Query 018185
Match_columns 359
No_of_seqs 145 out of 358
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:51:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0251 Clathrin assembly prot 100.0 2.6E-66 5.7E-71 527.0 23.4 268 8-292 1-274 (491)
2 PF07651 ANTH: ANTH domain; I 100.0 7.8E-52 1.7E-56 395.6 22.0 239 32-279 3-250 (280)
3 cd03564 ANTH_AP180_CALM ANTH d 100.0 3.4E-32 7.4E-37 230.0 12.1 117 33-156 1-117 (117)
4 smart00273 ENTH Epsin N-termin 99.9 3.8E-28 8.2E-33 207.8 9.1 125 32-162 2-126 (127)
5 KOG0980 Actin-binding protein 99.7 2.7E-17 5.9E-22 173.5 13.4 219 32-279 6-244 (980)
6 PF01417 ENTH: ENTH domain; I 99.3 2.3E-11 4.9E-16 103.9 8.9 116 32-154 3-120 (125)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.2 5.8E-11 1.3E-15 99.6 7.7 112 34-153 2-113 (115)
8 cd03571 ENTH_epsin ENTH domain 98.9 3.8E-09 8.2E-14 90.6 8.0 113 33-153 2-116 (123)
9 cd03572 ENTH_epsin_related ENT 98.1 9E-06 1.9E-10 69.7 7.7 112 36-153 5-117 (122)
10 KOG2056 Equilibrative nucleosi 97.9 3.2E-05 7E-10 76.3 8.4 130 10-153 5-136 (336)
11 cd03568 VHS_STAM VHS domain fa 95.8 0.041 9E-07 48.4 8.0 75 34-110 2-76 (144)
12 cd03567 VHS_GGA VHS domain fam 95.7 0.054 1.2E-06 47.5 8.0 76 33-110 2-77 (139)
13 PF00790 VHS: VHS domain; Int 95.6 0.038 8.3E-07 48.0 6.7 77 32-110 5-81 (140)
14 cd03565 VHS_Tom1 VHS domain fa 95.6 0.069 1.5E-06 46.8 8.3 77 33-110 2-78 (141)
15 cd03569 VHS_Hrs_Vps27p VHS dom 95.4 0.086 1.9E-06 46.2 8.2 77 32-110 4-80 (142)
16 smart00288 VHS Domain present 95.2 0.1 2.2E-06 45.1 8.1 75 34-110 2-76 (133)
17 cd03561 VHS VHS domain family; 95.2 0.1 2.2E-06 44.9 8.0 75 34-110 2-76 (133)
18 KOG2057 Predicted equilibrativ 93.2 0.13 2.8E-06 50.9 4.9 113 32-150 23-138 (499)
19 KOG2199 Signal transducing ada 82.3 4.5 9.8E-05 41.3 7.2 77 32-110 8-84 (462)
20 KOG1087 Cytosolic sorting prot 57.4 32 0.00069 36.1 7.0 76 33-110 2-77 (470)
21 smart00040 CSF2 Granulocyte-ma 25.3 1.6E+02 0.0034 25.1 4.8 67 214-303 17-86 (121)
22 TIGR02606 antidote_CC2985 puta 24.6 75 0.0016 24.4 2.7 44 47-92 7-50 (69)
23 KOG3364 Membrane protein invol 24.0 3.6E+02 0.0078 24.0 7.1 85 215-303 35-121 (149)
24 PF04136 Sec34: Sec34-like fam 23.7 5.1E+02 0.011 22.9 8.9 91 186-277 18-118 (157)
25 PF04405 ScdA_N: Domain of Unk 23.1 1.1E+02 0.0023 22.6 3.2 41 153-195 16-56 (56)
26 PRK10947 global DNA-binding tr 21.5 46 0.001 29.1 1.1 19 46-66 92-113 (135)
27 COG4103 Uncharacterized protei 21.4 5.9E+02 0.013 22.7 10.5 57 229-289 47-113 (148)
No 1
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-66 Score=526.98 Aligned_cols=268 Identities=32% Similarity=0.425 Sum_probs=245.0
Q ss_pred HHHHhhhhccchhhhhhcCCCCccchhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhH
Q 018185 8 NLMGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASV 87 (359)
Q Consensus 8 ~~~g~lKD~asi~~A~~~~~~~~~dl~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~V 87 (359)
+++|++||++|+++|++++ ...++++||+|||||++ .|||+|||++||.+|+++++++++||++|++||++|+||+|
T Consensus 1 ~~~gaiKD~~s~~~a~v~~--~~~~l~~AV~KATsh~~-~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~V 77 (491)
T KOG0251|consen 1 RAIGAIKDRTSIGKASVAS--AGSDLEKAVVKATSHDD-MPPKDKYLDEILSATSSSPASIPSCVHALSERLNKTRNWTV 77 (491)
T ss_pred CCccccchhhhhHHHHhhh--hhhhHHHHHHhhccCCC-CCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceee
Confidence 4789999999999999986 34489999999999997 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcchHHHhhhccCCCCCCceeccCCCCCCCCCccchhHHHHHHHHHHHHHHhhhhhcccccccCC
Q 018185 88 AIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSS 167 (359)
Q Consensus 88 alKaLIviH~LlreG~~~f~d~l~~y~s~~g~~~L~Ls~F~D~ss~~s~~~s~~VR~Ya~YLdeRl~~~r~l~~d~~~~~ 167 (359)
||||||+||+||++|++.|.+++..+ +..|+|++|+|++++.+||+++|||||+.||+||+.+|+.+++|++.++
T Consensus 78 AlKsLIliH~ll~~G~~~f~~~l~~~-----~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~ 152 (491)
T KOG0251|consen 78 ALKALILIHRLLKEGDPSFEQELLSR-----NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVK 152 (491)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHhc-----ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999533 3679999999999989999999999999999999999999999998764
Q ss_pred CCcccchhhhhhhccC-hHHHHHHHHHHHHHHHHh-ccCCCCcCCCCcHHHHHHHHHHHHH---HHHHHHHHHH-HHhhh
Q 018185 168 SSVEMDKEEEKVSALV-NIDLLKEVDSLLSLLEQM-CKTPDCLHVRGNPLVDDIMGLVGED---YLSAINEVSI-RVSEF 241 (359)
Q Consensus 168 s~~~~~~~~~~~~~L~-~~~LL~~l~~LQ~lid~l-~~~p~~~~~~~N~lI~~af~Ll~~D---ly~~inEgvi-lLe~f 241 (359)
.+. ....++++. ++.+|++++.||.|||++ +|+|.+.+ .+|.||++||.||++| +|+++||||| +||+|
T Consensus 153 ~~~----~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~-~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekf 227 (491)
T KOG0251|consen 153 RGK----EKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSA-LNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKF 227 (491)
T ss_pred Ccc----cccccccccchHHHHHHHHHHHHHHHHHHcCCCCchh-hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 331 122334444 678999999999999995 99999985 9999999999999999 7999999999 99999
Q ss_pred hccccCCChhhHHHHHHHHHHHHHhhhhHHhhhHHHHHHhHhHHHHHHHHH
Q 018185 242 NNRLGCLSLGDSVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITALK 292 (359)
Q Consensus 242 fEm~~~l~~~dA~~aL~iyKrf~~qtE~l~~f~~~~k~~~~~~w~~~~~~k 292 (359)
|||. ++||.++|+|||||.+|+|+|++||++||.+--+.|..+-.+|
T Consensus 228 fem~----~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~ 274 (491)
T KOG0251|consen 228 FEMS----KHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLK 274 (491)
T ss_pred hhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchh
Confidence 9985 6999999999999999999999999999998888898888888
No 2
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=100.00 E-value=7.8e-52 Score=395.58 Aligned_cols=239 Identities=26% Similarity=0.350 Sum_probs=186.2
Q ss_pred chhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHhh
Q 018185 32 TLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLS 111 (359)
Q Consensus 32 dl~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l~ 111 (359)
++++||+|||+|++ +|||+|||++||.+|++ +.+++.++++|++|++.|++|+||+||||++|+|||+|+|.|.+++.
T Consensus 3 ~l~~av~KAT~~~~-~ppk~Khv~~il~~t~~-~~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~~~ 80 (280)
T PF07651_consen 3 DLEKAVIKATSHDE-APPKEKHVREILSATSS-PESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQELL 80 (280)
T ss_dssp HHHHHHHHHT-SSS----HHHHHHHHHHHCST-TS-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred HHHHHHHHHcCCCC-CCCCHHHHHHHHHHhcC-CccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 79999999999988 99999999999999999 88899999999999999999999999999999999999999998886
Q ss_pred hccCCCCCCceeccCCCCCCCCCccchhHHHHHHHHHHHHHHhhhhhcccc---cccCCCCcccchhhhhh-hccChHHH
Q 018185 112 VYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFF---LSSSSSSVEMDKEEEKV-SALVNIDL 187 (359)
Q Consensus 112 ~y~s~~g~~~L~Ls~F~D~ss~~s~~~s~~VR~Ya~YLdeRl~~~r~l~~d---~~~~~s~~~~~~~~~~~-~~L~~~~L 187 (359)
.+.. .+....++.+| |++++.+|+++.|||+|++||++|+.+|+.++.+ ++.+.........+... ..+++++|
T Consensus 81 ~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (280)
T PF07651_consen 81 RYNR-RLFDLSNIWDF-DDSSSKSWDYSAFIRAYAKYLDERLSFHRKLKIDPGNLEREEEGSLVSRDDPNSRKSLDIDDL 158 (280)
T ss_dssp HTT------TT---T----SSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCCS--S-----TTSHCC-C--HHHH
T ss_pred Hccc-chhhhcccccc-ccCCccccchhHHHHHHHHHHHHHHHHHHHccccccccccccccccccccCccccccccHHHH
Confidence 5532 23333344445 4777889999999999999999999999999988 44432110000111112 36677899
Q ss_pred HHHHHHHHHHHHH-hccCCCCcCCCCcHHHHHHHHHHHHH---HHHHHHHHHH-HHhhhhccccCCChhhHHHHHHHHHH
Q 018185 188 LKEVDSLLSLLEQ-MCKTPDCLHVRGNPLVDDIMGLVGED---YLSAINEVSI-RVSEFNNRLGCLSLGDSVELACALKR 262 (359)
Q Consensus 188 L~~l~~LQ~lid~-l~~~p~~~~~~~N~lI~~af~Ll~~D---ly~~inEgvi-lLe~ffEm~~~l~~~dA~~aL~iyKr 262 (359)
|++++.||+++++ +.|+|.+.. .+|+++++||.+|++| +|+++|+|++ ++++||||. +.||.+++++|+|
T Consensus 159 L~~l~~lq~ll~~ll~~~~~~~~-~~n~~~~~a~~lli~Ds~~lY~~i~~~i~~Ll~~~~~m~----~~~a~~~~~i~~r 233 (280)
T PF07651_consen 159 LDQLPKLQRLLDRLLDCRPRGAA-LNNQCVQAAFRLLIKDSFQLYKFINEGIINLLERFFEMS----KPDAEKLLGIYKR 233 (280)
T ss_dssp HHHHHHHHHHHHHHHTT---GGG---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHH
Confidence 9999999999999 599999985 8899999999999999 8999999999 999999985 5999999999999
Q ss_pred HHHhhhhHHhhhHHHHH
Q 018185 263 LEDCKERLSVLSHRKRV 279 (359)
Q Consensus 263 f~~qtE~l~~f~~~~k~ 279 (359)
|.+|+|+|..||++||.
T Consensus 234 f~~q~~~L~~Fy~~c~~ 250 (280)
T PF07651_consen 234 FAKQTEELKEFYEWCKS 250 (280)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999998
No 3
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.98 E-value=3.4e-32 Score=230.04 Aligned_cols=117 Identities=32% Similarity=0.508 Sum_probs=108.7
Q ss_pred hhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHhhh
Q 018185 33 LHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSV 112 (359)
Q Consensus 33 l~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l~~ 112 (359)
+++||.|||+|++ +|||+|||++|+.+|++++.++++++++|.+|+++ +||+||+||||++|+||++|+|.+.++...
T Consensus 1 ~~~aV~kAT~~~~-~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~-~~w~v~~K~LillH~llr~G~~~~~~~~~~ 78 (117)
T cd03564 1 LEKAVKKATSHDE-APPKDKHVRKIIAGTSSSPASIPSFASALSRRLLD-RNWVVVLKALILLHRLLREGHPSFLQELLS 78 (117)
T ss_pred CchHHHhhcCCCC-CCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5789999999997 99999999999999999889999999999999997 899999999999999999999999888742
Q ss_pred ccCCCCCCceeccCCCCCCCCCccchhHHHHHHHHHHHHHHhhh
Q 018185 113 YPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTS 156 (359)
Q Consensus 113 y~s~~g~~~L~Ls~F~D~ss~~s~~~s~~VR~Ya~YLdeRl~~~ 156 (359)
..++|++++|.|.+++.+|+++.|||+|++||++|+.+|
T Consensus 79 -----~~~~l~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl~~~ 117 (117)
T cd03564 79 -----RRGWLNLSNFLDKSSSLGYGYSAFIRAYARYLDERLSFH 117 (117)
T ss_pred -----ccCeeeccccccCCCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 257899999999987788999999999999999999864
No 4
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=99.95 E-value=3.8e-28 Score=207.77 Aligned_cols=125 Identities=26% Similarity=0.327 Sum_probs=112.5
Q ss_pred chhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHhh
Q 018185 32 TLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLS 111 (359)
Q Consensus 32 dl~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l~ 111 (359)
+++++|.|||+|++ .|||+||+++|+.+|++++.++++++.+|.+||.++++|+||+|||+++|+||++|++.+.++..
T Consensus 2 ~~e~~V~kAT~~~~-~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~~~ 80 (127)
T smart00273 2 DLEVKVRKATNNDE-WGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILEAL 80 (127)
T ss_pred HHHHHHHHhcCCCC-CCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 68999999999998 99999999999999999988899999999999998889999999999999999999997765542
Q ss_pred hccCCCCCCceeccCCCCCCCCCccchhHHHHHHHHHHHHHHhhhhhcccc
Q 018185 112 VYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFF 162 (359)
Q Consensus 112 ~y~s~~g~~~L~Ls~F~D~ss~~s~~~s~~VR~Ya~YLdeRl~~~r~l~~d 162 (359)
+ ++..+++|++|.+. ++.++|++.|||.||+||++++..++.++.+
T Consensus 81 ---~-~~~~i~~L~~f~~~-~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~e 126 (127)
T smart00273 81 ---R-NRNRILNLSDFQDI-DSRGKDQGANIRTYAKYLLERLEDDRRLKEE 126 (127)
T ss_pred ---H-hhHHHhhHhhCeec-CCCCeeCcHHHHHHHHHHHHHHcCHHHHhcc
Confidence 2 24578899999987 5688999999999999999999998877643
No 5
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=99.73 E-value=2.7e-17 Score=173.54 Aligned_cols=219 Identities=16% Similarity=0.144 Sum_probs=157.4
Q ss_pred chhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcc-hHHHh
Q 018185 32 TLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFI-LQDQL 110 (359)
Q Consensus 32 dl~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~-f~d~l 110 (359)
+...||-||+|.++ +|||+||++.||.+||...+ +.+++....|+.=.++.+..+|.++++|++||+|||. +.|..
T Consensus 6 ~q~~av~KAis~~E-t~~K~KH~Rt~I~gTh~eks--a~~FWt~ik~~PL~~~~VltwKfchllHKvLreGHpsal~es~ 82 (980)
T KOG0980|consen 6 AQLEAVQKAISKDE-TPPKRKHVRTIIVGTHDEKS--SKIFWTTIKRQPLENHEVLTWKFCHLLHKVLREGHPSALEESQ 82 (980)
T ss_pred HHHHHHHHHhcccc-CCCchhhhhheeeeeccccc--chhHHHHhhccccccchHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence 57789999999999 99999999999999998765 3467777789887789999999999999999999996 44433
Q ss_pred hhccCCCCCCceeccCCCCCCCCCccchhHHHHHHHHHHHHHHhhhhhccccc-----ccC---CCCcccchhhhhhhcc
Q 018185 111 SVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFL-----SSS---SSSVEMDKEEEKVSAL 182 (359)
Q Consensus 111 ~~y~s~~g~~~L~Ls~F~D~ss~~s~~~s~~VR~Ya~YLdeRl~~~r~l~~d~-----~~~---~s~~~~~~~~~~~~~L 182 (359)
.| ..++..++.+-+.-+ -+|+..||.|.+||-.|+.++..+..+. ... ..+.|.+++.+.+-+
T Consensus 83 -r~----r~~i~~l~r~w~~ls---~~Yg~lI~~Y~klL~~Kl~FH~k~p~FpGtle~s~~~l~~av~D~n~~feltvd- 153 (980)
T KOG0980|consen 83 -RY----KKWITQLGRMWGHLS---DGYGPLIRAYVKLLHDKLSFHAKHPVFPGTLEYSDYQLLTAVDDLNNGFELTVD- 153 (980)
T ss_pred -HH----HHHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHhHhhcCCCCCCCccccHHHHHHHhccHHHHHHHHHH-
Confidence 22 123445777544322 5789999999999999999877664322 111 233456666654433
Q ss_pred ChHHHHHHHHHHHHHHHH-hc------cCCCCcCCCCcHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhccccCCChhh
Q 018185 183 VNIDLLKEVDSLLSLLEQ-MC------KTPDCLHVRGNPLVDDIMGLVGED---YLSAINEVSIRVSEFNNRLGCLSLGD 252 (359)
Q Consensus 183 ~~~~LL~~l~~LQ~lid~-l~------~~p~~~~~~~N~lI~~af~Ll~~D---ly~~inEgvilLe~ffEm~~~l~~~d 252 (359)
+.++++.+..||..|+. +. ..|.|.| .+. ++-.|+.| +|..+--++ |-|-.|+. .|
T Consensus 154 -mmd~~D~ll~lq~~vF~s~~s~r~~s~t~qgqC-----rla-pLI~lIqds~~lY~y~vkml------fkLHs~vp-~d 219 (980)
T KOG0980|consen 154 -MMDYMDSLLELQQTVFSSMNSSRWVSLTPQGQC-----RLA-PLIPLIQDSSGLYDYLVKML------FKLHSQVP-PD 219 (980)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhccccccCCCcce-----ehh-HHHHHHHhhhhHHHHHHHHH------HHHHcCCC-HH
Confidence 36899999999999998 64 3344433 344 44445555 676654443 44433454 33
Q ss_pred HHHHHHHH-HHHHHhhhhHHhhhHHHHH
Q 018185 253 SVELACAL-KRLEDCKERLSVLSHRKRV 279 (359)
Q Consensus 253 A~~aL~iy-Krf~~qtE~l~~f~~~~k~ 279 (359)
+|+-+ -||..|-++|-.||+.|.+
T Consensus 220 ---tLeghRdRf~~qf~rLk~FY~~~S~ 244 (980)
T KOG0980|consen 220 ---TLEGHRDRFHTQFERLKQFYADCSN 244 (980)
T ss_pred ---HhhhHHHHHHHHHHHHHHHHHhcch
Confidence 44444 5899999999999999988
No 6
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=99.26 E-value=2.3e-11 Score=103.86 Aligned_cols=116 Identities=24% Similarity=0.259 Sum_probs=92.1
Q ss_pred chhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHh--CcCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 018185 32 TLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRL--QTTHDASVAIKSLIAVHHIVKHGSFILQDQ 109 (359)
Q Consensus 32 dl~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL--~~T~~W~ValKaLIviH~LlreG~~~f~d~ 109 (359)
++++-|.+||+.++ .||+.+++..|...|+++ .....+++.|.+|| .+.++|.+++|||.++|.|+++|++.|.+.
T Consensus 3 ~~e~~v~eAT~~d~-~gp~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~ 80 (125)
T PF01417_consen 3 ELELKVREATSNDP-WGPPGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDE 80 (125)
T ss_dssp HHHHHHHHHTSSSS-SS--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred HHHHHHHHHcCCCC-CCcCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHH
Confidence 57889999999998 899999999999999998 67889999999999 346899999999999999999999999888
Q ss_pred hhhccCCCCCCceeccCCCCCCCCCccchhHHHHHHHHHHHHHHh
Q 018185 110 LSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLS 154 (359)
Q Consensus 110 l~~y~s~~g~~~L~Ls~F~D~ss~~s~~~s~~VR~Ya~YLdeRl~ 154 (359)
+.... ...-.|.+|.. .++.+.+.+.-||..|+-+-+.+.
T Consensus 81 ~~~~~----~~I~~l~~f~~-~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 81 LRDHI----DIIRELQDFQY-VDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHHTH----HHHHGGGG----BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHH----HHHhhcceeec-cCCCCccHHHHHHHHHHHHHHHhC
Confidence 84321 12334777876 334667888889999999888774
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.18 E-value=5.8e-11 Score=99.61 Aligned_cols=112 Identities=20% Similarity=0.259 Sum_probs=90.0
Q ss_pred hhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHhhhc
Q 018185 34 HLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVY 113 (359)
Q Consensus 34 ~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l~~y 113 (359)
+..|.|||+++. .+|+.+++.+|...++..+..+.+++++|.+||+. ++|.|++|+|.++|.++..|++.|.+++.
T Consensus 2 ~~~v~~AT~~~~-~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~-~~~~~~lkaL~lLe~lvkN~g~~f~~~i~-- 77 (115)
T cd00197 2 EKTVEKATSNEN-MGPDWPLIMEICDLINETNVGPKEAVDAIKKRINN-KNPHVVLKALTLLEYCVKNCGERFHQEVA-- 77 (115)
T ss_pred hHHHHHHcCCCC-CCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHHHHHHHH--
Confidence 457899999986 88999999999999998877789999999999986 69999999999999999999999998874
Q ss_pred cCCCCCCceeccCCCCCCCCCccchhHHHHHHHHHHHHHH
Q 018185 114 PSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLL 153 (359)
Q Consensus 114 ~s~~g~~~L~Ls~F~D~ss~~s~~~s~~VR~Ya~YLdeRl 153 (359)
+ ..-..++..| +.....+.+.+..||.++.+|-+-.
T Consensus 78 -~--~~~~~~l~~~-~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 78 -S--NDFAVELLKF-DKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred -H--hHHHHHHHHh-hccccccCCCChHHHHHHHHHHHHH
Confidence 2 1122334444 2222234566799999999997653
No 8
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=98.92 E-value=3.8e-09 Score=90.55 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=86.8
Q ss_pred hhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcC-CChhHHHHHHHHHHHHHhcCCcchHHHhh
Q 018185 33 LHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTT-HDASVAIKSLIAVHHIVKHGSFILQDQLS 111 (359)
Q Consensus 33 l~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T-~~W~ValKaLIviH~LlreG~~~f~d~l~ 111 (359)
.++.|..||+.++ .+|..+++.+|-.+|++. ..+..++..|-+||.+. ++|.+++|||++++.||++|++.+.+++.
T Consensus 2 ~e~~vreATs~d~-wGp~~~~m~eIa~~t~~~-~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r 79 (123)
T cd03571 2 AELKVREATSNDP-WGPSGTLMAEIARATYNY-VEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDAR 79 (123)
T ss_pred HHHHHHHHcCCCC-CCCCHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5677889999998 999999999999999986 45789999999999754 69999999999999999999998877663
Q ss_pred hccCCCCCCcee-ccCCCCCCCCCccchhHHHHHHHHHHHHHH
Q 018185 112 VYPSAGGRNYLK-LSNFRDNTTPLTWELSSWVRWYALYLEHLL 153 (359)
Q Consensus 112 ~y~s~~g~~~L~-Ls~F~D~ss~~s~~~s~~VR~Ya~YLdeRl 153 (359)
. +...+. |..|.-. +..+.|.+..||.=|.-+-+.+
T Consensus 80 ~-----~~~~i~~L~~F~~~-d~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 80 E-----NLYIIRTLKDFQYI-DENGKDQGINVREKAKEILELL 116 (123)
T ss_pred H-----hHHHHHhhccceee-CCCCCchhHHHHHHHHHHHHHh
Confidence 1 111222 4555432 1233467788887776665554
No 9
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=98.13 E-value=9e-06 Score=69.69 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=86.7
Q ss_pred hhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHhhhccC
Q 018185 36 SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPS 115 (359)
Q Consensus 36 AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l~~y~s 115 (359)
.|.+||+-++..||-..| .+|-..|+.+...+.++++.|.+||++ ++-.|-+|||=+|-++++.|++.|+..+...+.
T Consensus 5 ll~~ATsdd~~p~pgy~~-~Eia~~t~~s~~~~~ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~ 82 (122)
T cd03572 5 LLSKATSDDDEPTPGYLY-EEIAKLTRKSVGSCQELLEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSA 82 (122)
T ss_pred HHHHHhcCCCCCCchHHH-HHHHHHHHcCHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHH
Confidence 367899998855555555 578899999888899999999999996 578888999999999999999999887753321
Q ss_pred CCCCCceeccCCCCCCCC-CccchhHHHHHHHHHHHHHH
Q 018185 116 AGGRNYLKLSNFRDNTTP-LTWELSSWVRWYALYLEHLL 153 (359)
Q Consensus 116 ~~g~~~L~Ls~F~D~ss~-~s~~~s~~VR~Ya~YLdeRl 153 (359)
..-.+.+|+..-++ .+.+.+..||.=|+=|-.-+
T Consensus 83 ----~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 83 ----QIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred ----HHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 23346778775444 66778889997776665544
No 10
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=97.93 E-value=3.2e-05 Score=76.30 Aligned_cols=130 Identities=18% Similarity=0.138 Sum_probs=94.3
Q ss_pred HHhhhhccchhhhhhcCCCCccchhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCc-CCChhHH
Q 018185 10 MGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQT-THDASVA 88 (359)
Q Consensus 10 ~g~lKD~asi~~A~~~~~~~~~dl~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~-T~~W~Va 88 (359)
+..+|.+++-..-.+ .+.++.|.-||+-+. -.|..+++..|-.+|+... .+.+|+.-|-+|+.+ -++|..|
T Consensus 5 ~~~l~Rqakn~v~~y------~~~e~kVrdAT~nd~-wGPs~~lm~eIA~~ty~~~-e~~eIm~vi~kRl~d~gknWR~V 76 (336)
T KOG2056|consen 5 FRDLKRQAKNFIKNY------SEAELKVRDATSNDP-WGPSGTLMAEIAQATYNFV-EYQEIMDVLWKRLNDSGKNWRHV 76 (336)
T ss_pred HHHHHHHHHHHHhcc------hHHHHHHHhcccccc-CCCchHHHHHHHHHhcCHH-HHHHHHHHHHHHHhhccchHHHH
Confidence 345666666654332 257899999999998 6899999999999999974 478999999999973 3679999
Q ss_pred HHHHHHHHHHHhcCCcchHHHhhhccCCCCCCcee-ccCCCCCCCCCccchhHHHHHHHHHHHHHH
Q 018185 89 IKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLK-LSNFRDNTTPLTWELSSWVRWYALYLEHLL 153 (359)
Q Consensus 89 lKaLIviH~LlreG~~~f~d~l~~y~s~~g~~~L~-Ls~F~D~ss~~s~~~s~~VR~Ya~YLdeRl 153 (359)
||||.||-.||..|++.+.+++.. +.-... |..|.--. ..+.+.+..||.=|.=|-..|
T Consensus 77 yKaLtlleyLl~~GSErv~~~~re-----n~~~I~tL~~Fq~iD-~~G~dqG~nVRkkak~l~~LL 136 (336)
T KOG2056|consen 77 YKALTLLEYLLKNGSERVVDETRE-----NIYTIETLKDFQYID-EDGKDQGLNVRKKAKELLSLL 136 (336)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHh-----hhHHHHHHhhceeeC-CCCccchHHHHHHHHHHHHHh
Confidence 999999999999999988876621 111112 44454321 233556677887776554433
No 11
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.85 E-value=0.041 Score=48.40 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=65.5
Q ss_pred hhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHh
Q 018185 34 HLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQL 110 (359)
Q Consensus 34 ~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l 110 (359)
+..|.|||+... .-|+--++-.|-...++......+++++|.+||+. +|..|++.+|.++--++..+...|..++
T Consensus 2 e~~iekATse~l-~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 2 DDLVEKATDEKL-TSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNH-KDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred hHHHHHHcCccC-CCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 456899999987 67888888888887777667778999999999985 7999999999999999999998888777
No 12
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=95.67 E-value=0.054 Score=47.45 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=67.3
Q ss_pred hhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHh
Q 018185 33 LHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQL 110 (359)
Q Consensus 33 l~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l 110 (359)
++.-|.|||+..- .-|+--++-.|-...+..+....+++++|.+||+ .+|-.|++-+|-++--++..+.+.|..++
T Consensus 2 ~~~~iekAT~~~l-~~~dw~~ileicD~In~~~~~~k~a~rai~krl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 77 (139)
T cd03567 2 LEAWLNKATNPSN-REEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQ-SPQEKEALQALTVLEACMKNCGERFHSEV 77 (139)
T ss_pred HHHHHHHHcCccC-CCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 6677999999886 7899999999988888776777899999999998 57999999999999999999988888777
No 13
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.57 E-value=0.038 Score=47.99 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=65.2
Q ss_pred chhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHh
Q 018185 32 TLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQL 110 (359)
Q Consensus 32 dl~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l 110 (359)
.++..|.|||++.. .-|+--.+-.|....+.++....+++++|.+||.. ++--|++-||.++.-++..+.+.|..++
T Consensus 5 ~~~~li~kATs~~~-~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~f~~ev 81 (140)
T PF00790_consen 5 SITELIEKATSESL-PSPDWSLILEICDLINSSPDGAKEAARALRKRLKH-GNPNVQLLALTLLDALVKNCGPRFHREV 81 (140)
T ss_dssp HHHHHHHHHT-TTS-SS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred hHHHHHHHHhCcCC-CCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 58889999999987 66787887778888777777778999999999986 8999999999999999999998888777
No 14
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=95.57 E-value=0.069 Score=46.79 Aligned_cols=77 Identities=13% Similarity=0.098 Sum_probs=66.5
Q ss_pred hhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHh
Q 018185 33 LHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQL 110 (359)
Q Consensus 33 l~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l 110 (359)
++..|-|||+... .-|+--++=.|-...++......+++++|.+||...++-.|++-||-++=-++..+...|..++
T Consensus 2 ~~~~IekATse~l-~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 2 VGQLIEKATDGSL-QSEDWGLNMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HhHHHHHHcCcCC-CCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4567999999987 6788888888888887776777899999999997557899999999999999999998888777
No 15
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.37 E-value=0.086 Score=46.24 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=67.3
Q ss_pred chhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHh
Q 018185 32 TLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQL 110 (359)
Q Consensus 32 dl~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l 110 (359)
.++..|-|||+... .-|+--.+-.|....+..+....+++++|.+||.. +|-.|++-+|-++--++..+...|..++
T Consensus 4 ~~~~~I~kATs~~l-~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~-~n~~vql~AL~LLe~~vkNCG~~fh~ev 80 (142)
T cd03569 4 EFDELIEKATSELL-GEPDLASILEICDMIRSKDVQPKYAMRALKKRLLS-KNPNVQLYALLLLESCVKNCGTHFHDEV 80 (142)
T ss_pred hHHHHHHHHcCccc-CccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 57889999999876 77898888888888877777778999999999985 8999999999999999999887777666
No 16
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=95.20 E-value=0.1 Score=45.07 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=64.4
Q ss_pred hhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHh
Q 018185 34 HLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQL 110 (359)
Q Consensus 34 ~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l 110 (359)
+.-|.|||+... .-|+--.+-.|-...+..+....+++++|.+||. .++-.|++.+|.++=-++..+.+.|..++
T Consensus 2 ~~~i~kATs~~l-~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev 76 (133)
T smart00288 2 ERLIDKATSPSL-LEEDWELILEICDLINSTPDGPKDAVRLLKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEV 76 (133)
T ss_pred hhHHHHHcCcCC-CCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 456899999886 6788888888888887777777899999999998 58999999999999999999887777666
No 17
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=95.19 E-value=0.1 Score=44.94 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=65.3
Q ss_pred hhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHh
Q 018185 34 HLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQL 110 (359)
Q Consensus 34 ~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l 110 (359)
+..|.|||+... .-|+--.+-+|-...+..+....+++++|.+||.. ++-.|++-+|.++=-++..+.+.|..++
T Consensus 2 ~~~I~kATs~~~-~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~-~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 2 TSLIERATSPSL-EEPDWALNLELCDLINLKPNGPKEAARAIRKKIKY-GNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred hHHHHHHcCccc-CCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 346889999765 67898888888888888777788999999999985 7999999999999999999988887666
No 18
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=93.19 E-value=0.13 Score=50.93 Aligned_cols=113 Identities=16% Similarity=0.131 Sum_probs=80.7
Q ss_pred chhhhhhhcCCCCCCCCCChhhHHHHHHhccCC-cccHHHHHHHHHHHhC-c-CCChhHHHHHHHHHHHHHhcCCcchHH
Q 018185 32 TLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSS-RATAAAVIEALMDRLQ-T-THDASVAIKSLIAVHHIVKHGSFILQD 108 (359)
Q Consensus 32 dl~~AIvKATth~~~~pPK~KhV~~IL~~t~~s-~~~~~~~v~aL~~RL~-~-T~~W~ValKaLIviH~LlreG~~~f~d 108 (359)
+++.-|..||+.|+ -.|.---+.+|-.+|... ...++++...|..|+- + -.+|.-|+|+||++--||+.|.+.|.+
T Consensus 23 e~e~~VREATNdDP-WGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER~Vq 101 (499)
T KOG2057|consen 23 EAEMDVREATNDDP-WGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSERFVQ 101 (499)
T ss_pred HHHHHHHhhccCCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 57778889999987 778888889998888762 2457889999998863 2 236999999999999999999998877
Q ss_pred HhhhccCCCCCCceeccCCCCCCCCCccchhHHHHHHHHHHH
Q 018185 109 QLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLE 150 (359)
Q Consensus 109 ~l~~y~s~~g~~~L~Ls~F~D~ss~~s~~~s~~VR~Ya~YLd 150 (359)
+-..... ..+-|.--+|-|.. +-|++-.||.-..-|-
T Consensus 102 eAREh~Y--dLR~LEnYhfiDEh---GKDQGINIR~kVKeil 138 (499)
T KOG2057|consen 102 EAREHAY--DLRRLENYHFIDEH---GKDQGINIRHKVKEIL 138 (499)
T ss_pred HHHHHHH--HHHhhhhccchhhh---CccccccHHHHHHHHH
Confidence 5532111 11224444567763 3456667776655553
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=82.28 E-value=4.5 Score=41.33 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=56.4
Q ss_pred chhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHh
Q 018185 32 TLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQL 110 (359)
Q Consensus 32 dl~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l 110 (359)
.++-.|.|||...- +.=+=-+|=.+-.-..+.+....+|+.+|++||. +++.-|++-+|-++--+.......|+.++
T Consensus 8 ~~e~~v~KAT~e~n-T~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln-~~dphV~L~AlTLlda~~~NCg~~~r~EV 84 (462)
T KOG2199|consen 8 PFEQDVEKATDEKN-TSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLN-HKDPHVVLQALTLLDACVANCGKRFRLEV 84 (462)
T ss_pred hHHHHHHHhcCccc-ccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHhcchHHHHHH
Confidence 48889999998765 4333334333333334444556899999999997 57999999999999988888777777666
No 20
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.43 E-value=32 Score=36.15 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=59.5
Q ss_pred hhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHh
Q 018185 33 LHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQL 110 (359)
Q Consensus 33 l~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l 110 (359)
+...|-|||+-.- .-|+=-..=+|=...+.......+++++|-+||+. ++-.|++=+|-++-.++......|..++
T Consensus 2 v~~~IdkAT~~~l-~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~-k~s~vq~lALtlLE~cvkNCG~~fh~~V 77 (470)
T KOG1087|consen 2 VGKLIDKATSESL-AEPDWALNLEICDLINSTEGGPKEAVRALKKRLNS-KNSKVQLLALTLLETCVKNCGYSFHLQV 77 (470)
T ss_pred hHHHHHHhhcccc-cCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4567899999875 77888777777777877777778999999999985 4558888899999988887555554334
No 21
>smart00040 CSF2 Granulocyte-macrophage colony-simulating factor (GM-CSF). GM-CSF stimulates the development of and the cytotoxic activity of white blood cells.
Probab=25.25 E-value=1.6e+02 Score=25.09 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHhhhhccccCCChhhHHHHHHHHHHHHHhhhhHHhhhHHHHHHhHhHHHHHHHH
Q 018185 214 PLVDDIMGLVGED--YLSAINEVSIRVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITAL 291 (359)
Q Consensus 214 ~lI~~af~Ll~~D--ly~~inEgvilLe~ffEm~~~l~~~dA~~aL~iyKrf~~qtE~l~~f~~~~k~~~~~~w~~~~~~ 291 (359)
+.|.+|..|+-.. .-+++||.|-+|.+.|+..+ .- |-|+ +|..|- +|++|.+-+|
T Consensus 17 dAIkEAlsLLn~s~dt~a~mnEtVeVVSe~Fd~qe----pt-----------ClQt-RL~LYk-------qGLrGslt~L 73 (121)
T smart00040 17 DAIKEALSLLNDSRDTAAVMNETVEVVSEMFDLQE----PT-----------CLQT-RLKLYK-------QGLRGSLTKL 73 (121)
T ss_pred HHHHHHHHHHhcCCchHhHhcchHHHHHhccCCCC----Cc-----------HHHH-HHHHHH-------hhccccHHHh
Confidence 4577888887664 67789998778888887532 11 2222 333443 7899999999
Q ss_pred HhHHHHH-HHHHh
Q 018185 292 KDKVAKE-RAYRD 303 (359)
Q Consensus 292 k~~~~~~-~~~~~ 303 (359)
|..+--+ .-|++
T Consensus 74 kg~LtmmA~hYkq 86 (121)
T smart00040 74 KGPLTMMASHYKQ 86 (121)
T ss_pred hcHHHHHHHHHHh
Confidence 9886644 34443
No 22
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=24.62 E-value=75 Score=24.36 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=30.6
Q ss_pred CCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHH
Q 018185 47 TPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSL 92 (359)
Q Consensus 47 ~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaL 92 (359)
.|+-+++|+..+..+. .++.++++++..+.++.-..|.-+++..
T Consensus 7 ~~~~~~~i~~~V~sG~--Y~s~SEVir~aLR~le~~e~~~~~Lr~~ 50 (69)
T TIGR02606 7 GEHLESFIRSQVQSGR--YGSASEVVRAALRLLEERETKLQALRDA 50 (69)
T ss_pred CHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999887444 4567899999988887544454444444
No 23
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=24.03 E-value=3.6e+02 Score=24.04 Aligned_cols=85 Identities=7% Similarity=-0.054 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCChhhHH--HHHHHHHHHHHhhhhHHhhhHHHHHHhHhHHHHHHHHH
Q 018185 215 LVDDIMGLVGEDYLSAINEVSIRVSEFNNRLGCLSLGDSV--ELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITALK 292 (359)
Q Consensus 215 lI~~af~Ll~~Dly~~inEgvilLe~ffEm~~~l~~~dA~--~aL~iyKrf~~qtE~l~~f~~~~k~~~~~~w~~~~~~k 292 (359)
....|--||--+.-.-+.+||.+||.....-.-.++.|+. -|+..||- .+-+.--.|.+.|=. .+.-|.++.+||
T Consensus 35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRl--keY~~s~~yvd~ll~-~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRL--KEYSKSLRYVDALLE-TEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHH--hhHHHHHHHHHHHHh-hCCCcHHHHHHH
Confidence 3555666666667788999999998888521113344543 34445532 111111133333322 356899999999
Q ss_pred hHHHHHHHHHh
Q 018185 293 DKVAKERAYRD 303 (359)
Q Consensus 293 ~~~~~~~~~~~ 303 (359)
..|++. +++|
T Consensus 112 ~~ied~-itke 121 (149)
T KOG3364|consen 112 ETIEDK-ITKE 121 (149)
T ss_pred HHHHHH-Hhhc
Confidence 998863 5555
No 24
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=23.69 E-value=5.1e+02 Score=22.88 Aligned_cols=91 Identities=23% Similarity=0.307 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCcCCCCcHHHHHHHHHHHHH-HHHHHHHHHH-HHhhhhcc--------ccCCChhhHHH
Q 018185 186 DLLKEVDSLLSLLEQMCKTPDCLHVRGNPLVDDIMGLVGED-YLSAINEVSI-RVSEFNNR--------LGCLSLGDSVE 255 (359)
Q Consensus 186 ~LL~~l~~LQ~lid~l~~~p~~~~~~~N~lI~~af~Ll~~D-ly~~inEgvi-lLe~ffEm--------~~~l~~~dA~~ 255 (359)
.+|.+++....+++.+...........|.+-.++=.|+.+- -...+.|.|- .|..|-++ ....+. .-..
T Consensus 18 ~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~sV-~~~~ 96 (157)
T PF04136_consen 18 QLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSSV-NSDS 96 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCcc-cchH
Confidence 34444444444444442222222124445555555555544 2333344444 44332211 012232 2456
Q ss_pred HHHHHHHHHHhhhhHHhhhHHH
Q 018185 256 LACALKRLEDCKERLSVLSHRK 277 (359)
Q Consensus 256 aL~iyKrf~~qtE~l~~f~~~~ 277 (359)
...++.+..+|-+-+..-.+.+
T Consensus 97 F~~~L~~LD~cl~Fl~~h~~fk 118 (157)
T PF04136_consen 97 FKPMLSRLDECLEFLEEHPNFK 118 (157)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 7789999999998887544443
No 25
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=23.06 E-value=1.1e+02 Score=22.63 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=25.6
Q ss_pred HhhhhhcccccccCCCCcccchhhhhhhccChHHHHHHHHHHH
Q 018185 153 LSTSRVLGFFLSSSSSSVEMDKEEEKVSALVNIDLLKEVDSLL 195 (359)
Q Consensus 153 l~~~r~l~~d~~~~~s~~~~~~~~~~~~~L~~~~LL~~l~~LQ 195 (359)
...|+.+|.|++=.. +.+-...-.-+.++.+.++.+|+.+|
T Consensus 16 a~vf~~~gIDfCCgG--~~~L~eA~~~~~ld~~~vl~~L~~lq 56 (56)
T PF04405_consen 16 ARVFRKYGIDFCCGG--NRSLEEACEEKGLDPEEVLEELNALQ 56 (56)
T ss_pred HHHHHHcCCcccCCC--CchHHHHHHHcCCCHHHHHHHHHHcC
Confidence 455888899987432 11111222335677889999998876
No 26
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=21.45 E-value=46 Score=29.09 Aligned_cols=19 Identities=5% Similarity=0.071 Sum_probs=14.1
Q ss_pred CCCCChhhHHHHHHh---ccCCcc
Q 018185 46 STPPDPKRLTTLLSF---GHSSRA 66 (359)
Q Consensus 46 ~~pPK~KhV~~IL~~---t~~s~~ 66 (359)
..|||+||.++ .. ||+.++
T Consensus 92 ~~paKYky~dp--~G~~~TWTGrG 113 (135)
T PRK10947 92 ARPAKYSYVDE--NGETKTWTGQG 113 (135)
T ss_pred CCCCCCcccCC--CCCcCcccCCC
Confidence 37899999886 43 677765
No 27
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.43 E-value=5.9e+02 Score=22.72 Aligned_cols=57 Identities=14% Similarity=-0.031 Sum_probs=37.1
Q ss_pred HHHHHHHH-HHhhhhccccCCChhhHHHHHHHHHHHHHhhhhHHhh---------hHHHHHHhHhHHHHHH
Q 018185 229 SAINEVSI-RVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVL---------SHRKRVLIEAFWGLIT 289 (359)
Q Consensus 229 ~~inEgvi-lLe~ffEm~~~l~~~dA~~aL~iyKrf~~qtE~l~~f---------~~~~k~~~~~~w~~~~ 289 (359)
..-.+..- ++.+.|... -.++...++..+.|..++-++..| .++-+.||...|+-+.
T Consensus 47 ~~E~~a~r~il~~~f~i~----~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweIa~ 113 (148)
T COG4103 47 ESEREAFRAILKENFGID----GEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEIAY 113 (148)
T ss_pred HHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 33344444 677777653 355666777778888888777655 3445558888898764
Done!