BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018187
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ARZ|A Chain A, Crystal Structure Of Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2ARZ|B Chain B, Crystal Structure Of Protein Of Unknown Function From
Pseudomonas Aeruginosa
Length = 247
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 22/238 (9%)
Query: 125 RTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSL 184
R +L + R +LST S+K+ G+P GS+V + DA+G P++ +S +A HT +L A+P+CS+
Sbjct: 13 RELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSM 72
Query: 185 LVA-RDPEDRTDLV-ITLHGDATSVAEKDKAAIRAVYLAKHP-NAFWVDFGDFQFMRIEP 241
LV R ED + +TL +A +AE++ AA Y P +A + DF F ++P
Sbjct: 73 LVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFWVLQP 132
Query: 242 KAVRYVSGVATALLGSGEFSKEEYQAANVDPIA-----QFSKPVASHMNRDHAEDTRIIV 296
R++ G F + AA P+A + + + HMN DHA V
Sbjct: 133 VQWRFIGG----------FGAIHWLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYV 182
Query: 297 QHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKTLIVEMLQA 354
+ + A+A + +D+ GF+++ G QG + +PFP + V+ +V++ +A
Sbjct: 183 ELAGLPAHAAAQLAGIDTEGFHLRIG-QGLHW---LPFPAACGNPGAVRQALVQLARA 236
>pdb|1VL7|A Chain A, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
pdb|1VL7|B Chain B, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
Length = 157
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 22/129 (17%)
Query: 135 MLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRT 194
++ST S+ +G P+GS F D + VS LAVHTK++ ANP ++L D E +T
Sbjct: 34 IISTISE--QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFV-DDEAKT 90
Query: 195 DLVIT---LHGDAT-SVAEKDKAAIRAVYLAKHPNAFWVDFG----------DFQFMRIE 240
+ + L D T ++ E++ V + F FG DF+ ++
Sbjct: 91 NQIFARRRLSFDCTATLIERESQKWNQVV-----DQFQERFGQIIEVLRGLADFRIFQLT 145
Query: 241 PKAVRYVSG 249
PK R+V G
Sbjct: 146 PKEGRFVIG 154
>pdb|3DNH|A Chain A, The Crystal Structure Of The Protein Atu2129 (Unknown
Function) From Agrobacterium Tumefaciens Str. C58
pdb|3DNH|B Chain B, The Crystal Structure Of The Protein Atu2129 (Unknown
Function) From Agrobacterium Tumefaciens Str. C58
Length = 258
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 120 PLEEIRT---VLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDL 176
P E +R VL S L+T GYP + + + DGTP + L +H ++
Sbjct: 25 PFEAVRVARDVLHTSRTAALATL-DPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNX 83
Query: 177 LANPKCSLLVARDPEDRTDLV----ITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDF 231
+ + S+ +A P + D + +TL G A + + A Y+A++P A ++
Sbjct: 84 ETDARISVTLA--PFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSL 141
Query: 232 GDFQFMRIEPKAVRYVSGVA 251
D + R+ + V+ G A
Sbjct: 142 PDTRLYRLRTEGVQINGGPA 161
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 37 LSSFTPLSFTLRRQLPMASFSAQVGQKSIFVYSLCTCDVFLFIYFWDYLIVCFDQAVSTG 96
L+S T TL ++ + SF + G K+I+V L ++ F D+ ++ F A+++G
Sbjct: 51 LTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSG 110
Query: 97 DVKSD 101
D +D
Sbjct: 111 DYDTD 115
>pdb|3MNF|A Chain A, Crystal Structure Of Pac2 Family Protein From Streptomyces
Avermitilis Ma
Length = 250
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 142 KYEGYPSG--SMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVIT 199
KYEG P+G ++ AC G P +++ + H NPK +L + ED D+ I
Sbjct: 153 KYEG-PTGIVGILQEACTHAGVPAVSLWAAVPHYVSQPPNPKATLALLNRLEDLIDVRIP 211
Query: 200 L 200
L
Sbjct: 212 L 212
>pdb|3A52|A Chain A, Crystal Structure Of Cold-Active Alkailne Phosphatase From
Psychrophile Shewanella Sp.
pdb|3A52|B Chain B, Crystal Structure Of Cold-Active Alkailne Phosphatase From
Psychrophile Shewanella Sp
Length = 400
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 119 PPLEEI-RTVLDRSVRGMLSTFSQKYEGY 146
P EEI +TV DR + GM ST+ + GY
Sbjct: 26 PDTEEIEQTVFDRLLVGMASTYPARESGY 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,964,455
Number of Sequences: 62578
Number of extensions: 390260
Number of successful extensions: 845
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 840
Number of HSP's gapped (non-prelim): 8
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)