~~~~l~~--------------- 68 (94)
T PF02214_consen 6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI--DRDPELFEYILNYLRTGGKLPI--------------- 68 (94)
T ss_dssp TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE--SS-HHHHHHHHHHHHHTSSB-----------------
T ss_pred CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe--ccChhhhhHHHHHHhhcCccCC---------------
Confidence 589999999998742 4555555532 111123445555 58999999999999985 2111
Q ss_pred CChHHHHHHHhhcccCCCchH-HHHH
Q 018184 99 MDTKRLCELTSAADSLQLKPL-VDLT 123 (359)
Q Consensus 99 ~D~~~LfeLI~AAnYLdIk~L-ldL~ 123 (359)
.+...+..|...|.|.+|..| ++.|
T Consensus 69 ~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 69 PDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp -TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred CCchhHHHHHHHHHHcCCCccccCCC
Confidence 122346788899999999998 6543
No 19
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=63.43 E-value=33 Score=36.34 Aligned_cols=146 Identities=14% Similarity=0.194 Sum_probs=95.3
Q ss_pred cEEEEeCCCCEEEecHHHH-HHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCC--CC--------
Q 018184 17 YIWLQTADGSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPG--SS-------- 85 (359)
Q Consensus 17 ~IkL~SsDG~iF~Vs~eaA-~qS~tI~~mL~~~g~g~~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~--~s-------- 85 (359)
.|+++-.| ..|...+-++ ..|..++.+|- .|+.++....|||. .-++..++.++.|+..-+-.- -.
T Consensus 46 DVtfvve~-~rfpAHRvILAaRs~yFRAlLY-gGm~Es~q~~ipLq-~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~L 122 (620)
T KOG4350|consen 46 DVTFVVED-TRFPAHRVILAARSSYFRALLY-GGMQESHQQLIPLQ-ETNSEAFRALLRYIYTGKIDLAGVEEDILLDYL 122 (620)
T ss_pred ceEEEEec-cccchhhhhHHHHHHHHHHHHh-hhhhhhhhcccccc-cccHHHHHHHHHHHhhcceecccchHHHHHHHH
Confidence 56666666 6666665544 46899987653 55655556779996 577999999999987755421 00
Q ss_pred -----------cccchhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhh
Q 018184 86 -----------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEK 154 (359)
Q Consensus 86 -----------~~ei~~WD~eFL~~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T~EEE 154 (359)
...++++-.+++ ..+.+|-++.||.+.+++.|.++||..+ .+.+.++-.--+.. -++.+-.
T Consensus 123 slAh~Ygf~~Le~aiSeYl~~iL--~~~NvCmifdaA~ly~l~~Lt~~C~mfm-----DrnA~~lL~~~sFn-~LSk~sL 194 (620)
T KOG4350|consen 123 SLAHRYGFIQLETAISEYLKEIL--KNENVCMIFDAAYLYQLTDLTDYCMMFM-----DRNADQLLEDPSFN-RLSKDSL 194 (620)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHH--cccceeeeeeHHHHhcchHHHHHHHHHH-----hcCHHhhhcCcchh-hhhHHHH
Confidence 112344444444 4456888899999999999999999655 66677764422221 2444544
Q ss_pred hcccc-ccCCChhHHHHHHH
Q 018184 155 LEPLK-NTTDDPRIRLLNRL 173 (359)
Q Consensus 155 eEi~k-~~~~dp~~~~ln~~ 173 (359)
++++. .-++.|....++-+
T Consensus 195 ~e~l~RDsFfApE~~IFlAv 214 (620)
T KOG4350|consen 195 KELLARDSFFAPELKIFLAV 214 (620)
T ss_pred HHHHhhhcccchHHHHHHHH
Confidence 44443 36778887776654
No 20
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=51.21 E-value=26 Score=35.47 Aligned_cols=90 Identities=8% Similarity=0.106 Sum_probs=60.2
Q ss_pred CEEEecHHHHHH-cHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhhhhhhccCChHHH
Q 018184 26 SIQQVEQEVAMF-CPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRL 104 (359)
Q Consensus 26 ~iF~Vs~eaA~q-S~tI~~mL~~~g~g~~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~s~~ei~~WD~eFL~~D~~~L 104 (359)
+.|..+...+.. .++++..+...-.+.....+|+|-+.-+-.|++=+++|++... | .++.+..
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~---p-------------~l~~~Nv 77 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEP---P-------------SLTPSNV 77 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCC---C-------------cCCcCcE
Confidence 568888888765 6888887643100111344566643456677777777776611 1 1345667
Q ss_pred HHHHhhcccCCCchHHHHHHHHHHHHH
Q 018184 105 CELTSAADSLQLKPLVDLTSRALARII 131 (359)
Q Consensus 105 feLI~AAnYLdIk~LldL~ck~VA~~I 131 (359)
..|+.-|+||+|++|++.|-.++...+
T Consensus 78 vsIliSS~FL~M~~Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 78 VSILISSEFLQMESLVEECLQYCHDHM 104 (317)
T ss_pred EEeEehhhhhccHHHHHHHHHHHHHhH
Confidence 888999999999999999998885543
No 21
>PF07928 Vps54: Vps54-like protein; InterPro: IPR012501 This family contains various proteins that are homologues of the yeast Vps54 protein, such as the rat homologue (Q9JMK8 from SWISSPROT), the human homologue (Q86YF7 from SWISSPROT), and the mouse homologue (Q8R3X1 from SWISSPROT). In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments []. All Vps54 homologues contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs []. ; GO: 0042147 retrograde transport, endosome to Golgi; PDB: 3N1E_B 3N1B_B.
Probab=50.96 E-value=5.1 Score=35.39 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=12.3
Q ss_pred CCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhhhhhhccCChHH
Q 018184 24 DGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKR 103 (359)
Q Consensus 24 DG~iF~Vs~eaA~qS~tI~~mL~~~g~g~~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~s~~ei~~WD~eFL~~D~~~ 103 (359)
||+.|.|...++..-+.|.+.+. ....+| .+.++++.++++|.+.. +..
T Consensus 1 d~e~f~vv~s~l~ll~~l~~Y~~---------~~~~~P-~~a~di~~~l~elLk~f---------------------NSr 49 (135)
T PF07928_consen 1 DNEKFVVVGSALLLLKMLSDYLQ---------LASNFP-SLAPDILSRLLELLKLF---------------------NSR 49 (135)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceecHHHHHHHHHHHHHHHH---------HHHHCc-hhHHHHHHHHHHHHHHH---------------------HHH
Confidence 67777777777766666655432 123366 57777777777776544 345
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHHHHhCC-----CHHHHHhHcCCCCCCChHhhhccccccCCChhHHHHHHHHHHHH
Q 018184 104 LCELTSAADSLQLKPLVDLTSRALARIIEGK-----TPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKR 178 (359)
Q Consensus 104 LfeLI~AAnYLdIk~LldL~ck~VA~~IkGK-----TpEEIRe~FgI~~D~T~EEEeEi~k~~~~dp~~~~ln~~~ak~~ 178 (359)
.++|+..|-....-+|-.++.+.+|-..+.- -.--||.+|.-- .++ -..-++ -.|+.+.+.|..-+
T Consensus 50 ~~qlVLGAGA~~~agLK~IT~KhLALasq~L~~~~~lip~i~~~~~~~--~~~-~~~~~~------~~fd~v~~dy~~H~ 120 (135)
T PF07928_consen 50 CCQLVLGAGAMRSAGLKTITAKHLALASQSLSFIISLIPYIREFFERH--LPS-KQQSLL------REFDKVKRDYQDHQ 120 (135)
T ss_dssp -------------------------------------------------------HHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCc-ccchHH------HHHHHHHHHHHHHH
Confidence 7888888988888888888887776543322 133455554433 111 111111 14666777777766
Q ss_pred HHHHH
Q 018184 179 KELKE 183 (359)
Q Consensus 179 ~el~~ 183 (359)
.|+-.
T Consensus 121 ~eI~~ 125 (135)
T PF07928_consen 121 NEIFS 125 (135)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 22
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.87 E-value=13 Score=40.43 Aligned_cols=41 Identities=27% Similarity=0.213 Sum_probs=19.1
Q ss_pred ccccccCCCCCCc---CChHHHHHHhHHHHHHHHHhcCChhHHHH
Q 018184 287 RKVDFDDVDIDDE---IDPALKEKLDREVEDFARRLNSDWPERMQ 328 (359)
Q Consensus 287 ~~~~~~~~~~~~~---~d~~~~~~~~~~~~~f~~~~~~~~~~~~~ 328 (359)
|-+.+.|.+.++. ++-.+-.+.-+=+-+| +.||-+-+=+.|
T Consensus 150 ~~v~~i~~~~~~~~~~l~r~l~~k~~k~~v~~-~~lnpdtE~k~~ 193 (665)
T KOG2422|consen 150 DWVLEIDLKSDPLFTELPRSLGSKSCKLFVDF-KKLNPDTEFKLQ 193 (665)
T ss_pred hhHHHHhhhcccccCccchhHHHHHHHHHHhh-hccCCCchhhhh
Confidence 3355655555443 3323333333333233 567776655443
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=46.91 E-value=11 Score=42.97 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=4.8
Q ss_pred HHHHhhh
Q 018184 203 DDLLQFI 209 (359)
Q Consensus 203 d~ll~fi 209 (359)
++.+.|+
T Consensus 882 k~~~~~~ 888 (1018)
T KOG2002|consen 882 KEILKLP 888 (1018)
T ss_pred HHHHhcc
Confidence 5667777
No 24
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.86 E-value=17 Score=33.73 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=29.9
Q ss_pred HHHHhhcccC--CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 018184 105 CELTSAADSL--QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (359)
Q Consensus 105 feLI~AAnYL--dIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T 150 (359)
..+..||+.. +|..|..+|++. -|.+.++|++.||||+||.
T Consensus 145 ~~~~~~anrwTDNI~~l~~~~~~k-----~~~~~~~i~k~f~Ip~d~d 187 (188)
T PF03962_consen 145 KIAKEAANRWTDNIFSLKSYLKKK-----FGMDEEDIRKEFGIPEDFD 187 (188)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHh-----cCCCHHHHHHHcCCccccC
Confidence 3444466654 566677766654 3899999999999999883
No 25
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=40.24 E-value=25 Score=26.89 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=23.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHh
Q 018184 307 KLDREVEDFARRLNSDWPERMQEILS 332 (359)
Q Consensus 307 ~~~~~~~~f~~~~~~~~~~~~~~~~~ 332 (359)
.||.+|-+|.+..-..|+-||+++|.
T Consensus 34 rld~dVl~~fka~G~gyQtriN~~Lr 59 (62)
T PF14384_consen 34 RLDPDVLEWFKAQGKGYQTRINEALR 59 (62)
T ss_pred EeCHHHHHHHHHHChhHHHHHHHHHH
Confidence 46788999999999999999999885
No 26
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=34.84 E-value=17 Score=40.88 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=21.8
Q ss_pred HHHhHHHHHHHH-HhcCChhHHHHHHHhcCC
Q 018184 306 EKLDREVEDFAR-RLNSDWPERMQEILSLGH 335 (359)
Q Consensus 306 ~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~ 335 (359)
+.|-+++.+-.| -||..|.+|.++++...+
T Consensus 511 ~~ll~~lA~~l~p~l~~~~~~~~~~~~~~~~ 541 (803)
T PLN03083 511 GSILKHLADHLRPMLINSLKERRKALFTENA 541 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 366667666554 589999999998875433
No 27
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=32.85 E-value=25 Score=31.79 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=27.4
Q ss_pred HHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 018184 107 LTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (359)
Q Consensus 107 LI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T 150 (359)
|+.||..||+.. .++.|-..+.+++.|||++++.
T Consensus 131 l~LaA~~~Glgs----------~~~~g~~~~~v~~~l~ip~~~~ 164 (195)
T PRK05365 131 LILAARALGLDA----------GPMSGFDAAAVDAEFFAGTTWK 164 (195)
T ss_pred HHHHHHHcCCcc----------CCccccCHHHHHHHhCCCCCee
Confidence 888999988876 2456778899999999986553
No 28
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=30.31 E-value=57 Score=28.77 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=18.9
Q ss_pred HHhCCCHHHHHhHcCCCCCCChHhhhcccccc--CCCh
Q 018184 130 IIEGKTPEEIREIFHLPDDLTEEEKLEPLKNT--TDDP 165 (359)
Q Consensus 130 ~IkGKTpEEIRe~FgI~~D~T~EEEeEi~k~~--~~dp 165 (359)
...|.|.+|-++++|++...++||-.+.-+.. .+||
T Consensus 51 ~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~ 88 (127)
T PF03656_consen 51 NSKGMTLDEARQILNVKEELSREEIQKRYKHLFKANDP 88 (127)
T ss_dssp ------HHHHHHHHT--G--SHHHHHHHHHHHHHHT-C
T ss_pred hcCCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCC
Confidence 45699999999999999989988877654442 3455
No 29
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=29.11 E-value=29 Score=31.01 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 018184 107 LTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (359)
Q Consensus 107 LI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T 150 (359)
|+.||..||+.. .+|.|-..+++++.|||++++.
T Consensus 124 l~LaA~~lGlgs----------~~~~g~d~~~~~~~L~lp~~~~ 157 (185)
T cd02148 124 FILAARALGLDA----------GPMSGFDAAAVDAEFFADTRWR 157 (185)
T ss_pred HHHHHHHcCCCc----------CCCcccCHHHHHHHhCCCCCeE
Confidence 888888888875 3556778899999999997653
No 30
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.33 E-value=29 Score=38.00 Aligned_cols=6 Identities=67% Similarity=0.612 Sum_probs=2.8
Q ss_pred cccCCh
Q 018184 197 VDERSV 202 (359)
Q Consensus 197 ~d~~s~ 202 (359)
.|+++|
T Consensus 70 ~de~~~ 75 (665)
T KOG2422|consen 70 RDEPSV 75 (665)
T ss_pred ccCccc
Confidence 455543
No 31
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=26.46 E-value=82 Score=23.26 Aligned_cols=39 Identities=36% Similarity=0.465 Sum_probs=25.2
Q ss_pred hCCCHHHHHhHcCCCCCCChHhhhccccccCCChhHHHHHHHHHHHHHHHHHH
Q 018184 132 EGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKER 184 (359)
Q Consensus 132 kGKTpEEIRe~FgI~~D~T~EEEeEi~k~~~~dp~~~~ln~~~ak~~~el~~~ 184 (359)
-|-|.+|||+++.+.++ .+|.......+.+.+++++.++
T Consensus 13 lGfsL~eI~~~l~l~~~--------------~~~~~~~~~~~l~~~~~~i~~~ 51 (65)
T PF09278_consen 13 LGFSLEEIRELLELYDQ--------------GDPPCADRRALLEEKLEEIEEQ 51 (65)
T ss_dssp TT--HHHHHHHHHHCCS--------------HCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhccCC--------------CCCCHHHHHHHHHHHHHHHHHH
Confidence 39999999999988654 1233344556667778887665
No 32
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=24.67 E-value=64 Score=22.93 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=19.7
Q ss_pred HHHhHHHHHHHHHhcCChhHHHHHHHh
Q 018184 306 EKLDREVEDFARRLNSDWPERMQEILS 332 (359)
Q Consensus 306 ~~~~~~~~~f~~~~~~~~~~~~~~~~~ 332 (359)
+.||+-+|+|.++.+-.| |||..-|
T Consensus 3 ~evd~rAe~FI~~f~~ql--rlqr~~S 27 (38)
T PF05553_consen 3 DEVDRRAEEFIAKFREQL--RLQRQES 27 (38)
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 578999999999999887 6664433
No 33
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=24.39 E-value=68 Score=25.93 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=29.8
Q ss_pred CchHHHHHHHHHHHHH-hCC-CHHHHHhHcC----CCCCCChHhhhccccc
Q 018184 116 LKPLVDLTSRALARII-EGK-TPEEIREIFH----LPDDLTEEEKLEPLKN 160 (359)
Q Consensus 116 Ik~LldL~ck~VA~~I-kGK-TpEEIRe~Fg----I~~D~T~EEEeEi~k~ 160 (359)
|..|+.+..++.++-= +|. +.+|+|.++. +-..+|++|-.++++.
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~ 59 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMED 59 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3456666666665321 333 8999999883 4566888888877764
No 34
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=23.66 E-value=44 Score=28.13 Aligned_cols=13 Identities=46% Similarity=0.907 Sum_probs=10.8
Q ss_pred CChhHHHHHHHhc
Q 018184 321 SDWPERMQEILSL 333 (359)
Q Consensus 321 ~~~~~~~~~~~~~ 333 (359)
|||.||+-.+|+.
T Consensus 23 SDWaERL~gvla~ 35 (92)
T PF12112_consen 23 SDWAERLCGVLAS 35 (92)
T ss_dssp TTHHHHHHHTT-E
T ss_pred ccHHHHHHHHHHc
Confidence 8999999988775
No 35
>PF01886 DUF61: Protein of unknown function DUF61; InterPro: IPR002746 The proteins in this entry are functionally uncharacterised.
Probab=22.31 E-value=71 Score=28.28 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=30.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHhcCCCCccceeecCCCCccccc
Q 018184 308 LDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRY 353 (359)
Q Consensus 308 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (359)
|||=++...+++|+.||.+=.-+-.+-+|-+| +.+..||+.+++
T Consensus 1 ~dr~~~~ei~~iN~~lP~~rktL~eLL~ee~P--~i~lrdG~~h~f 44 (132)
T PF01886_consen 1 IDRILEKEIRRINKHLPRERKTLKELLEEEKP--SIILRDGSRHRF 44 (132)
T ss_pred ChhHHHHHHHHHHhhchHhhhhHHHHHhCCCC--eEEecCCCEEEE
Confidence 56778888999999998765555555556665 345557877664
No 36
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=22.12 E-value=2.3e+02 Score=29.97 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=71.3
Q ss_pred CEEEecHHHHHHcHHHHHHHhhcCCCCCCCcc---cccCCCCCHHHHHHHHHHHHhccCCCC----C-------------
Q 018184 26 SIQQVEQEVAMFCPLICQEVIQKGMGSSKNYA---ISLPQRVNPAMLSLILDYCRFHQVPGS----S------------- 85 (359)
Q Consensus 26 ~iF~Vs~eaA~qS~tI~~mL~~~g~g~~~~~~---IPLP~nVss~iLkkIIEwCe~Hk~~~~----s------------- 85 (359)
....+...++..+.+...|+...-...+.+.. ..|| +..+.+.+.++.|+..|+.+-+ +
T Consensus 301 ~RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp-~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLP-SLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHHHHHHHHHHhccchhhhcCCccccccccc-hHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 34778888888888999887655333222333 4588 7889999999999999987521 0
Q ss_pred --------cccchhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHh
Q 018184 86 --------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132 (359)
Q Consensus 86 --------~~ei~~WD~eFL~~D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~Ik 132 (359)
...+..| .+| +|.-.+++++.-|.-+....|=..+...+|+.+.
T Consensus 380 dr~Lkt~as~~itq~-~e~--id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~ 431 (516)
T KOG0511|consen 380 DRLLKTAASAEITQW-LEL--IDMYGVLDILEYCWDLVACRLEQFAETHEARHLL 431 (516)
T ss_pred hhhhhhhhhHHHHHH-HHH--HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 1123445 223 2444578888888888888888888888887654
No 37
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=21.48 E-value=96 Score=30.58 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=59.9
Q ss_pred CccEEEEeCCCCEEEe--cHHHHHH-cHHHHHHHhhcCCCC--CCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccc
Q 018184 15 KSYIWLQTADGSIQQV--EQEVAMF-CPLICQEVIQKGMGS--SKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKER 89 (359)
Q Consensus 15 ~~~IkL~SsDG~iF~V--s~eaA~q-S~tI~~mL~~~g~g~--~~~~~IPLP~nVss~iLkkIIEwCe~Hk~~~~s~~ei 89 (359)
+++|+|- -.|+.|.- +.-+.+. -.++..|+...|-+. +....+-| .-++.-++-|+.|+++-+-+.
T Consensus 8 ~~~vrln-igGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI--DRsp~yFepIlNyLr~Gq~~~------ 78 (302)
T KOG1665|consen 8 SSMVRLN-IGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI--DRSPKYFEPILNYLRDGQIPS------ 78 (302)
T ss_pred hhhheee-cCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE--ccCchhhHHHHHHHhcCceee------
Confidence 4456654 35666653 3333333 256677887776432 23344555 588999999999998876432
Q ss_pred hhhhhhhccCChHHHHHHHhhcccCCCchHHHHH
Q 018184 90 KSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLT 123 (359)
Q Consensus 90 ~~WD~eFL~~D~~~LfeLI~AAnYLdIk~LldL~ 123 (359)
...-.+++++.+|.|.+|-+|++-.
T Consensus 79 ---------~s~i~~lgvLeeArff~i~sL~~hl 103 (302)
T KOG1665|consen 79 ---------LSDIDCLGVLEEARFFQILSLKDHL 103 (302)
T ss_pred ---------cCCccHHHHHHHhhHHhhHhHHhHH
Confidence 2233488999999999999998743
No 38
>PRK11053 dihydropteridine reductase; Provisional
Probab=21.31 E-value=63 Score=29.60 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCC
Q 018184 104 LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPD 147 (359)
Q Consensus 104 LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~~ 147 (359)
+-.|+.||..||+..- +|.|-.++.+++.|||++
T Consensus 147 ~~~lmLaA~~~Glgs~----------~i~g~~~~~v~~~l~ip~ 180 (217)
T PRK11053 147 LGNLLLGAAALGIDAT----------PIEGFDAAILDAEFGLRE 180 (217)
T ss_pred HHHHHHHHHHcCCCCC----------CcCCcCHHHHHHHhCCCC
Confidence 3467777777777643 456778999999999984
No 39
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=21.04 E-value=32 Score=31.38 Aligned_cols=7 Identities=43% Similarity=0.302 Sum_probs=0.0
Q ss_pred ChHhhhc
Q 018184 150 TEEEKLE 156 (359)
Q Consensus 150 T~EEEeE 156 (359)
|+||.+.
T Consensus 2 ~eEEl~r 8 (154)
T PF06375_consen 2 DEEELER 8 (154)
T ss_dssp -------
T ss_pred CHHHHHH
Confidence 4444443
No 40
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=20.41 E-value=1.3e+02 Score=27.32 Aligned_cols=36 Identities=33% Similarity=0.539 Sum_probs=27.7
Q ss_pred CCCHHHHHhHcCCCCCCChHhhhccccccCCChhHHHHHHHHHHHHHHHHHHhh
Q 018184 133 GKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREK 186 (359)
Q Consensus 133 GKTpEEIRe~FgI~~D~T~EEEeEi~k~~~~dp~~~~ln~~~ak~~~el~~~~~ 186 (359)
|.||+|-|+.||+|.|+. | .---||..|.+|-+.-.
T Consensus 98 gmTPd~YR~KW~LP~dYP-------M-----------vAPnYAa~RS~LAK~mG 133 (148)
T COG4957 98 GLTPDEYRAKWGLPPDYP-------M-----------VAPNYAAARSQLAKAMG 133 (148)
T ss_pred CCCHHHHHHhcCCCCCCC-------c-----------cchHHHHHHHHHHHHhC
Confidence 899999999999999883 2 22348889998866533
No 41
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=20.24 E-value=1.6e+02 Score=24.06 Aligned_cols=41 Identities=32% Similarity=0.356 Sum_probs=28.8
Q ss_pred HHhCCCHHHHHhHcCCCCCCChHhhhccccccCCChhHHHHHHHHHHHH
Q 018184 130 IIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKR 178 (359)
Q Consensus 130 ~IkGKTpEEIRe~FgI~~D~T~EEEeEi~k~~~~dp~~~~ln~~~ak~~ 178 (359)
.|...+++|+..++ ..+|+++...+..- +=++=||.||...
T Consensus 5 eL~~m~v~efn~~L---~~lt~~q~~~lK~~-----RRr~KNR~~A~~c 45 (92)
T PF03131_consen 5 ELVSMSVREFNRLL---RGLTEEQIAELKQR-----RRRLKNRGYAQNC 45 (92)
T ss_dssp HHHHS-HHHHHHHC---TTS-HHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHH---HcCCHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 45567889999888 78998887765442 4457899999853
Done!