Query 018187
Match_columns 359
No_of_seqs 260 out of 1294
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:52:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13883 Pyrid_oxidase_2: Pyri 100.0 8.8E-31 1.9E-35 234.6 13.3 146 117-266 3-169 (170)
2 COG0748 HugZ Putative heme iro 99.9 1.6E-23 3.5E-28 194.7 -0.6 227 123-358 8-241 (245)
3 PF10615 DUF2470: Protein of u 99.8 1.4E-21 2.9E-26 155.4 7.2 80 270-352 2-83 (83)
4 KOG3374 Cellular repressor of 99.7 7.8E-17 1.7E-21 141.9 12.1 150 114-267 38-207 (210)
5 PRK03467 hypothetical protein; 99.6 2.1E-14 4.5E-19 125.0 15.9 127 121-253 7-138 (144)
6 TIGR03668 Rv0121_F420 PPOX cla 99.5 2.6E-13 5.5E-18 118.3 15.2 121 122-245 3-138 (141)
7 PF01243 Pyridox_oxidase: Pyri 99.4 1.3E-12 2.8E-17 102.9 12.0 86 122-211 3-89 (89)
8 TIGR03667 Rv3369 PPOX class pr 99.4 2.2E-12 4.8E-17 110.6 14.3 117 122-243 5-129 (130)
9 COG0748 HugZ Putative heme iro 99.4 1.3E-14 2.7E-19 135.5 -0.3 173 84-266 49-229 (245)
10 TIGR03666 Rv2061_F420 PPOX cla 99.4 5.5E-12 1.2E-16 108.7 14.9 112 126-242 7-127 (132)
11 TIGR03618 Rv1155_F420 PPOX cla 99.4 2E-11 4.3E-16 101.5 14.0 107 135-245 1-116 (117)
12 PF12900 Pyridox_ox_2: Pyridox 99.2 5.3E-10 1.1E-14 96.9 13.9 119 121-245 2-140 (143)
13 COG3467 Predicted flavin-nucle 99.0 9.7E-09 2.1E-13 92.0 14.9 120 121-244 13-156 (166)
14 PRK05679 pyridoxamine 5'-phosp 99.0 1.6E-08 3.4E-13 92.8 15.2 118 126-249 22-170 (195)
15 COG3871 Uncharacterized stress 98.7 1.6E-07 3.5E-12 81.4 10.1 121 121-248 7-130 (145)
16 COG3787 Uncharacterized protei 98.6 9.2E-07 2E-11 75.1 12.1 126 122-253 3-133 (145)
17 TIGR00558 pdxH pyridoxamine-ph 98.6 2E-06 4.3E-11 80.3 15.4 117 128-249 46-192 (217)
18 PRK06733 hypothetical protein; 98.3 2.3E-05 5E-10 69.1 14.7 109 122-253 11-121 (151)
19 COG0259 PdxH Pyridoxamine-phos 98.3 2.1E-05 4.5E-10 71.9 13.3 116 128-249 43-189 (214)
20 PLN03049 pyridoxine (pyridoxam 98.2 3.7E-05 8.1E-10 79.3 15.7 116 128-249 286-433 (462)
21 COG5015 Uncharacterized conser 98.1 7.6E-05 1.7E-09 62.9 13.0 114 123-246 3-120 (132)
22 PLN02918 pyridoxine (pyridoxam 97.8 0.00052 1.1E-08 71.9 14.5 115 129-249 369-515 (544)
23 PF04299 FMN_bind_2: Putative 97.6 0.0017 3.7E-08 58.5 13.8 122 120-244 11-169 (169)
24 TIGR00026 hi_GC_TIGR00026 deaz 97.6 0.00097 2.1E-08 56.1 10.8 88 131-229 7-100 (113)
25 PF04075 DUF385: Domain of unk 97.1 0.0054 1.2E-07 53.0 9.9 100 131-241 25-132 (132)
26 KOG2586 Pyridoxamine-phosphate 96.9 0.0024 5.1E-08 58.5 6.5 87 128-224 53-141 (228)
27 PF12766 Pyridox_oxase_2: Pyri 96.0 0.072 1.6E-06 43.9 9.5 75 129-207 18-99 (100)
28 COG2808 PaiB Transcriptional r 95.4 0.14 3E-06 47.1 9.8 102 119-223 10-134 (209)
29 COG3576 Predicted flavin-nucle 91.0 1.4 3E-05 39.9 8.6 117 122-247 32-152 (173)
30 PF04289 DUF447: Protein of un 73.8 9.2 0.0002 34.5 6.1 53 134-190 3-55 (177)
31 PF08922 DUF1905: Domain of un 27.1 2.2E+02 0.0048 22.1 5.8 58 122-185 20-79 (80)
32 PHA02707 hypothetical protein; 22.9 24 0.00053 23.1 -0.3 12 67-78 3-14 (37)
33 PF00313 CSD: 'Cold-shock' DNA 21.1 3.3E+02 0.0072 19.7 5.9 50 134-190 3-55 (66)
34 COG2075 RPL24A Ribosomal prote 20.5 1.2E+02 0.0026 23.2 2.9 33 148-181 15-47 (66)
No 1
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=99.97 E-value=8.8e-31 Score=234.63 Aligned_cols=146 Identities=42% Similarity=0.679 Sum_probs=113.8
Q ss_pred CCCcHHHHHHHHhcCCeEEEEeecC--CCCCcceEEEeeeE----ECCCCcEEEEecCcchHhhhhhcCCCcEEEEeeCC
Q 018187 117 RLPPLEEIRTVLDRSVRGMLSTFSQ--KYEGYPSGSMVDFA----CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP 190 (359)
Q Consensus 117 rp~~ae~aR~LL~~~~~a~LATvs~--~~dG~P~~S~v~ya----~d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~ 190 (359)
....|+.||+|++..++|+|+|++. +.+|+|+++++.|+ .+.+|+|||++++++.|++||++||||||+|.+.+
T Consensus 3 ~~~aA~~AR~Ll~~~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~~~ 82 (170)
T PF13883_consen 3 REEAAELARTLLHQSRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISEPQ 82 (170)
T ss_dssp TT-HHHHHHHHHHH-SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEGGG
T ss_pred hHHHHHHHHHHHhhCCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEecCC
Confidence 4567899999999999999999984 34899999999999 78899999999999999999999999999998865
Q ss_pred ---------CCC--cceEEEEEEEEEEecchhHHHHHHHHHHhCCCC-ccccC---CCeEEEEEEEeEEEEeeccccccc
Q 018187 191 ---------EDR--TDLVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDF---GDFQFMRIEPKAVRYVSGVATALL 255 (359)
Q Consensus 191 ---------~~~--~~~RVtl~G~a~~v~d~e~~~l~~~y~~rhP~~-~~~~~---~df~l~rL~pe~v~~V~GFG~a~~ 255 (359)
++. +++||||.|++++|+++|.+.++++|+++||++ .|.++ +||.|+||+|++++||+|||++
T Consensus 83 ~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~w~~~~~~hdf~~~rl~i~~v~~vgGFG~~-- 160 (170)
T PF13883_consen 83 GGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKHWLPFNSPHDFFFYRLEIERVYLVGGFGGA-- 160 (170)
T ss_dssp SSHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGGS-GG---G--EEEEEEEEEEEEE-SSSS---
T ss_pred CCcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCccccccccccCccEEEEEEEEEEEEECccCCc--
Confidence 222 789999999999999888888999999999999 89999 9999999999999999999999
Q ss_pred CCCCCCHHHhh
Q 018187 256 GSGEFSKEEYQ 266 (359)
Q Consensus 256 ~~~~v~~~ey~ 266 (359)
+||+++||.
T Consensus 161 --~~i~~~~Y~ 169 (170)
T PF13883_consen 161 --AWISAEEYY 169 (170)
T ss_dssp --EEE-HHHHH
T ss_pred --eEeCHHHhc
Confidence 999999996
No 2
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.6e-23 Score=194.73 Aligned_cols=227 Identities=22% Similarity=0.221 Sum_probs=189.8
Q ss_pred HHHHHHhcCCeEEEEeecCCCCCcceEEEeeeEECCCCcEEEEecCcchHhhhhhcCCCcEEEEeeCC--CCCcceEEEE
Q 018187 123 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP--EDRTDLVITL 200 (359)
Q Consensus 123 ~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~--~~~~~~RVtl 200 (359)
-+|.+++..+++.|+|.... +|.|++|.+++..|.+|++.++++.++.|++ +.+|||+|++..+.+ ++.+.+|+++
T Consensus 8 na~~~l~~~~~~~l~~~~~~-~g~p~~sv~~~gid~~g~p~~~~~~~~~h~~-~~~d~r~sil~~~~g~~d~~~~~Rl~~ 85 (245)
T COG0748 8 NARHLLRSARLAALAGLEPV-TGVPFVSVVPVGIDIDGNPLILLSRLFPHTA-DEADPRCSILLGEPGKGDELALPRLTL 85 (245)
T ss_pred HHHHHHHHHHHHHHhcCCCC-CCCceeeeccceeccCCCcceeEeeeccccc-cccChhhhheecCcCcCChhhccchhH
Confidence 48899999999999999764 8999999999999999999999999999999 999999999998887 7788899999
Q ss_pred EEEEEEecchh--HHHHHHHHHHhCCCC-ccccCCCeEEEEEEEeEEEEeecccccccCCCCCCHHHhhcccCCcc-ccc
Q 018187 201 HGDATSVAEKD--KAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPI-AQF 276 (359)
Q Consensus 201 ~G~a~~v~d~e--~~~l~~~y~~rhP~~-~~~~~~df~l~rL~pe~v~~V~GFG~a~~~~~~v~~~ey~~A~pDpl-a~~ 276 (359)
.+.+..++.++ ...+.+.+..++|.+ .|.+.+||.+|+.++.+.....|++.. ++.-... .+..+. +..
T Consensus 86 e~~afr~~~~sv~lat~~~~g~~~~syAp~~~~~~d~~iyis~~arh~~N~~~~p~------vs~m~ie-dea~a~s~~~ 158 (245)
T COG0748 86 EIEAFRLEFDSVALATLRERGLPRASYAPLYVDDGDYYIYISEIARHARNLGFNPK------VSVMFIE-DEAKAKSAFA 158 (245)
T ss_pred HHHHHHhccchHHHhhhhhcCCcCCCcCceEecCCceEEEEehHHHHhhccCcCCc------hhhheec-CchhhhhHHH
Confidence 99999988654 456677788888888 888999999999999877776666651 1111111 122233 455
Q ss_pred chhhhhhhhhcCHHHHHHHHHHhCCCCC-CcEEEEEeeCCCcEEEEccCCceEEEEEcCCCCCCChhHHHHHHHHHHHHH
Q 018187 277 SKPVASHMNRDHAEDTRIIVQHSTSIPV-ASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKTLIVEMLQAA 355 (359)
Q Consensus 277 ~~~ii~HMN~DH~d~l~~i~~~~~~~~~-~~a~m~~ID~~G~dlr~~~~g~~~~~RIpF~~pv~~~~dvr~~Lv~m~~~A 355 (359)
+.+++.|||+||.++...|++.++.... ...+|.+||+.|+++.+...++...+|++|.+++.+.+|.+..++.|.+.+
T Consensus 159 r~rl~~hmnAd~~eai~~yaqv~~~~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgqa~~~~~d~~~~lV~l~~~~ 238 (245)
T COG0748 159 RKRLREHMNADHAEAIAEYAQVLAQLAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQAYAISGDGRIALVGLAGGP 238 (245)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcchhhcccccccceeeeccCCCceEEeccchhhccccchhHHHHHHhcCc
Confidence 7789999999999999999999987763 344499999999999997666667899999999999999999999999986
Q ss_pred hcc
Q 018187 356 NSH 358 (359)
Q Consensus 356 ~~~ 358 (359)
+..
T Consensus 239 h~~ 241 (245)
T COG0748 239 HGF 241 (245)
T ss_pred ccc
Confidence 643
No 3
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known. ; PDB: 3GAS_D 3SWJ_A 2ARZ_B.
Probab=99.85 E-value=1.4e-21 Score=155.40 Aligned_cols=80 Identities=38% Similarity=0.662 Sum_probs=66.2
Q ss_pred CCcccc-cchhhhhhhhhcCHHHHHHHHHHhCCCC-CCcEEEEEeeCCCcEEEEccCCceEEEEEcCCCCCCChhHHHHH
Q 018187 270 VDPIAQ-FSKPVASHMNRDHAEDTRIIVQHSTSIP-VASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKTL 347 (359)
Q Consensus 270 pDpla~-~~~~ii~HMN~DH~d~l~~i~~~~~~~~-~~~a~m~~ID~~G~dlr~~~~g~~~~~RIpF~~pv~~~~dvr~~ 347 (359)
|||++. .+++||+|||+||+|++..||++|++.+ +.+|+|++||++||+|++ ++...+||||++|+++++|+|.+
T Consensus 2 ~dp~~~~~~~~ii~HMN~DH~d~l~~~~~~~~~~~~~~~a~m~~id~~G~~l~~---~~~~~~ripF~~p~~~~~e~r~~ 78 (83)
T PF10615_consen 2 PDPLAPEAAARIIEHMNDDHADDLLLYARHYGGVPDAASARMTDIDRDGFDLRV---GGDQDVRIPFPPPVTDPEEARDA 78 (83)
T ss_dssp --TTTTHHHHHHHHHHHHH-HHHHHHHHHHHHT-SSSSS-EEEEEETTEEEEEE---TTTEEEEEE-SS---SHCCHHHH
T ss_pred cCcccHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCCCCEEEEEEeccccEEEE---eCCcceEcCCCCCCCCHHHHHHH
Confidence 799985 8999999999999999999999999985 799999999999999999 33479999999999999999999
Q ss_pred HHHHH
Q 018187 348 IVEML 352 (359)
Q Consensus 348 Lv~m~ 352 (359)
||+|+
T Consensus 79 lV~ma 83 (83)
T PF10615_consen 79 LVEMA 83 (83)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99996
No 4
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=99.71 E-value=7.8e-17 Score=141.87 Aligned_cols=150 Identities=19% Similarity=0.312 Sum_probs=132.6
Q ss_pred hhcCCCcHHHHHHHHhcCCeEEEEeecCCC--CCcceEEEeeeEE----CCCCcEEEEecCcchHhhhhhcCCCcEEEEe
Q 018187 114 AAARLPPLEEIRTVLDRSVRGMLSTFSQKY--EGYPSGSMVDFAC----DADGTPILAVSSLAVHTKDLLANPKCSLLVA 187 (359)
Q Consensus 114 ~~~rp~~ae~aR~LL~~~~~a~LATvs~~~--dG~P~~S~v~ya~----d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~ 187 (359)
+.+|...|..||.+..++++|.|+|++... .|+|++.++.+.- .+.|.|||+++++.....|++.||+++|++.
T Consensus 38 ~p~r~d~A~iAR~lvh~~~Wgal~TlSt~e~vkG~Pf~nViS~sDg~p~~gtG~pyFyLt~Ld~t~~n~qkd~~atL~~s 117 (210)
T KOG3374|consen 38 RPQRLDHAKIARDLVHRANWGALGTLSTNERVKGYPFVNVISISDGDPNNGTGRPYFYLTDLDFTGPNWQKDNKATLLFS 117 (210)
T ss_pred CCchhhHHHHHHHHhhhcccceeeeeeecccccCCccceEEEccCCCCcCCCCceEEEeccCCCCCcccccCCceeEEee
Confidence 456788899999999999999999998534 7999999998763 1248999999999999999999999999998
Q ss_pred eCC---------CCC--cceEEEEEEEEEEecch--hHHHHHHHHHHhCCCC-ccccCCCeEEEEEEEeEEEEeeccccc
Q 018187 188 RDP---------EDR--TDLVITLHGDATSVAEK--DKAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVATA 253 (359)
Q Consensus 188 ~~~---------~~~--~~~RVtl~G~a~~v~d~--e~~~l~~~y~~rhP~~-~~~~~~df~l~rL~pe~v~~V~GFG~a 253 (359)
+.. ||+ .+.+++|+|++..+++. +.+...+.|..|||++ .|...+.|.|-+|++..+.+.+-||+.
T Consensus 118 ~~qt~~Ck~~g~DPm~PtC~~~mlsG~v~k~~~~~~~~~~~~~alf~rHPem~~w~~~hn~~~~~l~isni~vld~~ggp 197 (210)
T KOG3374|consen 118 DEQTLRCKEGGKDPMEPTCARSMLSGQVKKMDPSDKSYQPSLDALFRRHPEMINWVKAHNFYLCELEISNIFVLDFYGGP 197 (210)
T ss_pred ccccchhhcCCCCCCCchhhhheecceEEEeCCcchhhhhhhhhHhhcCHhHcCCccccceEEEEEeeeeEEEEEecCCC
Confidence 764 454 78899999999999863 5666779999999999 899999999999999999999999998
Q ss_pred ccCCCCCCHHHhhc
Q 018187 254 LLGSGEFSKEEYQA 267 (359)
Q Consensus 254 ~~~~~~v~~~ey~~ 267 (359)
+.|+++||.+
T Consensus 198 ----~~vs~~~yy~ 207 (210)
T KOG3374|consen 198 ----HKVSASDYYA 207 (210)
T ss_pred ----cccCHHHhcc
Confidence 8999999986
No 5
>PRK03467 hypothetical protein; Provisional
Probab=99.61 E-value=2.1e-14 Score=124.95 Aligned_cols=127 Identities=16% Similarity=0.127 Sum_probs=111.0
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeeEECCCC-cEEEEecCcchHhhhhhcCCCcEEEEeeCC-CCCcceEE
Q 018187 121 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADG-TPILAVSSLAVHTKDLLANPKCSLLVARDP-EDRTDLVI 198 (359)
Q Consensus 121 ae~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d~dG-~~~~~vS~~s~htrNL~~dpRvSL~V~~~~-~~~~~~RV 198 (359)
-+.+.++|++.+..+|||.+ ++.||+..+.|++|+++ .+||..++.++|.+|+.+||+|+.+|..+. +......|
T Consensus 7 ~~~I~~fl~~~hvltLa~~~---~~~~w~A~cFY~fd~~~~~l~~~S~~~TrH~~~~~~np~VAgTI~~~~~~v~~I~Gv 83 (144)
T PRK03467 7 LTAISRWLAKQHVVTLCVGQ---EGELWCANCFYVFDAQKVAFYLLTEEKTRHGQMMGPNAQVAGTVNGQPKTVALIRGV 83 (144)
T ss_pred HHHHHHHHHhCcEEEEEEEc---CCCcceEEEEEEEcCCCeEEEEEcCCCCHHHHHHhhCCCEEEEEcCCCcchhhceEE
Confidence 46899999999999999996 67899999999998764 578888889999999999999999998877 45566789
Q ss_pred EEEEEEEEecchhHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEee---ccccc
Q 018187 199 TLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS---GVATA 253 (359)
Q Consensus 199 tl~G~a~~v~d~e~~~l~~~y~~rhP~~~~~~~~df~l~rL~pe~v~~V~---GFG~a 253 (359)
++.|.+..++++|.+.+++.|.+|||-+... ...+|+|++.++.+++ |||+.
T Consensus 84 Q~~G~~~~l~~~e~~~Ar~~Y~~rFP~A~~~---~~~iw~l~l~~iK~tdN~LGFgkK 138 (144)
T PRK03467 84 QFKGEIRRLEGEESDAARKRYNRRFPVARAL---SAPVWELRLDEIKMTDNTLGFGKK 138 (144)
T ss_pred EEEEEEEecChhHHHHHHHHHHHhCcchhcc---CCceEEEEEEEEEEeccccccccc
Confidence 9999999999887788899999999998433 3358999999999998 99984
No 6
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.53 E-value=2.6e-13 Score=118.33 Aligned_cols=121 Identities=25% Similarity=0.174 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeeEEC------CCCcEEEEe------cCcchHhhhhhcCCCcEEEEeeC
Q 018187 122 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACD------ADGTPILAV------SSLAVHTKDLLANPKCSLLVARD 189 (359)
Q Consensus 122 e~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d------~dG~~~~~v------S~~s~htrNL~~dpRvSL~V~~~ 189 (359)
++++++|++.+.++|||++ +||.|+.++++|+++ +++.+|+++ ...+.|.+||++||||+++|...
T Consensus 3 ~e~~~~L~~~~~~~LaTv~--~dG~P~vvPv~f~~d~~~~~~~~~~i~~~~~~~~~t~~~~~K~~ni~~nPrVs~~v~~~ 80 (141)
T TIGR03668 3 FEARTRFAQARVARLATVS--PDGEPHLVPVVFAVGAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENPRVSLLVDRY 80 (141)
T ss_pred HHHHHHHccCCEEEEEEEC--CCCCeEEEeEEEEEccccccCCCCEEEEEecCCCCcccccHHHHHHhhCCCEEEEEecC
Confidence 5799999999999999998 899999999999998 367777763 35568999999999999988653
Q ss_pred CCCC-cceEEEEEEEEEEecch--hHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEE
Q 018187 190 PEDR-TDLVITLHGDATSVAEK--DKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVR 245 (359)
Q Consensus 190 ~~~~-~~~RVtl~G~a~~v~d~--e~~~l~~~y~~rhP~~~~~~~~df~l~rL~pe~v~ 245 (359)
++.. ....+++.|+++.++++ +.+++.+.+.++|+..... ..+..+++|+|+++.
T Consensus 81 ~~~~~~~~~v~v~G~a~~~~d~~~e~~~~~~~l~~kY~~~~~~-~~~~~vi~i~~~r~~ 138 (141)
T TIGR03668 81 DDDWTRLWWVRADGRAEILRPGEEEHAAAVRLLRAKYHQYQAV-PLEGPVIAIRVERWA 138 (141)
T ss_pred CCCccceEEEEEEEEEEEecCCchhhHHHHHHHHHHhHhhhhc-CCCCcEEEEEEEEEe
Confidence 3222 23469999999999864 4555666666666542111 123788999998664
No 7
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=99.45 E-value=1.3e-12 Score=102.95 Aligned_cols=86 Identities=30% Similarity=0.397 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeeEECCCC-cEEEEecCcchHhhhhhcCCCcEEEEeeCCCCCcceEEEE
Q 018187 122 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADG-TPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITL 200 (359)
Q Consensus 122 e~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d~dG-~~~~~vS~~s~htrNL~~dpRvSL~V~~~~~~~~~~RVtl 200 (359)
+++++++++.+.++|||++ .||.|++++++|..+.++ .++|.....+.|++||++||+|+|++.+++ .....+++
T Consensus 3 ~~~~~~l~~~~~~~laTv~--~dG~P~~~~v~~~~~~~~~~i~~~t~~~~~k~~nl~~np~v~l~~~~~~--~~~~~v~~ 78 (89)
T PF01243_consen 3 EEIREFLEESKYCVLATVD--EDGRPHASPVWFVYDDDDNTIYFATNPGSRKVRNLRRNPRVSLLFCDPE--GTRRGVRV 78 (89)
T ss_dssp HHHHHHHHSTSEEEEEEEE--TTSEEEEEEEEEEEECTTTEEEEEEETTSHHHHHHHHSTEEEEEEEETT--TTTEEEEE
T ss_pred HHHHHHhcCCCEEEEEEEC--CCCCEEEEEEeeecCCceeEEEEeecCCCCchhhCccCCeEEEEEEEcC--cCceEEEE
Confidence 6899999999999999998 799999999999987554 699999999999999999999999999977 44568999
Q ss_pred EEEEEEecchh
Q 018187 201 HGDATSVAEKD 211 (359)
Q Consensus 201 ~G~a~~v~d~e 211 (359)
.|+++.++++|
T Consensus 79 ~G~a~~~~d~E 89 (89)
T PF01243_consen 79 SGTAEILTDEE 89 (89)
T ss_dssp EEEEEEESHHH
T ss_pred EEEEEEEcCCC
Confidence 99999998764
No 8
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.45 E-value=2.2e-12 Score=110.62 Aligned_cols=117 Identities=22% Similarity=0.226 Sum_probs=93.0
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeeEECCCCcEEEEecCcchHhhhhhcCCCcEEEEeeCCCCCcceEEEEE
Q 018187 122 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLH 201 (359)
Q Consensus 122 e~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~~~~~~~RVtl~ 201 (359)
++++++|++.+.+.|+|++ +||.|+..+++|..+ +|.++|+....+.+.+||++||+|+|++.+++.. ...+.+.
T Consensus 5 ~~~~~~L~~~~~~~LaT~~--~dG~P~~~P~~~~~~-d~~l~~~t~~~s~K~~~l~~np~Vsl~~~~~~~~--~~~v~v~ 79 (130)
T TIGR03667 5 AKVARRLREESIVWLTTVR--RSGQPQPVPVWFLWD-GTEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGRG--GDVVVFT 79 (130)
T ss_pred HHHHHHhcCCCeEEEEEEC--CCCceEEEEEEEEEE-CCEEEEEeCCcCHHHHHHhhCCcEEEEEEcCCCC--ceEEEEE
Confidence 6899999999999999998 799999999999987 6889998999999999999999999999775422 2368999
Q ss_pred EEEEEecchhHHHHHHHHHHhCCCC--cc-c-----cCCCeEEEEEEEeE
Q 018187 202 GDATSVAEKDKAAIRAVYLAKHPNA--FW-V-----DFGDFQFMRIEPKA 243 (359)
Q Consensus 202 G~a~~v~d~e~~~l~~~y~~rhP~~--~~-~-----~~~df~l~rL~pe~ 243 (359)
|+++.+++.+..+..+.|.+++++. .+ . ..+...++||+|++
T Consensus 80 G~a~i~~d~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T TIGR03667 80 GTAEVVADAPPAREIPAYLAKYREDAARIGMTPERFAADYSVPLRVTPER 129 (130)
T ss_pred EEEEEeCCchhHHHHHHHHHHhhHHHhcCCCChhHhhhccceeEEEeccc
Confidence 9999998764333445566666653 11 1 23345599999975
No 9
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.3e-14 Score=135.50 Aligned_cols=173 Identities=20% Similarity=0.176 Sum_probs=145.7
Q ss_pred ceeEeeeccccCCCCCChHH-HHHHHHhchhhhcCCCcHHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeeEECCCCcE
Q 018187 84 YLIVCFDQAVSTGDVKSDAN-VFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTP 162 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~f~~~r~~~~~~~rp~~ae~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d~dG~~ 162 (359)
.|+++|+++. +.+++++ |+..|+..+....-+....+++.+.....+..|+|++ ++|.|-+|+.++..+. +..
T Consensus 49 ~~~~~~~h~~---~~~d~r~sil~~~~g~~d~~~~~Rl~~e~~afr~~~~sv~lat~~--~~g~~~~syAp~~~~~-~d~ 122 (245)
T COG0748 49 LLSRLFPHTA---DEADPRCSILLGEPGKGDELALPRLTLEIEAFRLEFDSVALATLR--ERGLPRASYAPLYVDD-GDY 122 (245)
T ss_pred eEeeeccccc---cccChhhhheecCcCcCChhhccchhHHHHHHHhccchHHHhhhh--hcCCcCCCcCceEecC-Cce
Confidence 4899999996 4588999 9999999987776666667999999999999999998 7999999999999984 679
Q ss_pred EEEecCcchHhhhhhcCCCcEEEEeeCC----CCCcceEEEEEEEEEEecc-hhHHHHHHHHHHhCCCC--ccccCCCeE
Q 018187 163 ILAVSSLAVHTKDLLANPKCSLLVARDP----EDRTDLVITLHGDATSVAE-KDKAAIRAVYLAKHPNA--FWVDFGDFQ 235 (359)
Q Consensus 163 ~~~vS~~s~htrNL~~dpRvSL~V~~~~----~~~~~~RVtl~G~a~~v~d-~e~~~l~~~y~~rhP~~--~~~~~~df~ 235 (359)
|+++|..++|.+|+..+|++|+|+.+++ ....+.|++....+..++. +.+..+...+.+++.+. ....++||.
T Consensus 123 ~iyis~~arh~~N~~~~p~vs~m~iedea~a~s~~~r~rl~~hmnAd~~eai~~yaqv~~~~~e~~~~~I~~Id~~gdfl 202 (245)
T COG0748 123 YIYISEIARHARNLGFNPKVSVMFIEDEAKAKSAFARKRLREHMNADHAEAIAEYAQVLAQLAEATGGRIKGIDAMGDFL 202 (245)
T ss_pred EEEEehHHHHhhccCcCCchhhheecCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcchhhcccccccce
Confidence 9999999999999999999999999887 2336778888888877764 44566777777777773 566789999
Q ss_pred EEEEEEeEEEEeecccccccCCCCCCHHHhh
Q 018187 236 FMRIEPKAVRYVSGVATALLGSGEFSKEEYQ 266 (359)
Q Consensus 236 l~rL~pe~v~~V~GFG~a~~~~~~v~~~ey~ 266 (359)
++.++|++.+++.|||++ +.++.+.-.
T Consensus 203 l~~l~~~~gl~v~gFgqa----~~~~~d~~~ 229 (245)
T COG0748 203 LFQLTPGQGLFVKGFGQA----YAISGDGRI 229 (245)
T ss_pred eeeccCCCceEEeccchh----hccccchhH
Confidence 999999999999999999 666655433
No 10
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.42 E-value=5.5e-12 Score=108.72 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=91.8
Q ss_pred HHHhcCCeEEEEeecCCCCCcceEEEeeeEECCCCcEEEEecCcchHhhhhhcCCCcEEEEeeCCCCCcceEEEEEEEEE
Q 018187 126 TVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 205 (359)
Q Consensus 126 ~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~~~~~~~RVtl~G~a~ 205 (359)
..|++++.++|+|++ +||.|+.++++|+.+ +|.+||+.+..+.|.+||++||+|+|.+.+... ....+++.|+++
T Consensus 7 ~~L~~~~~~~LaT~~--~dG~P~~~Pv~~~~d-~g~l~f~t~~~~~K~~nl~~np~Vsl~v~~~~~--~~~~v~v~G~A~ 81 (132)
T TIGR03666 7 ADLARARYALLTTFR--KDGTPVPTPVWAAVD-GDKLLVRTKEDSWKVKRIRNNPRVTLAPCDRRG--RPTGPVVPGRAR 81 (132)
T ss_pred HHhccCcEEEEEEEC--CCCcEEEEEEEEEEE-CCEEEEEECCcCHHHHHHHhCCCEEEEEECCCC--CEeEEEEEEEEE
Confidence 568899999999997 899999999999987 578999999999999999999999999876542 123599999999
Q ss_pred EecchhHHHHHHHHHHhCCCC--cc-----c--cCCCeEEEEEEEe
Q 018187 206 SVAEKDKAAIRAVYLAKHPNA--FW-----V--DFGDFQFMRIEPK 242 (359)
Q Consensus 206 ~v~d~e~~~l~~~y~~rhP~~--~~-----~--~~~df~l~rL~pe 242 (359)
.++++|...+.+.+.++++.. .+ . ..+....+||+|+
T Consensus 82 ~v~~~e~~~~~~~l~~kY~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 127 (132)
T TIGR03666 82 ILDGAETARARDLLARRYGLQGRLFPLFSKLRRGRDRNVGLELTPA 127 (132)
T ss_pred EEcchhHHHHHHHHHHHcCChhhhhhhHHHhhccCCCceEEEEEec
Confidence 997777777788888888875 22 1 2345677788775
No 11
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=99.36 E-value=2e-11 Score=101.51 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=83.7
Q ss_pred EEEeecCCCCCcceEEEeeeEECC-CCcEEEEecCcchHhhhhhcCCCcEEEEeeCCCCCcceEEEEEEEEEEecch-hH
Q 018187 135 MLSTFSQKYEGYPSGSMVDFACDA-DGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEK-DK 212 (359)
Q Consensus 135 ~LATvs~~~dG~P~~S~v~ya~d~-dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~~~~~~~RVtl~G~a~~v~d~-e~ 212 (359)
+|+|++ .+|.|++++++|+.+. ++.+||+.+..+.|++||++||+|++++.+++... .++++.|+++.++++ +.
T Consensus 1 ~LaTv~--~~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~~--~~v~i~G~a~~v~d~~~~ 76 (117)
T TIGR03618 1 VLATIR--ADGRPQLSPVWFGVDPDGDILVVSTTAGRAKARNLRRDPRVSLSVLDPDFPY--RYVEVEGTAELVEDPDPV 76 (117)
T ss_pred CEEEEC--CCCCEEEEEEEEEEcCCCCEEEEEecCCcHhhHhhhhCCeEEEEEECCCCCc--cEEEEEEEEEEecCCccc
Confidence 589997 7999999999999843 45699999999999999999999999998876321 479999999999874 45
Q ss_pred HHHHHHHHHhCCCC----cc---ccCCCeEEEEEEEeEEE
Q 018187 213 AAIRAVYLAKHPNA----FW---VDFGDFQFMRIEPKAVR 245 (359)
Q Consensus 213 ~~l~~~y~~rhP~~----~~---~~~~df~l~rL~pe~v~ 245 (359)
+.+.+++.+++... .| .+-++..+++|+|++++
T Consensus 77 ~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~l~i~p~~~~ 116 (117)
T TIGR03618 77 RDLVDRLAERYRGAAGEDEYRRPMVDPRRVVVRVTPTRVY 116 (117)
T ss_pred HHHHHHHHHHHcccccchhcccccCCCCEEEEEEEEEEec
Confidence 56666666666332 12 22367899999999874
No 12
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=99.18 E-value=5.3e-10 Score=96.93 Aligned_cols=119 Identities=25% Similarity=0.362 Sum_probs=93.6
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeeEECCCCcEEEEecCcchHhhhhhcCCCcEEEEeeCC----CCC---
Q 018187 121 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP----EDR--- 193 (359)
Q Consensus 121 ae~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~----~~~--- 193 (359)
.+++.++|++..+|+||+.+ +|.||..|++|+++ +|.+||+.+..+.+.++|++|| |++++...+ .+.
T Consensus 2 ~~e~~~iL~~~~~g~la~~~---~~~Py~vP~~f~~~-~~~ly~h~~~~g~k~~~l~~~p-v~~~~~~~~~~~~~~~~~~ 76 (143)
T PF12900_consen 2 REEIWEILDRAPVGRLAFVD---DGYPYIVPVNFVYD-GGSLYFHGARGGKKIELLRNNP-VCFTVDEVDELVPAESACS 76 (143)
T ss_dssp HHHHHHHHHH-SEEEEEEEE---TTEEEEEEEEEEEE-TTEEEEEECSHSHHHHHHHHEE-EEEEEEEEEEEEETSCGGG
T ss_pred HHHHHHHHhhCCEEEEEEEe---CCEEEEEEEEEEEE-CCEEEEEECCcchHHHHhccCC-eEEEEEecCcEeecccCCc
Confidence 37899999999999999997 79999999999999 5789999988899999999888 999987733 111
Q ss_pred ---cceEEEEEEEEEEecc-hhHHHHHHHHHHhC-CCCccc--------cCCCeEEEEEEEeEEE
Q 018187 194 ---TDLVITLHGDATSVAE-KDKAAIRAVYLAKH-PNAFWV--------DFGDFQFMRIEPKAVR 245 (359)
Q Consensus 194 ---~~~RVtl~G~a~~v~d-~e~~~l~~~y~~rh-P~~~~~--------~~~df~l~rL~pe~v~ 245 (359)
....|.++|+++.|++ +|..++...+.+++ |+. |. ......+|||+|+++.
T Consensus 77 ~~~~y~SVi~~G~~~~v~d~~ek~~al~~l~~~~~p~~-~~~~~~~~~~~~~~~~v~ri~i~~~s 140 (143)
T PF12900_consen 77 FSMNYRSVIVFGRAEEVEDEEEKAEALRALLEKYAPGR-WDEIRPFADKELKRTAVYRIDIEELS 140 (143)
T ss_dssp EEEEEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHSTTT-CCCSC---HHHHHTEEEEEEEEEEEE
T ss_pred CcceEEEEEEEEEEEEeCCHHHHHHHHHHHHHhccCCC-cccccccchhhhcCeEEEEEEeEEEE
Confidence 3568999999999976 45666666666655 432 21 1235799999999764
No 13
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=99.02 E-value=9.7e-09 Score=91.95 Aligned_cols=120 Identities=23% Similarity=0.268 Sum_probs=92.8
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeeEECCCCcEEEEecCcchHhhhhhcCCCcEEEEeeCC---------C
Q 018187 121 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP---------E 191 (359)
Q Consensus 121 ae~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~---------~ 191 (359)
.+++..+|+.+..+.||+.+ +|.||+.++.|+.++ |.+|++.+..++|...|+.||.|++.+.+.. .
T Consensus 13 ~~~i~~~l~~~~~~~La~~~---~~~PyivP~~y~~~~-~~lY~h~~~~grk~~~l~~~p~V~~ev~~~~~~~~~~~~~~ 88 (166)
T COG3467 13 DEEIDAILAAGRVGRLAFAG---DGQPYVVPLNYGYEG-GHLYFHGSPEGRKIELLRKNPLVCLEVDEIHGLVLKSPFNS 88 (166)
T ss_pred HHHHHHHHhhCCEEEEEEcC---CCCcEEEEeEeEEeC-CeEEEEeCCcchhhHHhhcCCcEEEEEEccccceecccccC
Confidence 57899999999999999996 788999999999985 6799999999999999999999999998765 3
Q ss_pred CCcceEEEEEEEEEEecch-hHHHHH----HHHHHhCCCC--c----cc----cCCCeEEEEEEEeEE
Q 018187 192 DRTDLVITLHGDATSVAEK-DKAAIR----AVYLAKHPNA--F----WV----DFGDFQFMRIEPKAV 244 (359)
Q Consensus 192 ~~~~~RVtl~G~a~~v~d~-e~~~l~----~~y~~rhP~~--~----~~----~~~df~l~rL~pe~v 244 (359)
......|.++|+++.++++ +...+. +.+...+++. . .. ......+|++.++.+
T Consensus 89 s~~y~SVvv~G~~~~l~~~~~k~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (166)
T COG3467 89 SRNYRSVVVFGRAEELSDLEEKAAALDHAWSLLMKGRPNWWEPGGRKEVPETVDSSPHSFFRIKIDEI 156 (166)
T ss_pred CcceEEEEEEeEEEEcCChHHHHHHHHHHHHHhcccCcCcCCCCCccccccccccccceEEEEEccee
Confidence 4567789999999999974 444444 4444434443 1 11 223456777776643
No 14
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=98.98 E-value=1.6e-08 Score=92.76 Aligned_cols=118 Identities=21% Similarity=0.263 Sum_probs=86.1
Q ss_pred HHHhcCCeEEEEeecCCCCCcceEEEeeeE-ECCCCcEEEEecCcchHhhhhhcCCCcEEEEeeCCCCCcceEEEEEEEE
Q 018187 126 TVLDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDA 204 (359)
Q Consensus 126 ~LL~~~~~a~LATvs~~~dG~P~~S~v~ya-~d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~~~~~~~RVtl~G~a 204 (359)
.-+...+.++|||++ .||.|.+..|.+- .+++| ++|++...++|.++|++||+|++++..+. ....|.|.|.+
T Consensus 22 ~~~~~~~~~~lATv~--~dG~P~~R~V~lr~~~~~~-l~f~T~~~S~K~~~l~~np~val~~~~~~---~~~qvrv~G~a 95 (195)
T PRK05679 22 AELNDPNAMTLATVD--EDGRPSQRIVLLKGFDERG-FVFYTNYESRKGRQLAANPKAALLFPWKS---LERQVRVEGRV 95 (195)
T ss_pred cCCCCCceEEEEeeC--CCCCEEEEEEEEEEECCCe-EEEEeCCCCHHHHHHhhCCcEEEEEecCC---CCEEEEEEEEE
Confidence 335667889999998 7999999999984 67666 99999999999999999999999998764 23478999999
Q ss_pred EEecchhHHHHHH------------------------------HHHHhCCCCccccCCCeEEEEEEEeEEEEeec
Q 018187 205 TSVAEKDKAAIRA------------------------------VYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSG 249 (359)
Q Consensus 205 ~~v~d~e~~~l~~------------------------------~y~~rhP~~~~~~~~df~l~rL~pe~v~~V~G 249 (359)
+.+++++.++.-+ .+..++++......+.|.+|+|+|+++-|..+
T Consensus 96 ~~~~~~~~~~~w~~~p~~~r~~~~~~~qg~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~f~~~~l~p~~veflql 170 (195)
T PRK05679 96 EKVSAEESDAYFASRPRGSQIGAWASKQSRPISSRAALEAKFAEVKAKFAQGEVPRPPHWGGYRVVPESIEFWQG 170 (195)
T ss_pred EEeCHHHHHHHHHhCCHhhhceeeeCCCCCccCCHHHHHHHHHHHHhhccCCCCCCCCccEEEEEECCEEEEcCC
Confidence 9988653221111 00111111111223579999999999988764
No 15
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=98.67 E-value=1.6e-07 Score=81.44 Aligned_cols=121 Identities=22% Similarity=0.367 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeeEECCC-CcEEEEecCcchHhhhhhcCCCcEEEEeeCCCCCcceEEE
Q 018187 121 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD-GTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVIT 199 (359)
Q Consensus 121 ae~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d~d-G~~~~~vS~~s~htrNL~~dpRvSL~V~~~~~~~~~~RVt 199 (359)
......+++..+.+.|+|+. .+|+|+.-++.|--|+. |.+||..+..++++..|+.||+|++++..+.. ..-|.
T Consensus 7 ~~~~~~~~e~~kv~~l~tv~--~~g~phsRpM~f~hdg~~~tiwf~T~kds~~v~eik~n~~v~v~~~~~~~---~~fv~ 81 (145)
T COG3871 7 LQALAELLEGSKVGMLATVQ--ENGHPHSRPMTFNHDGPKGTIWFFTNKDSRKVEEIKKNPKVCVLFGYDDH---DAFVE 81 (145)
T ss_pred HHHHHHHHhhCceEEEEEec--CCCCccccceeccCCCCcccEEeeccCchHHHHHHhhCCcEEEEEecCCC---cceEE
Confidence 45678889999999999997 68899999998655543 89999999999999999999999999988763 34799
Q ss_pred EEEEEEEecchhH-HHH-HHHHHHhCCCCccccCCCeEEEEEEEeEEEEee
Q 018187 200 LHGDATSVAEKDK-AAI-RAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS 248 (359)
Q Consensus 200 l~G~a~~v~d~e~-~~l-~~~y~~rhP~~~~~~~~df~l~rL~pe~v~~V~ 248 (359)
+.|+++.+++... +++ ...+..-||.. .+-|++.+++++|+++.|..
T Consensus 82 v~Gtael~~dra~~d~~W~~~~~~wFe~G--kedP~l~~Lkv~~e~i~yw~ 130 (145)
T COG3871 82 VSGTAELVEDRAKIDELWTSVLEAWFEQG--KEDPDLTMLKVTAEDIDYWN 130 (145)
T ss_pred EEEEEEeeccHHHHHHhhhhhHHHHHhcC--CCCCCeEEEEEchhHhHHHh
Confidence 9999999987531 111 11111112111 24579999999999999874
No 16
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.59 E-value=9.2e-07 Score=75.11 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=104.9
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeeEECCCC-cEEEEecCcchHhhhhhcCCCcEEEEeeCCC-CCcceEEE
Q 018187 122 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADG-TPILAVSSLAVHTKDLLANPKCSLLVARDPE-DRTDLVIT 199 (359)
Q Consensus 122 e~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d~dG-~~~~~vS~~s~htrNL~~dpRvSL~V~~~~~-~~~~~RVt 199 (359)
+++-.+|++....++|... +|.||+....|+.|+.. .+|+...+..+|.+-+..|++|..+|..+.. ......|+
T Consensus 3 ~rI~~flkkq~v~Tw~~~~---e~~~w~asafYvFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~~qsKtva~ikGVQ 79 (145)
T COG3787 3 TRISRFLKKQHVLTWCVQQ---EGELWCASAFYVFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVAGQSKTVALIKGVQ 79 (145)
T ss_pred hHHHHHHHhhheeeeeeec---CCceeeeeeEEEEcccceEEEEEeccchhHHHhhCCCCceeeEeccCceeeeeeeeee
Confidence 4678899999999999885 79999999999999754 4555556678999999999999999988762 33456799
Q ss_pred EEEEEEEecchhHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEe---eccccc
Q 018187 200 LHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYV---SGVATA 253 (359)
Q Consensus 200 l~G~a~~v~d~e~~~l~~~y~~rhP~~~~~~~~df~l~rL~pe~v~~V---~GFG~a 253 (359)
..|....++.++.+.++..|.++||.+.... -.+|.|+++.+.++ -|||+.
T Consensus 80 fkge~~~l~~~q~~~Ark~Y~~rfp~akvd~---a~vwqleL~~ikftdNaLG~~kk 133 (145)
T COG3787 80 FKGEISRLSGEQSDAARKAYNRRFPVAKVDS---APVWQLELDEIKFTDNALGFGKK 133 (145)
T ss_pred eeeeehhhhcchHHHHHHHHhccCchhhccc---CceEEeeeeeEEeecccccccce
Confidence 9999999999888899999999999984432 34799999999998 688874
No 17
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=98.58 E-value=2e-06 Score=80.28 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=83.0
Q ss_pred HhcCCeEEEEeecCCCCCcceEEEeeeEECCCCcEEEEecCcchHhhhhhcCCCcEEEEeeCCCCCcceEEEEEEEEEEe
Q 018187 128 LDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSV 207 (359)
Q Consensus 128 L~~~~~a~LATvs~~~dG~P~~S~v~ya~d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~~~~~~~RVtl~G~a~~v 207 (359)
+...+.++|+|++ .+|.|.+-++.+-..+++.++|+++..++|.++|++||+|+|++..+. ....|.|.|.++.+
T Consensus 46 ~~~~~~~~LaTvd--~~G~P~~R~v~lr~~~~~~l~F~T~~~S~K~~eL~~np~v~l~f~~~~---~~~qvrv~G~a~~~ 120 (217)
T TIGR00558 46 LTEPNAMTLSTVD--ESGRPSSRMVLLKELDERGFVFYTNYGSRKGHQIETNPNAALVFFWPD---LERQVRVEGKVEKL 120 (217)
T ss_pred CCCCceEEEEEEC--CCCCEEEEEEEEEEECCCcEEEEECCCChHHHHHHhCCcEEEEEEeCC---CCEEEEEEEEEEEC
Confidence 3456779999998 789999988877433344599999999999999999999999998865 24578999999998
Q ss_pred cchhHHHHHH---------------------------H---HHHhCCCCccccCCCeEEEEEEEeEEEEeec
Q 018187 208 AEKDKAAIRA---------------------------V---YLAKHPNAFWVDFGDFQFMRIEPKAVRYVSG 249 (359)
Q Consensus 208 ~d~e~~~l~~---------------------------~---y~~rhP~~~~~~~~df~l~rL~pe~v~~V~G 249 (359)
++++.++.-+ . +..++++......+.|..|+|.|+++-|..+
T Consensus 121 ~~~~~~~~w~~~~~~sr~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~~p~p~~f~~~~l~p~~vEf~~l 192 (217)
T TIGR00558 121 PREESDAYFKSRPRGSRIGAWASRQSDVISNREELESKALKNTEKFEDAEIPRPDYWGGYRVVPEEIEFWQG 192 (217)
T ss_pred CHHHHHHHHHhCChhhcceEEcCCCCcccCCHHHHHHHHHHHHhhccCCCCCCCCceEEEEEECCEEEEccC
Confidence 7653211111 0 0111111111223568999999999988754
No 18
>PRK06733 hypothetical protein; Provisional
Probab=98.32 E-value=2.3e-05 Score=69.07 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=87.8
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeeE--ECCCCcEEEEecCcchHhhhhhcCCCcEEEEeeCCCCCcceEEE
Q 018187 122 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFA--CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVIT 199 (359)
Q Consensus 122 e~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya--~d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~~~~~~~RVt 199 (359)
++..++|+.....+|+|++. .+|.|+.+++.++ .| +..+.|.....+.-.+||++||++++.+.+++. ..+
T Consensus 11 ~el~~~L~~~~~~~laTv~k-edG~Pnv~~Iswv~a~d-~~tIr~A~~~~skT~~NLk~Np~v~I~~~~~~~-----~yq 83 (151)
T PRK06733 11 EDLVQLLRKERIVTLATTDF-EKQVPNVSAISWVYAVS-KTSIRFAVDQRSRIVENIRHNPGVVLTIIANES-----VYS 83 (151)
T ss_pred HHHHHHHcCCceEEEEEEcc-CCCceeEEEEEEEEEcC-CCEEEEEEccCcHhHHHHhhCCcEEEEEEeCCc-----EEE
Confidence 68999999999999999972 3899999998854 45 468999999999999999999999999998752 278
Q ss_pred EEEEEEEecchhHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEeeccccc
Q 018187 200 LHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATA 253 (359)
Q Consensus 200 l~G~a~~v~d~e~~~l~~~y~~rhP~~~~~~~~df~l~rL~pe~v~~V~GFG~a 253 (359)
+.|.++.+.+.- + ..| -..+++.+++++++=+--.|..
T Consensus 84 IkG~a~i~~e~i-e--------~vp-------lk~s~vei~I~eVrdv~FyGa~ 121 (151)
T PRK06733 84 ISGAAEILTDRM-E--------GVP-------LKLALIEVNVEEVRDVMFYGAK 121 (151)
T ss_pred EEEEEEEEeeec-c--------ccc-------ceEEEEEEEEEEEEEeeeccce
Confidence 999999886430 0 000 1478999999999988766765
No 19
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=98.26 E-value=2.1e-05 Score=71.92 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=86.7
Q ss_pred HhcCCeEEEEeecCCCCCcceEEEeeeE-ECCCCcEEEEecCcchHhhhhhcCCCcEEEEeeCCCCCcceEEEEEEEEEE
Q 018187 128 LDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATS 206 (359)
Q Consensus 128 L~~~~~a~LATvs~~~dG~P~~S~v~ya-~d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~~~~~~~RVtl~G~a~~ 206 (359)
+...+-.+|||++ .+|.|.+-+|-.- +|+.| ++|+++-.|+|.+.|++||++++++.-.+ ....|.+.|.++.
T Consensus 43 ~~ePnAm~lATvd--~~G~P~~R~VLLK~~DerG-fvFyTN~~S~Kg~eLa~np~Aal~F~W~~---L~RQVrv~G~ve~ 116 (214)
T COG0259 43 VNEPNAMTLATVD--EQGRPSSRIVLLKELDERG-FVFYTNYGSRKGRELAANPYAALLFPWKE---LERQVRVEGRVER 116 (214)
T ss_pred cCCCceeEEEeec--CCCCceeeEEEecccCCCc-EEEEeccCCcchhhHhhCcceeEEecchh---ccceEEEeeeeee
Confidence 6677889999998 7999999887754 46666 78889999999999999999999997755 2236899999999
Q ss_pred ecchhH------------------------------HHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEeec
Q 018187 207 VAEKDK------------------------------AAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSG 249 (359)
Q Consensus 207 v~d~e~------------------------------~~l~~~y~~rhP~~~~~~~~df~l~rL~pe~v~~V~G 249 (359)
|+++|. ++....|.++|+.....-.+.+.-|||.|+.|-|-.|
T Consensus 117 vs~eesd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae~~~kf~~~~iP~P~~WgG~ri~p~~iEFWqg 189 (214)
T COG0259 117 VSDEESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAELTAKFADGEIPRPPHWGGFRIVPESIEFWQG 189 (214)
T ss_pred CCHHHHHHHHhcCCCcCccchhhccCccccCCHHHHHHHHHHHHHhcCCCCCCCCCCccceEeeeeEEEEecC
Confidence 986542 2223334445554432223456789999999999854
No 20
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=98.21 E-value=3.7e-05 Score=79.28 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=84.0
Q ss_pred HhcCCeEEEEeecCCCCCcceEEEeee-EECCCCcEEEEecCcchHhhhhhcCCCcEEEEeeCCCCCcceEEEEEEEEEE
Q 018187 128 LDRSVRGMLSTFSQKYEGYPSGSMVDF-ACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATS 206 (359)
Q Consensus 128 L~~~~~a~LATvs~~~dG~P~~S~v~y-a~d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~~~~~~~RVtl~G~a~~ 206 (359)
+...+..+|||++ .+|.|.+-.|-+ .+|++| ++|++.-.|+|.++|++||+|++++..+. ....|.+.|.++.
T Consensus 286 ~~ep~am~LATvd--~~G~P~~R~VlLk~~d~~g-~~F~Tn~~S~K~~eL~~Np~aal~F~w~~---~~rQvRv~G~a~~ 359 (462)
T PLN03049 286 LREPNAMTLATAG--EDGRPSARIVLLKGVDKRG-FVWYTNYDSRKAHELSANPKASLVFYWDG---LHRQVRVEGSVEK 359 (462)
T ss_pred CCCCCeeEEEEEC--CCCCeeEEEEEEeEEcCCc-EEEEECCCCHHHHHHhhCCcEEEEeecCC---CCEEEEEEEEEEE
Confidence 3467899999998 799999988765 356666 58889999999999999999999998754 3347899999999
Q ss_pred ecchhHHHH------------------------------HHHHHHhCCCC-ccccCCCeEEEEEEEeEEEEeec
Q 018187 207 VAEKDKAAI------------------------------RAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSG 249 (359)
Q Consensus 207 v~d~e~~~l------------------------------~~~y~~rhP~~-~~~~~~df~l~rL~pe~v~~V~G 249 (359)
+++++.++. .+.+..++++. .....+.|..|++.|+++-|..|
T Consensus 360 ~~~~~s~~yf~~rp~~sq~~a~as~qs~~i~~~~~l~~~~~~~~~~~~~~~~~p~p~~w~g~~v~p~~iEfwq~ 433 (462)
T PLN03049 360 VSEEESDQYFHSRPRGSQIGALVSKQSTVIPGRHILDQSYKELEAKYADSSAIPKPKHWGGYRLKPELIEFWQG 433 (462)
T ss_pred CCHHHHHHHHHhCChhhhhhheeCCCCCcCCCHHHHHHHHHHHHHhhccCCCCCCCCceEEEEEEeeEEEEccC
Confidence 875432111 11111222221 12233568999999999988754
No 21
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=7.6e-05 Score=62.93 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=89.9
Q ss_pred HHHHHHhcCCeEEEEeecCCCCCcceEEEeeeEECCCCcEEEEecCcchHhhhhhcCCCcEEEEeeCCCCCcceEEEEEE
Q 018187 123 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHG 202 (359)
Q Consensus 123 ~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~~~~~~~RVtl~G 202 (359)
++-++|+.+..+.|||+. +|.|-.-+..+....++.+||++...-.-++.|++||.++++=..-+. .-|.|+|
T Consensus 3 d~leFLken~~~~laTve---~gkPrvRpfq~~f~~g~KlYfcTantK~~yKqik~np~vefcg~~kdg----~~vrlrg 75 (132)
T COG5015 3 DPLEFLKENKSVALATVE---DGKPRVRPFQVMFVEGEKLYFCTANTKPYYKQIKKNPEVEFCGMDKDG----VMVRLRG 75 (132)
T ss_pred cHHHHHHhCCcEEEEEcc---CCCcceeeccceeeeCCEEEEEeCCChHHHHHHhhCCCeEEEEecCCc----eEEEEee
Confidence 467899999999999995 899988887777666789999888888889999999999997655442 2466999
Q ss_pred EEEEecchhHHHHHHHHHHhCCCC--ccc--cCCCeEEEEEEEeEEEE
Q 018187 203 DATSVAEKDKAAIRAVYLAKHPNA--FWV--DFGDFQFMRIEPKAVRY 246 (359)
Q Consensus 203 ~a~~v~d~e~~~l~~~y~~rhP~~--~~~--~~~df~l~rL~pe~v~~ 246 (359)
.++.+++-+ +.++.++.+|-. .|. +.+-|.++.++..++..
T Consensus 76 ~a~f~~nie---lkk~ale~yP~Lkeiy~tddnpifevfyld~~e~~m 120 (132)
T COG5015 76 RAEFVENIE---LKKLALEIYPVLKEIYPTDDNPIFEVFYLDSGEGEM 120 (132)
T ss_pred eEEeccchH---HHHHHhhhchhhHhhccCCCCCEEEEEEEeeccEEE
Confidence 999998743 566677788876 453 55678888888665554
No 22
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=97.76 E-value=0.00052 Score=71.91 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=83.3
Q ss_pred hcCCeEEEEeecCCCCCcceEEEeeeE-ECCCCcEEEEecCcchHhhhhhcCCCcEEEEeeCCCCCcceEEEEEEEEEEe
Q 018187 129 DRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSV 207 (359)
Q Consensus 129 ~~~~~a~LATvs~~~dG~P~~S~v~ya-~d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~~~~~~~RVtl~G~a~~v 207 (359)
...+..+|||++ .+|.|.+-.|-+- +|++| ++|++.-.|+|.+.|++||+|++++...+ ....|.+.|.++.+
T Consensus 369 ~eP~Am~LATv~--~~G~P~~RtVlLk~~d~~g-~~F~Tn~~S~K~~el~~Np~aal~F~w~~---l~rQVRi~G~v~~~ 442 (544)
T PLN02918 369 REPNAMALSTAN--KDGKPSSRMVLLKGVDKNG-FVWYTNYESQKGSDLSENPSAALLFYWEE---LNRQVRVEGSVQKV 442 (544)
T ss_pred CCCccceEEeeC--CCCCeeeEEEEEeEEcCCc-eEEEECCCChhHHHHHhCCcEEEEeeecc---ccEEEEEEEEEEEC
Confidence 356788999998 7999999877653 56655 66889999999999999999999998865 23468999999998
Q ss_pred cchhH------------------------------HHHHHHHHHhCCCCc-cccCCCeEEEEEEEeEEEEeec
Q 018187 208 AEKDK------------------------------AAIRAVYLAKHPNAF-WVDFGDFQFMRIEPKAVRYVSG 249 (359)
Q Consensus 208 ~d~e~------------------------------~~l~~~y~~rhP~~~-~~~~~df~l~rL~pe~v~~V~G 249 (359)
+++|. ++..+.+.+++++.. ..-.+.+.-|+|.|+++.|..|
T Consensus 443 ~~~es~~yf~sRp~~Sqi~A~aS~QS~~i~~r~~L~~~~~~~~~~~~~~~~vp~P~~WgGy~v~P~~iEFWQg 515 (544)
T PLN02918 443 PESESENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELEKKYSDGSVIPKPKNWGGYRLKPNLFEFWQG 515 (544)
T ss_pred CHHHHHHHHHhCCccccceEEecCCCCcCCCHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEecCEEEECCC
Confidence 76531 111122222333221 2223567899999999999865
No 23
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [].; PDB: 2OL5_A.
Probab=97.63 E-value=0.0017 Score=58.45 Aligned_cols=122 Identities=17% Similarity=0.136 Sum_probs=79.5
Q ss_pred cHHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeeEECC----CCcEEEEecCcchHhhhhhcCCCcEEEEeeCC-----
Q 018187 120 PLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDA----DGTPILAVSSLAVHTKDLLANPKCSLLVARDP----- 190 (359)
Q Consensus 120 ~ae~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d~----dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~----- 190 (359)
..+++++|+++..+|+|.|.+ +|.|.+|.++|..+. .|.++.+++..-++.+.+..+..|-+.+..+.
T Consensus 11 d~~~l~~~i~~~pfa~Lvt~~---~~~~~athlP~~l~~~~~~~~~L~gHlAr~NP~~~~l~~~~~vl~iF~Gp~aYISP 87 (169)
T PF04299_consen 11 DPEELRAFIRAHPFATLVTNG---DGGPVATHLPFLLDEDDGGRGTLIGHLARANPQWKALDDGQEVLVIFQGPHAYISP 87 (169)
T ss_dssp -HCHHHHHHHHS-EEEEEEEE---TTEEEEEEEE-EE-T---TSSEEEEEEETTSGGGGGTT-TS-EEEEEEEEEEEE-C
T ss_pred CHHHHHHHHHhCCcEEEEEcC---CCCcceeeecEEEEeeeCCCCEEEEEeCCCCHhHhhcCCCCcEEEEEECCCeeECc
Confidence 346799999999999999976 677999999999984 57788888888899999988888888787754
Q ss_pred CCC-------------cceEEEEEEEEEEecch-hHHH----HHHHHHHhCCCC-cccc---------CCCeEEEEEEEe
Q 018187 191 EDR-------------TDLVITLHGDATSVAEK-DKAA----IRAVYLAKHPNA-FWVD---------FGDFQFMRIEPK 242 (359)
Q Consensus 191 ~~~-------------~~~RVtl~G~a~~v~d~-e~~~----l~~~y~~rhP~~-~~~~---------~~df~l~rL~pe 242 (359)
++. +...|.+.|+++.++++ +..+ +.+.|....+.. .+.+ .+...-|+|+++
T Consensus 88 sWYp~k~~~~~~VPTWNY~aVh~~G~~~~~~d~~~~~~~l~~l~~~~E~~~~~pW~~~~~~~~~~~~ll~~IvGfei~I~ 167 (169)
T PF04299_consen 88 SWYPTKAEHGKVVPTWNYAAVHAYGTVRIIDDPDWLRAHLDRLTAHFEPDRPPPWSVDDAPEDYIERLLRGIVGFEIEIT 167 (169)
T ss_dssp CCS----STTS---EEEEEEEEEEEEEEE---HHHHHHHHHHHHHHHS-T-T----S-------HCHHHCTEEEEEEEEE
T ss_pred hhhcccCcCCCCCCCcCEEEEEEEEEEEEEeCHHHHHHHHHHHHHHhCCCCCCCcccccCCHHHHHHHhCCeEEEEEEEE
Confidence 111 56789999999999654 4433 344444433221 1112 245567788877
Q ss_pred EE
Q 018187 243 AV 244 (359)
Q Consensus 243 ~v 244 (359)
++
T Consensus 168 ~i 169 (169)
T PF04299_consen 168 RI 169 (169)
T ss_dssp EE
T ss_pred eC
Confidence 64
No 24
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=97.57 E-value=0.00097 Score=56.13 Aligned_cols=88 Identities=19% Similarity=0.179 Sum_probs=68.4
Q ss_pred CCeEEEEeecCCCCCcceEEEeeeEECCCCcEEEEecCc-----chHhhhhhcCCCcEEEEeeCCCCCcceEEEEEEEEE
Q 018187 131 SVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSL-----AVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 205 (359)
Q Consensus 131 ~~~a~LATvs~~~dG~P~~S~v~ya~d~dG~~~~~vS~~-----s~htrNL~~dpRvSL~V~~~~~~~~~~RVtl~G~a~ 205 (359)
...+.|-|.+. .+|.|+.+++.|..++ |.+|+..|.. +.-++||++||+|++.+.. -+..+.++
T Consensus 7 ~p~~lL~t~GR-kSG~~r~tpl~~~~~~-~~~~vvas~~G~~~~p~W~~Nl~A~p~v~v~~~g---------~~~~~~ar 75 (113)
T TIGR00026 7 LPVLLLTTTGR-KSGKPRTTPVTYVRHD-PGVLIVASNGGAPRHPDWYKNLKANPRVRVRVGG---------KTFVATAR 75 (113)
T ss_pred CCEEEEEECCC-CCCcEEEEEEEEEEEC-CEEEEEEecCCCCCCCHHHHHhhhCCcEEEEECC---------EEEEEEEE
Confidence 34677777753 6899999999999886 4566653432 3459999999999998722 25789999
Q ss_pred EecchhHHHHHHHHHHhCCCC-ccc
Q 018187 206 SVAEKDKAAIRAVYLAKHPNA-FWV 229 (359)
Q Consensus 206 ~v~d~e~~~l~~~y~~rhP~~-~~~ 229 (359)
.++++|.+++...+.+++|.- .|.
T Consensus 76 ~v~~~e~~~~~~~~~~~~p~~~~yq 100 (113)
T TIGR00026 76 LVSGDERDQLWAGVVRLYPRYGRYQ 100 (113)
T ss_pred ECCchhHHHHHHHHHHHCcCHHHHH
Confidence 999988889999999999975 554
No 25
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=97.06 E-value=0.0054 Score=52.96 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=68.8
Q ss_pred CCeEEEEeecCCCCCcceEEEeeeEECCCCcEEEEecC-----cchHhhhhhcCCCcEEEEeeCCCCCcceEEEEEEEEE
Q 018187 131 SVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSS-----LAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 205 (359)
Q Consensus 131 ~~~a~LATvs~~~dG~P~~S~v~ya~d~dG~~~~~vS~-----~s~htrNL~~dpRvSL~V~~~~~~~~~~RVtl~G~a~ 205 (359)
...+.|.|.+. ..|.|+.+++.|..++ |++++..+. ...=++||+++|.|.+.+.. -+..+.++
T Consensus 25 ~~~~lLtt~GR-kSG~~r~tpl~~~~~g-~~~~vva~~gG~~~~p~W~~Nl~A~p~v~v~~~g---------~~~~~~a~ 93 (132)
T PF04075_consen 25 MPVLLLTTTGR-KSGRPRRTPLVYVRDG-GRLVVVASNGGAPRHPDWYRNLRANPEVTVEVGG---------RRRRVRAR 93 (132)
T ss_dssp EEEEEEEEE-T-TT-SEEEEEEEEEEET-TEEEEE-SGGGCSSS-HHHHHHHHHSEEEEEETT---------EEEEEEEE
T ss_pred CcEEEEEECCC-CCCCeEEEEEEEEEeC-CEEEEEEccCCCCCCChhHHhhhhCCcEEEEECC---------EEEEEEEE
Confidence 34788888864 6899999999999875 567765553 23458999999999887622 36788889
Q ss_pred EecchhHHHHHHHHHHhCCCC-cccc--CCCeEEEEEEE
Q 018187 206 SVAEKDKAAIRAVYLAKHPNA-FWVD--FGDFQFMRIEP 241 (359)
Q Consensus 206 ~v~d~e~~~l~~~y~~rhP~~-~~~~--~~df~l~rL~p 241 (359)
.++++|.+++.+.+.+.+|.- .|.. .-.+-++.|+|
T Consensus 94 ~~~~~er~~~~~~~~~~~p~~~~y~~~t~R~ipvv~l~p 132 (132)
T PF04075_consen 94 EVTDDERARLWARLVAAYPGYADYQARTGRRIPVVVLEP 132 (132)
T ss_dssp EE-HHHHHHHHHHHHHHSTHHHHHHHHCSSTS-EEEEEE
T ss_pred EcCchHHHHHHHHHHHHCcChHHhcccCCCEeeEEEecC
Confidence 998888888889999998873 3321 12345666665
No 26
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]
Probab=96.90 E-value=0.0024 Score=58.54 Aligned_cols=87 Identities=23% Similarity=0.294 Sum_probs=65.7
Q ss_pred HhcCCeEEEEeecCCCCCcceEEEeee-EECCCCcEEEEecC-cchHhhhhhcCCCcEEEEeeCCCCCcceEEEEEEEEE
Q 018187 128 LDRSVRGMLSTFSQKYEGYPSGSMVDF-ACDADGTPILAVSS-LAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 205 (359)
Q Consensus 128 L~~~~~a~LATvs~~~dG~P~~S~v~y-a~d~dG~~~~~vS~-~s~htrNL~~dpRvSL~V~~~~~~~~~~RVtl~G~a~ 205 (359)
+...+..+|||++ .||.|..-+|-| .+|.+|.. |++.- .+++.+||..||.+++++..+. +. ..|.+.|.++
T Consensus 53 ~~~~~am~LsT~~--~d~rvssRmvLlKgl~~~gf~-fytn~~~srk~kdL~~NP~Aal~Fyw~~--l~-rQVRveG~ve 126 (228)
T KOG2586|consen 53 IGEINAMTLSTAD--KDGRVSSRMVLLKGLDHDGFV-FYTNYGTSRKGKDLQENPNAALLFYWED--LN-RQVRVEGIVE 126 (228)
T ss_pred cCchhheeehhcc--ccCCcceeeeeeecccCCCeE-EEeeccccccccccccCCcceEEEeehh--cc-ceeEEEeccc
Confidence 3445678899998 699999888776 46778855 45654 8999999999999999998876 11 2688999999
Q ss_pred EecchhHHHHHHHHHHhCC
Q 018187 206 SVAEKDKAAIRAVYLAKHP 224 (359)
Q Consensus 206 ~v~d~e~~~l~~~y~~rhP 224 (359)
.+++++. ++|.+.-|
T Consensus 127 ~l~~ee~----e~yf~srp 141 (228)
T KOG2586|consen 127 KLPREEA----EAYFKSRP 141 (228)
T ss_pred cCCHHHH----HHHHhcCc
Confidence 9987653 45555444
No 27
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=95.99 E-value=0.072 Score=43.87 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=54.6
Q ss_pred hcCCeEEEEeecCCCCCcceEEEeee-EECCC-----CcEEEEecCcchHhhhhh-cCCCcEEEEeeCCCCCcceEEEEE
Q 018187 129 DRSVRGMLSTFSQKYEGYPSGSMVDF-ACDAD-----GTPILAVSSLAVHTKDLL-ANPKCSLLVARDPEDRTDLVITLH 201 (359)
Q Consensus 129 ~~~~~a~LATvs~~~dG~P~~S~v~y-a~d~d-----G~~~~~vS~~s~htrNL~-~dpRvSL~V~~~~~~~~~~RVtl~ 201 (359)
...++.+|||++ .++|.|.+-.|-| .++.+ ..+.|++..-+.|+..|. .||++++++..++ ....+.+.
T Consensus 18 ~~~~~~~LATv~-~~~~~P~~RTvVlRgf~~~~~~~~~~L~f~TD~RS~Kv~~l~~~~p~~e~~~~~~~---~~~Q~Ri~ 93 (100)
T PF12766_consen 18 HPFRYFQLATVD-PPDGSPRVRTVVLRGFDPDLKPESDLLTFHTDARSPKVAQLASANPRVELVFWFPE---TREQFRIR 93 (100)
T ss_dssp CGGGCEEEEEEE--TTTEEEEEEEEEEEEETT----TTEEEEEEETTSHHHHHHH-H--EEEEEEEECC---CTEEEEEE
T ss_pred CCCceeEEEEec-CCCCCCceeEEEEcCcccccccccCeEEEEecCCchhHHHHhccCCCEEEEEEeCC---ccEEEEEE
Confidence 457789999997 3589998754433 34443 458888888899999999 9999999998875 33467788
Q ss_pred EEEEEe
Q 018187 202 GDATSV 207 (359)
Q Consensus 202 G~a~~v 207 (359)
|++..+
T Consensus 94 G~a~ii 99 (100)
T PF12766_consen 94 GRASII 99 (100)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 888765
No 28
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=95.42 E-value=0.14 Score=47.14 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=74.7
Q ss_pred CcHHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeeEECCC----CcEEEEecCcchHhhhhhcCCCcEEEEeeCC---C
Q 018187 119 PPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD----GTPILAVSSLAVHTKDLLANPKCSLLVARDP---E 191 (359)
Q Consensus 119 ~~ae~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d~d----G~~~~~vS~~s~htrNL~~dpRvSL~V~~~~---~ 191 (359)
+..+....|++...+|+|.|.. .|.|+++.++|.+++. |.++.+++....|.+.+.+...|=+++..++ +
T Consensus 10 ~d~~~L~a~ir~~pfgtlvt~~---~~~p~AthlP~ll~e~~~~~~~L~~HlAraNp~w~~~~~~~~vLvvFqgpdAYIS 86 (209)
T COG2808 10 EDPEVLHALIRAHPFGTLVTSG---GGGPFATHLPFLLNEEEGGEGVLIAHLARANPQWRGLEDGQPVLVVFQGPDAYIS 86 (209)
T ss_pred CCHHHHHHHHHhCCceEEEecc---CCccccccCceEEeccCCCceEEEeeecccCCcccccCCCCeEEEEEeCCCcccC
Confidence 3457899999999999999985 6899999999998753 4566666777788888876666666666654 1
Q ss_pred C---------------CcceEEEEEEEEEEecchhH-HHHHHHHHHhC
Q 018187 192 D---------------RTDLVITLHGDATSVAEKDK-AAIRAVYLAKH 223 (359)
Q Consensus 192 ~---------------~~~~RVtl~G~a~~v~d~e~-~~l~~~y~~rh 223 (359)
| .+...|-..|+++.++|++. +.+.......|
T Consensus 87 P~WY~sK~e~~~~VPTWNY~aVHayG~~~~~~D~~~~~~~~~~Lt~~~ 134 (209)
T COG2808 87 PAWYPSKRETPKVVPTWNYVAVHAYGTVRIIEDDEWLRELLARLTDEH 134 (209)
T ss_pred cccccccccCCCcCCCcceEEEEEecceeeeccHHHHHHHHHHHHHHh
Confidence 1 15668999999999998753 34444444333
No 29
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
Probab=91.03 E-value=1.4 Score=39.88 Aligned_cols=117 Identities=17% Similarity=0.183 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeeEECCC-CcEEEEecCc-chH-hhhhhcCCCcEEEEeeCCCCCcceEE
Q 018187 122 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD-GTPILAVSSL-AVH-TKDLLANPKCSLLVARDPEDRTDLVI 198 (359)
Q Consensus 122 e~aR~LL~~~~~a~LATvs~~~dG~P~~S~v~ya~d~d-G~~~~~vS~~-s~h-trNL~~dpRvSL~V~~~~~~~~~~RV 198 (359)
...|+++.....+.|+|++ .||.|-..+.+|+...| +.+.+.+.+. ..+ -+||..||++++......+. ..--
T Consensus 32 ~~~~e~~~~~~~~~laT~d--~dG~p~~~~~p~~qr~d~~~~~~v~d~~~~~~~~~~lgnn~~~tl~n~~~~~~--~~~f 107 (173)
T COG3576 32 NHYREFIQTSQLAALATVD--KDGPPNVDPIPFAQRGDPAGFTIVIDDNTAGKTDRNLGNNPKITLRNILRNRR--ALLF 107 (173)
T ss_pred HhhhhhhccccEEEEEEec--cCCCCCcCccchhhccCCCCceEEeCcccccccccccccCccceeEEeccCCc--cceE
Confidence 3577888889999999998 78999999999865433 3333445444 444 45689999999987775311 1123
Q ss_pred EEEEEEEEecchh-HHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEe
Q 018187 199 TLHGDATSVAEKD-KAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYV 247 (359)
Q Consensus 199 tl~G~a~~v~d~e-~~~l~~~y~~rhP~~~~~~~~df~l~rL~pe~v~~V 247 (359)
.+.|+++...+.. ..+..+.+.. .-.+++.-....+.+++++++
T Consensus 108 ~v~gt~~I~~~g~~~~~~~~~~~~-----~~~~l~pk~~~vv~v~~v~~~ 152 (173)
T COG3576 108 LVKGTARIQGRGAVYDAVVKLAAF-----LMDGLPPKSAIVVTVEEVYFL 152 (173)
T ss_pred EecceEEEEeccceehHHhhhhHh-----hccCCCCceeEEEEeehhhhh
Confidence 4444444332211 1111111111 112334456777888888887
No 30
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function.; PDB: 2IML_A 3B5M_C 2PTF_A 2NR4_A.
Probab=73.82 E-value=9.2 Score=34.48 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=41.1
Q ss_pred EEEEeecCCCCCcceEEEeeeEECCCCcEEEEecCcchHhhhhhcCCCcEEEEeeCC
Q 018187 134 GMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP 190 (359)
Q Consensus 134 a~LATvs~~~dG~P~~S~v~ya~d~dG~~~~~vS~~s~htrNL~~dpRvSL~V~~~~ 190 (359)
.++.|.+ .+ .|..+|+....++ +.+++..=..|...+||++++.+.+.|.+|.
T Consensus 3 ~IvtT~~--~~-~~N~APiGi~~~~-~~~~~~lf~gS~T~~Nl~~~~~~vvnit~Dp 55 (177)
T PF04289_consen 3 VIVTTKN--ED-EPNAAPIGIIRDG-DELIIRLFKGSHTYENLKETGYFVVNITDDP 55 (177)
T ss_dssp EEEEEES--TT--EEEEEEEEEESS-SEEEEEEETTSHHHHHHHHHSEEEEEE---H
T ss_pred EEEEECC--CC-CCcCCcEEEEEEC-CEEEEEEcCCCchHHHHhhCCEEEEEECCCH
Confidence 4567776 56 8999999988864 5688888889999999999999999998753
No 31
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=27.08 E-value=2.2e+02 Score=22.12 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=32.9
Q ss_pred HHHHHHHhc--CCeEEEEeecCCCCCcceEEEeeeEECCCCcEEEEecCcchHhhhhhcCCCcEEE
Q 018187 122 EEIRTVLDR--SVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLL 185 (359)
Q Consensus 122 e~aR~LL~~--~~~a~LATvs~~~dG~P~~S~v~ya~d~dG~~~~~vS~~s~htrNL~~dpRvSL~ 185 (359)
+.+.+|-.. .+.-+-+|+ +|.+|-+.+. ...+|..+|.++..-++...+...-.|++.
T Consensus 20 ~v~~~l~~~~~g~v~V~~tI----~g~~~~~sl~--p~g~G~~~Lpv~~~vRk~~g~~~Gd~V~v~ 79 (80)
T PF08922_consen 20 DVAEELGEGGWGRVPVRGTI----DGHPWRTSLF--PMGNGGYILPVKAAVRKAIGKEAGDTVEVT 79 (80)
T ss_dssp -HHHHH--S--S-EEEEEEE----TTEEEEEEEE--ESSTT-EEEEE-HHHHHHHT--TTSEEEEE
T ss_pred HHHHHhccccCCceEEEEEE----CCEEEEEEEE--ECCCCCEEEEEcHHHHHHcCCCCCCEEEEE
Confidence 334444444 567777888 4899877432 366788888887766776666665555554
No 32
>PHA02707 hypothetical protein; Provisional
Probab=22.89 E-value=24 Score=23.11 Aligned_cols=12 Identities=50% Similarity=1.256 Sum_probs=9.6
Q ss_pred eeecccccceee
Q 018187 67 VYSLCTCDVFLF 78 (359)
Q Consensus 67 ~~~~~~~~~~~~ 78 (359)
-+|||.|-||+.
T Consensus 3 nfslcl~pvfil 14 (37)
T PHA02707 3 NFSLCLCPVFIL 14 (37)
T ss_pred ceeeehhhHHHH
Confidence 479999999863
No 33
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=21.10 E-value=3.3e+02 Score=19.71 Aligned_cols=50 Identities=22% Similarity=0.405 Sum_probs=32.0
Q ss_pred EEEEeecCCCCCcceEEEeeeEECCCC--cEEEEecCcchHh-hhhhcCCCcEEEEeeCC
Q 018187 134 GMLSTFSQKYEGYPSGSMVDFACDADG--TPILAVSSLAVHT-KDLLANPKCSLLVARDP 190 (359)
Q Consensus 134 a~LATvs~~~dG~P~~S~v~ya~d~dG--~~~~~vS~~s~ht-rNL~~dpRvSL~V~~~~ 190 (359)
|++...+. ..|+ .|...++| .++|+.+...... +.|...-+|++.+....
T Consensus 3 G~V~~~~~-~kgy------GFI~~~~~~~diFfh~s~~~~~~~~~l~~G~~V~F~~~~~~ 55 (66)
T PF00313_consen 3 GTVKWFDD-EKGY------GFITSDDGGEDIFFHISDLSGNGFRSLKEGDRVEFEVEEGK 55 (66)
T ss_dssp EEEEEEET-TTTE------EEEEETTSSSEEEEEGGGBCSSSSTS--TTSEEEEEEEECT
T ss_pred EEEEEEEC-CCCc------eEEEEcccceeEEeccccccccccccCCCCCEEEEEEEECC
Confidence 55666642 2454 33333333 5889889888776 88889999999998854
No 34
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=20.47 E-value=1.2e+02 Score=23.24 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=25.4
Q ss_pred eEEEeeeEECCCCcEEEEecCcchHhhhhhcCCC
Q 018187 148 SGSMVDFACDADGTPILAVSSLAVHTKDLLANPK 181 (359)
Q Consensus 148 ~~S~v~ya~d~dG~~~~~vS~~s~htrNL~~dpR 181 (359)
-|+-..|+.. ||.+++..|...++.-.+.+|||
T Consensus 15 PGtG~m~Vr~-Dg~v~~FcssKc~k~~~~~rnPR 47 (66)
T COG2075 15 PGTGIMYVRN-DGKVLRFCSSKCEKLFKLGRNPR 47 (66)
T ss_pred CCceEEEEec-CCeEEEEechhHHHHHHccCCCc
Confidence 3455568876 68888889999888777788996
Done!