BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018185
(359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L936|CAP16_ARATH Putative clathrin assembly protein At4g40080 OS=Arabidopsis
thaliana GN=At4g40080 PE=2 SV=2
Length = 365
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/360 (59%), Positives = 264/360 (73%), Gaps = 12/360 (3%)
Query: 3 MGRL---ANLMGIIKDKVSQSKAAIIS---KPKTLTLHLSLLRATTHDPSTPPDPKRLTT 56
MGR+ A+L+G IKDK SQSKAA++S K KTL+ HLS+LRATTHDPSTPP + L
Sbjct: 1 MGRITSFADLIGRIKDKASQSKAALVSSNTKSKTLSFHLSVLRATTHDPSTPPGNRHLAV 60
Query: 57 LLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSA 116
+LS G SRATA++ +E++M+RL TT DA VA+KSLI +HHIVKHG FILQDQLSV+P++
Sbjct: 61 ILSAGTGSRATASSAVESIMERLHTTGDACVALKSLIIIHHIVKHGRFILQDQLSVFPAS 120
Query: 117 GGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSSSSVEMDKEE 176
GGRNYLKLS FRD +PL WELSSWVRWYALYLEHLLSTSR++GFF+SS+SS++ ++ E
Sbjct: 121 GGRNYLKLSAFRDEKSPLMWELSSWVRWYALYLEHLLSTSRIMGFFISSTSSTIHKEEYE 180
Query: 177 EKVSALVNIDLLKEVDSLLSLLEQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSI 236
E VS+L N DLL+E+D+L+ LLE+ CK PD G L D I LVGEDY+S+INE+
Sbjct: 181 EMVSSLTNSDLLREIDALVGLLEEACKIPDLPFSGGKSLADKITQLVGEDYVSSINELYT 240
Query: 237 RVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHR--KRVLIEAFWGLITALKDK 294
R +EF R LS GD++EL CALKRLE CKERLS + H KR I+ FWGL+ +K
Sbjct: 241 RFNEFKERSNTLSFGDTIELVCALKRLESCKERLSEICHGNWKRGWIDGFWGLVLEVKGI 300
Query: 295 VAK-ERAYRD-ERMIVSTGRRDKASESARFGDRLSRRYGDSVRFSSARF-GFNRFPNFLV 351
+ E Y E+ IV G+RDK ESARF DRL Y + VRFSS RF +RF NF V
Sbjct: 301 IGNLEDNYGQIEKSIVGFGKRDKGYESARFTDRLIIGYSNPVRFSSGRFSNVDRF-NFPV 359
>sp|Q8H0W9|CAP17_ARATH Putative clathrin assembly protein At5g10410 OS=Arabidopsis
thaliana GN=At5g10410 PE=2 SV=2
Length = 338
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/316 (33%), Positives = 170/316 (53%), Gaps = 19/316 (6%)
Query: 4 GRLANLMGIIKDKVSQSKAAII---SKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSF 60
G +++G KDK S KA ++ +HL+LL++TT P+ PP+ ++ ++S+
Sbjct: 3 GLKTHIIGKFKDKASIGKARLVHSFGSTAVKYIHLALLKSTTRTPNKPPNSDYVSAVISY 62
Query: 61 GHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRN 120
+S A AA A + RL+ T +A VA KSLI +H ++K +D+ GRN
Sbjct: 63 SNSRYAPAA--FSAALWRLRVTKNAIVATKSLIVIHKLIKSS----RDKFEGL--GHGRN 114
Query: 121 YLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSSSSVEMDKEEEKVS 180
LKL+ F D ++ LT ELS W+RWY YL+ L +VLG F + + + +E+++VS
Sbjct: 115 NLKLNEFSDKSSNLTLELSQWIRWYGQYLDRLSWVPKVLGSFPNLLVNPKDKVEEKDRVS 174
Query: 181 ALVNIDLLKEVDSLLSLLEQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVSE 240
+ ++++ DSL+S E +C P+ + N +VD+I LV EDY + V +R+
Sbjct: 175 SYQTGYIIRQTDSLVSFFEHICTRPEIPPMFQNKIVDEIRELVIEDYFKIVRLVMVRLQV 234
Query: 241 FNNRL---GCLSLGD--SVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITALKDKV 295
RL G +GD + + L RL +CKE LS L R R L + FW L+ LK +
Sbjct: 235 LFERLIKPGVKPIGDLGLNDFSLLLVRLVECKESLSGLFWRCRRLADDFWCLVEMLKAET 294
Query: 296 AKERAYRDERMIVSTG 311
K+ +++MI G
Sbjct: 295 EKK---NNKQMIELAG 307
>sp|Q9FKQ2|CAP18_ARATH Putative clathrin assembly protein At5g65370 OS=Arabidopsis
thaliana GN=At5g65370 PE=3 SV=1
Length = 295
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 165/303 (54%), Gaps = 21/303 (6%)
Query: 3 MGRLANLMGIIKDKVSQSKAAII---SKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLS 59
MG+LA L GI+KD+ SQ K ++ S T+ L+LL+AT+H + PP K +T L S
Sbjct: 1 MGKLATLNGILKDEASQMKLNVVHLCSSVNAKTIDLALLKATSHTSNNPPSDKYVTFLQS 60
Query: 60 FGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVK-----HGSFILQDQLS--- 111
+ ++A++ RL+ T D VA K LI +H +VK +G L++ ++
Sbjct: 61 TIDT--CYGPDTVDAILHRLRVTTDVCVAAKCLILLHKMVKSESGYNGEDSLRNNINHRT 118
Query: 112 -VYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSSSSV 170
+Y + GG N LKL++ N++ T EL+ WV+WY YL+ LS + VLG + +
Sbjct: 119 LIY-TQGGSN-LKLNDLNVNSSRFTRELTPWVQWYKQYLDCYLSIAEVLGITPNIKEKNE 176
Query: 171 EMDKEEEKVSALVNIDLLKEVDSLLSLLEQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSA 230
+ E ++VS+ +LK++D L+ L E + P + N +V ++ L+ +DY SA
Sbjct: 177 DKRLETQRVSSYPMDCILKQIDFLVELFEHISDRPKAPQSKLNKIVIEMTELMVQDYFSA 236
Query: 231 INEVSIRVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITA 290
I + IR E N R + EL L++LE+CKE LS S R + LI FW L++
Sbjct: 237 IRLMRIRFEELNVR-----VAKPNELVPVLEKLENCKEGLSEFSWRSKYLIADFWYLVSK 291
Query: 291 LKD 293
LKD
Sbjct: 292 LKD 294
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis
thaliana GN=At4g25940 PE=2 SV=1
Length = 601
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 112/204 (54%), Gaps = 17/204 (8%)
Query: 10 MGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDP--KRLTTLLSFGHSSRAT 67
+G IKD + S A + S+ K L + ++++AT H S P + +R+ + S RA
Sbjct: 11 VGAIKDSTTVSIAKVNSEFKDLDV--AIVKATNHVESAPKERHIRRIFSATSVVQP-RAD 67
Query: 68 AAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNF 127
A I AL RL T + VAIK LI +H ++ G +++L Y G + L++SNF
Sbjct: 68 VAYCIHALAKRLSKTRNWVVAIKVLIVIHRTLREGDPTFREELLNYSHRG--HILRISNF 125
Query: 128 RDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFL---------SSSSSSVEMDKEEE- 177
+D+T+PL W+ S+W+R YAL+LE L RVL + + +SS +V+ + +
Sbjct: 126 KDDTSPLAWDCSAWIRTYALFLEERLECYRVLKYDIEAERLPKGSGASSKNVDFNASQTY 185
Query: 178 KVSALVNIDLLKEVDSLLSLLEQM 201
+ L + +LL+++ +L LL ++
Sbjct: 186 RTRMLSDEELLEQLPALQQLLYRL 209
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis
thaliana GN=At5g57200 PE=3 SV=1
Length = 591
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 104/195 (53%), Gaps = 9/195 (4%)
Query: 11 GIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGH--SSRATA 68
G +KD + A + S+ K L + ++++AT H +PP + + + S RA
Sbjct: 12 GALKDTTTVGLAKVNSEFKDLDI--AIVKATNHV-ESPPKERHVRKIFSATSVIQPRADV 68
Query: 69 AAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFR 128
A I AL RL T + VA+K LI +H ++ G +++L Y + R+ L++SNF+
Sbjct: 69 AYCIHALSKRLSKTRNWVVAMKVLIVIHRTLREGDPTFREELLNY--SHRRHILRISNFK 126
Query: 129 DNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSS--SSSVEMDKEEEKVSALVNID 186
D+T+PL W+ S+WVR YAL+LE L RVL + + + + + + L D
Sbjct: 127 DDTSPLAWDCSAWVRTYALFLEERLECYRVLKYDIEAERLPKASGAASKTHRTRMLSGED 186
Query: 187 LLKEVDSLLSLLEQM 201
LL+++ +L LL ++
Sbjct: 187 LLEQLPALQQLLYRL 201
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis
thaliana GN=At2g01600 PE=2 SV=2
Length = 571
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 99/174 (56%), Gaps = 8/174 (4%)
Query: 33 LHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATA--AAVIEALMDRLQTTHDASVAIK 90
L +++++AT H PP + L + + +RA A A I AL RL T + +VA+K
Sbjct: 32 LDVAIVKATNHV-ECPPKDRHLRKIFAATSVTRARADVAYCIHALSRRLHKTRNWTVALK 90
Query: 91 SLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLE 150
+LI +H +++ G +++L + S GR L+LSNF+D+++P+ W+ S+WVR YAL+LE
Sbjct: 91 TLIVIHRLLREGDPTFREELLNF-SQRGR-ILQLSNFKDDSSPIAWDCSAWVRTYALFLE 148
Query: 151 HLLSTSRVLGFFLSS---SSSSVEMDKEEEKVSALVNIDLLKEVDSLLSLLEQM 201
L RVL + + S+ DK + L +LL+++ +L LL ++
Sbjct: 149 ERLECFRVLKYDTEAERLPKSNPGQDKGYSRTRDLDGEELLEQLPALQQLLYRL 202
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis
thaliana GN=At5g35200 PE=1 SV=1
Length = 544
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 17/196 (8%)
Query: 6 LANLMGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSS- 64
L +G IKD + S A + S K L + ++++AT H P +R + S+
Sbjct: 11 LRRYLGAIKDTTTVSLAKVNSDYKELDI--AIVKATNH--VERPSKERYIRAIFMAISAT 66
Query: 65 --RATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYL 122
RA A I AL RL TH+ +VA+K+LI +H ++ +++ Y S + L
Sbjct: 67 RPRADVAYCIHALARRLSRTHNWAVALKTLIVIHRALREVDQTFHEEVINY-SRSRSHML 125
Query: 123 KLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSSSSVEMDKEEEKVSAL 182
+S+F+D++ P W S+WVR+YAL+LE L RVL + VE+D K L
Sbjct: 126 NMSHFKDDSGPNAWAYSAWVRFYALFLEERLECFRVLKY-------DVEVDPPRTK--DL 176
Query: 183 VNIDLLKEVDSLLSLL 198
DLL+++ +L LL
Sbjct: 177 DTPDLLEQLPALQELL 192
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis
thaliana GN=At1g14910 PE=2 SV=2
Length = 692
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 8/177 (4%)
Query: 33 LHLSLLRATTHDPSTPPDPK-RLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKS 91
L +++++AT H P D R L + RA A I AL RL T + +VA+K+
Sbjct: 32 LDVAIVKATNHVECPPKDRHLRKIFLATSAIRPRADVAYCIHALSRRLHKTRNWTVALKA 91
Query: 92 LIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEH 151
L+ +H +++ G +++L + S GR +++SNF+D+++P+ W+ S WVR YAL+LE
Sbjct: 92 LLVIHRLLRDGDPTFREELLNF-SQKGR-IMQISNFKDDSSPVAWDCSGWVRTYALFLEE 149
Query: 152 LLSTSRVLGFFLSSSSSSVEMDKEEEKVSALVNID---LLKEVDSLLSLLEQM--CK 203
L RVL + + + +E+ S ++D LL+++ +L LL ++ CK
Sbjct: 150 RLECFRVLKYDIEAERLPKVSPGQEKGYSKTRDLDGEKLLEQLPALQQLLHRLIGCK 206
>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650 OS=Arabidopsis
thaliana GN=At4g02650 PE=2 SV=2
Length = 611
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 83/154 (53%), Gaps = 3/154 (1%)
Query: 1 MNMGRLANLMGIIKDKVSQSKAAIISKPKTLT-LHLSLLRATTHDPSTPPDPKRLTTLLS 59
M +L +G +KD+ S A + + +LT L +++++AT HD P + K + +L
Sbjct: 1 MGSSKLKRAIGAVKDQTSVGLAKVGGRSSSLTELEIAVVKATRHD-DYPAEDKYIREILC 59
Query: 60 FGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGR 119
SR +A + L RL T + SVA+K+LI + ++ G + ++ + + G
Sbjct: 60 LTSYSRNYVSACVATLSRRLNKTKNWSVALKTLILIQRLLTDGDRAYEQEI-FFATRRGT 118
Query: 120 NYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLL 153
L +S+FRD + +W+ S++VR YALYL+ L
Sbjct: 119 RLLNMSDFRDASQSDSWDYSAFVRTYALYLDERL 152
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis
thaliana GN=At4g32285 PE=1 SV=2
Length = 635
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Query: 10 MGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAA 69
+G++KD+ S A + S L +++++AT+HD D K + +LS SR
Sbjct: 9 IGVVKDQTSIGIAKVASN-MAPDLEVAIVKATSHDDDQSSD-KYIREILSLTSLSRGYVH 66
Query: 70 AVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRD 129
A + ++ RL+ T D VA+K+L+ VH ++ G + Q+++ +Y + G L +S+FRD
Sbjct: 67 ACVTSVSRRLKKTRDWIVALKALMLVHRLLNEGDPLFQEEI-LYATRRGTRILNMSDFRD 125
Query: 130 NTTPLTWELSSWVRWYALYLEHLL 153
+W+ S++VR YA YL+ L
Sbjct: 126 EAHSSSWDHSAFVRTYASYLDQRL 149
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis
thaliana GN=At2g25430 PE=1 SV=2
Length = 653
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 7/161 (4%)
Query: 10 MGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAA 69
+G +KD+ S A + S L +++++AT+HD P K + +L+ SR
Sbjct: 9 IGAVKDQTSIGIAKVASN-MAPDLEVAIVKATSHD-DDPASEKYIREILNLTSLSRGYIL 66
Query: 70 AVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRD 129
A + ++ RL T D VA+K+L+ VH ++ G I Q+++ +Y + G L +S+FRD
Sbjct: 67 ACVTSVSRRLSKTRDWVVALKALMLVHRLLNEGDPIFQEEI-LYSTRRGTRMLNMSDFRD 125
Query: 130 NTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSSSSV 170
+W+ S++VR YA YL+ L L F S SV
Sbjct: 126 EAHSSSWDHSAFVRTYAGYLDQRLE----LALFERKSGVSV 162
>sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana
GN=AP180 PE=1 SV=1
Length = 653
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 5 RLANLMGIIKDKVSQSKAAIISKPKT----LTLHLSLLRATTHDPSTPPDPKRLTTLLSF 60
+L +G +KD+ S S A + + TL +++L+AT+HD P D + +T +L
Sbjct: 4 KLKKAIGAVKDQTSISLAKVANGATGGGDLTTLEVAILKATSHDEEVPIDDRLVTEILGI 63
Query: 61 GHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRN 120
S ++ AA+ A+ R+ T + VA+KSL+ V I + G ++ ++ G
Sbjct: 64 ISSKKSHAASCAAAIGRRIGRTRNWIVALKSLVLVLRIFQDGDPYFPREV-LHAMKRGAK 122
Query: 121 YLKLSNFRDNTTPLTWELSSWVRWYALYLEHLL 153
L LS+FRD++ W+ +++VR +ALYL+ L
Sbjct: 123 ILNLSSFRDDSNSCPWDFTAFVRTFALYLDERL 155
>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050 OS=Arabidopsis
thaliana GN=At1g03050 PE=2 SV=1
Length = 599
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 1 MNMGRLANLMGIIKDKVSQSKAAIISKPKTLT-LHLSLLRATTHDPSTPPDPKRLTTLLS 59
M + +G +KD+ S A + + +L+ L +++++AT H+ P + K + +LS
Sbjct: 1 MGSSKFKRAIGAVKDQTSVGLAKVNGRSASLSELDVAIVKATRHE-EFPAEEKYIREILS 59
Query: 60 FGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGR 119
SR+ A + L RL T +VA+K+LI + ++ G + ++ + + G
Sbjct: 60 LTSYSRSYINACVSTLSRRLNKTKCWTVALKTLILIQRLLGEGDQAYEQEI-FFATRRGT 118
Query: 120 NYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLL 153
L +S+FRD + +W+ S++VR YALYL+ L
Sbjct: 119 RLLNMSDFRDVSRSNSWDYSAFVRTYALYLDERL 152
>sp|Q9C502|CAP11_ARATH Putative clathrin assembly protein At1g33340 OS=Arabidopsis
thaliana GN=At1g33340 PE=2 SV=1
Length = 374
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 4 GRLANLMGIIKDKVSQSKAAI--ISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFG 61
+ ++G+ KD S +A + ++ + ++++RAT+HD P D K + +L
Sbjct: 7 AKFRQVLGLAKDHASIGRAIVQNYNEKAFFDIEVAVVRATSHD-DCPVDDKTMHEILFLV 65
Query: 62 HSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAG---- 117
++ + + E + RL T D VA K+L+ H +++ S ++ QL + ++G
Sbjct: 66 SNTPGSIPFLAEQISRRLAKTRDCLVAGKTLLLFHRLLRGSSRSIEQQLHIAHTSGHLQI 125
Query: 118 GRNYLKLS------NFRDNTTPLTWELSSWVRWYALYLEHLLS 154
G ++ +S F N E W+ A LE ++S
Sbjct: 126 GCSWFMMSLDSRSFVFLQNYVAYLQERVGWIINQAGKLEPVMS 168
>sp|O55012|PICA_RAT Phosphatidylinositol-binding clathrin assembly protein OS=Rattus
norvegicus GN=Picalm PE=1 SV=1
Length = 640
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 36 SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAI-KSLIA 94
++ +ATTH+ P K L L+ + + ++L +R TT+ + V + KSLI
Sbjct: 25 TVCKATTHE-IMGPKKKHLDYLIQCTNEMNVNIPQLADSLFER--TTNSSWVVVFKSLIT 81
Query: 95 VHHIVKHGSFILQDQLSVYPSAGGRNYL-KLSNFRDNTTPLTWELSSWVRWYALYLEHLL 153
HH++ +G+ L+ RN L LSNF D + +++S+++R Y+ YL
Sbjct: 82 THHLMVYGNERFIQYLA------SRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKA 135
Query: 154 STSRVLGF 161
+ R + F
Sbjct: 136 VSYRQVAF 143
>sp|Q13492|PICAL_HUMAN Phosphatidylinositol-binding clathrin assembly protein OS=Homo
sapiens GN=PICALM PE=1 SV=2
Length = 652
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 36 SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAI-KSLIA 94
++ +ATTH+ P K L L+ + + ++L +R TT+ + V + KSLI
Sbjct: 25 TVCKATTHE-IMGPKKKHLDYLIQCTNEMNVNIPQLADSLFER--TTNSSWVVVFKSLIT 81
Query: 95 VHHIVKHGSFILQDQLSVYPSAGGRNYL-KLSNFRDNTTPLTWELSSWVRWYALYLEHLL 153
HH++ +G+ L+ RN L LSNF D + +++S+++R Y+ YL
Sbjct: 82 THHLMVYGNERFIQYLA------SRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKA 135
Query: 154 STSRVLGF 161
+ R + F
Sbjct: 136 VSYRQVAF 143
>sp|O60641|AP180_HUMAN Clathrin coat assembly protein AP180 OS=Homo sapiens GN=SNAP91 PE=1
SV=2
Length = 907
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 36 SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAV 95
++ +ATTH+ P K L L+ + + + + L +R T V K+L+
Sbjct: 25 AVCKATTHE-VMGPKKKHLDYLIQATNETNVNIPQMADTLFER-ATNSSWVVVFKALVTT 82
Query: 96 HHIVKHGSFILQDQLSVYPSAGGRNYL-KLSNFRDNTTPLTWELSSWVRWYALYLEHLLS 154
HH++ HG+ L+ RN L LSNF D + +++S+++R Y+ YL
Sbjct: 83 HHLMVHGNERFIQYLA------SRNTLFNLSNFLDKSGSHGYDMSTFIRRYSRYLNEKAF 136
Query: 155 TSRVLGF 161
+ R + F
Sbjct: 137 SYRQMAF 143
>sp|Q05140|AP180_RAT Clathrin coat assembly protein AP180 OS=Rattus norvegicus GN=Snap91
PE=1 SV=1
Length = 915
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 36 SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAV 95
++ +ATTH+ P K L L+ + + + + L +R T V K+L+
Sbjct: 25 AVCKATTHE-VMGPKKKHLDYLIQATNETNVNIPQMADTLFER-ATNSSWVVVFKALVTT 82
Query: 96 HHIVKHGSFILQDQLSVYPSAGGRNYL-KLSNFRDNTTPLTWELSSWVRWYALYLEHLLS 154
HH++ HG+ L+ RN L LSNF D + +++S+++R Y+ YL
Sbjct: 83 HHLMVHGNERFIQYLA------SRNTLFNLSNFLDKSGSHGYDMSTFIRRYSRYLNEKAF 136
Query: 155 TSRVLGF 161
+ R + F
Sbjct: 137 SYRQMAF 143
>sp|Q61548|AP180_MOUSE Clathrin coat assembly protein AP180 OS=Mus musculus GN=Snap91 PE=1
SV=1
Length = 901
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 36 SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAV 95
++ +ATTH+ P K L L+ + + + + L +R T V K+L+
Sbjct: 25 AVCKATTHE-VMGPKKKHLDYLIQATNETNVNIPQMADTLFER-ATNSSWVVVFKALVTT 82
Query: 96 HHIVKHGSFILQDQLSVYPSAGGRNYL-KLSNFRDNTTPLTWELSSWVRWYALYLEHLLS 154
HH++ HG+ L+ RN L LSNF D + +++S+++R Y+ YL
Sbjct: 83 HHLMVHGNERFIQYLA------SRNTLFNLSNFLDKSGSHGYDMSTFIRRYSRYLNEKAF 136
Query: 155 TSRVLGF 161
+ R + F
Sbjct: 137 SYRQMAF 143
>sp|Q7M6Y3|PICA_MOUSE Phosphatidylinositol-binding clathrin assembly protein OS=Mus
musculus GN=Picalm PE=1 SV=1
Length = 660
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 36 SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAI-KSLIA 94
++ +ATTH+ P K L L+ + + ++L +R TT+ + V + KSLI
Sbjct: 25 TVCKATTHE-IMGPKKKHLDYLIQCTNEMNVNIPQLADSLFER--TTNSSWVVVFKSLIT 81
Query: 95 VHHIVKHGSFILQDQLSVYPSAGGRNYL-KLSNFRDNTTPLTWELSSWVRWYALYLEHLL 153
HH++ +G+ L+ RN L LSNF D + +++S+++R Y+ YL
Sbjct: 82 THHLMVYGNERFIQYLA------SRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKA 135
Query: 154 STSRVLGF 161
+ R + F
Sbjct: 136 VSYRQVAF 143
>sp|Q9VI75|PICA_DROME Phosphatidylinositol-binding clathrin assembly protein LAP
OS=Drosophila melanogaster GN=lap PE=1 SV=3
Length = 468
Score = 38.5 bits (88), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 26/186 (13%)
Query: 36 SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAV 95
S+ +ATT + P K L L+ + + + L++R Q + V KSLI
Sbjct: 27 SVCKATTEE-CIGPKKKHLDYLVHCTNEPNVSIPHLANLLIERSQNAN-WVVVYKSLITT 84
Query: 96 HHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTT--------P---LTWELSSWVRW 144
HH++ +G+ L A + LS+F D T P + +++S ++R
Sbjct: 85 HHLMAYGNERFMQYL-----ASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRR 139
Query: 145 YALYLEHLLSTSRVLGFFLSSSSSSVEMDKEEEKVSALVNIDLLKEVD----SLLSLLEQ 200
YA YL + R + F V+ KEE + ++ LLK + L +LLE
Sbjct: 140 YAKYLNEKSLSYRAMAFDF----CKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEF 195
Query: 201 MCKTPD 206
C++ D
Sbjct: 196 DCQSND 201
>sp|Q9C9X5|CAP12_ARATH Putative clathrin assembly protein At1g68110 OS=Arabidopsis
thaliana GN=At1g68110 PE=2 SV=1
Length = 379
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 33 LHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSL 92
L ++++AT+HD S+ D + + SS ++ A+ R+ T VA+KSL
Sbjct: 34 LEAAIIKATSHDDSSV-DYSNAHRVYKWIRSSPLNLKTLVYAISSRVNHTRSWIVALKSL 92
Query: 93 IAVHHIVKHGSFILQDQLSVYPSAGG---RNYLKLSNFRDNTTPL--TWELSSWVRWYAL 147
+ +H ++ PS G R LS+F D + L TW + +VR Y
Sbjct: 93 MLLHGVL----------CCKVPSVVGEFRRLPFDLSDFSDGHSCLSKTWGFNVFVRTYFA 142
Query: 148 YLEHLLSTSRVLGFFLSSSSSSVEMDK----EEEKVSALVNIDLLKEVDSLLSLLEQMCK 203
+L H S FLS + + E+ S + ++ ++++ SLL ++ Q+
Sbjct: 143 FLHHYSS-------FLSDQIHRLRGNNRRSLEKTSDSVIQELERIQKLQSLLDMILQIRP 195
Query: 204 TPD 206
D
Sbjct: 196 VAD 198
>sp|Q54FI3|PKS37_DICDI Probable polyketide synthase 37 OS=Dictyostelium discoideum GN=stlB
PE=2 SV=1
Length = 2968
Score = 33.9 bits (76), Expect = 1.8, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 165 SSSSSVEMDKEEEKVSALVNIDLLKEVDSLLSLLEQMCKTPDC--LHVRGNPLVDDIMGL 222
S SSS+ + + +KVS +VN S + ++ +PD L +R N +++ I L
Sbjct: 484 SVSSSISTNNDNDKVSNIVN----NRYGSSIDVITLSVTSPDKEDLKIRANDVLESIKTL 539
Query: 223 VGEDYLSAI-NEVSIRVSEFNNRLGCLSLGDSVE 255
+ I N +IR S F+NR+ +GDS++
Sbjct: 540 DDNFKIRDISNLTNIRTSHFSNRVAI--IGDSID 571
>sp|Q9FRH3|CAP13_ARATH Putative clathrin assembly protein At1g25240 OS=Arabidopsis
thaliana GN=At1g25240 PE=3 SV=1
Length = 376
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 20/168 (11%)
Query: 36 SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAV 95
+++ AT+HD S+ D + + SS A ++ AL R+ T VA+K+L+ V
Sbjct: 36 AIIHATSHDDSSV-DYHNAHRVYKWIRSSPANLKPLVHALSSRVNRTRSWIVALKALMLV 94
Query: 96 HHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRD-NTTP-LTWELSSWVRWYALYLEHLL 153
H ++ LQ+ R LS+F D ++ P TW ++++R Y +L+
Sbjct: 95 HGVLCCKVTSLQE--------IRRLPFDLSDFSDGHSRPSKTWGFNAFIRAYFSFLDQ-- 144
Query: 154 STSRVLGFFLSSSSSSVEMDKEEEKVSALVNIDLLKEVDSLLSLLEQM 201
FFLS + + V+ ++ ++++ SLL +L Q+
Sbjct: 145 -----YSFFLSDQIRRRHKKPQLDSVNQ--ELERIEKLQSLLHMLLQI 185
>sp|Q8RDN0|TGT_FUSNN Queuine tRNA-ribosyltransferase OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=tgt PE=3 SV=1
Length = 373
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 84 DASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWV- 142
++ + + + + +HG+ +D GR +K ++++T PL E +V
Sbjct: 262 ESGIDMMDCVQPTRLARHGTVFTKD---------GRLVIKSERYKEDTKPLDEECDCYVC 312
Query: 143 -RWYALYLEHLLSTSRVLGFFLSS 165
+ Y+ HL+ VLG L+S
Sbjct: 313 KNYSRAYIRHLIKVQEVLGLRLTS 336
>sp|Q4UK70|MNME_RICFE tRNA modification GTPase MnmE OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=mnmE PE=3 SV=1
Length = 480
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 217 DDIMGLVGEDYLSAINEVSI----RVSEFNNRLGCL--SLGDSVELACALKRLEDCKERL 270
+DIM L+ E+ ++ IN++ + ++ N+ CL S+ +++ L+ LK +E+ E +
Sbjct: 349 EDIMNLINENTITIINKIDLIEPNKIFSIENKYKCLRVSVKNNIALSSILKNIENIAENM 408
Query: 271 S 271
+
Sbjct: 409 A 409
>sp|B0U0B3|DXS_FRAP2 1-deoxy-D-xylulose-5-phosphate synthase OS=Francisella philomiragia
subsp. philomiragia (strain ATCC 25017) GN=dxs PE=3 SV=1
Length = 618
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 51 PKRLTT---LLSFGHSSRATAAAVIEALMDRLQTTHDASVAI 89
PKR + GHSS + +AA+ A+ DRLQ H +S+A+
Sbjct: 104 PKRSESEYDTFGVGHSSTSISAALGMAIADRLQGKHSSSIAV 145
>sp|Q57362|Y195A_HAEIN Uncharacterized MscS family protein HI_0195.1 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_0195.1 PE=1 SV=1
Length = 1111
Score = 32.0 bits (71), Expect = 6.9, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 37 LLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAV-IEALMDRLQTTHDASVAIKSLIAV 95
LL+A P+ DPK L+FG S+ V +E + DR TT + I L A
Sbjct: 1022 LLQAADEQPTILRDPKPSAYFLTFGASTLDHELRVYVEQVGDRTSTTDALNRRINELFAE 1081
Query: 96 HHI 98
H+I
Sbjct: 1082 HNI 1084
>sp|A8GUF3|MNME_RICB8 tRNA modification GTPase MnmE OS=Rickettsia bellii (strain OSU
85-389) GN=mnmE PE=3 SV=1
Length = 445
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 217 DDIMGLVGEDYLSAINEVSI----RVSEFNNRLGCL--SLGDSVELACALKRLEDCKERL 270
+DI GL+ E+ + IN++ + R+ N+ CL S+ +++ L LK +E+ E +
Sbjct: 314 EDITGLIDENTIVIINKIDLIPENRIFNIENKYRCLKVSIKNNIALPSILKNIEEIAENM 373
Query: 271 S 271
+
Sbjct: 374 A 374
>sp|P38856|AP18A_YEAST Clathrin coat assembly protein AP180A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YAP1801 PE=1 SV=1
Length = 637
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 31 LTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIK 90
+T + L++ T S PP K L +L G S+ +++ L R+ T ++ K
Sbjct: 1 MTTYFKLVKGATKIKSAPPKQKYLDPIL-LGTSNEEDFYEIVKGLDSRINDT-AWTIVYK 58
Query: 91 SLIAVHHIVKHGS 103
SL+ VH +++ GS
Sbjct: 59 SLLVVHLMIREGS 71
>sp|Q1RKJ6|MNME_RICBR tRNA modification GTPase MnmE OS=Rickettsia bellii (strain
RML369-C) GN=mnmE PE=3 SV=1
Length = 445
Score = 32.0 bits (71), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 217 DDIMGLVGEDYLSAINEVSI----RVSEFNNRLGCL--SLGDSVELACALKRLEDCKERL 270
+DI GL+ E+ + IN++ + R+ N+ CL S+ +++ L LK +E+ E +
Sbjct: 314 EDITGLIDENTIVIINKIDLIPENRIFNIENKYRCLKVSIKNNIALPSILKNIEEIAENM 373
Query: 271 S 271
+
Sbjct: 374 A 374
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,855,964
Number of Sequences: 539616
Number of extensions: 4771812
Number of successful extensions: 13057
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 13015
Number of HSP's gapped (non-prelim): 41
length of query: 359
length of database: 191,569,459
effective HSP length: 119
effective length of query: 240
effective length of database: 127,355,155
effective search space: 30565237200
effective search space used: 30565237200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)