Citrus Sinensis ID: 018186

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36

MAEASRTFHTILLPSFSHLHKAQSPAGFTDFPRKRCGHRIVVHCSVSTTNDASRTKTTVTQNMIPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSA

ccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEccccEEEEEccccccccEEEEcccccccccccccccccHHHHHHccccccHHHHHHHHHHHHccccccccHHHHHHccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccEEEcccccccccccccccEEEEEccccEEEEEEccccccccEEEcccccccHHHHHHHcccccccccccccEEEEEcccccccccHHHHHHHHHHccccc

ccHHHHHHHHccccccccccccccccccccccHHHccccccccccccHHccHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccEEEEEccccccEEEEEEccccccEEEEEcHHHEEcHHHHcccccHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHccccccccEEccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEHHHHHccccccEEEEEEcccccEEEEEEEcccccccEEEEEcccccHHHHHHHcccccccccccccEEEEEEEcccccHHHHHHHHHHHHccccc

maeasrtfhtillpsfshlhkaqspagftdfprkrcghrivvhcsvsttndasrtkttvtqnmipwgceidslENASTLQKWlsdsglppqkmaiqkvdVGERGLVALKNIrkgekllfvppslvitadskwscpeagevlkqcsvpdwpLLATYLISEAsfekssrwsnyisalprqpyslLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIfskypdlfpeevfnmetFKWSFGILFSRLvrlpsmdgrvalvpwadmlnhscevetfldydkssqgvvfttdrqyqpgeQVFISYgkksngelllsygfvpregtnpsdsvelplslkksdKCYKEKLEALRKYGLSA

MAEASRTFHTILLPSFSHLHKAQSPAGFTDFPRKRCGHRIVVHcsvsttndasrtkttvtqnmiPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKnirkgekllfvppSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWsnyisalprqpySLLYWTRAELDRYLEASQIRERAIEritnvigtyndLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVpregtnpsdsvelplslkksdkcykeKLEALRKYGLSA

*******FHTILLPSFSHLHKAQSPAGFTDFPRKRCGHRIVVHCSVSTTNDASRTKTTVTQNMIPWGCEIDSLENASTLQKWLSDS*****KMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFV**************************************

*********TI******************************************************************TLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGL**

*********************************************************************IDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKY****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		359	2.2.26 [Sep-21-2011]
Q43088		489	Ribulose-1,5 bisphosphate	N/A	no	0.749	0.550	0.328	4e-23
P94026		491	Ribulose-1,5 bisphosphate	N/A	no	0.754	0.551	0.299	2e-21
Q9XI84		482	[Fructose-bisphosphate al	no	no	0.727	0.541	0.316	8e-21
B2KI88		594	Histone-lysine N-methyltr	N/A	no	0.746	0.451	0.277	7e-19
B5FW36		595	Histone-lysine N-methyltr	N/A	no	0.746	0.450	0.273	2e-18
E2RBS6		588	Histone-lysine N-methyltr	yes	no	0.746	0.455	0.273	3e-18
B0VX69		595	Histone-lysine N-methyltr	yes	no	0.746	0.450	0.273	3e-18
Q86TU7		594	Histone-lysine N-methyltr	yes	no	0.746	0.451	0.273	3e-18
A9X1D0		595	Histone-lysine N-methyltr	N/A	no	0.746	0.450	0.273	3e-18
B1MTJ4		595	Histone-lysine N-methyltr	N/A	no	0.746	0.450	0.273	3e-18

>sp\|Q43088\|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Pisum sativum GN=RBCMT PE=1 SV=1	Back alignment and function desciption

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/295 (32%), Positives = 145/295 (49%), Gaps = 26/295 (8%)

Query: 78  TLQKWLSDSGLPPQKMAIQKVDVGER-GLVALKNIRKGEKLLFVPPSLVITADSKWSCPE 136
           T  KWL + G+   K  ++   V E  GLVALK+I + + +L VP  L I  D+      
Sbjct: 56  TFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDA----VA 111

Query: 137 AGEVLKQCS-VPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLE 195
           A E+ + CS +  W  +  +LI E S E S  W +Y   LP++  S +YW+  EL   L+
Sbjct: 112 ASEIGRVCSELKPWLSVILFLIRERSREDSV-WKHYFGILPQETDSTIYWSEEELQE-LQ 169

Query: 196 ASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSR-LVRLP 254
            SQ+ +  +     V      L   I      LFP+ V  ++ F W+FGIL SR   RL 
Sbjct: 170 GSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPV-TLDDFFWAFGILRSRAFSRLR 228

Query: 255 SMDGRVALVPWADMLNHSCEVETF-LDYDKSSQGVVFTTDRQY--------QPGEQVFIS 305
           + +  + +VP AD++NHS  V T    Y+      +F+ D  +        + GEQV+I 
Sbjct: 229 NEN--LVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQ 286

Query: 306 YG-KKSNGELLLSYGFV-PREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLS 358
           Y   KSN EL L YGF+ P E  +   +  L L + +SD  + +KL+     G +
Sbjct: 287 YDLNKSNAELALDYGFIEPNENRH---AYTLTLEISESDPFFDDKLDVAESNGFA 338

Methylates 'Lys-14' of the large subunit of RuBisCO.
Pisum sativum (taxid: 3888)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 7

>sp\|P94026\|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum GN=RBCMT PE=2 SV=1	Back alignment and function description

>sp\|Q9XI84\|RBCMT_ARATH [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=LSMT-L PE=1 SV=1	Back alignment and function description

>sp\|B2KI88\|SETD3_RHIFE Histone-lysine N-methyltransferase setd3 OS=Rhinolophus ferrumequinum GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B5FW36\|SETD3_OTOGA Histone-lysine N-methyltransferase setd3 OS=Otolemur garnettii GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|E2RBS6\|SETD3_CANFA Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B0VX69\|SETD3_CALJA Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|Q86TU7\|SETD3_HUMAN Histone-lysine N-methyltransferase setd3 OS=Homo sapiens GN=SETD3 PE=1 SV=1	Back alignment and function description

>sp\|A9X1D0\|SETD3_PAPAN Histone-lysine N-methyltransferase setd3 OS=Papio anubis GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B1MTJ4\|SETD3_CALMO Histone-lysine N-methyltransferase setd3 OS=Callicebus moloch GN=SETD3 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		359
224129218		503	predicted protein [Populus trichocarpa]	0.986	0.703	0.819	1e-168
255582876		508	Ribulose-1,5 bisphosphate carboxylase/ox	0.991	0.700	0.810	1e-167
449453618		497	PREDICTED: ribulose-1,5 bisphosphate car	0.974	0.704	0.793	1e-164
225447500		497	PREDICTED: ribulose-1,5 bisphosphate car	0.958	0.692	0.804	1e-163
356547583		499	PREDICTED: ribulose-1,5 bisphosphate car	0.941	0.677	0.764	1e-158
297829320		504	SET domain-containing protein [Arabidops	0.983	0.700	0.761	1e-156
15231493		504	rubisco methyltransferase-like protein [	0.969	0.690	0.751	1e-154
21537309		504	putative ribulose-1,5-bisphosphate carbo	0.969	0.690	0.745	1e-154
3065835		504	putative methyltransferase [Arabidopsis	0.969	0.690	0.748	1e-153
357462493		497	SET domain-containing protein [Medicago	0.952	0.688	0.744	1e-151

>gi\|224129218\|ref\|XP_002320530.1\| predicted protein [Populus trichocarpa] gi\|222861303\|gb\|EEE98845.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 296/361 (81%), Positives = 316/361 (87%), Gaps = 7/361 (1%)

Query: 1   MAEASRT-FHTILLPSFSHLHKAQSPAGFTD-FPRKRCGHRIVVHCSVSTTNDASRTKTT 58
           MAEA R   +T  LPS   LHK      ++  F  KR      + CS+ST++D ++    
Sbjct: 1   MAEACRIILNTTFLPSLHSLHKTHKKVSYSQPFLHKR---HPAIQCSISTSSD-TKAAAK 56

Query: 59  VTQNMIPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLL 118
           V++  +PWGC+IDSLENA  LQKWLSDSGLPPQKMAIQKV+VGERGLVALKNIRKGE LL
Sbjct: 57  VSET-VPWGCDIDSLENAEALQKWLSDSGLPPQKMAIQKVEVGERGLVALKNIRKGEMLL 115

Query: 119 FVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQ 178
           FVPPSLVI ADS+WSCPEAGEVLK+ SVPDWPLLATYLISEASFEKSSRWSNYISALPRQ
Sbjct: 116 FVPPSLVIAADSEWSCPEAGEVLKKYSVPDWPLLATYLISEASFEKSSRWSNYISALPRQ 175

Query: 179 PYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMET 238
           PYSLLYWTRAELD YLEASQIRERAIERITNV GTYNDLRLRIFSKYP LFPEEVFNMET
Sbjct: 176 PYSLLYWTRAELDTYLEASQIRERAIERITNVTGTYNDLRLRIFSKYPHLFPEEVFNMET 235

Query: 239 FKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQP 298
           FKWSFGILFSRLVRLPSMDGRVALVPWADMLNHS EVETFLDYDKSS+GVVFTTDR YQP
Sbjct: 236 FKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSSEVETFLDYDKSSKGVVFTTDRPYQP 295

Query: 299 GEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLS 358
           GEQVFISYG+KSNGELLLSYGFVPREGTNPSDSVEL LSLKKSDKCYKEKLEAL+K+GLS
Sbjct: 296 GEQVFISYGRKSNGELLLSYGFVPREGTNPSDSVELSLSLKKSDKCYKEKLEALKKHGLS 355

Query: 359 A 359
            
Sbjct: 356 V 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255582876\|ref\|XP_002532210.1\| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis] gi\|223528106\|gb\|EEF30179.1\| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449453618\|ref\|XP_004144553.1\| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] gi\|449511789\|ref\|XP_004164054.1\| PREDICTED: LOW QUALITY PROTEIN: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225447500\|ref\|XP_002267469.1\| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Vitis vinifera] gi\|296085051\|emb\|CBI28466.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356547583\|ref\|XP_003542190.1\| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|297829320\|ref\|XP_002882542.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297328382\|gb\|EFH58801.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15231493|ref|NP_187424.1| rubisco methyltransferase-like protein [Arabidopsis thaliana] gi|6466950|gb|AAF13085.1|AC009176_12 putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|6648179|gb|AAF21177.1|AC013483_1 putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|15028205|gb|AAK76599.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|19310671|gb|AAL85066.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|332641064|gb|AEE74585.1| rubisco methyltransferase-like protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|21537309\|gb\|AAM61650.1\| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|3065835\|gb\|AAC14296.1\| putative methyltransferase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357462493\|ref\|XP_003601528.1\| SET domain-containing protein [Medicago truncatula] gi\|355490576\|gb\|AES71779.1\| SET domain-containing protein [Medicago truncatula] gi\|388500078\|gb\|AFK38105.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		359
TAIR\|locus:2077342		504	AT3G07670 [Arabidopsis thalian	0.983	0.700	0.753	8.6e-143
TAIR\|locus:2014764		482	LSMT-L "lysine methyltransfera	0.788	0.587	0.307	2.8e-25
TAIR\|locus:2145663		514	AT5G14260 "AT5G14260" [Arabido	0.771	0.538	0.297	2.3e-24
UNIPROTKB\|B2KI88		594	SETD3 "Histone-lysine N-methyl	0.757	0.457	0.281	5.8e-21
UNIPROTKB\|F6R2J7		594	SETD3 "Uncharacterized protein	0.752	0.454	0.282	9e-21
UNIPROTKB\|F1SAQ4		595	SETD3 "Uncharacterized protein	0.752	0.453	0.291	9e-21
UNIPROTKB\|B0VX69		595	SETD3 "Histone-lysine N-methyl	0.752	0.453	0.282	2.2e-20
UNIPROTKB\|B5FW36		595	SETD3 "Histone-lysine N-methyl	0.752	0.453	0.282	2.2e-20
UNIPROTKB\|Q86TU7		594	SETD3 "Histone-lysine N-methyl	0.752	0.454	0.282	3.2e-20
UNIPROTKB\|A9X1D0		595	SETD3 "Histone-lysine N-methyl	0.752	0.453	0.282	3.2e-20

TAIR\|locus:2077342 AT3G07670 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1396 (496.5 bits), Expect = 8.6e-143, P = 8.6e-143
 Identities = 272/361 (75%), Positives = 306/361 (84%)

Query:     1 MAEASRTFHTILLPSFSHLHKAQSP---AGFTDFPRKRCGHRIVVHCSVSTTNDASRTKT 57
             MA+A     + LLP++S LHK ++      F+  P  RC  R  +HCSVS      ++  
Sbjct:     1 MAKAC-LLQSTLLPAYSPLHKLRNQNITLSFSPLPLSRC--RPGIHCSVSAGETTIQSME 57

Query:    58 TVTQNMIPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKL 117
                +  I WGCEIDSLENA++LQ WLSDSGLPPQKMAI +VD+GERGLVA +N+RKGEKL
Sbjct:    58 EAPK--ISWGCEIDSLENATSLQNWLSDSGLPPQKMAIDRVDIGERGLVASQNLRKGEKL 115

Query:   118 LFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPR 177
             LFVPPSLVI+ADS+W+  EAGEV+K+  VPDWPLLATYLISEAS +KSSRW NYISALPR
Sbjct:   116 LFVPPSLVISADSEWTNAEAGEVMKRYDVPDWPLLATYLISEASLQKSSRWFNYISALPR 175

Query:   178 QPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNME 237
             QPYSLLYWTR ELD YLEASQIRERAIERITNV+GTY DLR RIFSK+P LFP+EVFN E
Sbjct:   176 QPYSLLYWTRTELDMYLEASQIRERAIERITNVVGTYEDLRSRIFSKHPQLFPKEVFNDE 235

Query:   238 TFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQ 297
             TFKWSFGILFSRLVRLPSMDGR ALVPWADMLNH+CEVETFLDYDKSS+GVVFTTDR YQ
Sbjct:   236 TFKWSFGILFSRLVRLPSMDGRFALVPWADMLNHNCEVETFLDYDKSSKGVVFTTDRPYQ 295

Query:   298 PGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGL 357
             PGEQVFISYG KSNGELLLSYGFVPREGTNPSDSVEL LSL+K+DKCY+EKL+AL+K+GL
Sbjct:   296 PGEQVFISYGNKSNGELLLSYGFVPREGTNPSDSVELALSLRKNDKCYEEKLDALKKHGL 355

Query:   358 S 358
             S
Sbjct:   356 S 356

GO:0009507 "chloroplast" evidence=ISM

GO:0030785 "[ribulose-bisphosphate carboxylase

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

TAIR\|locus:2014764 LSMT-L "lysine methyltransferase (LSMT)-like" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2145663 AT5G14260 "AT5G14260" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|B2KI88 SETD3 "Histone-lysine N-methyltransferase setd3" [Rhinolophus ferrumequinum (taxid:59479)]	Back alignment and assigned GO terms

UNIPROTKB\|F6R2J7 SETD3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SAQ4 SETD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|B0VX69 SETD3 "Histone-lysine N-methyltransferase setd3" [Callithrix jacchus (taxid:9483)]	Back alignment and assigned GO terms

UNIPROTKB\|B5FW36 SETD3 "Histone-lysine N-methyltransferase setd3" [Otolemur garnettii (taxid:30611)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00141165	hypothetical protein (504 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		359
pfam00856		113	pfam00856, SET, SET domain	2e-10
smart00317		124	smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest	2e-08

>gnl\|CDD\|216155 pfam00856, SET, SET domain	Back alignment and domain information

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 261 ALVPWADMLNHSCE--VETFLDYDKSSQGVVFTTDRQYQPGEQVFISYG 307
            L   A  +NHSCE   E    +      +V    R  +PGE++ I YG
Sbjct: 65  GLGNVARFINHSCEPNCEVRFVFVNGGDRIVVRALRDIKPGEELTIDYG 113

SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure. Length = 113

>gnl\|CDD\|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		359
KOG1338		466	consensus Uncharacterized conserved protein [Funct	100.0
KOG1337		472	consensus N-methyltransferase [General function pr	99.98
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	99.76
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	99.0
KOG2589		453	consensus Histone tail methylase [Chromatin struct	95.79
KOG1085		392	consensus Predicted methyltransferase (contains a	95.63
KOG4442		729	consensus Clathrin coat binding protein/Huntingtin	94.62
KOG1079		739	consensus Transcriptional repressor EZH1 [Transcri	94.15
KOG1080		1005	consensus Histone H3 (Lys4) methyltransferase comp	94.04
COG2940		480	Proteins containing SET domain [General function p	91.52
KOG1082		364	consensus Histone H3 (Lys9) methyltransferase SUV3	85.53
KOG1083		1306	consensus Putative transcription factor ASH1/LIN-5	80.65

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=8.8e-33  Score=261.27  Aligned_cols=274  Identities=22%  Similarity=0.338  Sum_probs=218.5

Q ss_pred             HHHHHHHHHhCC-CCC-CCcEEEeeC----CCceEEEEcccCCCCCEEEEcCCCCcccccCCCC---CchhhhhhccCCC
Q 018186           76 ASTLQKWLSDSG-LPP-QKMAIQKVD----VGERGLVALKNIRKGEKLLFVPPSLVITADSKWS---CPEAGEVLKQCSV  146 (359)
Q Consensus        76 ~~~l~~Wl~~~G-~~~-~~v~i~~~~----~~GrGl~At~~I~~ge~ll~IP~~l~is~~~a~~---~~~~~~~l~~~~l  146 (359)
                      .+.|+.|++..+ ... ++|.+...+    ..|+|++|+++|++||.|+.+|++++++..+...   .|+..+++= +++
T Consensus         9 ~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~L-ne~   87 (466)
T KOG1338|consen    9 AKRFLLWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLL-NEV   87 (466)
T ss_pred             HHHHHHHHHHhhheeecccccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHh-hcC
Confidence            689999999987 443 778776543    2499999999999999999999999999876311   222222221 468


Q ss_pred             CChHHHHHHHHHHhccCCCCCcHHHHHhcCCC--CCCccccCHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018186          147 PDWPLLATYLISEASFEKSSRWSNYISALPRQ--PYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSK  224 (359)
Q Consensus       147 ~~~~~Lal~Ll~E~~~g~~S~w~pYl~~LP~~--~~~pl~w~~~el~~lL~gt~l~~~~~~~~~~~~~~y~~~~~~l~~~  224 (359)
                      +.|..|++.|++|...+..|+|+||++.+|+.  .++|+||+++|++.+++|+-+.+ ..+..+.+.+.|....+++.+.
T Consensus        88 gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee-~~Kd~aeI~~~~i~~i~pf~~~  166 (466)
T KOG1338|consen   88 GSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEE-TVKDKAEIEKDFIFVIQPFKQH  166 (466)
T ss_pred             CcHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchh-hHhHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999877779999999999975  57899999999997677776655 7788899999999999999999


Q ss_pred             CCCCCCccCCCHHHHHHHHhhhhhcceecCCCC-------------CceEeeeeeecccCCCC-cceeEEeeCCCCeEEE
Q 018186          225 YPDLFPEEVFNMETFKWSFGILFSRLVRLPSMD-------------GRVALVPWADMLNHSCE-VETFLDYDKSSQGVVF  290 (359)
Q Consensus       225 ~p~~f~~~~~t~~~f~WA~~~V~SRaf~~~~~~-------------~~~~LvP~~Dm~NH~~~-~~~~~~~d~~~~~~~l  290 (359)
                      +|..|..  +++++|..+++++.+.+|.++-..             ..-+|+|.+||+||+.. .|+...|+  ++|+.|
T Consensus       167 ~p~vfs~--~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~--~NcL~m  242 (466)
T KOG1338|consen  167 CPIVFSR--PSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYE--DNCLEM  242 (466)
T ss_pred             Ccchhcc--cCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceecc--Ccceee
Confidence            9998864  899999999999999999875320             13589999999999987 77778885  699999


Q ss_pred             EEcCcCCCCceEEecCCCCChHHHHhcCCcccCCCCC-------CCCeEEEeeccCCCCccHHHHHHHHHHCCC
Q 018186          291 TTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTN-------PSDSVELPLSLKKSDKCYKEKLEALRKYGL  357 (359)
Q Consensus       291 ~a~r~i~~GeEv~isYG~~sN~~LL~~YGFv~~~~~N-------p~D~v~L~l~l~~~d~~~~~K~~~L~~~Gl  357 (359)
                      +|+|+|.+|+||+++||.++|.  |++||.+.-.+..       -.|.+++-.+++.+++....|.-++..+|.
T Consensus       243 va~r~iekgdev~n~dg~~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~il~ql~nt  314 (466)
T KOG1338|consen  243 VADRNIEKGDEVDNSDGLKPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLILLQLHNT  314 (466)
T ss_pred             eecCCCCCccccccccccCcch--hhhhhhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHHHHHhccc
Confidence            9999999999999999998888  6666665442211       123344444667788888888776666653

>KOG1337 consensus N-methyltransferase [General function prediction only]	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]	Back alignment and domain information

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]	Back alignment and domain information

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>COG2940 Proteins containing SET domain [General function prediction only]	Back alignment and domain information

>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		359
1mlv_A		444	Structure And Catalytic Mechanism Of A Set Domain P		4e-24
2h21_A		440	Structure Of Rubisco Lsmt Bound To Adomet Length =		4e-24
3smt_A		497	Crystal Structure Of Human Set Domain-Containing Pr		3e-18
3qxy_A		449	Human Setd6 In Complex With Rela Lys310 Length = 44		2e-10

>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444

Back alignment and structure

Iteration: 1

Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 145/297 (48%), Gaps = 26/297 (8%) Query: 76 ASTLQKWLSDSGLPPQKMAIQKVDVGER-GLVALKNIRKGEKLLFVPPSLVITADSKWSC 134 T KWL + G+ K ++ V E GLVALK+I + + +L VP L I D+ Sbjct: 10 VQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDA---- 65 Query: 135 PEAGEVLKQCS-VPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRY 193 A E+ + CS + W + +LI E S E S W +Y LP++ S +YW+ EL Sbjct: 66 VAASEIGRVCSELKPWLSVILFLIRERSREDSV-WKHYFGILPQETDSTIYWSEEELQE- 123 Query: 194 LEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSR-LVR 252 L+ SQ+ + + V L I LFP+ V ++ F W+FGIL SR R Sbjct: 124 LQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPV-TLDDFFWAFGILRSRAFSR 182 Query: 253 LPSMDGRVALVPWADMLNHSCEVETF-LDYDKSSQGVVFTTDRQY--------QPGEQVF 303 L + + + +VP AD++NHS V T Y+ +F+ D + + GEQV+ Sbjct: 183 LRNEN--LVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVY 240 Query: 304 ISYG-KKSNGELLLSYGFV-PREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLS 358 I Y KSN EL L YGF+ P E + + L L + +SD + +KL+ G + Sbjct: 241 IQYDLNKSNAELALDYGFIEPNENRH---AYTLTLEISESDPFFDDKLDVAESNGFA 294

PyMOL of 1mlv

>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440

Back alignment and structure

>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497

Back alignment and structure

>pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310 Length = 449

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		359
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	2e-63
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	1e-61
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	3e-58
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	2e-10
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	1e-08
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449	Back alignment and structure

 Score =  207 bits (528), Expect = 2e-63
 Identities = 65/312 (20%), Positives = 122/312 (39%), Gaps = 15/312 (4%)

Query: 56  KTTVTQNMIPWGCEIDSLENASTLQKWLSDSGLP-PQKMAIQKVDVGE-RGLVALKNIRK 113
            T   +  +    +   L+  +    W    GL    K+A+ +       G+VA ++++ 
Sbjct: 2   ATQAKRPRVAGPVDGGDLDPVACFLSWCRRVGLELSPKVAVSRQGTVAGYGMVARESVQA 61

Query: 114 GEKLLFVPPSLVITAD-SKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYI 172
           GE L  VP + +++            E +   S   W  L   L+ E     S RW  Y 
Sbjct: 62  GELLFVVPRAALLSQHTCSIGGLLERERVALQSQSGWVPLLLALLHELQAPAS-RWRPYF 120

Query: 173 SALPR--QPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFP 230
           +  P   +    ++W   E    L+ + + E   + + N+   Y  + L     +PDLF 
Sbjct: 121 ALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHPDLFS 180

Query: 231 EEVFNMETFKWSFGILFSRLVRLPSMDG-------RVALVPWADMLNHSCEVETFLDYDK 283
             V ++E +     ++ +   + P  +           +VP AD+LNH       L+Y  
Sbjct: 181 LRVRSLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYS- 239

Query: 284 SSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDK 343
            +  +     +    G ++F +YG+ +N +L+  YGFV     N  D+ ++ +   +   
Sbjct: 240 -ANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEPYPDNTDDTADIQMVTVREAA 298

Query: 344 CYKEKLEALRKY 355
               K EA R  
Sbjct: 299 LQGTKTEAERHL 310

PyMOL of 3qxy

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497	Back alignment and structure

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		359
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	100.0
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	100.0
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	100.0
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	99.53
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	99.52
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	99.46
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	98.5
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	97.97
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	97.86
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	97.77
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	97.67
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	97.54
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	97.5
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	97.47
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	97.29
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	97.29
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	97.28
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	97.24
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	97.14
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	97.13
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	97.08
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	97.01
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	95.0
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	94.99
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	94.19
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	93.76
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	92.86
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	91.71
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	91.57
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	90.92
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	89.01
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	89.0
3ihx_A		152	PR domain zinc finger protein 10; PRDM10, methyltr	87.93
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	87.81
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	86.17
3ray_A		237	PR domain-containing protein 11; structural genomi	83.25
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	83.18
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	82.98
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	82.05
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	81.68

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=4.9e-55  Score=442.49  Aligned_cols=290  Identities=27%  Similarity=0.457  Sum_probs=246.0

Q ss_pred             cccCCCCCcchhcHHHHHHHHHhCCCCCCCcEEEeeCCCceEEEEcccCCCCCEEEEcCCCCcccccCCCCCchhhhhhc
Q 018186           63 MIPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLK  142 (359)
Q Consensus        63 ~~~~~~~~~~~~~~~~l~~Wl~~~G~~~~~v~i~~~~~~GrGl~At~~I~~ge~ll~IP~~l~is~~~a~~~~~~~~~l~  142 (359)
                      ++....+..+.+.+.+|++|++++|+.+++|++..++++||||+|+++|++||+|++||.+++||.+++..+ .++.++.
T Consensus        65 ~~~~~~~~~r~~~~~~ll~W~~~~G~~~~~v~i~~~~~~GrGl~A~~dI~~ge~ll~IP~~lllt~~~a~~s-~l~~~~~  143 (497)
T 3smt_A           65 GLSVTFDGKREDYFPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELFLWVPRKLLMTVESAKNS-VLGPLYS  143 (497)
T ss_dssp             SCSCCCSSCGGGGHHHHHHHHHHTTCCCTTEEEEEETTTEEEEEESSCBCTTCEEEEEEGGGCEEHHHHHTS-TTHHHHH
T ss_pred             ccCCccccccHHHHHHHHHHHHHCCCCccceEEEEcCCCccEEEEcccCCCCCEEEEcCHHHhCcHHhhhhh-hcccccc
Confidence            344444566678899999999999999999999999999999999999999999999999999999876532 2343332


Q ss_pred             cCC---CCChHHHHHHHHHHhccCCCCCcHHHHHhcCCCCCCccccCHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Q 018186          143 QCS---VPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRL  219 (359)
Q Consensus       143 ~~~---l~~~~~Lal~Ll~E~~~g~~S~w~pYl~~LP~~~~~pl~w~~~el~~lL~gt~l~~~~~~~~~~~~~~y~~~~~  219 (359)
                      ...   ...+..|+++|++|+. +++|+|+|||++||+.+++|++|+++|++ +|+||++...+.++.+.+.++|..+..
T Consensus       144 ~~~~l~~~~~~~Lal~Ll~E~~-~~~S~w~pYl~~LP~~~~~pl~w~~eel~-~L~gt~l~~~v~~~~~~~~~~~~~~~~  221 (497)
T 3smt_A          144 QDRILQAMGNIALAFHLLCERA-SPNSFWQPYIQTLPSEYDTPLYFEEDEVR-YLQSTQAIHDVFSQYKNTARQYAYFYK  221 (497)
T ss_dssp             HCHHHHHCHHHHHHHHHHHHHT-CTTCTTHHHHTTSCSCCCSGGGCCHHHHH-TTSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHhc-CCCCchHHHHHhCCCCCCCCCcCCHHHHh-hccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            211   1235679999999995 88999999999999999999999999998 699999998888877788888887653


Q ss_pred             HHHhhCCCCC--C-ccCCCHHHHHHHHhhhhhcceecCCCCC---ceEeeeeeecccCCCCcceeEEeeCCCCeEEEEEc
Q 018186          220 RIFSKYPDLF--P-EEVFNMETFKWSFGILFSRLVRLPSMDG---RVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTD  293 (359)
Q Consensus       220 ~l~~~~p~~f--~-~~~~t~~~f~WA~~~V~SRaf~~~~~~~---~~~LvP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~  293 (359)
                       ++..+|+.+  + .+.+|+++|.||+++|+||+|.++..+|   ..+|||++||+||++.++. ..|+.+++.+.++|.
T Consensus       222 -~~~~~p~~~~~~~~~~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~~-~~~~~~~~~~~~~a~  299 (497)
T 3smt_A          222 -VIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLIT-TGYNLEDDRCECVAL  299 (497)
T ss_dssp             -HC----CCCCSTTTTCCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECSCSEE-EEEETTTTEEEEEES
T ss_pred             -HHHhCcccccCccccccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCCcccc-eeeeccCCeEEEEeC
Confidence             556677653  2 3568999999999999999999986554   4699999999999998743 456666789999999


Q ss_pred             CcCCCCceEEecCCCCChHHHHhcCCcccCCCCCCCCeEEEeeccCCCCccHHHHHHHHHHCCCCC
Q 018186          294 RQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSA  359 (359)
Q Consensus       294 r~i~~GeEv~isYG~~sN~~LL~~YGFv~~~~~Np~D~v~L~l~l~~~d~~~~~K~~~L~~~Gl~~  359 (359)
                      ++|++||||||+||+++|++||++|||+++  +||+|.|.|.+.++++|+++.+|.++|+.+|++.
T Consensus       300 ~~i~~Geei~isYG~~~n~~Ll~~YGFv~~--~Np~D~v~l~l~~~~~d~l~~~K~~~L~~~gl~~  363 (497)
T 3smt_A          300 QDFRAGEQIYIFYGTRSNAEFVIHSGFFFD--NNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPT  363 (497)
T ss_dssp             SCBCTTCEEEECCCSCCHHHHHHHHSCCCT--TCTTCEEEEEEECCTTSTTHHHHHHHHHHTTCCS
T ss_pred             CccCCCCEEEEeCCCCChHHHHHHCCCCCC--CCCCceEEEEecCCCcchhHHHHHHHHHHcCCCc
Confidence            999999999999999999999999999998  8999999999999999999999999999999863

PyMOL of 3smt

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*	Back alignment and structure

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		359
d2h2ja2		261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	5e-48
d2g46a1		119	b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth	2e-04

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  161 bits (407), Expect = 5e-48
 Identities = 81/262 (30%), Positives = 117/262 (44%), Gaps = 19/262 (7%)

Query: 78  TLQKWLSDSGLPPQKMAIQKVDVGE-RGLVALKNIRKGEKLLFVPPSLVITADSKWSCPE 136
           T  KWL + G+   K  ++   V E  GLVALK+I + + +L VP  L I  D+  +  E
Sbjct: 7   TFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAV-AASE 65

Query: 137 AGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEA 196
            G V  +     W  +  +LI E S  + S W +Y   LP++  S +YW+  EL   L+ 
Sbjct: 66  IGRVCSEL--KPWLSVILFLIRERS-REDSVWKHYFGILPQETDSTIYWSEEELQ-ELQG 121

Query: 197 SQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSM 256
           SQ+ +  +     V      L   I      LFP+    ++ F W+FGIL SR       
Sbjct: 122 SQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDP-VTLDDFFWAFGILRSRAFSRLRN 180

Query: 257 DGRVALVPWADMLNHSC---------EVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYG 307
           +    +VP AD++NHS          EV+               +    + GEQV+I Y 
Sbjct: 181 ENL-VVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYD 239

Query: 308 -KKSNGELLLSYGFVPREGTNP 328
             KSN EL L YGF+     N 
Sbjct: 240 LNKSNAELALDYGFIE-PNENR 260

PyMOL of d2h2ja2

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		359
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	100.0
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	98.42
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	97.79
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	97.32
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	97.27
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	94.92
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	90.7
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	88.97
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	88.63

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=2.6e-46  Score=345.32  Aligned_cols=248  Identities=32%  Similarity=0.516  Sum_probs=207.4

Q ss_pred             hcHHHHHHHHHhCCCCCCCcEEEe-eCCCceEEEEcccCCCCCEEEEcCCCCcccccCCCCCchhhhhhccCCCCChHHH
Q 018186           74 ENASTLQKWLSDSGLPPQKMAIQK-VDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLL  152 (359)
Q Consensus        74 ~~~~~l~~Wl~~~G~~~~~v~i~~-~~~~GrGl~At~~I~~ge~ll~IP~~l~is~~~a~~~~~~~~~l~~~~l~~~~~L  152 (359)
                      .+.+.|++|++++|+..+++.+.. ..+.||||+|+++|++||+|++||..++|+.+++..+ ..++.+.  ...++..|
T Consensus         3 ~~~~~~~~W~~~~g~~~~~~~~~~~~~~~GrGl~AtrdI~~Ge~il~vP~~~~lt~~~~~~~-~~~~~~~--~~~~~~~l   79 (261)
T d2h2ja2           3 PAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAAS-EIGRVCS--ELKPWLSV   79 (261)
T ss_dssp             HHHHHHHHHHHTTTSSCSSCCCEEEEETTEEEEECSSCCCTTCEEEEEEGGGCCSHHHHHTS-GGGTTTT--TSCHHHHH
T ss_pred             hHHHHHHHHHHHCCCccCCceEeecCCCceeEEEECCcCCCCCEEEEeChHHhccHHHhhhh-HHHHHHh--hcCcHHHH
Confidence            457899999999999988887655 4467999999999999999999999999998765432 2333332  34567889


Q ss_pred             HHHHHHHhccCCCCCcHHHHHhcCCCCCCccccCHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 018186          153 ATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEE  232 (359)
Q Consensus       153 al~Ll~E~~~g~~S~w~pYl~~LP~~~~~pl~w~~~el~~lL~gt~l~~~~~~~~~~~~~~y~~~~~~l~~~~p~~f~~~  232 (359)
                      +++|++|+. +..|.|++|+++||+...+|++|+.++++ .|+++.+...+....+.+..+|..+...+....++.+. .
T Consensus        80 ~~~l~~e~~-~~~s~~~~y~~~lp~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  156 (261)
T d2h2ja2          80 ILFLIRERS-REDSVWKHYFGILPQETDSTIYWSEEELQ-ELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFP-D  156 (261)
T ss_dssp             HHHHHHHHH-CTTCTTHHHHTTSCSCCSCGGGCCHHHHH-TTTTCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCC-S
T ss_pred             HHHHHHHHh-CCCCchhhhhhccccccCCcccCCHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-C
Confidence            999999984 88999999999999999999999999998 58999999998888888999998887766655555543 3


Q ss_pred             CCCHHHHHHHHhhhhhcceecCCCCCceEeeeeeecccCCCCcceeEEeeC---------CCCeEEEEEcCcCCCCceEE
Q 018186          233 VFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDK---------SSQGVVFTTDRQYQPGEQVF  303 (359)
Q Consensus       233 ~~t~~~f~WA~~~V~SRaf~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~d~---------~~~~~~l~a~r~i~~GeEv~  303 (359)
                      .++++.|.||+++|.||+|..+... ..+|+|++||+||++.+|+.+.++.         .++.++|+|.|+|++|||||
T Consensus       157 ~~~~~~~~~a~~~v~sr~~~~~~~~-~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GEEI~  235 (261)
T d2h2ja2         157 PVTLDDFFWAFGILRSRAFSRLRNE-NLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVY  235 (261)
T ss_dssp             CCCHHHHHHHHHHHHHHSBCCC----CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTSBCE
T ss_pred             ccCHHHHHHHHHHhhcccccccccc-cccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCCEEE
Confidence            5899999999999999999886543 5799999999999999998765542         34678999999999999999


Q ss_pred             ecCCC-CChHHHHhcCCcccCCCCCCC
Q 018186          304 ISYGK-KSNGELLLSYGFVPREGTNPS  329 (359)
Q Consensus       304 isYG~-~sN~~LL~~YGFv~~~~~Np~  329 (359)
                      |+||. ++|++||++||||++ ++|||
T Consensus       236 isYG~~~~n~~ll~~yGFv~~-~~n~~  261 (261)
T d2h2ja2         236 IQYDLNKSNAELALDYGFIEP-NENRH  261 (261)
T ss_dssp             ECSCSSCCHHHHHHHSSCCCS-CGGGC
T ss_pred             EecCCCCCHHHHHHhCCCCCC-CCCCC
Confidence            99995 899999999999987 45886

PyMOL of d2h2ja2

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure