BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018185
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 36 SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAI-KSLIA 94
++ +ATTH+ P K L L+ + + ++L +R TT+ + V + KSLI
Sbjct: 32 TVCKATTHEI-MGPKKKHLDYLIQCTNEMNVNIPQLADSLFER--TTNSSWVVVFKSLIT 88
Query: 95 VHHIVKHGSFILQDQLSVYPSAGGRNYL-KLSNFRDNTTPLTWELSSWVRWYALYLEHLL 153
HH++ +G+ ++ Y ++ RN L LSNF D + +++S+++R Y+ YL
Sbjct: 89 THHLMVYGN----ERFIQYLAS--RNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKA 142
Query: 154 STSRVLGF 161
+ R + F
Sbjct: 143 VSYRQVAF 150
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 36 SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAI-KSLIA 94
++ +ATTH+ P K L L+ + + ++L +R TT+ + V + KSLI
Sbjct: 32 TVCKATTHEI-MGPKKKHLDYLIQCTNEMNVNIPQLADSLFER--TTNSSWVVVFKSLIT 88
Query: 95 VHHIVKHGSFILQDQLSVYPSAGGRNYL-KLSNFRDNTTPLTWELSSWVRWYALYLEHLL 153
HH++ +G+ ++ Y ++ RN L LSNF D + +++S+++R Y+ YL
Sbjct: 89 THHLMVYGN----ERFIQYLAS--RNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKA 142
Query: 154 STSRVLGF 161
+ R + F
Sbjct: 143 VSYRQVAF 150
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 36 SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAI-KSLIA 94
++ +ATTH+ P K L L+ + + ++L +R TT+ + V + KSLI
Sbjct: 25 TVCKATTHEI-MGPKKKHLDYLIQCTNEMNVNIPQLADSLFER--TTNSSWVVVFKSLIT 81
Query: 95 VHHIVKHGSFILQDQLSVYPSAGGRNYL-KLSNFRDNTTPLTWELSSWVRWYALYLEHLL 153
HH++ +G+ ++ Y ++ RN L LSNF D + +++S+++R Y+ YL
Sbjct: 82 THHLMVYGN----ERFIQYLAS--RNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKA 135
Query: 154 STSRVLGF 161
+ R + F
Sbjct: 136 VSYRQVAF 143
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 36 SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAI-KSLIA 94
++ +ATTH+ P K L L+ + + ++L +R TT+ + V + KSLI
Sbjct: 32 TVCKATTHEI-MGPKKKHLDYLIQCTNEMNVNIPQLADSLFER--TTNSSWVVVFKSLIT 88
Query: 95 VHHIVKHGSFILQDQLSVYPSAGGRNYL-KLSNFRDNTTPLTWELSSWVRWYALYLEHLL 153
HH++ +G+ ++ Y ++ RN L LSNF D + +++S+++R Y+ YL
Sbjct: 89 THHLMVYGN----ERFIQYLAS--RNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKA 142
Query: 154 STSRVLGF 161
+ R + F
Sbjct: 143 VSYRQVAF 150
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
pdb|1HX8|B Chain B, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
Length = 299
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 18/137 (13%)
Query: 36 SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAV 95
S+ +ATT + P K L L+ + + + L++R Q + V KSLI
Sbjct: 27 SVCKATTEE-CIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNA-NWVVVYKSLITT 84
Query: 96 HHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTP-----------LTWELSSWVRW 144
HH++ +G+ L A + LS+F D T + +++S ++R
Sbjct: 85 HHLMAYGNERFMQYL-----ASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRR 139
Query: 145 YALYLEHLLSTSRVLGF 161
YA YL + R + F
Sbjct: 140 YAKYLNEKSLSYRAMAF 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,316,617
Number of Sequences: 62578
Number of extensions: 333794
Number of successful extensions: 704
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 7
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)