Query 018188
Match_columns 359
No_of_seqs 499 out of 2971
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:53:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02661 Putative thiazole syn 100.0 1.5E-56 3.3E-61 423.1 24.8 355 1-359 3-357 (357)
2 KOG2960 Protein involved in th 100.0 4.2E-52 9.1E-57 358.3 19.1 320 1-336 1-327 (328)
3 COG1635 THI4 Ribulose 1,5-bisp 100.0 2.1E-45 4.6E-50 318.8 18.0 259 63-328 2-261 (262)
4 TIGR00292 thiazole biosynthesi 100.0 6E-39 1.3E-43 295.5 20.3 252 71-327 1-254 (254)
5 PRK04176 ribulose-1,5-biphosph 100.0 7.8E-38 1.7E-42 288.8 20.2 254 68-328 2-256 (257)
6 PF01946 Thi4: Thi4 family; PD 100.0 4.4E-38 9.6E-43 275.1 14.3 229 75-308 1-230 (230)
7 PF03486 HI0933_like: HI0933-l 99.9 1.2E-21 2.7E-26 191.7 18.0 205 92-321 1-248 (409)
8 COG2081 Predicted flavoprotein 99.9 1.6E-20 3.4E-25 177.9 20.2 205 91-321 3-247 (408)
9 TIGR00275 flavoprotein, HI0933 99.6 9.6E-15 2.1E-19 143.6 18.6 202 95-322 1-242 (400)
10 PRK06175 L-aspartate oxidase; 99.6 2.7E-14 5.9E-19 141.8 16.8 156 90-258 3-214 (433)
11 PRK06452 sdhA succinate dehydr 99.6 2.9E-14 6.3E-19 146.1 16.3 143 90-243 4-198 (566)
12 PLN00128 Succinate dehydrogena 99.6 3.9E-14 8.5E-19 146.5 17.3 143 91-244 50-251 (635)
13 PTZ00139 Succinate dehydrogena 99.6 4.1E-14 8.9E-19 146.1 16.8 144 90-244 28-230 (617)
14 PRK06069 sdhA succinate dehydr 99.6 3.2E-14 6.8E-19 146.3 15.7 144 90-243 4-200 (577)
15 PRK07121 hypothetical protein; 99.6 8.3E-14 1.8E-18 140.6 17.2 141 90-243 19-239 (492)
16 PRK09078 sdhA succinate dehydr 99.6 6.4E-14 1.4E-18 144.3 16.6 144 90-244 11-213 (598)
17 PRK08958 sdhA succinate dehydr 99.6 5.2E-14 1.1E-18 144.6 15.8 142 91-243 7-206 (588)
18 PF00890 FAD_binding_2: FAD bi 99.6 5.2E-14 1.1E-18 139.0 15.1 141 93-244 1-204 (417)
19 PRK09231 fumarate reductase fl 99.6 8.9E-14 1.9E-18 142.9 16.3 146 90-244 3-197 (582)
20 PRK08274 tricarballylate dehyd 99.6 1.6E-13 3.4E-18 137.7 17.7 141 91-243 4-192 (466)
21 PRK06481 fumarate reductase fl 99.5 1.7E-13 3.7E-18 138.8 17.6 142 91-244 61-252 (506)
22 TIGR01176 fum_red_Fp fumarate 99.5 1.3E-13 2.8E-18 141.4 16.9 145 91-244 3-196 (580)
23 PRK07395 L-aspartate oxidase; 99.5 8.2E-14 1.8E-18 142.2 15.2 158 88-258 6-222 (553)
24 PRK05945 sdhA succinate dehydr 99.5 1.1E-13 2.3E-18 142.2 16.0 144 91-244 3-198 (575)
25 PRK07573 sdhA succinate dehydr 99.5 1E-13 2.2E-18 143.8 15.8 143 90-243 34-232 (640)
26 PLN02815 L-aspartate oxidase 99.5 7.9E-14 1.7E-18 143.1 14.8 144 90-244 28-223 (594)
27 PRK07803 sdhA succinate dehydr 99.5 1.6E-13 3.5E-18 142.1 17.1 159 90-258 7-238 (626)
28 TIGR00551 nadB L-aspartate oxi 99.5 1.4E-13 2.9E-18 138.9 16.0 141 91-244 2-190 (488)
29 PRK12834 putative FAD-binding 99.5 1.3E-13 2.8E-18 141.0 16.1 150 90-244 3-228 (549)
30 PRK06854 adenylylsulfate reduc 99.5 2.2E-13 4.8E-18 140.6 16.7 145 90-243 10-195 (608)
31 PRK07804 L-aspartate oxidase; 99.5 2.8E-13 6.1E-18 138.1 16.8 160 91-258 16-235 (541)
32 PRK06263 sdhA succinate dehydr 99.5 3.1E-13 6.6E-18 138.0 16.9 157 90-258 6-222 (543)
33 TIGR01812 sdhA_frdA_Gneg succi 99.5 3.8E-13 8.2E-18 138.1 17.0 140 93-243 1-191 (566)
34 PRK07057 sdhA succinate dehydr 99.5 3.7E-13 8E-18 138.5 16.6 144 90-244 11-212 (591)
35 PRK09077 L-aspartate oxidase; 99.5 3.4E-13 7.4E-18 137.4 16.2 144 89-243 6-207 (536)
36 PRK07512 L-aspartate oxidase; 99.5 2.4E-13 5.2E-18 137.8 14.2 157 88-258 6-222 (513)
37 PRK08641 sdhA succinate dehydr 99.5 6E-13 1.3E-17 136.9 17.2 144 91-244 3-201 (589)
38 PRK08626 fumarate reductase fl 99.5 3.1E-13 6.6E-18 140.5 14.9 144 90-244 4-221 (657)
39 PRK10157 putative oxidoreducta 99.5 6.1E-13 1.3E-17 132.0 15.3 135 91-243 5-164 (428)
40 PRK06185 hypothetical protein; 99.5 1.3E-12 2.9E-17 128.5 17.2 137 89-244 4-170 (407)
41 PRK08275 putative oxidoreducta 99.5 8E-13 1.7E-17 135.3 16.1 145 90-244 8-201 (554)
42 COG0644 FixC Dehydrogenases (f 99.5 4.9E-13 1.1E-17 131.4 13.6 138 91-244 3-153 (396)
43 PTZ00306 NADH-dependent fumara 99.5 8.5E-13 1.8E-17 145.1 16.5 150 87-244 405-621 (1167)
44 PRK12837 3-ketosteroid-delta-1 99.5 1.4E-12 3E-17 132.4 16.2 140 91-243 7-235 (513)
45 PRK08071 L-aspartate oxidase; 99.5 1.1E-12 2.4E-17 132.8 15.5 154 91-258 3-215 (510)
46 PF01266 DAO: FAD dependent ox 99.5 2.2E-12 4.9E-17 123.4 16.6 132 93-241 1-201 (358)
47 PRK08205 sdhA succinate dehydr 99.5 1.3E-12 2.8E-17 134.4 15.7 141 91-243 5-206 (583)
48 PRK12845 3-ketosteroid-delta-1 99.5 1.4E-12 2.9E-17 133.5 15.6 44 90-135 15-58 (564)
49 PRK10015 oxidoreductase; Provi 99.4 8.3E-13 1.8E-17 131.1 13.2 138 91-245 5-166 (429)
50 PRK08013 oxidoreductase; Provi 99.4 3.1E-12 6.7E-17 125.8 16.6 137 91-244 3-169 (400)
51 PRK12844 3-ketosteroid-delta-1 99.4 2E-12 4.3E-17 132.4 15.7 141 91-244 6-270 (557)
52 TIGR02061 aprA adenosine phosp 99.4 2.2E-12 4.7E-17 132.7 16.0 141 93-244 1-192 (614)
53 PF01494 FAD_binding_3: FAD bi 99.4 1.7E-12 3.8E-17 124.1 13.9 134 91-243 1-172 (356)
54 PRK08401 L-aspartate oxidase; 99.4 2.6E-12 5.6E-17 128.9 15.1 135 92-244 2-176 (466)
55 PRK08773 2-octaprenyl-3-methyl 99.4 5.8E-12 1.2E-16 123.5 17.2 135 90-243 5-169 (392)
56 TIGR02032 GG-red-SF geranylger 99.4 5.6E-12 1.2E-16 117.9 15.7 130 92-244 1-149 (295)
57 PF12831 FAD_oxidored: FAD dep 99.4 1.9E-13 4.2E-18 135.6 5.4 136 93-241 1-148 (428)
58 PRK13800 putative oxidoreducta 99.4 4.4E-12 9.5E-17 136.4 16.2 145 90-244 12-206 (897)
59 TIGR01813 flavo_cyto_c flavocy 99.4 5.5E-12 1.2E-16 125.5 15.3 139 93-244 1-193 (439)
60 PRK12835 3-ketosteroid-delta-1 99.4 4.1E-12 8.9E-17 130.6 14.5 40 91-131 11-50 (584)
61 TIGR01811 sdhA_Bsu succinate d 99.4 4.4E-12 9.6E-17 130.8 14.7 155 94-258 1-221 (603)
62 COG0654 UbiH 2-polyprenyl-6-me 99.4 7.6E-12 1.6E-16 122.6 15.7 131 91-243 2-162 (387)
63 PRK07364 2-octaprenyl-6-methox 99.4 1.3E-11 2.8E-16 121.8 16.7 136 91-244 18-182 (415)
64 PRK12842 putative succinate de 99.4 1.1E-11 2.3E-16 127.5 16.5 44 88-132 6-49 (574)
65 PRK11101 glpA sn-glycerol-3-ph 99.4 7.6E-12 1.6E-16 127.8 15.3 142 91-243 6-211 (546)
66 PRK07045 putative monooxygenas 99.4 1.2E-11 2.6E-16 121.0 16.2 132 91-244 5-166 (388)
67 COG0579 Predicted dehydrogenas 99.4 1.2E-11 2.6E-16 120.8 15.9 139 91-243 3-211 (429)
68 COG1249 Lpd Pyruvate/2-oxoglut 99.4 1.5E-12 3.2E-17 129.0 9.7 216 90-340 3-241 (454)
69 PRK09126 hypothetical protein; 99.4 1.3E-11 2.8E-16 120.8 16.3 135 91-244 3-168 (392)
70 COG0029 NadB Aspartate oxidase 99.4 3.6E-12 7.8E-17 124.0 12.1 141 93-245 9-198 (518)
71 PRK05192 tRNA uridine 5-carbox 99.4 7.2E-12 1.6E-16 127.2 13.8 137 91-243 4-157 (618)
72 PRK06134 putative FAD-binding 99.4 1.6E-11 3.4E-16 126.4 16.4 44 90-134 11-54 (581)
73 PRK07608 ubiquinone biosynthes 99.4 2E-11 4.3E-16 119.3 16.3 134 91-243 5-167 (388)
74 PRK06184 hypothetical protein; 99.4 1.4E-11 3.1E-16 124.7 15.8 133 91-244 3-169 (502)
75 PRK08244 hypothetical protein; 99.4 2.1E-11 4.6E-16 123.2 16.7 132 91-243 2-159 (493)
76 PRK08849 2-octaprenyl-3-methyl 99.4 2.1E-11 4.6E-16 119.3 16.2 135 91-244 3-168 (384)
77 PRK05714 2-octaprenyl-3-methyl 99.3 2.4E-11 5.2E-16 119.6 16.5 137 91-244 2-169 (405)
78 PRK12839 hypothetical protein; 99.3 2E-11 4.3E-16 125.2 16.1 43 90-133 7-49 (572)
79 PRK07190 hypothetical protein; 99.3 1.6E-11 3.4E-16 123.8 15.1 129 91-243 5-165 (487)
80 PRK07494 2-octaprenyl-6-methox 99.3 2.7E-11 5.9E-16 118.4 16.4 131 89-244 5-168 (388)
81 PRK06126 hypothetical protein; 99.3 2E-11 4.4E-16 124.8 15.9 139 88-244 4-189 (545)
82 PRK06617 2-octaprenyl-6-methox 99.3 3.3E-11 7.2E-16 117.5 16.3 133 92-244 2-161 (374)
83 PRK08020 ubiF 2-octaprenyl-3-m 99.3 4E-11 8.6E-16 117.4 16.8 135 91-244 5-170 (391)
84 PRK12843 putative FAD-binding 99.3 2.6E-11 5.6E-16 124.8 16.1 141 91-244 16-283 (578)
85 PRK06834 hypothetical protein; 99.3 2.7E-11 5.7E-16 122.2 15.5 131 91-244 3-157 (488)
86 TIGR01421 gluta_reduc_1 glutat 99.3 3.8E-12 8.2E-17 127.2 8.8 130 91-243 2-141 (450)
87 KOG2415 Electron transfer flav 99.3 1.1E-11 2.4E-16 117.6 11.3 153 90-246 75-259 (621)
88 PTZ00058 glutathione reductase 99.3 9.2E-12 2E-16 127.0 11.6 102 90-193 47-156 (561)
89 PLN02985 squalene monooxygenas 99.3 4.9E-11 1.1E-15 120.8 16.8 138 88-244 40-209 (514)
90 COG1053 SdhA Succinate dehydro 99.3 6.8E-12 1.5E-16 127.5 10.5 144 90-243 5-202 (562)
91 PRK07843 3-ketosteroid-delta-1 99.3 4.1E-11 8.9E-16 122.7 16.3 44 90-134 6-49 (557)
92 TIGR03862 flavo_PP4765 unchara 99.3 7.1E-11 1.5E-15 114.4 17.0 181 115-323 1-222 (376)
93 PRK08850 2-octaprenyl-6-methox 99.3 5.3E-11 1.1E-15 117.2 16.5 134 91-244 4-169 (405)
94 PRK06183 mhpA 3-(3-hydroxyphen 99.3 3.4E-11 7.4E-16 123.0 15.5 136 90-244 9-175 (538)
95 TIGR01988 Ubi-OHases Ubiquinon 99.3 5.4E-11 1.2E-15 115.8 16.2 134 93-244 1-164 (385)
96 TIGR01984 UbiH 2-polyprenyl-6- 99.3 5.9E-11 1.3E-15 115.7 15.9 132 93-243 1-162 (382)
97 TIGR01989 COQ6 Ubiquinone bios 99.3 6.2E-11 1.3E-15 118.0 16.2 137 92-244 1-184 (437)
98 PRK07333 2-octaprenyl-6-methox 99.3 6.9E-11 1.5E-15 116.1 16.1 131 92-243 2-167 (403)
99 TIGR02485 CobZ_N-term precorri 99.3 4.2E-11 9.2E-16 119.0 14.7 134 96-244 1-184 (432)
100 PRK11728 hydroxyglutarate oxid 99.3 8.6E-11 1.9E-15 115.3 16.6 135 92-243 3-204 (393)
101 PRK08243 4-hydroxybenzoate 3-m 99.3 6.8E-11 1.5E-15 116.0 15.6 135 91-244 2-164 (392)
102 TIGR03329 Phn_aa_oxid putative 99.3 7.1E-11 1.5E-15 118.3 16.0 47 89-135 22-69 (460)
103 PLN02507 glutathione reductase 99.3 8.9E-12 1.9E-16 126.0 9.4 138 89-243 23-179 (499)
104 PRK08132 FAD-dependent oxidore 99.3 1.2E-10 2.6E-15 119.1 17.3 135 90-244 22-186 (547)
105 PF01134 GIDA: Glucose inhibit 99.3 1E-10 2.2E-15 113.1 15.5 133 93-241 1-150 (392)
106 PRK08163 salicylate hydroxylas 99.3 8.5E-11 1.8E-15 115.2 15.3 131 91-244 4-167 (396)
107 TIGR03364 HpnW_proposed FAD de 99.3 9.7E-11 2.1E-15 113.6 15.5 42 92-134 1-42 (365)
108 PRK06370 mercuric reductase; V 99.3 5.5E-11 1.2E-15 119.3 13.9 130 90-243 4-145 (463)
109 PRK05249 soluble pyridine nucl 99.3 8.1E-11 1.8E-15 117.9 15.1 52 90-142 4-55 (461)
110 KOG1298 Squalene monooxygenase 99.3 3.1E-11 6.8E-16 113.7 10.4 136 89-243 43-208 (509)
111 PRK07236 hypothetical protein; 99.3 1.1E-10 2.5E-15 114.2 15.0 131 89-244 4-155 (386)
112 PRK06115 dihydrolipoamide dehy 99.2 4.6E-11 9.9E-16 119.9 11.7 136 91-243 3-148 (466)
113 KOG1335 Dihydrolipoamide dehyd 99.2 1.6E-11 3.4E-16 115.6 7.6 133 90-241 38-183 (506)
114 TIGR02023 BchP-ChlP geranylger 99.2 1.7E-10 3.7E-15 113.1 15.4 140 92-244 1-156 (388)
115 PRK12409 D-amino acid dehydrog 99.2 3.1E-10 6.7E-15 111.9 17.2 41 92-133 2-43 (410)
116 TIGR01377 soxA_mon sarcosine o 99.2 3.3E-10 7.1E-15 110.3 16.8 134 92-243 1-200 (380)
117 PRK00711 D-amino acid dehydrog 99.2 1.9E-10 4.2E-15 113.4 15.4 58 170-243 200-257 (416)
118 PRK05732 2-octaprenyl-6-methox 99.2 3.3E-10 7.2E-15 110.8 16.6 136 91-243 3-169 (395)
119 PRK06467 dihydrolipoamide dehy 99.2 4.8E-11 1E-15 119.9 10.6 136 91-243 4-148 (471)
120 PRK12266 glpD glycerol-3-phosp 99.2 1.2E-10 2.5E-15 118.2 13.3 41 90-131 5-45 (508)
121 PRK11259 solA N-methyltryptoph 99.2 3.9E-10 8.4E-15 109.6 16.3 135 91-243 3-204 (376)
122 PRK06847 hypothetical protein; 99.2 2.9E-10 6.2E-15 110.6 15.2 130 91-244 4-164 (375)
123 PRK13369 glycerol-3-phosphate 99.2 3.1E-10 6.8E-15 114.9 15.9 44 89-133 4-47 (502)
124 TIGR01424 gluta_reduc_2 glutat 99.2 4.8E-11 1E-15 119.1 9.8 131 91-243 2-142 (446)
125 PLN02546 glutathione reductase 99.2 2.2E-11 4.9E-16 124.2 7.4 132 89-243 77-228 (558)
126 PRK05976 dihydrolipoamide dehy 99.2 6.6E-11 1.4E-15 119.0 10.5 137 91-243 4-154 (472)
127 PRK07588 hypothetical protein; 99.2 3.7E-10 7.9E-15 110.7 15.5 128 93-245 2-160 (391)
128 PRK11445 putative oxidoreducta 99.2 5.1E-10 1.1E-14 108.3 15.8 132 92-244 2-158 (351)
129 TIGR01373 soxB sarcosine oxida 99.2 5.3E-10 1.2E-14 110.1 16.3 137 90-243 29-240 (407)
130 PRK06416 dihydrolipoamide dehy 99.2 1.1E-10 2.4E-15 117.0 11.5 134 91-243 4-146 (462)
131 PRK06475 salicylate hydroxylas 99.2 4.2E-10 9.1E-15 110.7 15.3 133 92-244 3-168 (400)
132 COG0492 TrxB Thioredoxin reduc 99.2 2.2E-10 4.8E-15 108.2 12.7 112 91-243 3-115 (305)
133 PLN02697 lycopene epsilon cycl 99.2 1.7E-10 3.8E-15 116.7 12.7 132 90-243 107-248 (529)
134 PRK14694 putative mercuric red 99.2 1.4E-10 3E-15 116.5 11.6 139 87-243 2-152 (468)
135 PRK07538 hypothetical protein; 99.2 5.3E-10 1.1E-14 110.5 15.4 134 93-244 2-166 (413)
136 PRK06996 hypothetical protein; 99.2 6.8E-10 1.5E-14 109.2 16.1 134 90-242 10-173 (398)
137 PLN02172 flavin-containing mon 99.2 3.3E-10 7.1E-15 113.3 14.0 140 91-243 10-173 (461)
138 PLN00093 geranylgeranyl diphos 99.2 9.7E-10 2.1E-14 109.7 17.4 144 91-244 39-200 (450)
139 TIGR02053 MerA mercuric reduct 99.2 2E-10 4.4E-15 115.2 12.1 131 92-243 1-140 (463)
140 TIGR02028 ChlP geranylgeranyl 99.2 6.3E-10 1.4E-14 109.5 15.3 143 92-244 1-161 (398)
141 PTZ00367 squalene epoxidase; P 99.2 7.5E-10 1.6E-14 113.2 16.2 150 87-244 29-220 (567)
142 PRK06116 glutathione reductase 99.2 1.2E-10 2.5E-15 116.5 9.9 129 91-243 4-143 (450)
143 PF13738 Pyr_redox_3: Pyridine 99.2 2.3E-11 5E-16 107.9 4.2 130 95-244 1-139 (203)
144 COG0578 GlpA Glycerol-3-phosph 99.2 3.7E-10 8.1E-15 112.7 13.1 142 90-243 11-225 (532)
145 PLN02463 lycopene beta cyclase 99.2 9.3E-10 2E-14 109.6 15.8 123 91-244 28-170 (447)
146 TIGR01292 TRX_reduct thioredox 99.1 5.1E-10 1.1E-14 105.0 13.1 112 92-243 1-112 (300)
147 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 9.4E-10 2E-14 107.9 15.3 135 91-244 2-164 (390)
148 PRK05868 hypothetical protein; 99.1 9.7E-10 2.1E-14 107.2 15.3 128 92-244 2-161 (372)
149 PRK01747 mnmC bifunctional tRN 99.1 9.4E-10 2E-14 115.1 16.2 136 91-244 260-464 (662)
150 PRK07251 pyridine nucleotide-d 99.1 7.4E-10 1.6E-14 110.3 13.9 123 91-243 3-130 (438)
151 PRK08294 phenol 2-monooxygenas 99.1 1.9E-09 4.1E-14 112.0 17.1 137 91-243 32-210 (634)
152 COG2072 TrkA Predicted flavopr 99.1 6.8E-10 1.5E-14 110.6 13.2 136 90-244 7-145 (443)
153 PLN02464 glycerol-3-phosphate 99.1 1.1E-09 2.4E-14 113.6 15.2 65 169-243 230-296 (627)
154 PRK13748 putative mercuric red 99.1 4.3E-10 9.3E-15 115.4 12.1 65 79-145 82-150 (561)
155 TIGR01423 trypano_reduc trypan 99.1 7.7E-10 1.7E-14 111.4 13.3 141 91-243 3-163 (486)
156 KOG0405 Pyridine nucleotide-di 99.1 8.6E-10 1.9E-14 102.9 12.1 138 89-243 18-165 (478)
157 PRK06753 hypothetical protein; 99.1 1.1E-09 2.5E-14 106.4 13.2 126 93-244 2-153 (373)
158 PRK06327 dihydrolipoamide dehy 99.1 3.4E-10 7.4E-15 113.9 9.8 138 91-243 4-157 (475)
159 TIGR01320 mal_quin_oxido malat 99.1 3.2E-09 7E-14 106.8 16.6 64 169-243 176-240 (483)
160 TIGR01790 carotene-cycl lycope 99.1 2.6E-09 5.7E-14 104.4 15.6 132 93-243 1-141 (388)
161 PRK08010 pyridine nucleotide-d 99.1 1.4E-09 3E-14 108.4 13.7 124 91-243 3-131 (441)
162 TIGR00136 gidA glucose-inhibit 99.1 2.2E-09 4.7E-14 109.2 14.9 136 92-243 1-154 (617)
163 PRK07818 dihydrolipoamide dehy 99.1 7.7E-10 1.7E-14 111.1 11.3 52 91-144 4-55 (466)
164 PTZ00383 malate:quinone oxidor 99.1 3.3E-09 7.1E-14 106.8 15.6 59 169-243 209-273 (497)
165 TIGR01350 lipoamide_DH dihydro 99.1 7.1E-10 1.5E-14 111.1 10.8 133 92-243 2-143 (461)
166 TIGR01438 TGR thioredoxin and 99.0 1.5E-09 3.3E-14 109.4 12.4 136 91-243 2-155 (484)
167 PRK06292 dihydrolipoamide dehy 99.0 1.3E-09 2.8E-14 109.2 11.5 52 91-144 3-54 (460)
168 PRK14727 putative mercuric red 99.0 3E-09 6.5E-14 107.2 13.5 55 90-145 15-69 (479)
169 PRK15317 alkyl hydroperoxide r 99.0 4.6E-09 1E-13 106.8 14.3 114 89-243 209-322 (517)
170 PRK05257 malate:quinone oxidor 99.0 1.2E-08 2.7E-13 102.9 16.4 38 91-128 5-43 (494)
171 PF00732 GMC_oxred_N: GMC oxid 99.0 3.3E-09 7.1E-14 99.9 11.5 61 175-243 196-258 (296)
172 KOG2404 Fumarate reductase, fl 99.0 3.1E-09 6.8E-14 98.3 10.8 140 93-243 11-206 (477)
173 PTZ00052 thioredoxin reductase 99.0 1.7E-09 3.7E-14 109.4 10.1 53 91-144 5-65 (499)
174 PF05834 Lycopene_cycl: Lycope 99.0 3.8E-09 8.3E-14 103.1 12.2 130 93-244 1-143 (374)
175 COG0445 GidA Flavin-dependent 99.0 1.9E-09 4E-14 106.3 9.5 136 91-242 4-157 (621)
176 PRK06912 acoL dihydrolipoamide 99.0 5.9E-09 1.3E-13 104.5 13.1 132 93-243 2-144 (458)
177 TIGR03140 AhpF alkyl hydropero 99.0 1.2E-08 2.6E-13 103.7 15.4 114 89-243 210-323 (515)
178 TIGR02730 carot_isom carotene 99.0 1.3E-08 2.9E-13 102.8 15.2 39 92-131 1-39 (493)
179 PTZ00153 lipoamide dehydrogena 98.9 2.7E-09 5.8E-14 110.6 9.9 55 90-145 115-170 (659)
180 COG0665 DadA Glycine/D-amino a 98.9 7.6E-09 1.7E-13 100.8 12.6 40 91-131 4-43 (387)
181 TIGR03143 AhpF_homolog putativ 98.9 8.9E-09 1.9E-13 105.6 13.4 111 91-243 4-114 (555)
182 PRK10262 thioredoxin reductase 98.9 1.2E-08 2.7E-13 97.3 13.3 115 88-243 3-117 (321)
183 TIGR03219 salicylate_mono sali 98.9 1.6E-08 3.4E-13 100.0 14.3 125 93-243 2-159 (414)
184 PRK13339 malate:quinone oxidor 98.9 2E-08 4.4E-13 100.9 15.0 39 90-128 5-44 (497)
185 PRK07846 mycothione reductase; 98.9 5.2E-09 1.1E-13 104.7 10.5 128 92-243 2-140 (451)
186 PRK07845 flavoprotein disulfid 98.9 8.8E-09 1.9E-13 103.4 12.2 135 92-243 2-151 (466)
187 PF04820 Trp_halogenase: Trypt 98.9 1.2E-08 2.6E-13 102.0 13.1 67 164-246 147-214 (454)
188 PRK13977 myosin-cross-reactive 98.9 2.5E-08 5.3E-13 100.8 15.1 41 91-131 22-65 (576)
189 PLN02927 antheraxanthin epoxid 98.9 3.4E-08 7.5E-13 102.1 16.2 130 90-244 80-249 (668)
190 COG1233 Phytoene dehydrogenase 98.9 2.2E-08 4.9E-13 101.0 14.2 40 91-131 3-42 (487)
191 TIGR02734 crtI_fam phytoene de 98.9 4.3E-08 9.2E-13 99.4 15.5 37 94-131 1-37 (502)
192 COG3573 Predicted oxidoreducta 98.9 4.1E-08 8.9E-13 91.4 13.8 152 90-243 4-228 (552)
193 PRK09897 hypothetical protein; 98.9 4.3E-08 9.4E-13 99.4 15.2 138 92-244 2-167 (534)
194 TIGR01372 soxA sarcosine oxida 98.9 3.3E-08 7.2E-13 107.6 14.9 125 90-243 162-286 (985)
195 COG2509 Uncharacterized FAD-de 98.9 4.6E-08 1E-12 94.7 14.1 87 171-275 173-261 (486)
196 PRK07233 hypothetical protein; 98.8 5.2E-08 1.1E-12 96.3 14.5 38 93-131 1-38 (434)
197 KOG1399 Flavin-containing mono 98.8 2.8E-08 6.1E-13 98.4 12.3 137 91-243 6-153 (448)
198 TIGR03452 mycothione_red mycot 98.8 8.2E-09 1.8E-13 103.3 8.3 129 91-243 2-143 (452)
199 PRK05675 sdhA succinate dehydr 98.8 3.5E-08 7.5E-13 101.5 13.0 130 104-244 1-190 (570)
200 KOG2844 Dimethylglycine dehydr 98.8 8.9E-08 1.9E-12 96.1 14.4 135 92-243 40-243 (856)
201 PRK05329 anaerobic glycerol-3- 98.8 1.3E-07 2.7E-12 93.5 15.4 34 91-125 2-35 (422)
202 PF13454 NAD_binding_9: FAD-NA 98.8 8.5E-08 1.8E-12 82.0 11.9 131 95-241 1-155 (156)
203 KOG2852 Possible oxidoreductas 98.8 2.2E-08 4.8E-13 91.4 8.4 141 92-243 11-208 (380)
204 KOG0042 Glycerol-3-phosphate d 98.8 1.1E-08 2.4E-13 100.3 6.5 45 87-132 63-107 (680)
205 KOG2614 Kynurenine 3-monooxyge 98.7 2.7E-08 5.8E-13 95.4 8.2 38 92-130 3-40 (420)
206 PRK02106 choline dehydrogenase 98.7 1.4E-07 3.1E-12 96.9 14.1 57 178-244 207-263 (560)
207 TIGR02733 desat_CrtD C-3',4' d 98.7 3.7E-07 8.1E-12 92.3 16.5 39 92-131 2-40 (492)
208 PF07992 Pyr_redox_2: Pyridine 98.7 2.2E-08 4.8E-13 88.4 6.1 113 93-242 1-121 (201)
209 PF00070 Pyr_redox: Pyridine n 98.7 1.4E-07 3.1E-12 71.1 9.5 77 94-211 2-78 (80)
210 TIGR01789 lycopene_cycl lycope 98.7 2.8E-07 6.1E-12 89.8 13.9 124 93-243 1-138 (370)
211 PF00743 FMO-like: Flavin-bind 98.7 3.9E-08 8.4E-13 100.0 7.8 139 93-244 3-151 (531)
212 KOG2665 Predicted FAD-dependen 98.7 1.8E-07 3.9E-12 86.6 11.2 141 89-243 46-257 (453)
213 COG1231 Monoamine oxidase [Ami 98.7 2.5E-07 5.4E-12 89.9 12.8 42 90-132 6-47 (450)
214 PTZ00363 rab-GDP dissociation 98.7 6.1E-07 1.3E-11 89.3 15.8 41 91-132 4-44 (443)
215 KOG2853 Possible oxidoreductas 98.7 3.5E-07 7.6E-12 85.5 12.9 37 90-126 85-124 (509)
216 PF06039 Mqo: Malate:quinone o 98.7 3.8E-07 8.2E-12 89.1 13.7 63 171-243 181-244 (488)
217 TIGR01810 betA choline dehydro 98.7 3.8E-07 8.3E-12 93.2 14.2 59 176-244 198-256 (532)
218 KOG4716 Thioredoxin reductase 98.6 2.1E-07 4.6E-12 86.8 10.8 72 88-160 16-99 (503)
219 KOG2820 FAD-dependent oxidored 98.6 6.4E-07 1.4E-11 83.7 13.5 36 91-127 7-42 (399)
220 PRK12779 putative bifunctional 98.6 1.1E-07 2.5E-12 102.5 9.7 98 91-242 306-403 (944)
221 TIGR01816 sdhA_forward succina 98.6 3.8E-07 8.3E-12 93.8 13.1 123 110-243 1-181 (565)
222 KOG2311 NAD/FAD-utilizing prot 98.6 1.2E-07 2.6E-12 92.0 8.5 136 91-242 28-185 (679)
223 PRK09853 putative selenate red 98.6 2.1E-07 4.6E-12 99.7 10.8 39 91-130 539-577 (1019)
224 PF13450 NAD_binding_8: NAD(P) 98.6 1.2E-07 2.5E-12 69.4 6.1 36 96-132 1-36 (68)
225 TIGR03378 glycerol3P_GlpB glyc 98.6 1.2E-06 2.6E-11 85.9 13.9 59 172-243 264-323 (419)
226 PRK08255 salicylyl-CoA 5-hydro 98.6 2.6E-07 5.6E-12 98.2 10.0 124 93-244 2-142 (765)
227 TIGR03315 Se_ygfK putative sel 98.5 2.5E-07 5.4E-12 99.5 8.9 39 91-130 537-575 (1012)
228 COG3380 Predicted NAD/FAD-depe 98.5 6.9E-07 1.5E-11 81.3 9.9 130 92-240 2-157 (331)
229 PRK12831 putative oxidoreducta 98.5 1.8E-07 3.9E-12 93.9 6.8 41 90-131 139-179 (464)
230 PLN02612 phytoene desaturase 98.5 3E-06 6.5E-11 87.2 15.8 41 90-131 92-132 (567)
231 COG1252 Ndh NADH dehydrogenase 98.5 1.6E-06 3.4E-11 84.6 12.6 204 92-349 4-242 (405)
232 PRK13512 coenzyme A disulfide 98.5 6.4E-07 1.4E-11 89.3 9.9 114 93-243 3-117 (438)
233 COG1148 HdrA Heterodisulfide r 98.5 2.2E-07 4.8E-12 90.4 6.2 83 90-199 123-205 (622)
234 PRK09564 coenzyme A disulfide 98.5 6.9E-07 1.5E-11 89.1 10.1 111 93-243 2-115 (444)
235 COG1232 HemY Protoporphyrinoge 98.4 1.8E-06 4E-11 85.3 11.8 38 93-131 2-41 (444)
236 PRK04965 NADH:flavorubredoxin 98.4 5.7E-06 1.2E-10 80.8 14.9 136 92-297 142-277 (377)
237 TIGR00137 gid_trmFO tRNA:m(5)U 98.4 2.4E-06 5.3E-11 84.1 12.2 36 92-128 1-36 (433)
238 PRK11749 dihydropyrimidine deh 98.4 5.2E-07 1.1E-11 90.4 7.7 38 91-129 140-177 (457)
239 PLN02785 Protein HOTHEAD 98.4 1.2E-06 2.7E-11 90.2 10.4 33 91-125 55-87 (587)
240 PRK12775 putative trifunctiona 98.4 4.1E-07 8.9E-12 99.0 7.2 74 91-195 430-503 (1006)
241 COG3634 AhpF Alkyl hydroperoxi 98.4 8.9E-07 1.9E-11 83.0 8.2 112 90-241 210-323 (520)
242 PRK12778 putative bifunctional 98.4 5.2E-07 1.1E-11 95.9 7.6 40 90-130 430-469 (752)
243 PRK09754 phenylpropionate diox 98.4 7.8E-07 1.7E-11 87.5 8.3 107 92-243 4-112 (396)
244 PF13434 K_oxygenase: L-lysine 98.4 7.6E-07 1.6E-11 85.8 7.7 136 92-241 3-157 (341)
245 TIGR01316 gltA glutamate synth 98.4 5E-07 1.1E-11 90.4 6.6 40 90-130 132-171 (449)
246 PRK04965 NADH:flavorubredoxin 98.4 2E-06 4.2E-11 84.1 10.4 108 92-243 3-111 (377)
247 PRK14989 nitrite reductase sub 98.4 8.4E-06 1.8E-10 87.3 15.5 139 92-297 146-285 (847)
248 PRK12769 putative oxidoreducta 98.4 8.9E-07 1.9E-11 92.7 7.9 38 91-129 327-364 (654)
249 COG3075 GlpB Anaerobic glycero 98.4 6.7E-06 1.5E-10 76.8 12.6 56 175-243 262-317 (421)
250 KOG1238 Glucose dehydrogenase/ 98.4 3.5E-06 7.7E-11 85.2 11.7 38 90-127 56-93 (623)
251 PRK12810 gltD glutamate syntha 98.3 8.8E-07 1.9E-11 89.2 7.3 38 91-129 143-180 (471)
252 PRK09564 coenzyme A disulfide 98.3 8.9E-06 1.9E-10 81.1 14.3 139 92-299 150-288 (444)
253 TIGR02374 nitri_red_nirB nitri 98.3 7.9E-06 1.7E-10 87.2 14.7 136 92-297 141-276 (785)
254 TIGR01318 gltD_gamma_fam gluta 98.3 1.2E-06 2.6E-11 88.1 7.6 38 91-129 141-178 (467)
255 PRK12770 putative glutamate sy 98.3 1.5E-06 3.3E-11 84.1 7.8 38 91-129 18-55 (352)
256 PLN02268 probable polyamine ox 98.3 1.4E-06 3.1E-11 86.5 7.2 64 93-157 2-75 (435)
257 PLN02852 ferredoxin-NADP+ redu 98.3 2.4E-06 5.3E-11 85.8 8.5 37 92-129 27-65 (491)
258 KOG3855 Monooxygenase involved 98.3 1.3E-05 2.9E-10 76.9 12.7 139 91-243 36-217 (481)
259 KOG4254 Phytoene desaturase [C 98.3 3.3E-06 7.1E-11 81.8 8.5 42 89-131 12-53 (561)
260 TIGR02462 pyranose_ox pyranose 98.3 1.4E-06 3.1E-11 88.4 6.3 59 92-152 1-59 (544)
261 COG2303 BetA Choline dehydroge 98.2 5.5E-06 1.2E-10 84.7 10.3 61 176-244 207-267 (542)
262 TIGR01350 lipoamide_DH dihydro 98.2 1.6E-05 3.5E-10 79.7 13.3 100 92-244 171-270 (461)
263 PRK05976 dihydrolipoamide dehy 98.2 1.5E-05 3.4E-10 80.2 13.0 100 92-243 181-281 (472)
264 COG1252 Ndh NADH dehydrogenase 98.2 1.1E-05 2.3E-10 78.9 11.3 199 57-328 117-333 (405)
265 PRK09754 phenylpropionate diox 98.2 1.1E-05 2.4E-10 79.3 11.6 135 92-297 145-279 (396)
266 PRK07208 hypothetical protein; 98.2 1.5E-06 3.3E-11 87.4 5.4 40 91-131 4-43 (479)
267 PRK12814 putative NADPH-depend 98.2 2.1E-06 4.6E-11 89.7 6.6 39 91-130 193-231 (652)
268 TIGR01317 GOGAT_sm_gam glutama 98.2 3.7E-06 8E-11 85.0 8.1 38 91-129 143-180 (485)
269 TIGR03385 CoA_CoA_reduc CoA-di 98.2 2.4E-05 5.1E-10 77.7 13.7 137 92-298 138-274 (427)
270 PRK12809 putative oxidoreducta 98.2 3E-06 6.5E-11 88.5 7.6 38 91-129 310-347 (639)
271 PRK07251 pyridine nucleotide-d 98.2 1.6E-05 3.5E-10 79.2 12.5 97 92-244 158-254 (438)
272 PTZ00318 NADH dehydrogenase-li 98.2 1.8E-05 3.9E-10 78.6 12.7 116 91-243 10-125 (424)
273 KOG0029 Amine oxidase [Seconda 98.2 1.8E-06 3.9E-11 87.0 5.2 41 90-131 14-54 (501)
274 TIGR02053 MerA mercuric reduct 98.2 2E-05 4.2E-10 79.2 12.4 100 92-243 167-266 (463)
275 PRK06416 dihydrolipoamide dehy 98.2 2.8E-05 6E-10 78.1 13.5 100 92-243 173-272 (462)
276 PRK06567 putative bifunctional 98.2 5.3E-06 1.1E-10 88.4 8.4 38 91-129 383-420 (1028)
277 PRK07818 dihydrolipoamide dehy 98.2 3E-05 6.5E-10 77.9 13.6 101 92-243 173-273 (466)
278 PRK06912 acoL dihydrolipoamide 98.2 2.6E-05 5.7E-10 78.2 13.1 98 92-243 171-268 (458)
279 PRK05249 soluble pyridine nucl 98.2 2.8E-05 6E-10 78.0 13.1 97 92-243 176-272 (461)
280 TIGR03140 AhpF alkyl hydropero 98.1 2.2E-05 4.8E-10 79.9 12.5 98 92-243 353-450 (515)
281 PRK06116 glutathione reductase 98.1 3E-05 6.4E-10 77.6 13.2 98 92-243 168-265 (450)
282 PRK05335 tRNA (uracil-5-)-meth 98.1 1.3E-05 2.8E-10 78.8 10.2 104 92-198 3-125 (436)
283 PRK06370 mercuric reductase; V 98.1 3.9E-05 8.5E-10 77.0 13.8 100 92-243 172-271 (463)
284 TIGR02352 thiamin_ThiO glycine 98.1 2.3E-05 5E-10 74.7 11.7 60 169-244 135-194 (337)
285 COG0446 HcaD Uncharacterized N 98.1 1.6E-05 3.5E-10 77.6 10.6 99 92-243 137-237 (415)
286 KOG0404 Thioredoxin reductase 98.1 1.8E-05 3.8E-10 70.3 9.3 116 92-243 9-124 (322)
287 TIGR01421 gluta_reduc_1 glutat 98.1 3.6E-05 7.7E-10 77.1 12.9 100 92-244 167-266 (450)
288 TIGR00031 UDP-GALP_mutase UDP- 98.1 3.4E-06 7.3E-11 82.2 5.1 40 92-132 2-41 (377)
289 COG1249 Lpd Pyruvate/2-oxoglut 98.1 3.7E-05 8.1E-10 76.6 12.5 99 92-243 174-272 (454)
290 COG0562 Glf UDP-galactopyranos 98.1 4E-06 8.7E-11 78.1 5.2 41 92-133 2-42 (374)
291 TIGR02731 phytoene_desat phyto 98.1 6.7E-06 1.4E-10 82.3 7.2 63 93-156 1-72 (453)
292 PRK06115 dihydrolipoamide dehy 98.1 5.5E-05 1.2E-09 76.1 13.6 102 92-243 175-276 (466)
293 PRK12771 putative glutamate sy 98.1 6.9E-06 1.5E-10 84.6 7.2 38 91-129 137-174 (564)
294 PRK15317 alkyl hydroperoxide r 98.1 3.5E-05 7.7E-10 78.5 12.2 163 92-329 352-514 (517)
295 PLN02507 glutathione reductase 98.1 4.4E-05 9.5E-10 77.5 12.7 98 92-244 204-301 (499)
296 COG2907 Predicted NAD/FAD-bind 98.1 5E-05 1.1E-09 71.6 11.9 39 91-131 8-46 (447)
297 PTZ00188 adrenodoxin reductase 98.1 1.1E-05 2.3E-10 80.6 7.9 37 92-129 40-77 (506)
298 TIGR03169 Nterm_to_SelD pyridi 98.1 1.6E-05 3.4E-10 77.2 9.0 105 93-243 1-107 (364)
299 PRK13984 putative oxidoreducta 98.1 9E-06 1.9E-10 84.4 7.7 39 90-129 282-320 (604)
300 PRK13512 coenzyme A disulfide 98.1 7.1E-05 1.5E-09 74.7 13.8 134 92-298 149-282 (438)
301 PRK06327 dihydrolipoamide dehy 98.0 7E-05 1.5E-09 75.5 13.7 102 92-244 184-285 (475)
302 PRK11883 protoporphyrinogen ox 98.0 4.5E-06 9.8E-11 83.1 4.7 38 93-131 2-41 (451)
303 PRK07845 flavoprotein disulfid 98.0 5.9E-05 1.3E-09 75.9 12.7 98 92-244 178-275 (466)
304 KOG1335 Dihydrolipoamide dehyd 98.0 4.1E-05 8.9E-10 72.9 10.6 104 92-244 212-315 (506)
305 PRK12416 protoporphyrinogen ox 98.0 9.5E-06 2E-10 81.4 6.7 65 93-157 3-80 (463)
306 PRK08010 pyridine nucleotide-d 98.0 7.4E-05 1.6E-09 74.5 12.9 97 92-244 159-255 (441)
307 TIGR01292 TRX_reduct thioredox 98.0 7.1E-05 1.5E-09 70.0 12.0 97 92-243 142-238 (300)
308 TIGR01424 gluta_reduc_2 glutat 98.0 7.7E-05 1.7E-09 74.6 12.9 97 92-243 167-263 (446)
309 PLN02576 protoporphyrinogen ox 98.0 7E-06 1.5E-10 83.0 5.3 42 90-131 11-52 (496)
310 COG4529 Uncharacterized protei 98.0 9.9E-05 2.1E-09 72.7 12.9 138 92-244 2-165 (474)
311 PRK10262 thioredoxin reductase 98.0 6.3E-05 1.4E-09 71.7 11.5 169 92-328 147-316 (321)
312 PRK14989 nitrite reductase sub 98.0 2.5E-05 5.5E-10 83.7 9.6 107 92-243 4-113 (847)
313 PRK14727 putative mercuric red 98.0 8.7E-05 1.9E-09 74.9 13.0 96 92-244 189-284 (479)
314 PRK07846 mycothione reductase; 98.0 6.4E-05 1.4E-09 75.3 11.9 96 92-243 167-262 (451)
315 PLN02568 polyamine oxidase 98.0 1.7E-05 3.6E-10 81.1 7.6 40 91-131 5-49 (539)
316 TIGR03377 glycerol3P_GlpA glyc 98.0 0.0001 2.2E-09 75.1 13.3 66 168-243 125-190 (516)
317 PRK14694 putative mercuric red 98.0 0.0001 2.2E-09 74.2 13.1 96 92-244 179-274 (468)
318 TIGR00562 proto_IX_ox protopor 97.9 9E-06 1.9E-10 81.4 5.0 41 92-132 3-46 (462)
319 PRK06467 dihydrolipoamide dehy 97.9 0.00012 2.6E-09 73.7 13.1 100 92-243 175-274 (471)
320 TIGR02374 nitri_red_nirB nitri 97.9 2.6E-05 5.6E-10 83.3 8.6 106 94-243 1-108 (785)
321 TIGR01423 trypano_reduc trypan 97.9 0.0001 2.2E-09 74.5 12.5 99 92-244 188-289 (486)
322 PRK13748 putative mercuric red 97.9 9.7E-05 2.1E-09 76.0 12.2 96 92-244 271-366 (561)
323 PTZ00058 glutathione reductase 97.9 0.00012 2.5E-09 75.3 12.0 98 92-243 238-336 (561)
324 PLN02676 polyamine oxidase 97.9 1.6E-05 3.4E-10 80.4 5.3 44 87-131 22-66 (487)
325 TIGR01316 gltA glutamate synth 97.9 0.00016 3.4E-09 72.5 12.1 107 92-242 273-386 (449)
326 TIGR03452 mycothione_red mycot 97.8 0.00017 3.8E-09 72.2 12.3 96 92-243 170-265 (452)
327 COG3349 Uncharacterized conser 97.8 1.5E-05 3.3E-10 78.9 4.6 38 93-131 2-39 (485)
328 PRK06292 dihydrolipoamide dehy 97.8 0.00029 6.3E-09 70.6 13.2 98 92-243 170-268 (460)
329 PTZ00052 thioredoxin reductase 97.8 0.00019 4.1E-09 72.8 11.8 96 92-243 183-278 (499)
330 PLN02546 glutathione reductase 97.8 0.00023 5E-09 73.1 12.0 99 92-244 253-351 (558)
331 TIGR02732 zeta_caro_desat caro 97.8 5.5E-05 1.2E-09 76.3 7.2 38 93-131 1-38 (474)
332 TIGR01438 TGR thioredoxin and 97.8 0.0003 6.5E-09 71.1 12.5 99 92-243 181-279 (484)
333 COG0493 GltD NADPH-dependent g 97.8 3.4E-05 7.4E-10 76.9 5.4 37 92-129 124-160 (457)
334 PTZ00153 lipoamide dehydrogena 97.7 0.00032 6.9E-09 73.3 12.6 108 92-243 313-427 (659)
335 PTZ00318 NADH dehydrogenase-li 97.7 0.0002 4.3E-09 71.1 10.5 161 93-328 175-349 (424)
336 KOG1800 Ferredoxin/adrenodoxin 97.7 8.1E-05 1.8E-09 70.9 7.2 38 92-129 21-59 (468)
337 KOG1336 Monodehydroascorbate/f 97.7 0.00022 4.8E-09 69.9 10.1 100 91-243 213-313 (478)
338 TIGR03197 MnmC_Cterm tRNA U-34 97.7 0.00037 8E-09 68.1 11.9 59 169-244 133-191 (381)
339 PLN02328 lysine-specific histo 97.7 9.6E-05 2.1E-09 78.2 7.9 40 91-131 238-277 (808)
340 PRK12831 putative oxidoreducta 97.7 0.00041 8.9E-09 69.8 11.7 108 92-243 282-396 (464)
341 PLN02529 lysine-specific histo 97.6 6E-05 1.3E-09 79.2 5.4 41 90-131 159-199 (738)
342 PRK11749 dihydropyrimidine deh 97.6 0.0005 1.1E-08 69.0 11.5 109 91-243 273-387 (457)
343 PF06100 Strep_67kDa_ant: Stre 97.6 0.0021 4.5E-08 63.9 15.3 40 92-131 3-45 (500)
344 KOG0399 Glutamate synthase [Am 97.6 0.00018 3.9E-09 76.4 7.7 56 73-129 1765-1822(2142)
345 PRK12810 gltD glutamate syntha 97.6 0.00064 1.4E-08 68.5 11.3 183 92-328 282-466 (471)
346 PLN02487 zeta-carotene desatur 97.5 0.00018 3.9E-09 73.9 7.3 39 92-131 76-114 (569)
347 COG3486 IucD Lysine/ornithine 97.5 0.00089 1.9E-08 64.6 11.1 133 90-243 4-157 (436)
348 PF01593 Amino_oxidase: Flavin 97.5 0.0003 6.5E-09 68.5 8.2 31 101-132 1-31 (450)
349 COG1251 NirB NAD(P)H-nitrite r 97.5 0.00032 7E-09 72.1 8.3 130 51-243 113-243 (793)
350 PRK12770 putative glutamate sy 97.5 0.00062 1.3E-08 65.9 9.8 105 92-243 173-286 (352)
351 TIGR03143 AhpF_homolog putativ 97.5 0.0012 2.6E-08 68.0 11.9 97 92-243 144-246 (555)
352 KOG1336 Monodehydroascorbate/f 97.4 0.00031 6.7E-09 68.9 6.8 102 91-241 74-179 (478)
353 TIGR01372 soxA sarcosine oxida 97.4 0.0023 5E-08 70.2 13.9 156 92-329 318-474 (985)
354 KOG2403 Succinate dehydrogenas 97.4 0.00017 3.6E-09 71.7 4.2 33 92-125 56-88 (642)
355 PF00996 GDI: GDP dissociation 97.4 0.0027 5.8E-08 63.0 12.6 41 90-131 3-43 (438)
356 TIGR03169 Nterm_to_SelD pyridi 97.4 0.0038 8.3E-08 60.4 13.6 160 92-327 146-311 (364)
357 PLN03000 amine oxidase 97.3 0.00024 5.2E-09 75.5 5.4 42 90-132 183-224 (881)
358 PRK12769 putative oxidoreducta 97.3 0.0018 3.9E-08 68.0 11.8 108 92-243 469-584 (654)
359 PLN02976 amine oxidase 97.3 0.00023 4.9E-09 78.6 5.1 43 89-132 691-733 (1713)
360 KOG0685 Flavin-containing amin 97.3 0.00027 6E-09 69.3 5.2 41 91-131 21-61 (498)
361 TIGR01318 gltD_gamma_fam gluta 97.3 0.0027 5.8E-08 64.0 11.9 108 92-243 283-398 (467)
362 PRK12778 putative bifunctional 97.3 0.0022 4.7E-08 68.5 11.7 108 92-243 571-686 (752)
363 PRK09853 putative selenate red 97.2 0.0074 1.6E-07 65.5 14.2 175 92-331 669-846 (1019)
364 KOG1276 Protoporphyrinogen oxi 97.1 0.00048 1E-08 66.8 4.5 41 91-131 11-52 (491)
365 PRK12779 putative bifunctional 97.1 0.0057 1.2E-07 66.6 13.1 108 92-243 448-562 (944)
366 COG1206 Gid NAD(FAD)-utilizing 97.0 0.0026 5.6E-08 59.9 8.0 105 92-199 4-127 (439)
367 PF13434 K_oxygenase: L-lysine 97.0 0.0069 1.5E-07 58.4 11.4 129 91-240 190-338 (341)
368 KOG3923 D-aspartate oxidase [A 97.0 0.0035 7.6E-08 58.2 8.5 48 92-139 4-57 (342)
369 PRK13984 putative oxidoreducta 96.9 0.011 2.3E-07 61.6 12.4 109 92-243 419-538 (604)
370 PRK12814 putative NADPH-depend 96.9 0.013 2.9E-07 61.4 12.7 172 91-328 323-502 (652)
371 COG0492 TrxB Thioredoxin reduc 96.7 0.015 3.2E-07 55.2 10.9 96 91-243 143-238 (305)
372 TIGR03315 Se_ygfK putative sel 96.7 0.024 5.1E-07 61.9 13.7 170 91-327 666-840 (1012)
373 PRK12775 putative trifunctiona 96.7 0.013 2.9E-07 64.3 11.9 180 91-330 571-758 (1006)
374 PRK12809 putative oxidoreducta 96.7 0.017 3.6E-07 60.6 11.7 108 92-243 452-567 (639)
375 PLN02852 ferredoxin-NADP+ redu 96.6 0.089 1.9E-06 53.3 15.9 128 185-328 288-423 (491)
376 TIGR01317 GOGAT_sm_gam glutama 96.5 0.044 9.5E-07 55.5 13.0 123 92-242 284-413 (485)
377 COG3634 AhpF Alkyl hydroperoxi 96.4 0.016 3.5E-07 55.1 8.7 96 91-240 354-449 (520)
378 PRK01438 murD UDP-N-acetylmura 96.3 0.013 2.8E-07 59.2 7.7 33 92-125 17-49 (480)
379 PRK12771 putative glutamate sy 96.2 0.045 9.8E-07 56.5 11.3 173 91-329 267-446 (564)
380 KOG0404 Thioredoxin reductase 96.1 0.025 5.5E-07 50.6 7.5 98 92-243 158-255 (322)
381 KOG2495 NADH-dehydrogenase (ub 95.8 0.067 1.5E-06 52.3 9.6 97 92-243 219-329 (491)
382 KOG3851 Sulfide:quinone oxidor 95.7 0.0069 1.5E-07 56.8 2.7 36 90-125 38-74 (446)
383 KOG2755 Oxidoreductase [Genera 95.7 0.0099 2.1E-07 54.4 3.3 33 94-126 2-35 (334)
384 KOG1439 RAB proteins geranylge 95.5 0.13 2.8E-06 49.9 10.3 40 91-131 4-43 (440)
385 COG1251 NirB NAD(P)H-nitrite r 95.4 0.099 2.2E-06 54.4 9.7 108 92-243 4-113 (793)
386 PLN02172 flavin-containing mon 95.3 0.035 7.6E-07 55.8 6.3 34 91-125 204-237 (461)
387 KOG2495 NADH-dehydrogenase (ub 95.0 0.27 5.9E-06 48.2 10.9 115 91-243 55-170 (491)
388 COG0446 HcaD Uncharacterized N 94.7 0.075 1.6E-06 51.7 6.6 106 94-244 1-107 (415)
389 TIGR03385 CoA_CoA_reduc CoA-di 94.3 0.2 4.4E-06 49.6 8.8 49 181-243 53-103 (427)
390 COG3486 IucD Lysine/ornithine 94.2 0.75 1.6E-05 44.9 11.8 136 94-242 190-339 (436)
391 COG5044 MRS6 RAB proteins gera 94.1 0.084 1.8E-06 50.6 5.1 40 90-130 5-44 (434)
392 KOG1346 Programmed cell death 94.1 0.19 4.2E-06 49.0 7.5 98 92-243 348-449 (659)
393 PF02558 ApbA: Ketopantoate re 93.7 0.097 2.1E-06 43.8 4.4 31 94-125 1-31 (151)
394 PF02737 3HCDH_N: 3-hydroxyacy 93.6 0.082 1.8E-06 46.2 3.9 31 94-125 2-32 (180)
395 PF01210 NAD_Gly3P_dh_N: NAD-d 93.2 0.092 2E-06 44.7 3.6 31 94-125 2-32 (157)
396 PF13738 Pyr_redox_3: Pyridine 93.2 0.12 2.6E-06 45.3 4.4 34 91-125 167-200 (203)
397 COG4716 Myosin-crossreactive a 93.2 0.22 4.8E-06 48.0 6.3 40 92-131 23-65 (587)
398 PRK02705 murD UDP-N-acetylmura 92.8 0.12 2.5E-06 51.9 4.2 34 93-127 2-35 (459)
399 COG0569 TrkA K+ transport syst 92.8 0.13 2.8E-06 46.6 4.1 33 93-126 2-34 (225)
400 KOG4716 Thioredoxin reductase 92.7 0.18 3.9E-06 48.0 4.9 101 92-243 199-300 (503)
401 PF13241 NAD_binding_7: Putati 92.4 0.16 3.4E-06 40.0 3.6 33 91-124 7-39 (103)
402 PRK06567 putative bifunctional 92.1 1.1 2.4E-05 48.9 10.5 58 184-241 652-726 (1028)
403 PF00743 FMO-like: Flavin-bind 92.0 0.74 1.6E-05 47.2 8.8 34 91-125 183-216 (531)
404 PF03721 UDPG_MGDP_dh_N: UDP-g 91.9 0.16 3.4E-06 44.6 3.3 32 93-125 2-33 (185)
405 PRK14106 murD UDP-N-acetylmura 91.6 0.26 5.6E-06 49.2 5.0 33 92-125 6-38 (450)
406 TIGR01470 cysG_Nterm siroheme 91.6 0.25 5.5E-06 44.1 4.3 33 92-125 10-42 (205)
407 PRK06129 3-hydroxyacyl-CoA deh 91.5 0.21 4.6E-06 47.4 4.1 32 93-125 4-35 (308)
408 PF01262 AlaDh_PNT_C: Alanine 91.3 0.31 6.7E-06 41.9 4.5 33 92-125 21-53 (168)
409 PF02254 TrkA_N: TrkA-N domain 91.2 0.31 6.8E-06 38.7 4.1 31 94-125 1-31 (116)
410 PRK06249 2-dehydropantoate 2-r 91.2 0.35 7.5E-06 46.0 5.1 33 92-125 6-38 (313)
411 PF01488 Shikimate_DH: Shikima 91.1 0.34 7.5E-06 40.0 4.4 34 91-125 12-46 (135)
412 PRK05708 2-dehydropantoate 2-r 90.9 0.33 7.2E-06 46.0 4.7 33 92-125 3-35 (305)
413 PRK06719 precorrin-2 dehydroge 90.9 0.35 7.6E-06 41.2 4.3 32 91-123 13-44 (157)
414 TIGR02354 thiF_fam2 thiamine b 90.8 0.34 7.3E-06 43.1 4.4 34 91-125 21-55 (200)
415 KOG0405 Pyridine nucleotide-di 90.6 0.94 2E-05 43.4 7.2 98 92-243 190-287 (478)
416 TIGR00518 alaDH alanine dehydr 90.4 0.36 7.7E-06 47.2 4.5 34 91-125 167-200 (370)
417 COG0686 Ald Alanine dehydrogen 90.3 0.27 5.8E-06 46.3 3.3 34 91-125 168-201 (371)
418 PRK06718 precorrin-2 dehydroge 90.3 0.42 9.2E-06 42.5 4.6 33 91-124 10-42 (202)
419 PF00899 ThiF: ThiF family; I 90.2 0.33 7.1E-06 40.0 3.6 33 92-125 3-36 (135)
420 PRK15116 sulfur acceptor prote 90.0 0.45 9.7E-06 44.3 4.6 36 90-126 29-65 (268)
421 PRK08293 3-hydroxybutyryl-CoA 89.9 0.4 8.7E-06 44.9 4.3 32 93-125 5-36 (287)
422 PRK07819 3-hydroxybutyryl-CoA 89.9 0.39 8.5E-06 45.1 4.2 33 93-126 7-39 (286)
423 PRK09424 pntA NAD(P) transhydr 89.9 0.36 7.9E-06 49.0 4.2 34 91-125 165-198 (509)
424 KOG4405 GDP dissociation inhib 89.9 0.34 7.4E-06 47.2 3.7 40 90-130 7-46 (547)
425 PRK09260 3-hydroxybutyryl-CoA 89.5 0.42 9.1E-06 44.8 4.1 32 93-125 3-34 (288)
426 cd00401 AdoHcyase S-adenosyl-L 89.4 0.48 1E-05 46.9 4.5 34 91-125 202-235 (413)
427 PRK12921 2-dehydropantoate 2-r 89.0 0.5 1.1E-05 44.4 4.2 30 93-123 2-31 (305)
428 PRK07066 3-hydroxybutyryl-CoA 88.9 0.53 1.1E-05 45.1 4.3 32 93-125 9-40 (321)
429 PRK06522 2-dehydropantoate 2-r 88.9 0.54 1.2E-05 44.1 4.4 31 93-124 2-32 (304)
430 PRK07530 3-hydroxybutyryl-CoA 88.9 0.59 1.3E-05 43.9 4.6 33 92-125 5-37 (292)
431 PRK06035 3-hydroxyacyl-CoA deh 88.8 0.52 1.1E-05 44.3 4.2 32 93-125 5-36 (291)
432 PRK07688 thiamine/molybdopteri 88.8 0.61 1.3E-05 45.0 4.7 34 91-125 24-58 (339)
433 PRK04148 hypothetical protein; 88.7 1.4 3E-05 36.5 6.1 33 92-126 18-50 (134)
434 PRK12475 thiamine/molybdopteri 88.4 0.62 1.3E-05 44.9 4.5 34 91-125 24-58 (338)
435 TIGR02356 adenyl_thiF thiazole 88.4 0.69 1.5E-05 41.1 4.5 34 91-125 21-55 (202)
436 PRK05808 3-hydroxybutyryl-CoA 87.9 0.6 1.3E-05 43.6 4.0 32 93-125 5-36 (282)
437 PTZ00082 L-lactate dehydrogena 87.9 0.91 2E-05 43.4 5.2 34 92-126 7-41 (321)
438 cd05292 LDH_2 A subgroup of L- 87.7 0.75 1.6E-05 43.7 4.5 32 93-125 2-35 (308)
439 cd05311 NAD_bind_2_malic_enz N 87.7 0.73 1.6E-05 41.8 4.2 34 91-125 25-61 (226)
440 COG1748 LYS9 Saccharopine dehy 87.6 0.72 1.6E-05 45.1 4.3 33 92-125 2-35 (389)
441 PRK12549 shikimate 5-dehydroge 87.5 0.71 1.5E-05 43.4 4.2 33 92-125 128-161 (284)
442 PRK00066 ldh L-lactate dehydro 87.3 1 2.2E-05 43.0 5.2 34 91-125 6-41 (315)
443 cd01487 E1_ThiF_like E1_ThiF_l 87.3 0.85 1.8E-05 39.5 4.2 31 94-125 2-33 (174)
444 cd01483 E1_enzyme_family Super 87.2 0.95 2.1E-05 37.6 4.4 32 93-125 1-33 (143)
445 PRK08229 2-dehydropantoate 2-r 87.0 0.77 1.7E-05 44.0 4.2 32 93-125 4-35 (341)
446 PF13478 XdhC_C: XdhC Rossmann 86.9 0.73 1.6E-05 38.3 3.5 32 94-126 1-32 (136)
447 KOG1346 Programmed cell death 86.8 1.5 3.2E-05 43.1 5.8 43 184-243 269-311 (659)
448 TIGR01763 MalateDH_bact malate 86.6 0.93 2E-05 43.0 4.5 32 93-125 3-35 (305)
449 PRK08644 thiamine biosynthesis 86.6 1 2.2E-05 40.4 4.4 34 91-125 28-62 (212)
450 cd01080 NAD_bind_m-THF_DH_Cycl 86.6 1.2 2.6E-05 38.5 4.7 34 90-124 43-77 (168)
451 TIGR02462 pyranose_ox pyranose 86.5 2.1 4.5E-05 44.0 7.2 51 183-242 225-278 (544)
452 TIGR02731 phytoene_desat phyto 85.9 2.8 6.2E-05 41.7 7.8 61 171-241 213-274 (453)
453 PRK12548 shikimate 5-dehydroge 85.5 1.1 2.3E-05 42.3 4.3 33 92-125 127-160 (289)
454 PRK14620 NAD(P)H-dependent gly 85.5 1.1 2.4E-05 42.7 4.5 32 93-125 2-33 (326)
455 PRK06130 3-hydroxybutyryl-CoA 85.5 1.1 2.3E-05 42.5 4.3 32 93-125 6-37 (311)
456 TIGR00936 ahcY adenosylhomocys 85.5 1.1 2.5E-05 44.1 4.5 34 91-125 195-228 (406)
457 PRK05562 precorrin-2 dehydroge 85.4 1.1 2.3E-05 40.6 4.0 33 91-124 25-57 (223)
458 PRK11064 wecC UDP-N-acetyl-D-m 85.3 1.1 2.3E-05 44.5 4.4 33 92-125 4-36 (415)
459 TIGR02355 moeB molybdopterin s 85.2 1.3 2.8E-05 40.5 4.6 34 91-125 24-58 (240)
460 TIGR00561 pntA NAD(P) transhyd 85.2 1 2.3E-05 45.7 4.2 34 91-125 164-197 (511)
461 PLN02545 3-hydroxybutyryl-CoA 84.9 1.2 2.5E-05 42.0 4.2 32 93-125 6-37 (295)
462 cd01075 NAD_bind_Leu_Phe_Val_D 84.7 2 4.2E-05 38.2 5.3 33 91-124 28-60 (200)
463 PRK05690 molybdopterin biosynt 84.6 1.4 3E-05 40.4 4.5 34 91-125 32-66 (245)
464 PRK08328 hypothetical protein; 84.5 1.4 3.1E-05 39.9 4.5 34 91-125 27-61 (231)
465 TIGR03736 PRTRC_ThiF PRTRC sys 84.3 1.4 3E-05 40.5 4.2 36 90-125 10-55 (244)
466 cd01339 LDH-like_MDH L-lactate 84.2 1.2 2.7E-05 42.0 4.1 31 94-125 1-32 (300)
467 COG1063 Tdh Threonine dehydrog 84.2 1.2 2.7E-05 43.0 4.1 32 93-125 171-203 (350)
468 TIGR03026 NDP-sugDHase nucleot 83.8 1.2 2.6E-05 44.1 3.9 32 93-125 2-33 (411)
469 PRK02472 murD UDP-N-acetylmura 83.8 1.5 3.2E-05 43.7 4.6 33 92-125 6-38 (447)
470 COG1004 Ugd Predicted UDP-gluc 83.4 1.4 3E-05 43.0 4.0 32 93-125 2-33 (414)
471 PRK00094 gpsA NAD(P)H-dependen 83.4 1.6 3.5E-05 41.3 4.5 32 93-125 3-34 (325)
472 cd01078 NAD_bind_H4MPT_DH NADP 83.4 1.8 3.9E-05 37.9 4.5 33 91-124 28-61 (194)
473 PRK05476 S-adenosyl-L-homocyst 83.3 1.5 3.3E-05 43.5 4.4 34 91-125 212-245 (425)
474 PRK08306 dipicolinate synthase 83.3 1.8 3.9E-05 40.9 4.7 34 91-125 152-185 (296)
475 cd05291 HicDH_like L-2-hydroxy 83.2 1.7 3.7E-05 41.2 4.6 33 93-126 2-36 (306)
476 PRK04308 murD UDP-N-acetylmura 83.1 2 4.3E-05 42.9 5.2 34 92-126 6-39 (445)
477 cd00755 YgdL_like Family of ac 83.1 1.7 3.8E-05 39.5 4.4 34 91-125 11-45 (231)
478 PRK14618 NAD(P)H-dependent gly 83.1 1.9 4.1E-05 41.2 4.9 32 93-125 6-37 (328)
479 PRK06223 malate dehydrogenase; 83.0 1.8 3.8E-05 41.0 4.6 32 93-125 4-36 (307)
480 cd00757 ThiF_MoeB_HesA_family 83.0 1.8 3.9E-05 39.2 4.4 34 91-125 21-55 (228)
481 PRK11730 fadB multifunctional 82.9 1.3 2.9E-05 47.1 4.1 32 93-125 315-346 (715)
482 PRK12550 shikimate 5-dehydroge 82.9 1.6 3.5E-05 40.7 4.2 33 92-125 123-156 (272)
483 TIGR02279 PaaC-3OHAcCoADH 3-hy 82.9 1.5 3.2E-05 44.8 4.2 33 93-126 7-39 (503)
484 TIGR03467 HpnE squalene-associ 82.8 3.4 7.4E-05 40.2 6.7 49 177-240 203-251 (419)
485 PRK14619 NAD(P)H-dependent gly 82.7 2 4.3E-05 40.7 4.8 33 92-125 5-37 (308)
486 cd01485 E1-1_like Ubiquitin ac 82.5 1.9 4E-05 38.2 4.3 34 91-125 19-53 (198)
487 TIGR02853 spore_dpaA dipicolin 82.4 1.8 4E-05 40.7 4.4 34 91-125 151-184 (287)
488 COG1179 Dinucleotide-utilizing 82.3 1.7 3.6E-05 39.7 3.8 35 91-126 30-65 (263)
489 PRK01710 murD UDP-N-acetylmura 82.3 1.4 3E-05 44.3 3.7 33 92-125 15-47 (458)
490 PRK10669 putative cation:proto 82.2 1.6 3.4E-05 45.1 4.2 35 91-126 417-451 (558)
491 PRK09496 trkA potassium transp 81.9 1.6 3.6E-05 43.4 4.1 32 93-125 2-33 (453)
492 PRK07774 short chain dehydroge 81.8 2.5 5.4E-05 38.0 5.0 33 92-125 7-40 (250)
493 PF00670 AdoHcyase_NAD: S-aden 81.8 1.8 4E-05 37.0 3.7 33 92-125 24-56 (162)
494 PRK07502 cyclohexadienyl dehyd 81.7 2.2 4.7E-05 40.4 4.7 33 92-125 7-41 (307)
495 TIGR02437 FadB fatty oxidation 81.7 1.7 3.7E-05 46.3 4.3 32 93-125 315-346 (714)
496 PRK07576 short chain dehydroge 81.5 2.4 5.3E-05 38.8 4.9 34 91-125 9-43 (264)
497 PRK08268 3-hydroxy-acyl-CoA de 81.4 2.1 4.6E-05 43.7 4.7 34 92-126 8-41 (507)
498 PLN02572 UDP-sulfoquinovose sy 81.3 3.6 7.8E-05 41.1 6.3 30 93-123 49-79 (442)
499 TIGR01809 Shik-DH-AROM shikima 81.2 2.3 4.9E-05 39.9 4.6 34 91-125 125-159 (282)
500 TIGR00507 aroE shikimate 5-deh 81.2 2.1 4.6E-05 39.7 4.4 33 92-125 118-150 (270)
No 1
>PLN02661 Putative thiazole synthesis
Probab=100.00 E-value=1.5e-56 Score=423.10 Aligned_cols=355 Identities=79% Similarity=1.174 Sum_probs=313.3
Q ss_pred CccccccccccCCCCCCCcccccCCCCCCCcccccccccCCCCCcccccccccccCCCCCCCCcccCCCchhhhhHHHHH
Q 018188 1 MAAMSTTLTSSLSSGPKSSFLDHKSSFHGSPIITSRVTPIRSSSQSQTHTISMSLTPQYDFNSFTFDPIKESIVSREMTR 80 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
|++++++..++.+.+.++++..+.++|+|+++.+..+.+.+.++.+ ..+.+.++.+.||++.|+|.+++|.+.+++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~e~~is~~i~~ 81 (357)
T PLN02661 3 IAAAASATSLSSSRELKSSFASSSSSFAGVRLVTSVRAPLADASAP-ARSSSSSSTAPYDLNNFKFAPIKESIVSREMTR 81 (357)
T ss_pred hhHHhHhhhhccccccccccccccccccCccccccccCCccccccc-cccccCCCCCCCccccccceechhhHhhccchH
Confidence 3455556666667888889999999999999999887444222222 222333447779999999999999999999999
Q ss_pred hhhhcccccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCccee
Q 018188 81 RYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDE 160 (359)
Q Consensus 81 ~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~ 160 (359)
+|++++....++||+|||||++|+.+|+.|++++|++|+||||...+||+.|.++..+....++....++|+++|++|+.
T Consensus 82 ~~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~ 161 (357)
T PLN02661 82 RYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDE 161 (357)
T ss_pred hHhhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCccc
Confidence 99999999999999999999999999999997558999999999999999999999888888888888999999999988
Q ss_pred cCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCC
Q 018188 161 QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCG 240 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtG 240 (359)
.+.|....+...+.+.|++++.++.|+++++++.+++++.+++++.|+..+|..+..+++++.+++...|+||.||+|||
T Consensus 162 ~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 162 QENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred CCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 77777777888888899988887789999999999999999999999999988766666655555667899999999999
Q ss_pred CCCCCCchHHHHHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCccceEEEehHHHHH
Q 018188 241 HDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAH 320 (359)
Q Consensus 241 g~s~~~~~g~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g~~l~sG~~~~~ 320 (359)
+.++.++.+++++.++|+..++|++.+++++..|+.+++.++|++||+|+.||++..++|.+||||+||+|++||.++++
T Consensus 242 h~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~ 321 (357)
T PLN02661 242 HDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAH 321 (357)
T ss_pred CCCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccccCCcccccccCchhhhhccCccccccC
Q 018188 321 LALKALGQPNAIDGTFSEVTEVQPEFVLAATENSEIVDA 359 (359)
Q Consensus 321 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (359)
+++++|+.++.+|++. ...++||+|| +++++|++||
T Consensus 322 ~~~~~l~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~ 357 (357)
T PLN02661 322 LALKALGLPNALDGTY--KPNLHPELVL-AADDDETADA 357 (357)
T ss_pred HHHHHHccchhhcchh--hhccchhhhh-ccCccccccC
Confidence 9999999998899886 6679999999 8889999986
No 2
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=100.00 E-value=4.2e-52 Score=358.30 Aligned_cols=320 Identities=65% Similarity=1.009 Sum_probs=289.1
Q ss_pred CccccccccccCCCCCCC-cccccCCCCCCCcccccccccCCCCCcccccccccccCCCCCCCCcccCCCchhhhhHHHH
Q 018188 1 MAAMSTTLTSSLSSGPKS-SFLDHKSSFHGSPIITSRVTPIRSSSQSQTHTISMSLTPQYDFNSFTFDPIKESIVSREMT 79 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 79 (359)
|++.++++.. +.+++ .+++ ++|||+.+....+ +-|.+ .++-+ .|...|+|.|++|+..+|+|+
T Consensus 1 m~Ata~~ts~---sa~k~~~~~d--~~~H~s~~~s~p~---~~~l~----~~~~s----~d~s~F~FaPIrEStVSRaMT 64 (328)
T KOG2960|consen 1 MSATATATST---SASKPQRLFD--SQLHGSALNSTPV---THCLS----DIVKS----EDWSDFKFAPIRESTVSRAMT 64 (328)
T ss_pred CCccceeccc---cccCcccchh--hhhhhhhhccCcc---ccccc----ccccc----cccccccccchhHHHHHHHHH
Confidence 5555555544 44566 6666 8899987776554 22211 11112 455689999999999999999
Q ss_pred HhhhhcccccCcccEEEECCChHHHHHHHHhhc-CCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcc
Q 018188 80 RRYMTDMVTYADTDVIVVGAGSAGLSCAYEISK-NPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEY 158 (359)
Q Consensus 80 ~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~-~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~ 158 (359)
++|++++....+.||||||+|.+||++||..++ +|.++|.|||..-.|||+.|.+|++|+.+.++.+..-||+++|++|
T Consensus 65 rRYf~DldkyAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpY 144 (328)
T KOG2960|consen 65 RRYFKDLDKYAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPY 144 (328)
T ss_pred HHHHHHHHhhhccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCc
Confidence 999999999999999999999999999999984 6899999999999999999999999999999999999999999999
Q ss_pred eecCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCC-----EEEEEEEceeeeeccCCCCCCCCCeEEEcC
Q 018188 159 DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-----RVGGVVTNWALVSMNHDTQSCMDPNVMEAK 233 (359)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~-----~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~ 233 (359)
+.+++|.+..|+..|...++.+.+..+|+++++.+.|++++...+ +|.||.++|.++..++++|.|.+...+++.
T Consensus 145 edegdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~ 224 (328)
T KOG2960|consen 145 EDEGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAA 224 (328)
T ss_pred ccCCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEE
Confidence 999999999999999999999999999999999999999987632 688999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCchHHHHHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCccceEEE
Q 018188 234 IVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMI 313 (359)
Q Consensus 234 ~VIlAtGg~s~~~~~g~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g~~l~ 313 (359)
.||-+||+.||+|+.+++++.+++....++++++++|++.++.++..+++++||+++.||++..++|.+||||+||+|++
T Consensus 225 ~vvS~tGHDGPFGAfcvKRl~si~~~~~l~gMk~LDMN~AEd~iV~~trevvpgMiv~GMEvaE~DGanRMGPTFGaMm~ 304 (328)
T KOG2960|consen 225 VVVSTTGHDGPFGAFCVKRLVSIDQNQKLGGMKGLDMNHAEDDIVIHTREVVPGMIVAGMEVAELDGANRMGPTFGAMML 304 (328)
T ss_pred EEEEccCCCCCchhHHHHHHhhhhhhhhcCCCccccccchhhhhhhhhhhccCceEEeeeeeeeccCCcccCcchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehHHHHHHHHHHhCCCccccCCc
Q 018188 314 SGQKAAHLALKALGQPNAIDGTF 336 (359)
Q Consensus 314 sG~~~~~l~l~~~~~~~~~~~~~ 336 (359)
||.++++++|+.+..|++.|+++
T Consensus 305 SG~kAaq~aLk~f~~~~aid~~~ 327 (328)
T KOG2960|consen 305 SGVKAAQQALKHFAAPNAIDGTL 327 (328)
T ss_pred cchhHHHHHHHHhcCcccccccc
Confidence 99999999999999999999886
No 3
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-45 Score=318.83 Aligned_cols=259 Identities=42% Similarity=0.763 Sum_probs=238.1
Q ss_pred CcccCCCchhhhhHHHHHhhhhcccccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehh
Q 018188 63 SFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV 142 (359)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~ 142 (359)
++.|.++.|...+|+|+++|+++.....+.||+||||||+||+||++|+++ |+||+|+||+..+||+.|.+|.+|+...
T Consensus 2 ~~~f~~~~E~~itraI~~~~~~~l~~~~esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~ls~GGG~w~GGmlf~~iV 80 (262)
T COG1635 2 SFKFAPLREVKITRAITERYFEDLLDYLESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKLSFGGGIWGGGMLFNKIV 80 (262)
T ss_pred CccccchhhHHHHHHHHHHHHHHHHhhhhccEEEECcCcchHHHHHHHHhC-CceEEEEEeecccCCcccccccccceee
Confidence 577889999999999999999999888899999999999999999999999 9999999999999999999999999999
Q ss_pred cchhHHHHHHHcCCcceecCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCC-EEEEEEEceeeeeccCCC
Q 018188 143 VRKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDT 221 (359)
Q Consensus 143 ~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~-~v~gv~~~~~~~~~~~~~ 221 (359)
++.+..++|+++|++|...+++.+..++.++...|..++. +.|++|++.+.|++++..++ +|.||..+|+.++..+
T Consensus 81 v~~~a~~iL~e~gI~ye~~e~g~~v~ds~e~~skl~~~a~-~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~-- 157 (262)
T COG1635 81 VREEADEILDEFGIRYEEEEDGYYVADSAEFASKLAARAL-DAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG-- 157 (262)
T ss_pred ecchHHHHHHHhCCcceecCCceEEecHHHHHHHHHHHHH-hcCceeeecceEEEEEEecCCceEEEEEecchhhhcc--
Confidence 9999999999999999999888888899999999999887 78999999999999998877 8999999999887765
Q ss_pred CCCCCCeEEEcCEEEEcCCCCCCCCchHHHHHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCC
Q 018188 222 QSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGA 301 (359)
Q Consensus 222 ~~~g~~~~i~A~~VIlAtGg~s~~~~~g~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~ 301 (359)
.|.|+.+++|++||.|||+.+...+...++...+++ .+|++.++|.+..++.++..+++++||+|+.||+++.++|.
T Consensus 158 -lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~l~~--~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~ 234 (262)
T COG1635 158 -LHVDPLTIRAKAVVDATGHDAEVVSFLAKRIPELGI--EVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGL 234 (262)
T ss_pred -cccCcceeeEEEEEeCCCCchHHHHHHHHhcccccc--ccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCC
Confidence 567899999999999999988655444444433333 78999999999999999999999999999999999999999
Q ss_pred CCCCCccceEEEehHHHHHHHHHHhCC
Q 018188 302 PRMGPTFGAMMISGQKAAHLALKALGQ 328 (359)
Q Consensus 302 ~~~~~~~g~~l~sG~~~~~l~l~~~~~ 328 (359)
+||||+||+|++||++++++++++|+.
T Consensus 235 pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 235 PRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred cccCchhhhhhhchHHHHHHHHHHhhc
Confidence 999999999999999999999999864
No 4
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=100.00 E-value=6e-39 Score=295.46 Aligned_cols=252 Identities=41% Similarity=0.726 Sum_probs=214.3
Q ss_pred hhhhhHHHHHhhhhcccccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHH
Q 018188 71 ESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRF 150 (359)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~ 150 (359)
|.+.+|+|+++|+.++....++||+|||||++|+++|+.|+++ |++|+||||+..+||+.|.++..+....++....++
T Consensus 1 e~~~~~~~~~~~~~~~~~~~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~ 79 (254)
T TIGR00292 1 ESKISRAIVERYFEDLLDYAESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEI 79 (254)
T ss_pred CchhHHHHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCccccCCCcceecccccchHHHH
Confidence 3567899999999999888999999999999999999999999 999999999999999999888888877777888899
Q ss_pred HHHcCCcceecCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCC--EEEEEEEceeeeeccCCCCCCCCCe
Q 018188 151 LDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPN 228 (359)
Q Consensus 151 l~~~G~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~--~v~gv~~~~~~~~~~~~~~~~g~~~ 228 (359)
++++|++|.......+..+..++.+.|++++. +.|+++++++.|+++..+++ ++.||.++|..+..++. +.+..
T Consensus 80 l~~~gi~~~~~~~g~~~~~~~el~~~L~~~a~-e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~---~~d~~ 155 (254)
T TIGR00292 80 LDEFGIRYEDEGDGYVVADSAEFISTLASKAL-QAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGL---HVDPL 155 (254)
T ss_pred HHHCCCCeeeccCceEEeeHHHHHHHHHHHHH-HcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCC---CCCCE
Confidence 99999999876554445567788889888776 67999999999999998776 69999998764433321 22467
Q ss_pred EEEcCEEEEcCCCCCCCCchHHHHHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCcc
Q 018188 229 VMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTF 308 (359)
Q Consensus 229 ~i~A~~VIlAtGg~s~~~~~g~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~ 308 (359)
+++|+.||+|||+.+...+...+++......+.++++.++|++..++.+++.+++++||+|+.||++..++|.+||||+|
T Consensus 156 ~i~Ak~VVdATG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~f 235 (254)
T TIGR00292 156 TQRSRVVVDATGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIF 235 (254)
T ss_pred EEEcCEEEEeecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchH
Confidence 89999999999998865544444433211244579999999999999999999999999999999999999999999999
Q ss_pred ceEEEehHHHHHHHHHHhC
Q 018188 309 GAMMISGQKAAHLALKALG 327 (359)
Q Consensus 309 g~~l~sG~~~~~l~l~~~~ 327 (359)
|+|++||.+++++++++|+
T Consensus 236 g~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 236 GGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred HHHHHhhHHHHHHHHHHhC
Confidence 9999999999999999874
No 5
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=100.00 E-value=7.8e-38 Score=288.83 Aligned_cols=254 Identities=36% Similarity=0.656 Sum_probs=213.4
Q ss_pred CCchhhhhHHHHHhhhhcccccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhH
Q 018188 68 PIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPA 147 (359)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~ 147 (359)
+++|.+.+|+|+++|++++....++||+|||||++|++||+.|++. |++|+|+||...+||+.|.++..++...++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~ 80 (257)
T PRK04176 2 ELDEVKITRAIVEEYFEKLLDYLEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEA 80 (257)
T ss_pred CchHHHHHHHHHHHHHHHHHHhccCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCCCCccccCccccccccchHHH
Confidence 4678899999999999999988899999999999999999999999 999999999999999888888777777777788
Q ss_pred HHHHHHcCCcceecCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCC-EEEEEEEceeeeeccCCCCCCCC
Q 018188 148 QRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMD 226 (359)
Q Consensus 148 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~ 226 (359)
.++++++|++|.......+..+...+...|.+++. +.|++++++++|+++..+++ ++.|+.++|..+..++ .+.+
T Consensus 81 ~~~l~~~gv~~~~~~~g~~~vd~~~l~~~L~~~A~-~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g---~~~~ 156 (257)
T PRK04176 81 DEILDEFGIRYKEVEDGLYVADSVEAAAKLAAAAI-DAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG---LHVD 156 (257)
T ss_pred HHHHHHCCCCceeecCcceeccHHHHHHHHHHHHH-HcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC---CCCC
Confidence 89999999998765332334566788888888876 67999999999999988665 8999988775332211 1224
Q ss_pred CeEEEcCEEEEcCCCCCCCCchHHHHHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCC
Q 018188 227 PNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGP 306 (359)
Q Consensus 227 ~~~i~A~~VIlAtGg~s~~~~~g~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~ 306 (359)
..+++|+.||+|||+++...+.-.++.. .....+|++.++|.+..++.++..+++++||+|+.||++...+|.+||||
T Consensus 157 ~~~i~Ak~VI~ATG~~a~v~~~l~~~~~--~~~~~~~g~~~~~~~~~e~~v~~~t~~~~~g~~~~gm~~~~~~~~~rmg~ 234 (257)
T PRK04176 157 PLTIEAKAVVDATGHDAEVVSVLARKGP--ELGIEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPRMGP 234 (257)
T ss_pred cEEEEcCEEEEEeCCCcHHHHHHHHHcC--CcccccCCccccccCchHHHHHhcCCeEcCCEEEeehhhhhhcCCCccCc
Confidence 5789999999999988854432222222 12346799999999999999999999999999999999999999999999
Q ss_pred ccceEEEehHHHHHHHHHHhCC
Q 018188 307 TFGAMMISGQKAAHLALKALGQ 328 (359)
Q Consensus 307 ~~g~~l~sG~~~~~l~l~~~~~ 328 (359)
+||+|++||.+++++++++|+.
T Consensus 235 ~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 235 IFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred hhHhHHHhHHHHHHHHHHHhhc
Confidence 9999999999999999999875
No 6
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=100.00 E-value=4.4e-38 Score=275.13 Aligned_cols=229 Identities=43% Similarity=0.741 Sum_probs=185.9
Q ss_pred hHHHHHhhhhcccccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHc
Q 018188 75 SREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDEL 154 (359)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~ 154 (359)
+|+|+++|++++.+..++||+||||||+||.||+.|+++ |+||+|+|++..+||+.|.+|.+|+...++.+...+|+++
T Consensus 1 sraI~~~~~~~l~~~~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el 79 (230)
T PF01946_consen 1 SRAIIERYFEDLYDYLEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL 79 (230)
T ss_dssp HHHHHHHHHHHHHHHTEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhhccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC
Confidence 478899999998888899999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcceecCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeC-CEEEEEEEceeeeeccCCCCCCCCCeEEEcC
Q 018188 155 GVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAK 233 (359)
Q Consensus 155 G~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~ 233 (359)
|++|...+++.+..++.++...|..++. +.|++|++.+.|+++...+ ++|.|+..+|..+....- +.|+.+|+|+
T Consensus 80 gi~y~~~~~g~~v~d~~~~~s~L~s~a~-~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~gl---HvDPl~i~ak 155 (230)
T PF01946_consen 80 GIPYEEYGDGYYVADSVEFTSTLASKAI-DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGL---HVDPLTIRAK 155 (230)
T ss_dssp T---EE-SSEEEES-HHHHHHHHHHHHH-TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT-----T-B-EEEEES
T ss_pred CceeEEeCCeEEEEcHHHHHHHHHHHHh-cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhc---CCCcceEEEe
Confidence 9999998888888999999999999998 5999999999999999887 899999999998877642 3478899999
Q ss_pred EEEEcCCCCCCCCchHHHHHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCcc
Q 018188 234 IVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTF 308 (359)
Q Consensus 234 ~VIlAtGg~s~~~~~g~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~ 308 (359)
+||.|||+.+...+...++....+....++++.++|++..++.++..++|++||+|+.||++...+|.+||||+|
T Consensus 156 ~ViDaTGHda~v~~~~~kk~~~~~~~~~v~Ge~~m~~~~~E~~vV~~T~eV~PGL~v~GMa~~av~G~~RMGPiF 230 (230)
T PF01946_consen 156 VVIDATGHDAEVVRVLAKKLKLLTPTGKVPGEKSMWAERGEDLVVENTREVYPGLYVAGMAANAVDGGPRMGPIF 230 (230)
T ss_dssp EEEE---SSSSSTSHHHHHHHHTTSSS-----EEB-HHHHHHHHHHCEEEEETTEEE-THHHHHHHT-EB-SSB-
T ss_pred EEEeCCCCchHHHHHHHHHhhhcccccccCCCCCcCcchhHHHHHHhhccccCCEEEechhhHhhcCCCCCCCCC
Confidence 999999999999988888887766666799999999999999999999999999999999999999999999987
No 7
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.88 E-value=1.2e-21 Score=191.67 Aligned_cols=205 Identities=23% Similarity=0.338 Sum_probs=134.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC--------CcccCC-----ccee-e----------h---hcc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG--------GAWLGG-----QLFS-A----------M---VVR 144 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG--------~~~~~g-----~~~~-~----------~---~~~ 144 (359)
|||+|||||++|++||+.|++. |.+|+|+||+..+|- .|.... ..|. . . ...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~-g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~ 79 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK-GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSP 79 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-H
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCH
Confidence 7999999999999999999999 999999999998862 221111 0011 0 0 011
Q ss_pred hhHHHHHHHcCCcceecCC---eEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCC
Q 018188 145 KPAQRFLDELGVEYDEQDN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT 221 (359)
Q Consensus 145 ~~~~~~l~~~G~~~~~~~~---~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~ 221 (359)
.+..+|++++|+++...++ |+....+.++.+.|+..+. +.|++++++++|.+++.+++.+..|.+.
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~-~~gv~i~~~~~V~~i~~~~~~~f~v~~~---------- 148 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELK-RLGVEIHFNTRVKSIEKKEDGVFGVKTK---------- 148 (409)
T ss_dssp HHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHH-HHT-EEE-S--EEEEEEETTEEEEEEET----------
T ss_pred HHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHH-HcCCEEEeCCEeeeeeecCCceeEeecc----------
Confidence 3567899999998876533 3334467788888888875 6899999999999999988887778773
Q ss_pred CCCCCCeEEEcCEEEEcCCCCCCC--Cc--hHHHHHHhcCC--cccccccccccccchhhHH--hhhccccCCCeeEece
Q 018188 222 QSCMDPNVMEAKIVVSSCGHDGPF--GA--TGVKRLKSIGM--IDSVPGMKALDMNTAEDAI--VRLTREIVPGMIVTGM 293 (359)
Q Consensus 222 ~~~g~~~~i~A~~VIlAtGg~s~~--~~--~g~~~~~~~g~--~~~~p~~~~~~~~~~~~~~--~~~~~~~~~g~~~~g~ 293 (359)
+...+.||.||+||||.+.+ |. .|++.++.+|| +++.|.++++.++ ++++ ..+ .|+.+.+.
T Consensus 149 ----~~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i~~~~PaL~~l~~~--~~~~~~~~l-----~Gv~~~~~ 217 (409)
T PF03486_consen 149 ----NGGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTITPPYPALVPLKCD--EPWLFFKEL-----SGVRLKAV 217 (409)
T ss_dssp ----TTEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--EEEEEEES--EE----HHHHHTGGG-----TT-EEEEE
T ss_pred ----CcccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcEecCCCccCCeeec--chhhhhhhh-----CCCceeeE
Confidence 24789999999999997642 22 79999999998 8899999998876 4444 556 89988876
Q ss_pred EEEeecCCCCCCCccceEE-----EehHHHHHH
Q 018188 294 EVAEIDGAPRMGPTFGAMM-----ISGQKAAHL 321 (359)
Q Consensus 294 ~v~~~~g~~~~~~~~g~~l-----~sG~~~~~l 321 (359)
...+ .........|+++ +|||.++++
T Consensus 218 ~~~~--~~~~~~~~~GellfT~~GiSGp~il~l 248 (409)
T PF03486_consen 218 ISLL--DGKKKASETGELLFTHYGISGPAILQL 248 (409)
T ss_dssp EEEE---ECTCEEEEEEEEE-SSEEESHHHHHH
T ss_pred EEEe--ccCCccceeeeEEEECCccchHHHHHH
Confidence 6555 3445566889999 999999999
No 8
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.86 E-value=1.6e-20 Score=177.88 Aligned_cols=205 Identities=18% Similarity=0.284 Sum_probs=154.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCC-cc--------e--------------ee---hhcc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGG-QL--------F--------------SA---MVVR 144 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g-~~--------~--------------~~---~~~~ 144 (359)
.+||+|||||+||++||..++++ |.+|+|||+++.+|-.....| +. + .. ...+
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 48999999999999999999999 999999999998863322111 11 1 11 1122
Q ss_pred hhHHHHHHHcCCcceecCCeEE---EechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCC
Q 018188 145 KPAQRFLDELGVEYDEQDNYVV---IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT 221 (359)
Q Consensus 145 ~~~~~~l~~~G~~~~~~~~~~~---~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~ 221 (359)
.+.++|++.+|+.+......++ ...+..+++.|+.++. +.||+++++++|.++..++... .+.+.
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~-~~gV~i~~~~~v~~v~~~~~~f-~l~t~---------- 149 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELE-ALGVTIRTRSRVSSVEKDDSGF-RLDTS---------- 149 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHH-HcCcEEEecceEEeEEecCceE-EEEcC----------
Confidence 4678999999999988765444 4567888999988885 7899999999999998877433 34443
Q ss_pred CCCCCCeEEEcCEEEEcCCCCCC--CCc--hHHHHHHhcCC--cccccccccccccchhhHHhhhccccCCCeeEeceEE
Q 018188 222 QSCMDPNVMEAKIVVSSCGHDGP--FGA--TGVKRLKSIGM--IDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEV 295 (359)
Q Consensus 222 ~~~g~~~~i~A~~VIlAtGg~s~--~~~--~g~~~~~~~g~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v 295 (359)
+..+|+||.+|+||||.|. .|+ .|+++++.+|+ .++.|.++++.++ +..+..+ .|+.+.++.+
T Consensus 150 ----~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I~~~rpalvpft~~--~~~~~~l-----~gls~~~v~~ 218 (408)
T COG2081 150 ----SGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTITPLRPALVPFTLD--ESFLERL-----AGLSLKSVPL 218 (408)
T ss_pred ----CCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCccccCccccCCccCC--HHHHHHh-----cCCcccceEE
Confidence 2348999999999998774 344 68999999997 8999999998887 3333333 8888888888
Q ss_pred EeecCCCCCCCccceEE-----EehHHHHHH
Q 018188 296 AEIDGAPRMGPTFGAMM-----ISGQKAAHL 321 (359)
Q Consensus 296 ~~~~g~~~~~~~~g~~l-----~sG~~~~~l 321 (359)
.+..+.. ....|+|+ +|||.+.++
T Consensus 219 ~v~~~~g--~~~~g~~LfTh~GiSGPavl~~ 247 (408)
T COG2081 219 SVTAGKG--ITFQGDLLFTHRGLSGPAVLQL 247 (408)
T ss_pred EEecCCC--ceeecceEEEecCCcHHHHHHH
Confidence 7775531 12337777 999999998
No 9
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.64 E-value=9.6e-15 Score=143.63 Aligned_cols=202 Identities=21% Similarity=0.372 Sum_probs=138.7
Q ss_pred EEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCC-ccee--------e---------hh--------cchhHH
Q 018188 95 IVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGG-QLFS--------A---------MV--------VRKPAQ 148 (359)
Q Consensus 95 vIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g-~~~~--------~---------~~--------~~~~~~ 148 (359)
+|||||++|++||+.|+++ |.+|+|+||+..+|++....| +.++ . .. ...+..
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence 6999999999999999999 999999999998876532211 1110 0 00 012455
Q ss_pred HHHHHcCCcceecCCeE---EEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCC
Q 018188 149 RFLDELGVEYDEQDNYV---VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM 225 (359)
Q Consensus 149 ~~l~~~G~~~~~~~~~~---~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g 225 (359)
+|++++|+++....... .......+.+.|.+.+. +.|++++++++|+++..+++.+ .+...
T Consensus 80 ~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~-~~gv~i~~~~~V~~i~~~~~~~-~v~~~-------------- 143 (400)
T TIGR00275 80 DFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELK-ELGVEILTNSKVKSIKKDDNGF-GVETS-------------- 143 (400)
T ss_pred HHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHH-HCCCEEEeCCEEEEEEecCCeE-EEEEC--------------
Confidence 78888998877643322 23345677778777765 6799999999999997665533 34331
Q ss_pred CCeEEEcCEEEEcCCCCCC--CCc--hHHHHHHhcCC--cccccccccccccchhhHHhhhccccCCCeeEeceEEEeec
Q 018188 226 DPNVMEAKIVVSSCGHDGP--FGA--TGVKRLKSIGM--IDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEID 299 (359)
Q Consensus 226 ~~~~i~A~~VIlAtGg~s~--~~~--~g~~~~~~~g~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~ 299 (359)
..++.+|.||+|+|+.+. .+. .++..+..+|+ .++.|.+.++..+. ++...+ .|+.+.+... +..
T Consensus 144 -~~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~i~~~~P~l~~l~~~~--~~~~~l-----~Gv~~~~~~~-~~~ 214 (400)
T TIGR00275 144 -GGEYEADKVILATGGLSYPQLGSTGDGYEIAESLGHTIVPPVPALVPLTLDE--SFLKEL-----SGISLDGVVL-SLV 214 (400)
T ss_pred -CcEEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCCEecccceEeEEEeCC--cccccC-----CCCcCccEEE-Eec
Confidence 256899999999998763 222 67888999987 57889988877653 333333 6766655422 322
Q ss_pred CCCCCCCccceEE-----EehHHHHHHH
Q 018188 300 GAPRMGPTFGAMM-----ISGQKAAHLA 322 (359)
Q Consensus 300 g~~~~~~~~g~~l-----~sG~~~~~l~ 322 (359)
.+.+.....|+++ +|||.++++-
T Consensus 215 ~~~~~~~~~g~llft~~gisG~~vl~~s 242 (400)
T TIGR00275 215 NGKKVLEEFGDLLFTHFGLSGPAILDLS 242 (400)
T ss_pred CCcEEEeecccEEEECCCcCHHHHHHHH
Confidence 2334445678888 9999999984
No 10
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.59 E-value=2.7e-14 Score=141.77 Aligned_cols=156 Identities=17% Similarity=0.263 Sum_probs=109.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc-CCccee-----------------------ehhc--
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL-GGQLFS-----------------------AMVV-- 143 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~-~g~~~~-----------------------~~~~-- 143 (359)
.++||||||+|.+|++||+.+ .. |.+|+||||....||++.. .|++.. .-++
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a-~~-G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~ 80 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNL-RK-DLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKI 80 (433)
T ss_pred ccccEEEECchHHHHHHHHHh-cc-CCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHH
Confidence 358999999999999999997 46 9999999999887776532 222210 0000
Q ss_pred ----chhHHHHHHHcCCcceecCCeE-----------EEe-----chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCC
Q 018188 144 ----RKPAQRFLDELGVEYDEQDNYV-----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG 203 (359)
Q Consensus 144 ----~~~~~~~l~~~G~~~~~~~~~~-----------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~ 203 (359)
..+..+||.++|++|+...... ... ....+...|++.+.++.|+++++++++++|+.+++
T Consensus 81 ~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~ 160 (433)
T PRK06175 81 LANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDN 160 (433)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCC
Confidence 1346689999999886532110 111 23456778877776567999999999999988888
Q ss_pred EEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCC--------C--chHHHHHHhcCC
Q 018188 204 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPF--------G--ATGVKRLKSIGM 258 (359)
Q Consensus 204 ~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~--------~--~~g~~~~~~~g~ 258 (359)
+|.||.... ++....+.||.||+|||+++.. + -.++..+...|.
T Consensus 161 ~v~Gv~~~~-----------~g~~~~i~Ak~VILAtGG~~~l~~~~~~~~~~tGdg~~ma~~~Ga 214 (433)
T PRK06175 161 TCIGAICLK-----------DNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNI 214 (433)
T ss_pred EEEEEEEEE-----------CCcEEEEEcCeEEEccCcccccCcCcCCCCCcchHHHHHHHHcCC
Confidence 888876531 1123479999999999997631 1 156677777665
No 11
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.58 E-value=2.9e-14 Score=146.05 Aligned_cols=143 Identities=24% Similarity=0.365 Sum_probs=102.4
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc-cCCcceee-----------------------hhc--
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW-LGGQLFSA-----------------------MVV-- 143 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~-~~g~~~~~-----------------------~~~-- 143 (359)
.++||||||+|.||++||+.+++. |++|+||||....+|++. .+|++... ...
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~-G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~ 82 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASA-GFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQ 82 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHC-CCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCH
Confidence 358999999999999999999999 999999999976655432 22222100 000
Q ss_pred ---------chhHHHHHHHcCCcceecCC------------eEEEe-----chHHHHHHHHHHHHhCCCcEEEcceeeee
Q 018188 144 ---------RKPAQRFLDELGVEYDEQDN------------YVVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAED 197 (359)
Q Consensus 144 ---------~~~~~~~l~~~G~~~~~~~~------------~~~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~~V~~ 197 (359)
....++||+++|++|+...+ +.... ....++..|.+.+. +.|+++++++.+++
T Consensus 83 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~~~~ 161 (566)
T PRK06452 83 DAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTS-GLNVDFYNEWFSLD 161 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHH-hCCCEEEeCcEEEE
Confidence 02356899999999975321 11111 13456777777765 56999999999999
Q ss_pred EEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 198 LIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 198 l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
|+.++++|.||.+.+ .+ .+....+.|+.||+||||++
T Consensus 162 Li~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 162 LVTDNKKVVGIVAMQ------MK---TLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred EEEECCEEEEEEEEE------CC---CCeEEEEEeCeEEECCCccc
Confidence 999889999998742 11 11235789999999999987
No 12
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.58 E-value=3.9e-14 Score=146.46 Aligned_cols=143 Identities=21% Similarity=0.271 Sum_probs=102.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc-CCccee--------------------------eh--
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL-GGQLFS--------------------------AM-- 141 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~-~g~~~~--------------------------~~-- 141 (359)
++||||||+|.||++||+.+++. |++|+||||....+|++.. .|++.. .-
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~-G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv 128 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEH-GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 128 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhc-CCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 58999999999999999999999 9999999999876655422 222110 00
Q ss_pred --hc--chhHHHHHHHcCCcceecCC--e------------------EEEe-----chHHHHHHHHHHHHhCCCcEEEcc
Q 018188 142 --VV--RKPAQRFLDELGVEYDEQDN--Y------------------VVIK-----HAALFTSTIMSKLLARPNVKLFNA 192 (359)
Q Consensus 142 --~~--~~~~~~~l~~~G~~~~~~~~--~------------------~~~~-----~~~~~~~~L~~~~~~~~gv~i~~~ 192 (359)
++ .+..++||+++|++|+.... + .... ....++..|.+.+. +.|++++.+
T Consensus 129 ~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~-~~gv~i~~~ 207 (635)
T PLN00128 129 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAM-KHNTQFFVE 207 (635)
T ss_pred HHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHH-hCCCEEEEe
Confidence 00 12466899999999975321 0 0111 13456778877775 579999999
Q ss_pred eeeeeEEEe-CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 193 VAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 193 ~~V~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+.+++|+.+ +++|.|+.+.+ . .++....|.|+.||+||||++.
T Consensus 208 ~~~~~Li~~~~g~v~Gv~~~~------~---~~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 208 YFALDLIMDSDGACQGVIALN------M---EDGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred eEEEEEEEcCCCEEEEEEEEE------c---CCCeEEEEEcCeEEECCCCCcc
Confidence 999999886 68999987631 1 1223468899999999999873
No 13
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.58 E-value=4.1e-14 Score=146.11 Aligned_cols=144 Identities=22% Similarity=0.261 Sum_probs=103.4
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc-CCcceee--------------------------h-
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL-GGQLFSA--------------------------M- 141 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~-~g~~~~~--------------------------~- 141 (359)
.++||||||+|.||++||+.+++. |++|+||||....+|++.. .|++... -
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l 106 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVEL-GYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 106 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 368999999999999999999999 9999999999876665432 2221100 0
Q ss_pred ---hc--chhHHHHHHHcCCcceecCC--eE------------------EEe-----chHHHHHHHHHHHHhCCCcEEEc
Q 018188 142 ---VV--RKPAQRFLDELGVEYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFN 191 (359)
Q Consensus 142 ---~~--~~~~~~~l~~~G~~~~~~~~--~~------------------~~~-----~~~~~~~~L~~~~~~~~gv~i~~ 191 (359)
+. ....++||+++|++|+.... +. ... ....++..|.+.+. +.|+++++
T Consensus 107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~-~~gv~i~~ 185 (617)
T PTZ00139 107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSL-KYDCNFFI 185 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHH-hCCCEEEe
Confidence 00 12466899999999975421 10 111 12466778777775 67999999
Q ss_pred ceeeeeEEE-eCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 192 AVAAEDLIV-KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 192 ~~~V~~l~~-~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++.+++|+. ++++|.||.... .. ++....|.|+.||+||||++.
T Consensus 186 ~~~~~~Li~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 186 EYFALDLIMDEDGECRGVIAMS------ME---DGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred ceEEEEEEECCCCEEEEEEEEE------CC---CCeEEEEECCcEEEeCCCCcc
Confidence 999999998 578999987631 11 223467899999999999873
No 14
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.58 E-value=3.2e-14 Score=146.25 Aligned_cols=144 Identities=24% Similarity=0.324 Sum_probs=102.6
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCC---CeEEEEeeccCCCCCccc-CCcceee-------------------------
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPS---IRVAIIEQSVSPGGGAWL-GGQLFSA------------------------- 140 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G---~~V~vlEk~~~~GG~~~~-~g~~~~~------------------------- 140 (359)
.++||||||+|.|||+||+.+++. | .+|+||||....++++.. +|++...
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~-G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d 82 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAER-SGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLAD 82 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHh-CCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCC
Confidence 358999999999999999999998 7 899999999877665432 2221100
Q ss_pred -hhc------chhHHHHHHHcCCcceecCC--e----------EEEec-----hHHHHHHHHHHHHhCCCcEEEcceeee
Q 018188 141 -MVV------RKPAQRFLDELGVEYDEQDN--Y----------VVIKH-----AALFTSTIMSKLLARPNVKLFNAVAAE 196 (359)
Q Consensus 141 -~~~------~~~~~~~l~~~G~~~~~~~~--~----------~~~~~-----~~~~~~~L~~~~~~~~gv~i~~~~~V~ 196 (359)
-++ ....++||+++|++|+.... + +...+ ...+...|.+++.+..|+++++++.++
T Consensus 83 ~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~ 162 (577)
T PRK06069 83 QDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVT 162 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEE
Confidence 000 12456899999999975422 1 11111 234677787777655799999999999
Q ss_pred eEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 197 DLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 197 ~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+++.++++|.|+.+.. .. ++....+.|+.||+|||+++
T Consensus 163 ~Li~~~g~v~Gv~~~~------~~---~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 163 SLIVENGVFKGVTAID------LK---RGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred EEEEECCEEEEEEEEE------cC---CCeEEEEECCcEEEcCchhc
Confidence 9998888999987631 11 11235789999999999985
No 15
>PRK07121 hypothetical protein; Validated
Probab=99.56 E-value=8.3e-14 Score=140.63 Aligned_cols=141 Identities=27% Similarity=0.378 Sum_probs=100.8
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceee----------------------h------
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSA----------------------M------ 141 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~----------------------~------ 141 (359)
.++||||||+|.+|++||++|+++ |++|+||||....||++...++.+.. +
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~-G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~~ 97 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAA-GARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGP 97 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999999999 99999999998888766443322100 0
Q ss_pred -----h------cchhHHHHHHHcCCcceecCC--------------e-------------------EEEe------chH
Q 018188 142 -----V------VRKPAQRFLDELGVEYDEQDN--------------Y-------------------VVIK------HAA 171 (359)
Q Consensus 142 -----~------~~~~~~~~l~~~G~~~~~~~~--------------~-------------------~~~~------~~~ 171 (359)
+ ...+.++||+++|++|..... + .... ...
T Consensus 98 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 177 (492)
T PRK07121 98 GVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGGGA 177 (492)
T ss_pred CCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCchH
Confidence 0 012356899999988864210 0 0000 234
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeC-CEEEEEEEceeeeeccCCCCCCCCCeEEEc-CEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A-~~VIlAtGg~s 243 (359)
.+...|.+.+. +.|++++++++|++|+.++ ++|.||+... .+....++| +.||+|||+++
T Consensus 178 ~~~~~L~~~~~-~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----------~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 178 MLMDPLAKRAA-ALGVQIRYDTRATRLIVDDDGRVVGVEARR-----------YGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----------CCcEEEEEeCCEEEECCCCcC
Confidence 56677766664 6799999999999999864 6899987741 112357899 99999999876
No 16
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.56 E-value=6.4e-14 Score=144.34 Aligned_cols=144 Identities=24% Similarity=0.290 Sum_probs=101.4
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc-cCCcce--------ee------------------hh
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW-LGGQLF--------SA------------------MV 142 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~-~~g~~~--------~~------------------~~ 142 (359)
.++||||||+|.+||+||+.+++. |.+|+||||....+|++. ..|++. +. .+
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~-G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~l 89 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEA-GLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDA 89 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHH
Confidence 468999999999999999999999 999999999876555432 222111 00 00
Q ss_pred c------chhHHHHHHHcCCcceecCC--e------------------EEEe-----chHHHHHHHHHHHHhCCCcEEEc
Q 018188 143 V------RKPAQRFLDELGVEYDEQDN--Y------------------VVIK-----HAALFTSTIMSKLLARPNVKLFN 191 (359)
Q Consensus 143 ~------~~~~~~~l~~~G~~~~~~~~--~------------------~~~~-----~~~~~~~~L~~~~~~~~gv~i~~ 191 (359)
+ ....++||+++|++|+.... + .... ....++..|.+.+. +.|+++++
T Consensus 90 v~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~-~~gi~i~~ 168 (598)
T PRK09078 90 IEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSL-KHNAEFFI 168 (598)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHh-hcCCEEEE
Confidence 0 02456899999999875321 1 0111 12356777777765 57999999
Q ss_pred ceeeeeEEEeC-CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 192 AVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 192 ~~~V~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++.+++|+.++ ++|.||.+.+ . .++....|.|+.||+||||++.
T Consensus 169 ~~~v~~Li~~~~g~v~Gv~~~~------~---~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 169 EYFALDLIMDDGGVCRGVVAWN------L---DDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred eEEEEEEEEcCCCEEEEEEEEE------C---CCCcEEEEEcCEEEECCCCCcc
Confidence 99999999875 7899987631 1 1123468999999999999874
No 17
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.56 E-value=5.2e-14 Score=144.64 Aligned_cols=142 Identities=20% Similarity=0.305 Sum_probs=101.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc-cCCcce--------e------------------ehhc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW-LGGQLF--------S------------------AMVV 143 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~-~~g~~~--------~------------------~~~~ 143 (359)
++||||||+|.|||+||+.+++. |++|+||||....+|++. ..|++. + .-++
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQS-GQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 58999999999999999999999 999999999976655432 222211 0 0000
Q ss_pred ------chhHHHHHHHcCCcceecCC--e-----------------EEEe-----chHHHHHHHHHHHHhCCCcEEEcce
Q 018188 144 ------RKPAQRFLDELGVEYDEQDN--Y-----------------VVIK-----HAALFTSTIMSKLLARPNVKLFNAV 193 (359)
Q Consensus 144 ------~~~~~~~l~~~G~~~~~~~~--~-----------------~~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~ 193 (359)
....++||+++|++|+.... + .... ....++..|.+++. +.|+++++++
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gi~i~~~~ 164 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNL-KNHTTIFSEW 164 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhh-hcCCEEEeCc
Confidence 12466999999999975311 1 0111 13456777777665 6799999999
Q ss_pred eeeeEEEe-CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 194 AAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 194 ~V~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.+++|+.+ +++|.||.+.+ . .++....|.|+.||+||||++
T Consensus 165 ~~~~Li~~~~g~v~Gv~~~~------~---~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 165 YALDLVKNQDGAVVGCTAIC------I---ETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred EEEEEEECCCCEEEEEEEEE------c---CCCcEEEEEcCeEEECCCCcc
Confidence 99999985 68999997631 1 122346789999999999987
No 18
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.56 E-value=5.2e-14 Score=138.97 Aligned_cols=141 Identities=27% Similarity=0.384 Sum_probs=94.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceee--------------------------------
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSA-------------------------------- 140 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~-------------------------------- 140 (359)
||||||+|.+|++||+.|+++ |.+|+||||....||++...++.+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~-G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA-GAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDP 79 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT-TT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-H
T ss_pred CEEEECCCHHHHHHHHHHhhh-cCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeeccccccccc
Confidence 899999999999999999999 99999999999877755332211100
Q ss_pred ----hhc--chhHHHHHHHcCCcceecC--------------CeEEEe-----------chHHHHHHHHHHHHhCCCcEE
Q 018188 141 ----MVV--RKPAQRFLDELGVEYDEQD--------------NYVVIK-----------HAALFTSTIMSKLLARPNVKL 189 (359)
Q Consensus 141 ----~~~--~~~~~~~l~~~G~~~~~~~--------------~~~~~~-----------~~~~~~~~L~~~~~~~~gv~i 189 (359)
... ..+..+||+++|++|.... .+.... ....+...|.+.+. +.|++|
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~gv~i 158 (417)
T PF00890_consen 80 DLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAE-EAGVDI 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHH-HTTEEE
T ss_pred chhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHh-hcCeee
Confidence 000 1246689999999887710 101111 23456677766665 678999
Q ss_pred EcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 190 FNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 190 ~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++++++++|+.++++|+||.+... .++...+|+|+.||+|||+++.
T Consensus 159 ~~~~~~~~Li~e~g~V~Gv~~~~~---------~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITEDGRVTGVVAENP---------ADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEETTEEEEEEEEET---------TTCEEEEEEESEEEE----BGG
T ss_pred eccceeeeEEEeCCceeEEEEEEC---------CCCeEEEEeeeEEEeccCcccc
Confidence 999999999999999999988521 1223468999999999998874
No 19
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.55 E-value=8.9e-14 Score=142.86 Aligned_cols=146 Identities=21% Similarity=0.287 Sum_probs=102.9
Q ss_pred CcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCCcccC-Ccce------------------------eehhc
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGAWLG-GQLF------------------------SAMVV 143 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~~~~~-g~~~------------------------~~~~~ 143 (359)
.++||||||+|.|||+||+.+++. +|.+|+||||....+|++... |++. +..++
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v 82 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVV 82 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 358999999999999999999975 258999999998766655332 2211 00000
Q ss_pred ------chhHHHHHHHcCCcceecCC--eE----------EEe-----chHHHHHHHHHHHHhCCCcEEEcceeeeeEEE
Q 018188 144 ------RKPAQRFLDELGVEYDEQDN--YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 200 (359)
Q Consensus 144 ------~~~~~~~l~~~G~~~~~~~~--~~----------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~ 200 (359)
....++||+++|++|+.... +. ... ....+...|++.+.+..+++++.++.+++++.
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~ 162 (582)
T PRK09231 83 EYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILV 162 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEE
Confidence 12466899999999975321 10 111 12456677777776556899999999999998
Q ss_pred eCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 201 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 201 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++++|.|+.+.. .. ++....+.|+.||+|||+++.
T Consensus 163 ~~g~v~Gv~~~~------~~---~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 163 DDGHVRGLVAMN------MM---EGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred eCCEEEEEEEEE------cC---CCcEEEEECCEEEECCCCCcC
Confidence 889999987631 11 123467999999999999874
No 20
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.55 E-value=1.6e-13 Score=137.66 Aligned_cols=141 Identities=18% Similarity=0.254 Sum_probs=99.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccC--CCCCcccCCcce--------------ee--h-----------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVS--PGGGAWLGGQLF--------------SA--M----------- 141 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~--~GG~~~~~g~~~--------------~~--~----------- 141 (359)
++||||||+|++|++||+.|+++ |.+|+||||... .||++...+++. .. +
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~-G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREA-GASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 58999999999999999999999 999999999874 566543222110 00 0
Q ss_pred ----h------cchhHHHHHHHcCCcceecCC--e-------EEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeC
Q 018188 142 ----V------VRKPAQRFLDELGVEYDEQDN--Y-------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG 202 (359)
Q Consensus 142 ----~------~~~~~~~~l~~~G~~~~~~~~--~-------~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~ 202 (359)
+ ......+|+.++|++|..... + ........+...|.+.+. +.|++++++++|++|+.++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~-~~gv~i~~~t~v~~l~~~~ 161 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAE-RLGVEIRYDAPVTALELDD 161 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecC
Confidence 0 012346788889988764311 1 111113456777776664 6799999999999999888
Q ss_pred CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 203 GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 203 ~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++|.+|++.. .++....++|+.||+|||+++
T Consensus 162 g~v~gv~~~~----------~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 162 GRFVGARAGS----------AAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred CeEEEEEEEc----------cCCceEEEECCEEEECCCCCC
Confidence 8898887631 112346789999999999865
No 21
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.55 E-value=1.7e-13 Score=138.76 Aligned_cols=142 Identities=22% Similarity=0.365 Sum_probs=100.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc-CCcce--------------------eeh--------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL-GGQLF--------------------SAM-------- 141 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~-~g~~~--------------------~~~-------- 141 (359)
++||||||+|.+|++||+.++++ |.+|+||||....||++.. .|++. ...
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~-Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDA-GMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 58999999999999999999999 9999999999988875432 22111 000
Q ss_pred ---h------cchhHHHHHHHcCCcceecC---C--eEE---E----echHHHHHHHHHHHHhCCCcEEEcceeeeeEEE
Q 018188 142 ---V------VRKPAQRFLDELGVEYDEQD---N--YVV---I----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 200 (359)
Q Consensus 142 ---~------~~~~~~~~l~~~G~~~~~~~---~--~~~---~----~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~ 200 (359)
+ ......+||+++|++|.... . ... . .....+...|.+.+. +.|++++++++|++|..
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~-~~gv~i~~~t~v~~l~~ 218 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQ-ERKIPLFVNADVTKITE 218 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHH-HcCCeEEeCCeeEEEEe
Confidence 0 01245689999998875321 0 101 0 112356677776664 67999999999999988
Q ss_pred eCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 201 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 201 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++++|.+|.+.. . ++...++.||.||+|+|+++.
T Consensus 219 ~~g~V~Gv~~~~------~----~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 219 KDGKVTGVKVKI------N----GKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred cCCEEEEEEEEe------C----CCeEEEEecCeEEEeCCCccc
Confidence 788899887641 0 112357999999999998763
No 22
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.55 E-value=1.3e-13 Score=141.44 Aligned_cols=145 Identities=23% Similarity=0.279 Sum_probs=104.1
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCCccc-CCccee------------------------eh---
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGAWL-GGQLFS------------------------AM--- 141 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~~~~-~g~~~~------------------------~~--- 141 (359)
++||+|||+|+||++||+.+++. +|++|+||||....++++.. +|++.. .-
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 58999999999999999999875 25899999999877765532 222110 00
Q ss_pred -hc--chhHHHHHHHcCCcceecCC--eE----------EEe-----chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe
Q 018188 142 -VV--RKPAQRFLDELGVEYDEQDN--YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 201 (359)
Q Consensus 142 -~~--~~~~~~~l~~~G~~~~~~~~--~~----------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~ 201 (359)
+. ....++||+++|++|+...+ +. ... ....+.+.|.+++.+..+++++.++.+++|+.+
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 162 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD 162 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence 00 13466899999999976421 10 011 234577888877765578999999999999998
Q ss_pred CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 202 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 202 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+++|.|+...+ . .++....+.|+.||+|||+++.
T Consensus 163 ~g~v~Gv~~~~------~---~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 163 DGRVCGLVAIE------M---AEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred CCEEEEEEEEE------c---CCCcEEEEecCEEEEcCCCCcc
Confidence 89999987631 1 1223467999999999999873
No 23
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.54 E-value=8.2e-14 Score=142.16 Aligned_cols=158 Identities=25% Similarity=0.346 Sum_probs=108.9
Q ss_pred ccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc-cCCcceee------------------------hh
Q 018188 88 TYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW-LGGQLFSA------------------------MV 142 (359)
Q Consensus 88 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~-~~g~~~~~------------------------~~ 142 (359)
.+.++||||||+|.||++||+.++ . |.+|+||||....||++. ..|++... .+
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~-~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~l 83 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLP-S-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEA 83 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhh-c-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHH
Confidence 345689999999999999999985 5 899999999987776553 33322110 00
Q ss_pred c------chhHHHHHHHcCCcceecCC-e----------EEEe-----chHHHHHHHHHHHHhCCCcEEEcceeeeeEEE
Q 018188 143 V------RKPAQRFLDELGVEYDEQDN-Y----------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 200 (359)
Q Consensus 143 ~------~~~~~~~l~~~G~~~~~~~~-~----------~~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~ 200 (359)
+ ..+.++||.++|++|+..+. + .... ....++..|.+.+.++.|+++++++.+++|+.
T Consensus 84 v~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~ 163 (553)
T PRK07395 84 VRFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWL 163 (553)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhhee
Confidence 0 12456899999999975321 0 1111 23457778877776566999999999999988
Q ss_pred eC--CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCC--------Cc--hHHHHHHhcCC
Q 018188 201 KG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPF--------GA--TGVKRLKSIGM 258 (359)
Q Consensus 201 ~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~--------~~--~g~~~~~~~g~ 258 (359)
++ ++|.||.+.. ++....+.|+.||+||||++.. +. .++..+...|.
T Consensus 164 ~~~~g~v~Gv~~~~-----------~g~~~~i~AkaVILATGG~~~~~~~~tn~~~~tGdGi~mA~~aGA 222 (553)
T PRK07395 164 EPETGRCQGISLLY-----------QGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGA 222 (553)
T ss_pred cCCCCEEEEEEEEE-----------CCeEEEEEcCEEEEcCCCCccccCCccCccchhhHHHHHHHHcCC
Confidence 63 7899987631 1123568999999999997421 22 45666665554
No 24
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.54 E-value=1.1e-13 Score=142.24 Aligned_cols=144 Identities=24% Similarity=0.304 Sum_probs=100.7
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCCcc-cCCcce---------ee-------------hh----
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGAW-LGGQLF---------SA-------------MV---- 142 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~~~-~~g~~~---------~~-------------~~---- 142 (359)
++||||||+|.||++||+.|++. +|.+|+||||....||++. .+|++. +. ..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 58999999999999999999976 2589999999876665432 222210 00 00
Q ss_pred -c------chhHHHHHHHcCCcceecCCe--E----------EEe-----chHHHHHHHHHHHHhCCCcEEEcceeeeeE
Q 018188 143 -V------RKPAQRFLDELGVEYDEQDNY--V----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDL 198 (359)
Q Consensus 143 -~------~~~~~~~l~~~G~~~~~~~~~--~----------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l 198 (359)
+ ....++||+++|++|+..... . ... ....+...|.+.+. +.|+++++++.|++|
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~-~~gi~i~~~t~v~~L 161 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLR-RYGVTIYDEWYVMRL 161 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHh-hCCCEEEeCcEEEEE
Confidence 0 023558899999999764221 1 111 23457777877775 679999999999999
Q ss_pred EEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 199 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 199 ~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
..++++|.|+.... .. +++...+.|+.||+|||+++.
T Consensus 162 ~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 162 ILEDNQAKGVVMYH------IA---DGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred EEECCEEEEEEEEE------cC---CCeEEEEECCEEEECCCCCcC
Confidence 98888999887521 01 122357899999999999863
No 25
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.54 E-value=1e-13 Score=143.76 Aligned_cols=143 Identities=22% Similarity=0.221 Sum_probs=97.9
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC-Cc-ccCCcce---------e------------------e
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG-GA-WLGGQLF---------S------------------A 140 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG-~~-~~~g~~~---------~------------------~ 140 (359)
.++||||||+|.|||+||+.+++. |++|+||||...+++ ++ +..|++. + .
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~-G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~ 112 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGEL-GYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRARE 112 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCH
Confidence 468999999999999999999999 999999999776642 22 2222211 0 0
Q ss_pred h----hc--chhHHHHHHHcCCcceecCCe------------EEEe-----chHHHH----HHHHHHHHhCCCcEEEcce
Q 018188 141 M----VV--RKPAQRFLDELGVEYDEQDNY------------VVIK-----HAALFT----STIMSKLLARPNVKLFNAV 193 (359)
Q Consensus 141 ~----~~--~~~~~~~l~~~G~~~~~~~~~------------~~~~-----~~~~~~----~~L~~~~~~~~gv~i~~~~ 193 (359)
. +. ....++||+++|++|+..... .... ....+. +.|.+.+ ++.|+++++++
T Consensus 113 ~lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~-~~~gV~i~~~t 191 (640)
T PRK07573 113 ANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQI-AAGTVKMYTRT 191 (640)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHH-HhcCCEEEece
Confidence 0 00 124669999999999743210 0011 112232 3344344 46899999999
Q ss_pred eeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 194 AAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 194 ~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.+++|+.++++|.||.+.+ .. ++....|.||.||+||||++
T Consensus 192 ~v~~Li~d~g~V~GV~~~~------~~---~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 192 EMLDLVVVDGRARGIVARN------LV---TGEIERHTADAVVLATGGYG 232 (640)
T ss_pred EEEEEEEeCCEEEEEEEEE------CC---CCcEEEEECCEEEECCCCcc
Confidence 9999998889999998742 11 12345799999999999977
No 26
>PLN02815 L-aspartate oxidase
Probab=99.54 E-value=7.9e-14 Score=143.06 Aligned_cols=144 Identities=21% Similarity=0.271 Sum_probs=101.8
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc-cCCccee------------------------ehhc-
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW-LGGQLFS------------------------AMVV- 143 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~-~~g~~~~------------------------~~~~- 143 (359)
.++||||||+|.|||+||+.+++. | +|+||||....||++. .+|++.. ..++
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~-G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 105 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEY-G-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR 105 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhC-C-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence 358999999999999999999999 8 9999999988777543 2332210 0000
Q ss_pred -----chhHHHHHHHcCCcceecCC--eE----------EEe-----chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe
Q 018188 144 -----RKPAQRFLDELGVEYDEQDN--YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 201 (359)
Q Consensus 144 -----~~~~~~~l~~~G~~~~~~~~--~~----------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~ 201 (359)
....++||+++|++|+.... +. ... ....++..|.+.+.+..|+++++++.+++|+.+
T Consensus 106 ~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~ 185 (594)
T PLN02815 106 VVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTS 185 (594)
T ss_pred HHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeee
Confidence 12456899999999975321 10 111 234567788887765669999999999999985
Q ss_pred C-C---EEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 202 G-G---RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 202 ~-~---~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+ + +|.|+.+.+ .. ++....|.||.||+||||++.
T Consensus 186 ~~g~~~~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 186 QDGGSIVCHGADVLD------TR---TGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred cCCCccEEEEEEEEE------cC---CCeEEEEEeceEEEcCCccee
Confidence 3 3 388887631 11 123467899999999999873
No 27
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.54 E-value=1.6e-13 Score=142.06 Aligned_cols=159 Identities=25% Similarity=0.363 Sum_probs=107.9
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc-cCCcce---------e------------------e-
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW-LGGQLF---------S------------------A- 140 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~-~~g~~~---------~------------------~- 140 (359)
.++||||||+|.||++||+.+++. |++|+||||....+|++. .+|++. + .
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~-G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~ 85 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARER-GLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWR 85 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHC-CCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHH
Confidence 458999999999999999999999 999999999976654332 222110 0 0
Q ss_pred ---hhc--chhHHHHHHHcCCcceecCC------------eEEEec-----hHHHHHHHHHHHHhCC-------C-----
Q 018188 141 ---MVV--RKPAQRFLDELGVEYDEQDN------------YVVIKH-----AALFTSTIMSKLLARP-------N----- 186 (359)
Q Consensus 141 ---~~~--~~~~~~~l~~~G~~~~~~~~------------~~~~~~-----~~~~~~~L~~~~~~~~-------g----- 186 (359)
.++ ....++||+++|++|+...+ ++...+ ...++..|.+.+.+.. |
T Consensus 86 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~ 165 (626)
T PRK07803 86 MAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEAR 165 (626)
T ss_pred HHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCc
Confidence 000 12455889999999975321 111212 3456677776665331 5
Q ss_pred cEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCC--------C--chHHHHHHhc
Q 018188 187 VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPF--------G--ATGVKRLKSI 256 (359)
Q Consensus 187 v~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~--------~--~~g~~~~~~~ 256 (359)
+++++++.|++++.++++|.|+.... . .++....|.|+.||+|||+++.. + ..|+..+...
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~------~---~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~a 236 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYW------R---ESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRA 236 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEE------C---CCCeEEEEEcCeEEECCCcccCCCCCcCCCCCcCcHHHHHHHHc
Confidence 99999999999998888899886531 1 11234579999999999996521 1 1466666666
Q ss_pred CC
Q 018188 257 GM 258 (359)
Q Consensus 257 g~ 258 (359)
|.
T Consensus 237 Ga 238 (626)
T PRK07803 237 GA 238 (626)
T ss_pred CC
Confidence 65
No 28
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.54 E-value=1.4e-13 Score=138.91 Aligned_cols=141 Identities=28% Similarity=0.452 Sum_probs=101.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc-cCCccee------------------------ehhc--
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW-LGGQLFS------------------------AMVV-- 143 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~-~~g~~~~------------------------~~~~-- 143 (359)
++||||||+|.||++||+.+++. |. |+||||....+|++. ..|++.. ...+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~-G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~ 79 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQ-GR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEF 79 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhC-CC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHH
Confidence 47999999999999999999998 87 999999977666553 2232210 0000
Q ss_pred ----chhHHHHHHHcCCcceecCC--e----------EEEe-----chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeC
Q 018188 144 ----RKPAQRFLDELGVEYDEQDN--Y----------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG 202 (359)
Q Consensus 144 ----~~~~~~~l~~~G~~~~~~~~--~----------~~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~ 202 (359)
..+.++||+++|++|+.... + .... ....+...|.+.+.+..|+++++++.|++|+.++
T Consensus 80 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~ 159 (488)
T TIGR00551 80 VVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET 159 (488)
T ss_pred HHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC
Confidence 12466899999999875321 1 1111 2346778887777644799999999999998888
Q ss_pred CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 203 GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 203 ~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+++.|+.+.. . +....+.|+.||+|||+++.
T Consensus 160 g~v~Gv~~~~------~-----~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 160 GRVVGVWVWN------R-----ETVETCHADAVVLATGGAGK 190 (488)
T ss_pred CEEEEEEEEE------C-----CcEEEEEcCEEEECCCcccC
Confidence 8898887642 0 12357899999999999874
No 29
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.54 E-value=1.3e-13 Score=140.96 Aligned_cols=150 Identities=27% Similarity=0.347 Sum_probs=100.6
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc--CCCCCccc-CCcce----------------------------
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV--SPGGGAWL-GGQLF---------------------------- 138 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~--~~GG~~~~-~g~~~---------------------------- 138 (359)
.++||||||+|.+||+||+.+++. |++|+||||.. ..||.+.. +|.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~ 81 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA-GKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAG 81 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccC
Confidence 358999999999999999999999 99999999998 66775532 22110
Q ss_pred ---ee----------hhc--chhHHHHHHHcCCcceecC---------------CeEEE----echHHHHHHHHHHHH--
Q 018188 139 ---SA----------MVV--RKPAQRFLDELGVEYDEQD---------------NYVVI----KHAALFTSTIMSKLL-- 182 (359)
Q Consensus 139 ---~~----------~~~--~~~~~~~l~~~G~~~~~~~---------------~~~~~----~~~~~~~~~L~~~~~-- 182 (359)
+. ++. ..+..+||+++|++|.... .+... .....++..|.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~~~~~~~ 161 (549)
T PRK12834 82 FDRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFERRVREA 161 (549)
T ss_pred CCCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHHHHHHHH
Confidence 00 001 2466799999999886421 01110 012345566655543
Q ss_pred -hCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCC-------C-CCCCCeEEEcCEEEEcCCCCCC
Q 018188 183 -ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT-------Q-SCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 183 -~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~-------~-~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+..|+++++++++++|+.++++|+||++... ..+. . ..+...+|.||.||+|||+++.
T Consensus 162 ~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~----~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~ 228 (549)
T PRK12834 162 AARGLVRFRFRHRVDELVVTDGAVTGVRGTVL----EPSDAERGEASSREVVGEFELRAQAVIVTSGGIGG 228 (549)
T ss_pred HHhCCceEEecCEeeEEEEeCCEEEEEEEEec----ccccccccccccccccceEEEecCEEEEeCCCccc
Confidence 2446999999999999998899999986310 0000 0 0012357899999999999874
No 30
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.53 E-value=2.2e-13 Score=140.57 Aligned_cols=145 Identities=23% Similarity=0.337 Sum_probs=100.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCCcccCCc-ceee-------------------------hh
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGAWLGGQ-LFSA-------------------------MV 142 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~~~~~g~-~~~~-------------------------~~ 142 (359)
.++||||||+|.||++||+.+++. +|.+|+||||....+++++.+|. .+.. .+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 458999999999999999999885 48999999998765544433221 0100 00
Q ss_pred c------chhHHHHHHHcCCcceecCCeEE--------EechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEE
Q 018188 143 V------RKPAQRFLDELGVEYDEQDNYVV--------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGV 208 (359)
Q Consensus 143 ~------~~~~~~~l~~~G~~~~~~~~~~~--------~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv 208 (359)
+ ....++||+++|++|+......+ ......+.+.|.+.+.+..|+++++++.|+++..++++|.||
T Consensus 90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv 169 (608)
T PRK06854 90 VYDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGA 169 (608)
T ss_pred HHHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 0 02456899999999875421111 113345667776666544459999999999998888889888
Q ss_pred EEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 209 VTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 209 ~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.... .. ++....+.|+.||+|||+++
T Consensus 170 ~~~~------~~---~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 170 VGFS------VR---ENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred EEEE------cc---CCcEEEEECCEEEECCCchh
Confidence 6521 01 11235799999999999876
No 31
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.52 E-value=2.8e-13 Score=138.11 Aligned_cols=160 Identities=26% Similarity=0.347 Sum_probs=108.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc-CCccee------------------------ehhc--
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL-GGQLFS------------------------AMVV-- 143 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~-~g~~~~------------------------~~~~-- 143 (359)
++||||||+|.||++||+.+++. |.+|+||||....+|++.. .|++.. ...+
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~-G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRA-GRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHc-CCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 58999999999999999999999 9999999999877654432 222110 0000
Q ss_pred ----chhHHHHHHHcCCcceecCC--eE----------EEe------chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe
Q 018188 144 ----RKPAQRFLDELGVEYDEQDN--YV----------VIK------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 201 (359)
Q Consensus 144 ----~~~~~~~l~~~G~~~~~~~~--~~----------~~~------~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~ 201 (359)
....++||.++|++|+.... +. ... ....+.+.|.+.+. +.++++++++.|++++.+
T Consensus 95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~-~~gV~i~~~~~v~~Li~~ 173 (541)
T PRK07804 95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVR-ADPLDIREHALALDLLTD 173 (541)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHH-hCCCEEEECeEeeeeEEc
Confidence 12456899999999975321 11 111 23456677777664 678999999999999887
Q ss_pred C-CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCC--------Cc--hHHHHHHhcCC
Q 018188 202 G-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPF--------GA--TGVKRLKSIGM 258 (359)
Q Consensus 202 ~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~--------~~--~g~~~~~~~g~ 258 (359)
+ ++|.|+.+.+ ...+..+....+.|+.||+|||+++.. +. .++..+...|.
T Consensus 174 ~~g~v~Gv~~~~------~~~~~~~g~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa 235 (541)
T PRK07804 174 GTGAVAGVTLHV------LGEGSPDGVGAVHAPAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGA 235 (541)
T ss_pred CCCeEEEEEEEe------ccCCCCCcEEEEEcCeEEECCCCCCCCCCCccCCCCcchHHHHHHHHcCC
Confidence 5 6899987631 000000112578999999999998732 22 46666766665
No 32
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.52 E-value=3.1e-13 Score=138.04 Aligned_cols=157 Identities=22% Similarity=0.277 Sum_probs=106.4
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccC-CCCCc-ccCCcceee------------------------hhc
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVS-PGGGA-WLGGQLFSA------------------------MVV 143 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~-~GG~~-~~~g~~~~~------------------------~~~ 143 (359)
.++||||||+|.||++||+.+ +. |++|+||||... .||.+ +..|++... -++
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~-G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv 83 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ER-GKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV 83 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hc-CCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence 458999999999999999999 88 999999999864 44433 222222100 000
Q ss_pred ------chhHHHHHHHcCCcceecCC--e----------EEEe-----chHHHHHHHHHHHHhCCCcEEEcceeeeeEEE
Q 018188 144 ------RKPAQRFLDELGVEYDEQDN--Y----------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 200 (359)
Q Consensus 144 ------~~~~~~~l~~~G~~~~~~~~--~----------~~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~ 200 (359)
.....+||+++|++|+.... + +... ....+...|.+.+. +.|+++++++.+++|+.
T Consensus 84 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~t~v~~Li~ 162 (543)
T PRK06263 84 EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLI-KERIKILEEVMAIKLIV 162 (543)
T ss_pred HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHh-cCCCEEEeCeEeeeeEE
Confidence 12356899999999975321 1 1111 23456777777665 58999999999999998
Q ss_pred eCCE-EEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCC--------C--chHHHHHHhcCC
Q 018188 201 KGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPF--------G--ATGVKRLKSIGM 258 (359)
Q Consensus 201 ~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~--------~--~~g~~~~~~~g~ 258 (359)
++++ |.|+.... .. ++....|.|+.||+|||+++.. + .+|+..+...|.
T Consensus 163 ~~~~~v~Gv~~~~------~~---~g~~~~i~AkaVIlATGG~~~~~~~~~~~~~~tGdG~~ma~~aGa 222 (543)
T PRK06263 163 DENREVIGAIFLD------LR---NGEIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGA 222 (543)
T ss_pred eCCcEEEEEEEEE------CC---CCcEEEEEcCcEEECCCCCCCCCCCCCCCCCCCcHHHHHHHHcCC
Confidence 7664 88887631 01 1234679999999999998631 1 146666666664
No 33
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.51 E-value=3.8e-13 Score=138.12 Aligned_cols=140 Identities=29% Similarity=0.350 Sum_probs=98.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc-cCCccee---------e-------------hhc------
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW-LGGQLFS---------A-------------MVV------ 143 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~-~~g~~~~---------~-------------~~~------ 143 (359)
||||||+|++|++||+.|++. |.+|+||||....+|++. ..|++.. . ...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~-G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~ 79 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKA-GLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVE 79 (566)
T ss_pred CEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHH
Confidence 899999999999999999999 999999999886655432 2221110 0 000
Q ss_pred -----chhHHHHHHHcCCcceecCC--eE----------EEe-----chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe
Q 018188 144 -----RKPAQRFLDELGVEYDEQDN--YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 201 (359)
Q Consensus 144 -----~~~~~~~l~~~G~~~~~~~~--~~----------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~ 201 (359)
.....+||+++|++|+.... +. ... ....+...|.+.+. +.|+++++++.+++|+.+
T Consensus 80 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~v~~L~~~ 158 (566)
T TIGR01812 80 YMCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCL-KLGVSFFNEYFALDLIHD 158 (566)
T ss_pred HHHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHH-HcCCEEEeccEEEEEEEe
Confidence 12456899999999875321 10 110 12356677777665 569999999999999988
Q ss_pred CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 202 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 202 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+++|.|+.+.. . .++....+.|+.||+|||+++
T Consensus 159 ~g~v~Gv~~~~------~---~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 159 DGRVRGVVAYD------L---KTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred CCEEEEEEEEE------C---CCCcEEEEECCeEEECCCccc
Confidence 89999987631 0 112235799999999999986
No 34
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.51 E-value=3.7e-13 Score=138.54 Aligned_cols=144 Identities=20% Similarity=0.312 Sum_probs=100.2
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc-CCcce--------ee-------------hh-----
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL-GGQLF--------SA-------------MV----- 142 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~-~g~~~--------~~-------------~~----- 142 (359)
.++||||||+|.|||+||+.+++. |.+|+||||....+|++.. .|++. +. ..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~ 89 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARA-GLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDA 89 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHH
Confidence 468999999999999999999999 9999999998665544322 12110 00 00
Q ss_pred c------chhHHHHHHHcCCcceecCC--eE-----------------EEe-----chHHHHHHHHHHHHhCCCcEEEcc
Q 018188 143 V------RKPAQRFLDELGVEYDEQDN--YV-----------------VIK-----HAALFTSTIMSKLLARPNVKLFNA 192 (359)
Q Consensus 143 ~------~~~~~~~l~~~G~~~~~~~~--~~-----------------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~ 192 (359)
+ ....++||.++|++|+.... +. ... ....+...|.+.+. +.|++++.+
T Consensus 90 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~-~~gi~i~~~ 168 (591)
T PRK07057 90 IEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNV-AAKTQFFVE 168 (591)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHH-hcCCEEEeC
Confidence 0 02356888999999975321 11 000 12356777777665 689999999
Q ss_pred eeeeeEEEe-CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 193 VAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 193 ~~V~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+.+++++.+ +++|.||.+.+ .. ++....+.||.||+|||+++.
T Consensus 169 ~~~~~Li~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 169 WMALDLIRDADGDVLGVTALE------ME---TGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred cEEEEEEEcCCCeEEEEEEEE------cC---CCeEEEEECCeEEECCCCccc
Confidence 999999986 57899987631 11 122357899999999999874
No 35
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.51 E-value=3.4e-13 Score=137.40 Aligned_cols=144 Identities=25% Similarity=0.395 Sum_probs=101.6
Q ss_pred cCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc-ccCCcceee------------------------hhc
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA-WLGGQLFSA------------------------MVV 143 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~-~~~g~~~~~------------------------~~~ 143 (359)
..++||||||+|.||++||+.|++. .+|+||||....||++ +.+|++... -++
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~--~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v 83 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH--RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAV 83 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC--CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHH
Confidence 4468999999999999999999874 7999999998777654 333332110 000
Q ss_pred ------chhHHHHHHHcCCcceecC------CeE----------EEe-----chHHHHHHHHHHHHhCCCcEEEcceeee
Q 018188 144 ------RKPAQRFLDELGVEYDEQD------NYV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAE 196 (359)
Q Consensus 144 ------~~~~~~~l~~~G~~~~~~~------~~~----------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~~V~ 196 (359)
....++||+++|++|+... .|. ... ....+...|.+++.+..|+++++++.++
T Consensus 84 ~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~ 163 (536)
T PRK09077 84 RFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAI 163 (536)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEee
Confidence 0245689999999997532 111 111 1235667777777656799999999999
Q ss_pred eEEEeC------CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 197 DLIVKG------GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 197 ~l~~~~------~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+++.++ ++|.||...+ .. ++....|.|+.||+|||+++
T Consensus 164 ~Li~~~~~~~~~g~v~Gv~~~~------~~---~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 164 DLITSDKLGLPGRRVVGAYVLN------RN---KERVETIRAKFVVLATGGAS 207 (536)
T ss_pred eeeecccccCCCCEEEEEEEEE------CC---CCcEEEEecCeEEECCCCCC
Confidence 998754 7899987632 11 12346799999999999987
No 36
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.50 E-value=2.4e-13 Score=137.78 Aligned_cols=157 Identities=26% Similarity=0.408 Sum_probs=107.7
Q ss_pred ccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccC-CCCCc-ccCCcceee------------------------h
Q 018188 88 TYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVS-PGGGA-WLGGQLFSA------------------------M 141 (359)
Q Consensus 88 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~-~GG~~-~~~g~~~~~------------------------~ 141 (359)
.+.++||||||+|.||++||+.++ +.+|+||||... .||++ +.+|++... -
T Consensus 6 ~~~~~DVlVIG~G~AGl~AAl~Aa---~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~ 82 (513)
T PRK07512 6 RILTGRPVIVGGGLAGLMAALKLA---PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPA 82 (513)
T ss_pred cCCcCCEEEECchHHHHHHHHHhC---cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHH
Confidence 345699999999999999999986 569999999986 34433 333332110 0
Q ss_pred hc------chhHHHHHHHcCCcceecCC--eE----------EEe------chHHHHHHHHHHHHhCCCcEEEcceeeee
Q 018188 142 VV------RKPAQRFLDELGVEYDEQDN--YV----------VIK------HAALFTSTIMSKLLARPNVKLFNAVAAED 197 (359)
Q Consensus 142 ~~------~~~~~~~l~~~G~~~~~~~~--~~----------~~~------~~~~~~~~L~~~~~~~~gv~i~~~~~V~~ 197 (359)
++ ..+.++||+++|++|+.... +. ... ....+...|.+.+.+..|+++++++.+++
T Consensus 83 ~v~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~ 162 (513)
T PRK07512 83 VAALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARR 162 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhh
Confidence 00 12456899999999975321 11 111 13457778877776456999999999999
Q ss_pred EEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC--------CCc--hHHHHHHhcCC
Q 018188 198 LIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP--------FGA--TGVKRLKSIGM 258 (359)
Q Consensus 198 l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~--------~~~--~g~~~~~~~g~ 258 (359)
|..++++|.|+.+.+ . +....+.||.||+||||++. .+. .|+..+...|.
T Consensus 163 Li~~~g~v~Gv~~~~------~-----~~~~~i~Ak~VVLATGG~~~~~~~~~~~~~~tGDGi~mA~~aGA 222 (513)
T PRK07512 163 LLVDDGAVAGVLAAT------A-----GGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGA 222 (513)
T ss_pred eeecCCEEEEEEEEe------C-----CeEEEEECCEEEEcCCCCcCCCCCCCCCCCCchHHHHHHHHcCC
Confidence 988788999987641 0 11246899999999999762 122 46666666665
No 37
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.50 E-value=6e-13 Score=136.92 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=99.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccC-Ccceee-----------------------------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLG-GQLFSA----------------------------- 140 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~-g~~~~~----------------------------- 140 (359)
.+||||||+|.||++||+.+++. |++|+||||....+|++... |++...
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 81 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEA-GVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPP 81 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHc-CCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHH
Confidence 36999999999999999999999 99999999998766554332 222100
Q ss_pred --hhc--chhHHHHHHHcCCcceecCC--eE----------EEe-----chHHHHHHHHHHHHhC---CCcEEEcceeee
Q 018188 141 --MVV--RKPAQRFLDELGVEYDEQDN--YV----------VIK-----HAALFTSTIMSKLLAR---PNVKLFNAVAAE 196 (359)
Q Consensus 141 --~~~--~~~~~~~l~~~G~~~~~~~~--~~----------~~~-----~~~~~~~~L~~~~~~~---~gv~i~~~~~V~ 196 (359)
.++ .+..++||+++|++|+...+ +. ... ....+...|.+.+.+. .+++++.++.++
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~ 161 (589)
T PRK08641 82 VKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFL 161 (589)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEE
Confidence 000 12456899999999975321 10 111 1334666666555432 238999999999
Q ss_pred eEEEe-CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 197 DLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 197 ~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+++.+ +++|.||.+.+ .. .+....+.|+.||+||||++.
T Consensus 162 ~Li~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 162 GAVLDDEGVCRGIVAQD------LF---TMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred EEEECCCCEEEEEEEEE------CC---CCcEEEEECCEEEECCCCCcC
Confidence 99985 68999998742 11 112357899999999999874
No 38
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.49 E-value=3.1e-13 Score=140.46 Aligned_cols=144 Identities=21% Similarity=0.214 Sum_probs=100.0
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc-CCcce-----------e------------------
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL-GGQLF-----------S------------------ 139 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~-~g~~~-----------~------------------ 139 (359)
.++||||||+|.+||.||+.+++. |++|+||||....++++.. .|++. +
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~-G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D 82 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQR-GLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCD 82 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHc-CCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCC
Confidence 458999999999999999999999 9999999998776544321 11110 0
Q ss_pred e----hhc--chhHHHHHHHcCCcceecCCe---------------------------------EEE-----echHHHHH
Q 018188 140 A----MVV--RKPAQRFLDELGVEYDEQDNY---------------------------------VVI-----KHAALFTS 175 (359)
Q Consensus 140 ~----~~~--~~~~~~~l~~~G~~~~~~~~~---------------------------------~~~-----~~~~~~~~ 175 (359)
. .+. .+..++||.++|++|+..... ... .....+..
T Consensus 83 ~~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~~ 162 (657)
T PRK08626 83 QEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTMLY 162 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHHH
Confidence 0 000 134668999999988653110 000 01223455
Q ss_pred HHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 176 TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 176 ~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
.|.+.+. +.|+++++++.+++|+.++++|.|+.+.+ . .++....|.|+.||+||||++.
T Consensus 163 ~L~~~~~-~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~------~---~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 163 AVDNEAI-KLGVPVHDRKEAIALIHDGKRCYGAVVRC------L---ITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred HHHHHHH-hCCCEEEeeEEEEEEEEECCEEEEEEEEE------c---CCCcEEEEEcCeEEECCCcccC
Confidence 6666554 68999999999999998888999987742 1 1223467899999999999874
No 39
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.48 E-value=6.1e-13 Score=132.01 Aligned_cols=135 Identities=26% Similarity=0.406 Sum_probs=89.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCC--------------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGV-------------- 156 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~-------------- 156 (359)
+|||+||||||+|++||+.|+++ |++|+||||...+|.....+|.++.... ..-..++.....+
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~~g~k~~~gg~l~~~~~-e~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNSAGAKNVTGGRLYAHSL-EHIIPGFADSAPVERLITHEKLAFMTE 82 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCCCCCcccccceechhhH-HHHhhhhhhcCcccceeeeeeEEEEcC
Confidence 49999999999999999999999 9999999999888765444443322111 0000011110000
Q ss_pred ------cceec-----CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCC
Q 018188 157 ------EYDEQ-----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM 225 (359)
Q Consensus 157 ------~~~~~-----~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g 225 (359)
.+... ....+......+.+.|.+.+. +.|++++.+++|+++..+++++.++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~-~~Gv~i~~~~~V~~i~~~~g~v~~v~~~-------------- 147 (428)
T PRK10157 83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAE-EAGAQLITGIRVDNLVQRDGKVVGVEAD-------------- 147 (428)
T ss_pred CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHH-HCCCEEECCCEEEEEEEeCCEEEEEEcC--------------
Confidence 00000 001122344566677777765 6899999999999998877777655431
Q ss_pred CCeEEEcCEEEEcCCCCC
Q 018188 226 DPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 226 ~~~~i~A~~VIlAtGg~s 243 (359)
..+++|+.||+|+|..+
T Consensus 148 -g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 148 -GDVIEAKTVILADGVNS 164 (428)
T ss_pred -CcEEECCEEEEEeCCCH
Confidence 35799999999999655
No 40
>PRK06185 hypothetical protein; Provisional
Probab=99.48 E-value=1.3e-12 Score=128.49 Aligned_cols=137 Identities=25% Similarity=0.354 Sum_probs=91.9
Q ss_pred cCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc----------c
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE----------Y 158 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~----------~ 158 (359)
..++||+|||||++|+++|+.|++. |++|+|||+.+.... . .....+.....++|+++|+. +
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~-G~~v~liE~~~~~~~--~-----~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~ 75 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARA-GVDVTVLEKHADFLR--D-----FRGDTVHPSTLELMDELGLLERFLELPHQKV 75 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCccCc--c-----ccCceeChhHHHHHHHcCChhHHhhccccee
Confidence 3469999999999999999999999 999999999864311 0 01112233344555555541 0
Q ss_pred e-----ecC---------------CeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeecc
Q 018188 159 D-----EQD---------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 218 (359)
Q Consensus 159 ~-----~~~---------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~ 218 (359)
. ..+ .+........+.+.|.+.+.+..|++++++++|+++..+++++.+|.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~------ 149 (407)
T PRK06185 76 RTLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRART------ 149 (407)
T ss_pred eeEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEc------
Confidence 0 000 01112334556677777776557999999999999998888887766531
Q ss_pred CCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 219 HDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 219 ~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
.+ ...+++|+.||.|+|.++.
T Consensus 150 -~~----g~~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 150 -PD----GPGEIRADLVVGADGRHSR 170 (407)
T ss_pred -CC----CcEEEEeCEEEECCCCchH
Confidence 00 1257999999999997763
No 41
>PRK08275 putative oxidoreductase; Provisional
Probab=99.47 E-value=8e-13 Score=135.27 Aligned_cols=145 Identities=26% Similarity=0.434 Sum_probs=100.0
Q ss_pred CcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCCcc-c-CCcce-------------------------eeh
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGAW-L-GGQLF-------------------------SAM 141 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~~~-~-~g~~~-------------------------~~~ 141 (359)
.++||||||+|.||++||+.+++. +|.+|+||||....+++.. . .+++. +.-
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 458999999999999999999875 2689999999986433332 1 11110 000
Q ss_pred h----c--chhHHHHHHHcCCcceecC--CeEE--E----------echHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe
Q 018188 142 V----V--RKPAQRFLDELGVEYDEQD--NYVV--I----------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 201 (359)
Q Consensus 142 ~----~--~~~~~~~l~~~G~~~~~~~--~~~~--~----------~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~ 201 (359)
. . ..+.++||+++|++|+... .+.. . .....+.+.|.+.+. +.|+++++++.|++|+.+
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~v~~Li~~ 166 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLK-RARVLITNRIMATRLLTD 166 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHH-HCCCEEEcceEEEEEEEc
Confidence 0 0 1346689999999997542 1211 0 023356777777775 689999999999999987
Q ss_pred -CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 202 -GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 202 -~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++++.|+.+.+ .. ++....+.|+.||+|||+.+.
T Consensus 167 ~~g~v~Gv~~~~------~~---~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 167 ADGRVAGALGFD------CR---TGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred CCCeEEEEEEEe------cC---CCcEEEEECCEEEECCCCccc
Confidence 67899887531 11 123357899999999999864
No 42
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.47 E-value=4.9e-13 Score=131.41 Aligned_cols=138 Identities=22% Similarity=0.315 Sum_probs=92.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehh---cchhHHHHHHHc--------CCcce
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV---VRKPAQRFLDEL--------GVEYD 159 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~---~~~~~~~~l~~~--------G~~~~ 159 (359)
+|||+||||||||++||+.|++. |++|+|+||+..+|.....++.+....+ ......+..... +..+.
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 59999999999999999999999 9999999999999876555333222111 000000000000 00000
Q ss_pred ec--CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEE
Q 018188 160 EQ--DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVS 237 (359)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIl 237 (359)
.. ....+..+...|.+.|.+++. +.|++++.++++.++..+++.+..+... ...+++||+||+
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~-~aGae~~~~~~~~~~~~~~~~~~~~~~~--------------~~~e~~a~~vI~ 146 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAE-EAGAELYPGTRVTGVIREDDGVVVGVRA--------------GDDEVRAKVVID 146 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHH-HcCCEEEeceEEEEEEEeCCcEEEEEEc--------------CCEEEEcCEEEE
Confidence 00 011334456677787777775 7899999999999999988665544442 126899999999
Q ss_pred cCCCCCC
Q 018188 238 SCGHDGP 244 (359)
Q Consensus 238 AtGg~s~ 244 (359)
|+|..+.
T Consensus 147 AdG~~s~ 153 (396)
T COG0644 147 ADGVNSA 153 (396)
T ss_pred CCCcchH
Confidence 9997764
No 43
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.47 E-value=8.5e-13 Score=145.07 Aligned_cols=150 Identities=20% Similarity=0.198 Sum_probs=102.0
Q ss_pred cccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc-CCccee--------------------eh----
Q 018188 87 VTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL-GGQLFS--------------------AM---- 141 (359)
Q Consensus 87 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~-~g~~~~--------------------~~---- 141 (359)
..+.++||||||+|.+|++||+.+++. |.+|+||||....||++.. +|+++. ..
T Consensus 405 ~~t~~~DVvVVG~G~AGl~AAi~Aae~-Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~ 483 (1167)
T PTZ00306 405 AGSLPARVIVVGGGLAGCSAAIEAASC-GAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSG 483 (1167)
T ss_pred ccCCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhc
Confidence 345679999999999999999999999 9999999999888876532 221100 00
Q ss_pred ---hc-----------chhHHHHHHHcCCcceecC-----CeEEEe------------chHHHHHHHHHHHHh--CCCcE
Q 018188 142 ---VV-----------RKPAQRFLDELGVEYDEQD-----NYVVIK------------HAALFTSTIMSKLLA--RPNVK 188 (359)
Q Consensus 142 ---~~-----------~~~~~~~l~~~G~~~~~~~-----~~~~~~------------~~~~~~~~L~~~~~~--~~gv~ 188 (359)
.. ..+.++||+++|++|.... .+.... ....++..|.+.+.+ +.|++
T Consensus 484 ~~~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~ 563 (1167)
T PTZ00306 484 KGGHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVT 563 (1167)
T ss_pred cCCCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcE
Confidence 00 1245689999999886410 010000 123345565555442 25999
Q ss_pred EEcceeeeeEEEeC---------CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 189 LFNAVAAEDLIVKG---------GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 189 i~~~~~V~~l~~~~---------~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
|++++++++|+.++ ++|+||.+.+ . ...++....|.||.||+||||++.
T Consensus 564 i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~------~-~~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 564 IMTETTVTSLLSESSARPDGVREIRVTGVRYKQ------A-SDASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred EEECCEEEEEEecCCcccCCCccceEEEEEEEe------c-ccCCCcEEEEEeceEEEecCCccc
Confidence 99999999999863 2799998752 1 001234568999999999999874
No 44
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.46 E-value=1.4e-12 Score=132.37 Aligned_cols=140 Identities=24% Similarity=0.385 Sum_probs=96.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc-CC-ccee-----------------------------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL-GG-QLFS----------------------------- 139 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~-~g-~~~~----------------------------- 139 (359)
++||||||+| +|++||+++++. |.+|+||||....||++.. +| .++.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~-G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 84 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAARE-GLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAVVGDR 84 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHC-CCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHHhccc
Confidence 5899999999 999999999999 9999999999887776532 22 1110
Q ss_pred --ehhc------chhHHHHHHH-cCCcceecC--------------C-eEEEe---------------------------
Q 018188 140 --AMVV------RKPAQRFLDE-LGVEYDEQD--------------N-YVVIK--------------------------- 168 (359)
Q Consensus 140 --~~~~------~~~~~~~l~~-~G~~~~~~~--------------~-~~~~~--------------------------- 168 (359)
..+. ....++||++ +|+.|.... . .....
T Consensus 85 ~~~~l~~~~~~~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (513)
T PRK12837 85 TPRDLQETYVRGGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTERLGAP 164 (513)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchhhhccC
Confidence 0000 0134578876 587774310 0 00000
Q ss_pred ------chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcC-EEEEcCCC
Q 018188 169 ------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK-IVVSSCGH 241 (359)
Q Consensus 169 ------~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~-~VIlAtGg 241 (359)
....+...+++.+.++.|++++++++|++|+.++++|.||++.. ++...++.|+ .||+|||+
T Consensus 165 ~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~-----------~g~~~~i~A~k~VIlAtGG 233 (513)
T PRK12837 165 PPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVER-----------GGERRRVRARRGVLLAAGG 233 (513)
T ss_pred CCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEE-----------CCcEEEEEeCceEEEeCCC
Confidence 01235566666665567999999999999998888999997641 1234678996 89999999
Q ss_pred CC
Q 018188 242 DG 243 (359)
Q Consensus 242 ~s 243 (359)
++
T Consensus 234 ~~ 235 (513)
T PRK12837 234 FE 235 (513)
T ss_pred cc
Confidence 75
No 45
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.46 E-value=1.1e-12 Score=132.84 Aligned_cols=154 Identities=25% Similarity=0.327 Sum_probs=106.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc-cCCcceee----------------------------h
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW-LGGQLFSA----------------------------M 141 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~-~~g~~~~~----------------------------~ 141 (359)
++||||||+|.||++||+.++ . |.+|+||||....+|++. ..|++... .
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~-~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 80 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELC-H-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY 80 (510)
T ss_pred ccCEEEECccHHHHHHHHHhh-c-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence 589999999999999999986 4 799999999988777663 33332110 0
Q ss_pred hc--chhHHHHHHHcCCcceecC--Ce----------EEEec------hHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe
Q 018188 142 VV--RKPAQRFLDELGVEYDEQD--NY----------VVIKH------AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 201 (359)
Q Consensus 142 ~~--~~~~~~~l~~~G~~~~~~~--~~----------~~~~~------~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~ 201 (359)
+. ....++||.++|++|+... .+ ....+ ...+.+.|.+.+. .|+++++++.++++..+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~--~gV~i~~~~~v~~Li~~ 158 (510)
T PRK08071 81 LVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV--PHVTVVEQEMVIDLIIE 158 (510)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh--cCCEEEECeEhhheeec
Confidence 00 0245678999999997431 11 11111 2346677766653 58999999999999888
Q ss_pred CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC--------CCc--hHHHHHHhcCC
Q 018188 202 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP--------FGA--TGVKRLKSIGM 258 (359)
Q Consensus 202 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~--------~~~--~g~~~~~~~g~ 258 (359)
+++|.|+.+.. . ++....+.||.||+|||+++. .+. +++..+...|.
T Consensus 159 ~g~v~Gv~~~~------~----~g~~~~i~Ak~VVlATGG~~~~~~~~t~~~~~tGdG~~ma~~aGa 215 (510)
T PRK08071 159 NGRCIGVLTKD------S----EGKLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGA 215 (510)
T ss_pred CCEEEEEEEEE------C----CCcEEEEEcCeEEEecCCCcccccCCCCCCCcccHHHHHHHHcCC
Confidence 88999987642 1 122357899999999999873 111 46666666665
No 46
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.45 E-value=2.2e-12 Score=123.41 Aligned_cols=132 Identities=26% Similarity=0.361 Sum_probs=88.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehh---cc-------hh----H-----------
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV---VR-------KP----A----------- 147 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~---~~-------~~----~----------- 147 (359)
||+|||||++|+++|++|++. |.+|+|||++...+|.+...++++.... .. .. .
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-GHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPV 79 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-TSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CEEEECcCHHHHHHHHHHHHC-CCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCccc
Confidence 899999999999999999999 9999999999555555544443332220 00 00 1
Q ss_pred -----------------------HHHHHHcCCcceec-------------CC----e----EEEechHHHHHHHHHHHHh
Q 018188 148 -----------------------QRFLDELGVEYDEQ-------------DN----Y----VVIKHAALFTSTIMSKLLA 183 (359)
Q Consensus 148 -----------------------~~~l~~~G~~~~~~-------------~~----~----~~~~~~~~~~~~L~~~~~~ 183 (359)
.+.++..++++... .. + ....+...+++.|.+.+.
T Consensus 80 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~- 158 (358)
T PF01266_consen 80 GFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQ- 158 (358)
T ss_dssp EEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHH-
T ss_pred ccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHH-
Confidence 12222333321100 00 0 002356778888888876
Q ss_pred CCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCC
Q 018188 184 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGH 241 (359)
Q Consensus 184 ~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg 241 (359)
+.|++++++++|+++..+++++.+|.+.+ ..++||.||+|+|.
T Consensus 159 ~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~---------------g~i~ad~vV~a~G~ 201 (358)
T PF01266_consen 159 RAGVEIRTGTEVTSIDVDGGRVTGVRTSD---------------GEIRADRVVLAAGA 201 (358)
T ss_dssp HTT-EEEESEEEEEEEEETTEEEEEEETT---------------EEEEECEEEE--GG
T ss_pred Hhhhhccccccccchhhcccccccccccc---------------cccccceeEecccc
Confidence 56999999999999999999999898852 45999999999993
No 47
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.45 E-value=1.3e-12 Score=134.43 Aligned_cols=141 Identities=23% Similarity=0.305 Sum_probs=97.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc-cCCcce--------e------------------ehhc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW-LGGQLF--------S------------------AMVV 143 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~-~~g~~~--------~------------------~~~~ 143 (359)
++||||||+|.+|++||+.|++ +.+|+||||....+|++. ..|++. + .-.+
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~--~~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v 82 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP--RARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAA 82 (583)
T ss_pred eccEEEECccHHHHHHHHHHHh--CCCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHH
Confidence 5899999999999999999986 489999999876555332 222211 0 0000
Q ss_pred ------chhHHHHHHHcCCcceecCC--e-----------------EEEe-----chHHHHHHHHHHHHhCCCcEEEcce
Q 018188 144 ------RKPAQRFLDELGVEYDEQDN--Y-----------------VVIK-----HAALFTSTIMSKLLARPNVKLFNAV 193 (359)
Q Consensus 144 ------~~~~~~~l~~~G~~~~~~~~--~-----------------~~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~ 193 (359)
....++||+++|++|+.... + .... ....+...|.+.+. +.|+++++++
T Consensus 83 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~-~~gv~i~~~~ 161 (583)
T PRK08205 83 EIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCV-KHGVEFFNEF 161 (583)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHH-hcCCEEEeCC
Confidence 12456899999999965321 1 1111 13456677777665 7899999999
Q ss_pred eeeeEEEeC----CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 194 AAEDLIVKG----GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 194 ~V~~l~~~~----~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.|++|+.++ ++|.|+...+ .. ++....|.|+.||+|||+++
T Consensus 162 ~v~~Li~~~~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 162 YVLDLLLTETPSGPVAAGVVAYE------LA---TGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred EEEEEEecCCccCCcEEEEEEEE------cC---CCeEEEEEeCeEEECCCCCc
Confidence 999998765 7899987631 11 12235789999999999987
No 48
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.45 E-value=1.4e-12 Score=133.48 Aligned_cols=44 Identities=32% Similarity=0.550 Sum_probs=39.6
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGG 135 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g 135 (359)
.++||||||+| +|++||+.+++. |++|+||||.+..||++...+
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~-G~~v~v~Ek~~~~GG~~~~~g 58 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHEL-GLSVLIVEKSSYVGGSTARSG 58 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHC-CCcEEEEecCCCCcCcccCcC
Confidence 36999999999 899999999999 999999999999998876554
No 49
>PRK10015 oxidoreductase; Provisional
Probab=99.44 E-value=8.3e-13 Score=131.08 Aligned_cols=138 Identities=22% Similarity=0.418 Sum_probs=89.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehh---cc-----hhHHHHHHH---------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV---VR-----KPAQRFLDE--------- 153 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~---~~-----~~~~~~l~~--------- 153 (359)
+||||||||||+|++||+.|+++ |++|+||||...+|.....++.++.... .. .+.......
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 59999999999999999999999 9999999999887654333333221100 00 000000000
Q ss_pred --cCCcceecC-----CeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCC
Q 018188 154 --LGVEYDEQD-----NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 226 (359)
Q Consensus 154 --~G~~~~~~~-----~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 226 (359)
..+.|.... ...+......+.+.|.+++. +.|++++.+++|+++..+++++.++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~-~~Gv~i~~~~~V~~i~~~~~~v~~v~~~--------------- 147 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAE-QAGAQFIPGVRVDALVREGNKVTGVQAG--------------- 147 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHH-HcCCEEECCcEEEEEEEeCCEEEEEEeC---------------
Confidence 001111100 00122334556667777765 6799999999999998877777766542
Q ss_pred CeEEEcCEEEEcCCCCCCC
Q 018188 227 PNVMEAKIVVSSCGHDGPF 245 (359)
Q Consensus 227 ~~~i~A~~VIlAtGg~s~~ 245 (359)
..+++|+.||+|+|..+.+
T Consensus 148 ~~~i~A~~VI~AdG~~s~v 166 (429)
T PRK10015 148 DDILEANVVILADGVNSML 166 (429)
T ss_pred CeEEECCEEEEccCcchhh
Confidence 2579999999999976643
No 50
>PRK08013 oxidoreductase; Provisional
Probab=99.44 E-value=3.1e-12 Score=125.85 Aligned_cols=137 Identities=20% Similarity=0.330 Sum_probs=89.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc----------cee
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE----------YDE 160 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~----------~~~ 160 (359)
++||+||||||+|+++|+.|++. |++|+||||.+.+.-.. ..+.......+.....+.|+++|+. ++.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~~~~~~-g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVPEPLAA-DAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHG 80 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCCccccc-CCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence 48999999999999999999999 99999999987642100 0001112222344455566665541 000
Q ss_pred -----cC---------------CeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCC
Q 018188 161 -----QD---------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD 220 (359)
Q Consensus 161 -----~~---------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~ 220 (359)
.. ...+..+...+.+.|.+.+.+..|++++++++|+++..+++.+. +...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~--------- 150 (400)
T PRK08013 81 MEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAF-LTLK--------- 150 (400)
T ss_pred EEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEE-EEEc---------
Confidence 00 00112334566677777776556899999999999987766543 3222
Q ss_pred CCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 221 TQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 221 ~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++.+++||+||.|+|.+|.
T Consensus 151 -----~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 151 -----DGSMLTARLVVGADGANSW 169 (400)
T ss_pred -----CCCEEEeeEEEEeCCCCcH
Confidence 2367999999999997764
No 51
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.44 E-value=2e-12 Score=132.35 Aligned_cols=141 Identities=26% Similarity=0.394 Sum_probs=98.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccC-Cccee-----------------------eh-----
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLG-GQLFS-----------------------AM----- 141 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~-g~~~~-----------------------~~----- 141 (359)
++||||||+|.+|+++|+.|++. |++|+||||....||.+... |++.. ..
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~-G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 84 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADS-GLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVVGDQG 84 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHhcccc
Confidence 58999999999999999999999 99999999998878765332 22110 00
Q ss_pred ------hc------chhHHHHHHHcCCcceecCC---e-------E---EEe----------------------------
Q 018188 142 ------VV------RKPAQRFLDELGVEYDEQDN---Y-------V---VIK---------------------------- 168 (359)
Q Consensus 142 ------~~------~~~~~~~l~~~G~~~~~~~~---~-------~---~~~---------------------------- 168 (359)
.+ ..+.++||+++|++|..... + . ...
T Consensus 85 ~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (557)
T PRK12844 85 PASSPERREAYLRAGPAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMATPPGTV 164 (557)
T ss_pred cCCCHHHHHHHHhhhHHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCccccccccc
Confidence 00 02456899999998853210 0 0 000
Q ss_pred -----------------------------------------chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEE
Q 018188 169 -----------------------------------------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGG 207 (359)
Q Consensus 169 -----------------------------------------~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~g 207 (359)
....+...|.+.+. +.|++++++++|++|+.++++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~-~~gv~i~~~~~v~~Li~~~g~v~G 243 (557)
T PRK12844 165 VMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAAL-AAGVPLWTNTPLTELIVEDGRVVG 243 (557)
T ss_pred ccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEeCCEEEE
Confidence 01233445555554 679999999999999998899999
Q ss_pred EEEceeeeeccCCCCCCCCCeEEEcC-EEEEcCCCCCC
Q 018188 208 VVTNWALVSMNHDTQSCMDPNVMEAK-IVVSSCGHDGP 244 (359)
Q Consensus 208 v~~~~~~~~~~~~~~~~g~~~~i~A~-~VIlAtGg~s~ 244 (359)
|++.. ++...++.|+ .||+|||+++.
T Consensus 244 v~~~~-----------~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 244 VVVVR-----------DGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred EEEEE-----------CCeEEEEEecceEEEecCCccC
Confidence 87741 1234678895 79999998874
No 52
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.44 E-value=2.2e-12 Score=132.68 Aligned_cols=141 Identities=18% Similarity=0.323 Sum_probs=95.6
Q ss_pred cEEEECCChHHHHHHHHhh----cCCCCeEEEEeeccCCCCCcccCCc--c---e------ee-----------------
Q 018188 93 DVIVVGAGSAGLSCAYEIS----KNPSIRVAIIEQSVSPGGGAWLGGQ--L---F------SA----------------- 140 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La----~~~G~~V~vlEk~~~~GG~~~~~g~--~---~------~~----------------- 140 (359)
||||||+|.|||.||+.++ +. |++|+||||....+.+++..|. . + +.
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~-G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK-GLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC-CCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 8999999999999999998 67 9999999998754444433331 1 0 00
Q ss_pred -h----hc--chhHHHHHHHcCCcceecC-CeEEEe--------chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeC--
Q 018188 141 -M----VV--RKPAQRFLDELGVEYDEQD-NYVVIK--------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-- 202 (359)
Q Consensus 141 -~----~~--~~~~~~~l~~~G~~~~~~~-~~~~~~--------~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~-- 202 (359)
. ++ ..+.++||.++|++|+... ...... ....+.+.+...+ .+.++++++++.+++|+.++
T Consensus 80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l-~~~~~~i~~~~~v~~Ll~d~~~ 158 (614)
T TIGR02061 80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAA-KNALGDIFERIFIVKLLLDKNT 158 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHH-HhCCCeEEcccEEEEEEecCCC
Confidence 0 00 0246789999999997531 111111 1334444444444 35678999999999999864
Q ss_pred -CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 203 -GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 203 -~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++|.||.+.+ .. ++....+.|+.||+|||+++.
T Consensus 159 ~GrV~Gv~~~~------~~---~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 159 PNRIAGAVGFN------VR---ANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred CCeEEEEEEEE------eC---CCcEEEEECCEEEECCCcccc
Confidence 6899987632 11 223467999999999999763
No 53
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.43 E-value=1.7e-12 Score=124.08 Aligned_cols=134 Identities=23% Similarity=0.324 Sum_probs=86.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc---------ce--
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE---------YD-- 159 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~-- 159 (359)
++||+|||||++|+++|+.|+++ |++|+|+||.+.+.... .+ ..+.....+.|+++|+. ..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~~~~~~--~~-----~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 72 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPDPRPKG--RG-----IGLSPNSLRILQRLGLLDEILARGSPHEVM 72 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSSCCCSS--SS-----EEEEHHHHHHHHHTTEHHHHHHHSEEECEE
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhcccccccc--cc-----cccccccccccccccchhhhhhhcccccce
Confidence 37999999999999999999999 99999999987653211 11 12233344555555431 00
Q ss_pred -----ec----------------------CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEce
Q 018188 160 -----EQ----------------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNW 212 (359)
Q Consensus 160 -----~~----------------------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~ 212 (359)
.. .......+...+.+.|.+.+. +.|++++++++++++..+++.+..+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~gv~i~~~~~v~~~~~d~~~~~~~~~~- 150 (356)
T PF01494_consen 73 RIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAE-ERGVDIRFGTRVVSIEQDDDGVTVVVRD- 150 (356)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHH-HHTEEEEESEEEEEEEEETTEEEEEEEE-
T ss_pred eeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhh-hhhhhheeeeeccccccccccccccccc-
Confidence 00 001112234456677777665 5679999999999999888877654432
Q ss_pred eeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 213 ALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 213 ~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
. .++...+++||+||.|+|.+|
T Consensus 151 ------~---~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 151 ------G---EDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp ------T---CTCEEEEEEESEEEE-SGTT-
T ss_pred ------c---cCCceeEEEEeeeecccCccc
Confidence 1 112345899999999999776
No 54
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.42 E-value=2.6e-12 Score=128.88 Aligned_cols=135 Identities=22% Similarity=0.344 Sum_probs=95.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcce------------------------eehhc----
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLF------------------------SAMVV---- 143 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~------------------------~~~~~---- 143 (359)
+||||||+|++|++||+.|++. |.+|+||||....+.+.+..+++. +...+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6999999999999999999999 999999999864332222222210 00000
Q ss_pred --chhHHHHHHHcCCcceecC-----CeEEEe-----chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEc
Q 018188 144 --RKPAQRFLDELGVEYDEQD-----NYVVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN 211 (359)
Q Consensus 144 --~~~~~~~l~~~G~~~~~~~-----~~~~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~ 211 (359)
..+.++||.++|++|+... .++... ....+...|.+.+. +.|+++++. .++++..+++++.|+...
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~-~v~~l~~~~g~v~Gv~~~ 158 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHAR-ELGVNFIRG-FAEELAIKNGKAYGVFLD 158 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHH-hcCCEEEEe-EeEEEEeeCCEEEEEEEC
Confidence 1245589999999986421 122211 23456777777764 679999876 788888777888888763
Q ss_pred eeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 212 WALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 212 ~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
...+.++.||+|||+++.
T Consensus 159 ---------------g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 159 ---------------GELLKFDATVIATGGFSG 176 (466)
T ss_pred ---------------CEEEEeCeEEECCCcCcC
Confidence 256899999999999874
No 55
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.42 E-value=5.8e-12 Score=123.48 Aligned_cols=135 Identities=21% Similarity=0.334 Sum_probs=88.6
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc----------ce
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE----------YD 159 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~----------~~ 159 (359)
..+||+|||||++|+++|+.|+++ |++|+||||.+.+.-. ..+.......+.+...+.|+++|+. +.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~~~~~--~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~ 81 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADA-GLSVALVEGREPPRWQ--ADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYR 81 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCCcccc--cCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCccc
Confidence 458999999999999999999999 9999999998754211 0011111122334444555555541 10
Q ss_pred e------c--------------CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccC
Q 018188 160 E------Q--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 219 (359)
Q Consensus 160 ~------~--------------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~ 219 (359)
. . ..+.+..+...+.+.|.+.+. +.|++++++++|+++..+++.+. +...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~-~~gv~i~~~~~v~~i~~~~~~v~-v~~~-------- 151 (392)
T PRK08773 82 RMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALH-AAGVQLHCPARVVALEQDADRVR-LRLD-------- 151 (392)
T ss_pred EEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHH-hCCCEEEcCCeEEEEEecCCeEE-EEEC--------
Confidence 0 0 001112234566677776665 57999999999999987776554 4332
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 220 DTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 220 ~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+..+++||.||.|+|..+
T Consensus 152 ------~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 152 ------DGRRLEAALAIAADGAAS 169 (392)
T ss_pred ------CCCEEEeCEEEEecCCCc
Confidence 135799999999999766
No 56
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.41 E-value=5.6e-12 Score=117.86 Aligned_cols=130 Identities=25% Similarity=0.311 Sum_probs=85.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCC---------------
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGV--------------- 156 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~--------------- 156 (359)
|||+|||||++|+++|+.|++. |++|+|+||...++. .+.+..+.. ...+.+...+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~~~~-~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~ 72 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSFPRY-KPCGGALSP------RVLEELDLPLELIVNLVRGARFFSPN 72 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCc-ccccCccCH------hHHHHhcCCchhhhhheeeEEEEcCC
Confidence 6999999999999999999999 999999999987653 222221111 11111111000
Q ss_pred ----cceecCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEc
Q 018188 157 ----EYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA 232 (359)
Q Consensus 157 ----~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A 232 (359)
.+.....+....+...+.+.|.+.+. +.|++++++++|+++..+++.+. +.... +..+++|
T Consensus 73 ~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~-~~gv~~~~~~~v~~~~~~~~~~~-~~~~~-------------~~~~~~a 137 (295)
T TIGR02032 73 GDSVEIPIETELAYVIDRDAFDEQLAERAQ-EAGAELRLGTTVLDVEIHDDRVV-VIVRG-------------GEGTVTA 137 (295)
T ss_pred CcEEEeccCCCcEEEEEHHHHHHHHHHHHH-HcCCEEEeCcEEeeEEEeCCEEE-EEEcC-------------ccEEEEe
Confidence 00000112233455667777777775 67999999999999988777653 22210 2367999
Q ss_pred CEEEEcCCCCCC
Q 018188 233 KIVVSSCGHDGP 244 (359)
Q Consensus 233 ~~VIlAtGg~s~ 244 (359)
|+||+|+|.++.
T Consensus 138 ~~vv~a~G~~s~ 149 (295)
T TIGR02032 138 KIVIGADGSRSI 149 (295)
T ss_pred CEEEECCCcchH
Confidence 999999997763
No 57
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.40 E-value=1.9e-13 Score=135.59 Aligned_cols=136 Identities=26% Similarity=0.420 Sum_probs=40.3
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeeh------hcchhHHHHHHHcCC----cceecC
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAM------VVRKPAQRFLDELGV----EYDEQD 162 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~------~~~~~~~~~l~~~G~----~~~~~~ 162 (359)
||||||||++|++||+.+++. |++|+|||+...+||....++..+... .......++++++.. +.....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~-G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~ 79 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA-GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRY 79 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST------------
T ss_pred CEEEECccHHHHHHHHHHHHC-CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccc
Confidence 899999999999999999999 999999999999998766555322211 112223344443322 011111
Q ss_pred CeE--EEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCC
Q 018188 163 NYV--VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCG 240 (359)
Q Consensus 163 ~~~--~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtG 240 (359)
.+. ...+... ...++++++++.|+++++++.|.++..++++|.+|.+.+. . ...+|+||.||+|||
T Consensus 80 ~~~~~~~~~~~~-~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~----------~-g~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 80 GWVSNVPFDPEV-FKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETK----------S-GRKEIRAKVFIDATG 147 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccccccccccccc----------c-ccccccccccccccc
Confidence 110 1112222 3333444446789999999999999999889999987520 1 157899999999999
Q ss_pred C
Q 018188 241 H 241 (359)
Q Consensus 241 g 241 (359)
-
T Consensus 148 ~ 148 (428)
T PF12831_consen 148 D 148 (428)
T ss_dssp -
T ss_pred c
Confidence 3
No 58
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.40 E-value=4.4e-12 Score=136.43 Aligned_cols=145 Identities=21% Similarity=0.325 Sum_probs=97.8
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccC--Ccce-------e------------------ehh
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLG--GQLF-------S------------------AMV 142 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~--g~~~-------~------------------~~~ 142 (359)
.++||||||+|.+||.||+.+++. |.+|+||||....+++.... +++. + ...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~-G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~ 90 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEH-GANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRT 90 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHC-CCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHH
Confidence 458999999999999999999999 99999999987522211111 0110 0 000
Q ss_pred cc------hhHHHHHHHcCCcceecCC--eEE--E----------echHHHHHHHHHHHHh---CCCcEEEcceeeeeEE
Q 018188 143 VR------KPAQRFLDELGVEYDEQDN--YVV--I----------KHAALFTSTIMSKLLA---RPNVKLFNAVAAEDLI 199 (359)
Q Consensus 143 ~~------~~~~~~l~~~G~~~~~~~~--~~~--~----------~~~~~~~~~L~~~~~~---~~gv~i~~~~~V~~l~ 199 (359)
++ ...++||+++|++|+.... +.. + .....+...|.+.+.+ ..+++++.++.+.+++
T Consensus 91 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li 170 (897)
T PRK13800 91 VYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVL 170 (897)
T ss_pred HHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeEEEE
Confidence 11 2456899999999976422 110 0 0233455566655543 2478999998889998
Q ss_pred EeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 200 VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 200 ~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
.++++|.|+...+ .. +++...|.||.||+||||++.
T Consensus 171 ~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~g~ 206 (897)
T PRK13800 171 TEGGRAVGAAALN------TR---TGEFVTVGAKAVILATGPCGR 206 (897)
T ss_pred eeCCEEEEEEEEe------cC---CCcEEEEECCEEEECCCcccc
Confidence 8889999987632 11 224567999999999999864
No 59
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.39 E-value=5.5e-12 Score=125.55 Aligned_cols=139 Identities=28% Similarity=0.306 Sum_probs=94.3
Q ss_pred cEEEECCChHHHHHHHHhhcCCC-CeEEEEeeccCCCCCcccCC-cceee--------------------h------hc-
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPS-IRVAIIEQSVSPGGGAWLGG-QLFSA--------------------M------VV- 143 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G-~~V~vlEk~~~~GG~~~~~g-~~~~~--------------------~------~~- 143 (359)
||||||+|.+|++||+.|+++ | .+|+||||....||.+...+ .+... . ..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~-G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA-GAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGIND 79 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 899999999999999999999 9 99999999988877654322 11100 0 00
Q ss_pred ----------chhHHHHHHHcCCcceecC-------CeEEE-------echHHHHHHHHHHHHhCCCcEEEcceeeeeEE
Q 018188 144 ----------RKPAQRFLDELGVEYDEQD-------NYVVI-------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 199 (359)
Q Consensus 144 ----------~~~~~~~l~~~G~~~~~~~-------~~~~~-------~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~ 199 (359)
.....+||. .++.+.... .+... .....+...|.+.+. +.|++++++++|++++
T Consensus 80 ~~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~gv~i~~~~~v~~l~ 157 (439)
T TIGR01813 80 PELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAK-KEGIDTRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHH-HcCCEEEeCCEeeEeE
Confidence 013456777 454443210 01110 123456777777665 6799999999999999
Q ss_pred Ee-CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 200 VK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 200 ~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
.+ ++++.+|++.. . .+....+.+|.||+|||+++.
T Consensus 158 ~~~~g~v~Gv~~~~------~----~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 158 QDDQGTVVGVVVKG------K----GKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred ECCCCcEEEEEEEe------C----CCeEEEEecceEEEecCCCCC
Confidence 86 46888887641 1 112246889999999998874
No 60
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.39 E-value=4.1e-12 Score=130.61 Aligned_cols=40 Identities=30% Similarity=0.625 Sum_probs=37.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
++||||||+|.+|++||+.++++ |++|+||||....||.+
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~-G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAAR-GLDTLVVEKSAHFGGST 50 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHC-CCcEEEEEcCCCCCchH
Confidence 58999999999999999999999 99999999998877754
No 61
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.39 E-value=4.4e-12 Score=130.78 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=102.4
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCC-CCc-ccCCcce---------ee-------------h--------
Q 018188 94 VIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPG-GGA-WLGGQLF---------SA-------------M-------- 141 (359)
Q Consensus 94 VvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~G-G~~-~~~g~~~---------~~-------------~-------- 141 (359)
|||||+|.||++||+.+++. |.+|+||||...++ |++ +..|++. +. .
T Consensus 1 VlVVG~G~AGl~AAl~Aae~-G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 79 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAEL-GYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVK 79 (603)
T ss_pred CEEECccHHHHHHHHHHHHc-CCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 69999999999999999999 99999999998443 222 2222110 00 0
Q ss_pred -hc--chhHHHHHHHcCCcceecCCe------------EEE-----echHHHHHHHHHHHHh---CCCcEEEcceeeeeE
Q 018188 142 -VV--RKPAQRFLDELGVEYDEQDNY------------VVI-----KHAALFTSTIMSKLLA---RPNVKLFNAVAAEDL 198 (359)
Q Consensus 142 -~~--~~~~~~~l~~~G~~~~~~~~~------------~~~-----~~~~~~~~~L~~~~~~---~~gv~i~~~~~V~~l 198 (359)
+. ....++||+++|++|+..... ... .....+...|.+.+.+ +.|+++++++.+++|
T Consensus 80 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~L 159 (603)
T TIGR01811 80 RLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDI 159 (603)
T ss_pred HHHHHHHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEE
Confidence 00 124668999999999753210 000 1233455555554432 358999999999999
Q ss_pred EEeC-CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCC--------Cc--hHHHHHHhcCC
Q 018188 199 IVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPF--------GA--TGVKRLKSIGM 258 (359)
Q Consensus 199 ~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~--------~~--~g~~~~~~~g~ 258 (359)
+.++ ++|.||.+.+ .. ++....+.||.||+||||++.. +. +|+..+...|.
T Consensus 160 i~dd~grV~GV~~~~------~~---~g~~~~i~AkaVVLATGG~g~~~~~~t~~~~~tGdGi~mA~~aGa 221 (603)
T TIGR01811 160 IVVDGNRARGIIARN------LV---TGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGA 221 (603)
T ss_pred EEcCCCEEEEEEEEE------CC---CCcEEEEEcCEEEECCCCCcCcCCccCCCCCcCcHHHHHHHHcCC
Confidence 9854 5899998742 11 1234678999999999997521 11 56677776665
No 62
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.39 E-value=7.6e-12 Score=122.61 Aligned_cols=131 Identities=24% Similarity=0.373 Sum_probs=96.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc-CCCCCcccCCcceeehhcchhHHHHHHHcCC-cc----------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV-SPGGGAWLGGQLFSAMVVRKPAQRFLDELGV-EY---------- 158 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~-~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~-~~---------- 158 (359)
.+||+|||||++|+++|+.|++. |++|+|||+.+ .. ...+ ....+.....+.|+++|+ +-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~~~~~----~~~~---r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~ 73 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERAPREL----LERG---RGIALSPNALRALERLGLWDRLEALGVPPLH 73 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccCcccc----ccCc---eeeeecHhHHHHHHHcCChhhhhhccCCcee
Confidence 37999999999999999999999 99999999982 21 0011 344566677888888886 20
Q ss_pred ----eecC--------------CeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCC
Q 018188 159 ----DEQD--------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD 220 (359)
Q Consensus 159 ----~~~~--------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~ 220 (359)
+... .+....+...+.+.|.+.+.+..+++++++++|+.+..+++.+. +... .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~-------~- 144 (387)
T COG0654 74 VMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLS-------F- 144 (387)
T ss_pred eEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEc-------C-
Confidence 0000 01123455678888888887667799999999999999887777 5443 0
Q ss_pred CCCCCCCeEEEcCEEEEcCCCCC
Q 018188 221 TQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 221 ~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++.+++||+||.|+|.+|
T Consensus 145 -----dG~~~~a~llVgADG~~S 162 (387)
T COG0654 145 -----DGETLDADLLVGADGANS 162 (387)
T ss_pred -----CCcEEecCEEEECCCCch
Confidence 135899999999999765
No 63
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.38 E-value=1.3e-11 Score=121.78 Aligned_cols=136 Identities=20% Similarity=0.354 Sum_probs=86.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCC---------cce--
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGV---------EYD-- 159 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~-- 159 (359)
++||+|||||++|+++|+.|++. |++|+|+||.+.+.-.. . | ....+.....+.|+++|+ ++.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~-~-g---~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 91 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPAEAAAA-K-G---QAYALSLLSARIFEGIGVWEKILPQIGKFRQI 91 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCccccCC-C-C---cEEEechHHHHHHHHCChhhhhHhhcCCccEE
Confidence 58999999999999999999999 99999999987642110 0 0 011122233444444443 110
Q ss_pred --------------ec----CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCC
Q 018188 160 --------------EQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT 221 (359)
Q Consensus 160 --------------~~----~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~ 221 (359)
.. ..+.+......+.+.|++.+.+..+++++++++++++..+++.+. |.... +
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~-------~- 162 (415)
T PRK07364 92 RLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLEI-------E- 162 (415)
T ss_pred EEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEcc-------C-
Confidence 00 001111222356677777776556899999999999987766543 33321 0
Q ss_pred CCCCCCeEEEcCEEEEcCCCCCC
Q 018188 222 QSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 222 ~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+...+++||.||.|+|.+|.
T Consensus 163 ---~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 163 ---GKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred ---CcceEEeeeEEEEeCCCCch
Confidence 12257999999999998774
No 64
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.38 E-value=1.1e-11 Score=127.53 Aligned_cols=44 Identities=32% Similarity=0.483 Sum_probs=39.3
Q ss_pred ccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc
Q 018188 88 TYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW 132 (359)
Q Consensus 88 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~ 132 (359)
.+.++||||||+|++|++||+.++++ |.+|+||||....||.+.
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~~-G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARKL-GLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHc-CCeEEEEecCCCCCCccc
Confidence 34579999999999999999999999 999999999998887653
No 65
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.38 E-value=7.6e-12 Score=127.82 Aligned_cols=142 Identities=21% Similarity=0.265 Sum_probs=93.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeeh-----------------------------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAM----------------------------- 141 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~----------------------------- 141 (359)
++||+|||||+.|+++|+.|+++ |++|+||||+....|+++.+.++.+..
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-G~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~ 84 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-GLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCV 84 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-CCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhh
Confidence 58999999999999999999999 999999999876555554433222110
Q ss_pred -------h-cch-------hHHHHHHHcCCcceec-------------CC----eEE---EechHHHHHHHHHHHHhCCC
Q 018188 142 -------V-VRK-------PAQRFLDELGVEYDEQ-------------DN----YVV---IKHAALFTSTIMSKLLARPN 186 (359)
Q Consensus 142 -------~-~~~-------~~~~~l~~~G~~~~~~-------------~~----~~~---~~~~~~~~~~L~~~~~~~~g 186 (359)
. ... ...+++...|++.... .. +.+ ..++..+...+...+. +.|
T Consensus 85 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~-~~G 163 (546)
T PRK11101 85 EPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAK-EHG 163 (546)
T ss_pred cccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHH-hCC
Confidence 0 000 0112223344432110 00 000 2345566666666664 789
Q ss_pred cEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 187 VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 187 v~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++++++++|+++..+++++.+|.+.+. . +++..+|+|+.||+|+|.++
T Consensus 164 a~i~~~t~V~~i~~~~~~v~gv~v~d~------~---~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 164 AQILTYHEVTGLIREGDTVCGVRVRDH------L---TGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred CEEEeccEEEEEEEcCCeEEEEEEEEc------C---CCcEEEEECCEEEECCChhH
Confidence 999999999999988888888876321 1 11236799999999999765
No 66
>PRK07045 putative monooxygenase; Reviewed
Probab=99.38 E-value=1.2e-11 Score=121.01 Aligned_cols=132 Identities=18% Similarity=0.291 Sum_probs=85.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc-------------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE------------- 157 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~------------- 157 (359)
.+||+||||||+|+++|+.|+++ |++|+|+||.+.+.-. .++. .+.+...+.|+++|+.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~~~~~--~~~~-----~l~~~~~~~L~~lGl~~~~~~~~~~~~~~ 76 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAARNRAQ--NGAD-----LLKPSGIGVVRAMGLLDDVFAAGGLRRDA 76 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCcccCC--Cccc-----ccCccHHHHHHHcCCHHHHHhcccccccc
Confidence 48999999999999999999999 9999999998865210 0000 1112222223322220
Q ss_pred --ceec--------------CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCE-EEEEEEceeeeeccCC
Q 018188 158 --YDEQ--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHD 220 (359)
Q Consensus 158 --~~~~--------------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~-v~gv~~~~~~~~~~~~ 220 (359)
+... ..+....+...+.+.|++.+....|++++++++++++..+++. +..|...
T Consensus 77 ~~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~--------- 147 (388)
T PRK07045 77 MRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLS--------- 147 (388)
T ss_pred eEEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeC---------
Confidence 0000 0111122334566777777655678999999999999876543 3445442
Q ss_pred CCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 221 TQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 221 ~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++.++.+|.||.|+|..|.
T Consensus 148 -----~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 148 -----DGERVAPTVLVGADGARSM 166 (388)
T ss_pred -----CCCEEECCEEEECCCCChH
Confidence 2357999999999997764
No 67
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.38 E-value=1.2e-11 Score=120.83 Aligned_cols=139 Identities=22% Similarity=0.289 Sum_probs=93.1
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCCcc-cCCc-----c-eeeh------hc--chhHHHHHHHc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGAW-LGGQ-----L-FSAM------VV--RKPAQRFLDEL 154 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~~~-~~g~-----~-~~~~------~~--~~~~~~~l~~~ 154 (359)
++||+|||||+.|+++|++|++. |+++|+||||...+|..+. .+.+ + +... .. +....++++++
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~ 82 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQL 82 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999997 2399999999988763221 1111 1 1110 00 01234666667
Q ss_pred CCcceecCCeEE------------------------------------------------------EechHHHHHHHHHH
Q 018188 155 GVEYDEQDNYVV------------------------------------------------------IKHAALFTSTIMSK 180 (359)
Q Consensus 155 G~~~~~~~~~~~------------------------------------------------------~~~~~~~~~~L~~~ 180 (359)
+++|...+...+ ..+...++..|.+.
T Consensus 83 ~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e~ 162 (429)
T COG0579 83 GIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEE 162 (429)
T ss_pred CCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHHH
Confidence 765544322111 22445677888888
Q ss_pred HHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 181 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 181 ~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+. ++|++++++++|++|.++++.++.+.+.. |+.. ++|+.||+|.|+.+
T Consensus 163 a~-~~g~~i~ln~eV~~i~~~~dg~~~~~~~~------------g~~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 163 AQ-ANGVELRLNTEVTGIEKQSDGVFVLNTSN------------GEET-LEAKFVINAAGLYA 211 (429)
T ss_pred HH-HcCCEEEecCeeeEEEEeCCceEEEEecC------------CcEE-EEeeEEEECCchhH
Confidence 86 56999999999999999876544444431 1122 99999999999655
No 68
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.38 E-value=1.5e-12 Score=128.96 Aligned_cols=216 Identities=18% Similarity=0.262 Sum_probs=124.3
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh-HHHHHH----HcCCcceec-CC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AQRFLD----ELGVEYDEQ-DN 163 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~-~~~~l~----~~G~~~~~~-~~ 163 (359)
.+||+||||+|++|..+|++|++. |.+|+++|+....||.|.+.||++.+.+++.. ..+.+. .+|+..... -+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id 81 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID 81 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence 359999999999999999999999 99999999998899999999999998887653 334444 345543332 11
Q ss_pred eEE-EechHH---HHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcC
Q 018188 164 YVV-IKHAAL---FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSC 239 (359)
Q Consensus 164 ~~~-~~~~~~---~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAt 239 (359)
|.. ..+... ....-.+.+.+.+|++++.++ .-..+++.|. +.. . +..+++++++|+||
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~---a~f~~~~~v~---V~~-------~-----~~~~~~a~~iiIAT 143 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGE---ARFVDPHTVE---VTG-------E-----DKETITADNIIIAT 143 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE---EEECCCCEEE---EcC-------C-----CceEEEeCEEEEcC
Confidence 111 111111 122223445556799998874 1122334332 210 0 24789999999999
Q ss_pred CCCCCC----CchHHHHHHhcCC--cccccccccccccchhhHHh----hhccccCCCeeEeceEEEeecCCCCCCCccc
Q 018188 240 GHDGPF----GATGVKRLKSIGM--IDSVPGMKALDMNTAEDAIV----RLTREIVPGMIVTGMEVAEIDGAPRMGPTFG 309 (359)
Q Consensus 240 Gg~s~~----~~~g~~~~~~~g~--~~~~p~~~~~~~~~~~~~~~----~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g 309 (359)
|+.... +..+.+.+.+.+. ...+|. ..++ +++-|+..=+...|.+++++....+..|.+.
T Consensus 144 GS~p~~~~~~~~~~~~~~~s~~~l~~~~lP~----------~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D 213 (454)
T COG1249 144 GSRPRIPPGPGIDGARILDSSDALFLLELPK----------SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGED 213 (454)
T ss_pred CCCCcCCCCCCCCCCeEEechhhcccccCCC----------EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCC
Confidence 977531 1111111111110 001111 0100 1122222334456888999987777777653
Q ss_pred eEEEehHHHHHHHHHHhCC---CccccCCccccc
Q 018188 310 AMMISGQKAAHLALKALGQ---PNAIDGTFSEVT 340 (359)
Q Consensus 310 ~~l~sG~~~~~l~l~~~~~---~~~~~~~~~~~~ 340 (359)
+.+.+.+.+.|.+ ....+..+++.+
T Consensus 214 ------~ei~~~~~~~l~~~gv~i~~~~~v~~~~ 241 (454)
T COG1249 214 ------PEISKELTKQLEKGGVKILLNTKVTAVE 241 (454)
T ss_pred ------HHHHHHHHHHHHhCCeEEEccceEEEEE
Confidence 5555666555544 234555554443
No 69
>PRK09126 hypothetical protein; Provisional
Probab=99.38 E-value=1.3e-11 Score=120.83 Aligned_cols=135 Identities=19% Similarity=0.303 Sum_probs=88.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc-cCCcceeehhcchhHHHHHHHcCCc--cee-------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW-LGGQLFSAMVVRKPAQRFLDELGVE--YDE------- 160 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~-~~g~~~~~~~~~~~~~~~l~~~G~~--~~~------- 160 (359)
++||+|||||++|+++|+.|+++ |++|+|+||...+.-... ..| ....+.....+.|+++|+. +..
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~g---~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~ 78 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPLAALADPAFDG---REIALTHASREILQRLGAWDRIPEDEISPLR 78 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCcccccCCCCch---hHHHhhHHHHHHHHHCCChhhhccccCCccc
Confidence 48999999999999999999999 999999999876421000 000 0112233344555555541 000
Q ss_pred -------c--------------CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccC
Q 018188 161 -------Q--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 219 (359)
Q Consensus 161 -------~--------------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~ 219 (359)
. ..+.+..+...+.+.|++.+.+..|++++++++|+++..+++.+. |...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~-v~~~-------- 149 (392)
T PRK09126 79 DAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQ-VTLA-------- 149 (392)
T ss_pred eEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEE-EEEc--------
Confidence 0 001111233445667777776668999999999999987666543 4332
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 220 DTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 220 ~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++.+++||+||.|+|..+.
T Consensus 150 ------~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 150 ------NGRRLTARLLVAADSRFSA 168 (392)
T ss_pred ------CCCEEEeCEEEEeCCCCch
Confidence 2357999999999997664
No 70
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.38 E-value=3.6e-12 Score=123.98 Aligned_cols=141 Identities=28% Similarity=0.511 Sum_probs=106.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCC-CCCcccCCcceee------------------------h----hc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSP-GGGAWLGGQLFSA------------------------M----VV 143 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~-GG~~~~~g~~~~~------------------------~----~~ 143 (359)
||+|||+|.|||++|+.|.+. .+|+||-|.... +.+.|..|++-.. . ++
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~--~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv 86 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS--FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIV 86 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC--CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 999999999999999999875 899999998765 3344666653211 1 11
Q ss_pred c--hhHHHHHHHcCCcceecCC--eEE----------Eec-----hHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCC-
Q 018188 144 R--KPAQRFLDELGVEYDEQDN--YVV----------IKH-----AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG- 203 (359)
Q Consensus 144 ~--~~~~~~l~~~G~~~~~~~~--~~~----------~~~-----~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~- 203 (359)
. ...++||.++|++|+.... |.+ +.| ...++..|+.++.+.++|+++.++.+.+|..+++
T Consensus 87 ~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~ 166 (518)
T COG0029 87 SEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI 166 (518)
T ss_pred HhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc
Confidence 1 2467999999999998752 333 222 3567889999998779999999999999999888
Q ss_pred EEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018188 204 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPF 245 (359)
Q Consensus 204 ~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~ 245 (359)
.+.|+.+.+ .. +....|.|+.||+||||.|.+
T Consensus 167 ~~~Gv~~~~------~~----~~~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 167 GVAGVLVLN------RN----GELGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred eEeEEEEec------CC----CeEEEEecCeEEEecCCCccc
Confidence 555887742 10 024789999999999999853
No 71
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.36 E-value=7.2e-12 Score=127.20 Aligned_cols=137 Identities=29% Similarity=0.389 Sum_probs=90.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc-CCCCCccc--CCcceeehhcc------hhHHHHHHHcCCcceec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV-SPGGGAWL--GGQLFSAMVVR------KPAQRFLDELGVEYDEQ 161 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~-~~GG~~~~--~g~~~~~~~~~------~~~~~~l~~~G~~~~~~ 161 (359)
+|||||||||+||+.||+.+++. |.+|+|||+.. .+|+-... -|+.....+++ ....++++..++++...
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHc-CCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 59999999999999999999999 99999999984 45431111 11111111111 12234445555554322
Q ss_pred C----CeEE----EechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcC
Q 018188 162 D----NYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK 233 (359)
Q Consensus 162 ~----~~~~----~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~ 233 (359)
. .... ..+...+...+.+.+.+..|++++ ...|.++..+++++.||.+.+ +..+.|+
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~d--------------G~~I~Ak 147 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQD--------------GLEFRAK 147 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECC--------------CCEEECC
Confidence 1 1111 223445666666666656689986 457999988888999998752 3679999
Q ss_pred EEEEcCCCCC
Q 018188 234 IVVSSCGHDG 243 (359)
Q Consensus 234 ~VIlAtGg~s 243 (359)
.||+|||.+.
T Consensus 148 ~VIlATGTFL 157 (618)
T PRK05192 148 AVVLTTGTFL 157 (618)
T ss_pred EEEEeeCcch
Confidence 9999999653
No 72
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.36 E-value=1.6e-11 Score=126.37 Aligned_cols=44 Identities=32% Similarity=0.540 Sum_probs=39.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLG 134 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~ 134 (359)
.++||||||+|.+|+++|+.++++ |++|+||||....||.+...
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~-g~~v~~iek~~~~gg~~~~~ 54 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWH-GLKVIVVEKDPVFGGTTAWS 54 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCcccccc
Confidence 358999999999999999999999 99999999998888766543
No 73
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.36 E-value=2e-11 Score=119.32 Aligned_cols=134 Identities=25% Similarity=0.363 Sum_probs=88.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCccee----------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDE---------- 160 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~---------- 160 (359)
.+||+|||||++|+++|+.|++. |++|+|+||...+... ..+.......+.+...+.|+++|+.-..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~--~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ 81 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAPPRPA--DDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYD 81 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCcccc--CCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceE
Confidence 48999999999999999999999 9999999998765321 0011112223344455566665541100
Q ss_pred -----c--------------CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCC
Q 018188 161 -----Q--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT 221 (359)
Q Consensus 161 -----~--------------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~ 221 (359)
. ....+..+...+.+.|.+.+.+..+++++ +++++++..+++.+. +.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~-v~~~---------- 149 (388)
T PRK07608 82 MRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAAT-LTLA---------- 149 (388)
T ss_pred EEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEE-EEEC----------
Confidence 0 00112234566778887877644349999 889999987666553 4432
Q ss_pred CCCCCCeEEEcCEEEEcCCCCC
Q 018188 222 QSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 222 ~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+..+++||+||.|+|.++
T Consensus 150 ----~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 150 ----DGQVLRADLVVGADGAHS 167 (388)
T ss_pred ----CCCEEEeeEEEEeCCCCc
Confidence 135799999999999776
No 74
>PRK06184 hypothetical protein; Provisional
Probab=99.36 E-value=1.4e-11 Score=124.70 Aligned_cols=133 Identities=20% Similarity=0.292 Sum_probs=86.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc---------cee-
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE---------YDE- 160 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~~- 160 (359)
++||+||||||+|+++|+.|+++ |++|+||||.+.+.... ....+.+...+.|+++|+. +..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~~~~~~-------ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~ 74 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPEPFPGS-------RGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPM 74 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCcCc-------cceeecHHHHHHHHHcCcHHHHHhcCccccce
Confidence 48999999999999999999999 99999999987552111 1112234445555555541 100
Q ss_pred -----cCC-------------------eEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeee
Q 018188 161 -----QDN-------------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS 216 (359)
Q Consensus 161 -----~~~-------------------~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~ 216 (359)
... .....+...+.+.|.+.+. +.|++++++++++++..+++.+......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~-~~gv~i~~~~~v~~i~~~~~~v~v~~~~----- 148 (502)
T PRK06184 75 RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLA-ELGHRVEFGCELVGFEQDADGVTARVAG----- 148 (502)
T ss_pred eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHH-HCCCEEEeCcEEEEEEEcCCcEEEEEEe-----
Confidence 000 0011222344455555554 5699999999999998877665433211
Q ss_pred ccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 217 MNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 217 ~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
. .+..+++||+||.|+|.+|.
T Consensus 149 --~-----~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 149 --P-----AGEETVRARYLVGADGGRSF 169 (502)
T ss_pred --C-----CCeEEEEeCEEEECCCCchH
Confidence 0 12467999999999997763
No 75
>PRK08244 hypothetical protein; Provisional
Probab=99.35 E-value=2.1e-11 Score=123.17 Aligned_cols=132 Identities=20% Similarity=0.270 Sum_probs=85.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc-------------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE------------- 157 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~------------- 157 (359)
++||+||||||+|+++|+.|++. |++|+||||.+.+.- ......+.....+.|+++|+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~~~~-------~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~ 73 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKETVP-------YSKALTLHPRTLEILDMRGLLERFLEKGRKLPSG 73 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCC-------CcceeEecHHHHHHHHhcCcHHHHHhhcccccce
Confidence 48999999999999999999999 999999999875421 011122333344445544431
Q ss_pred ----------cee---cCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCC
Q 018188 158 ----------YDE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSC 224 (359)
Q Consensus 158 ----------~~~---~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~ 224 (359)
+.. ...+.+..+...+.+.|.+.+ ++.|++++++++++++..+++.+. +.... . +
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~-~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~------~----~ 141 (493)
T PRK08244 74 HFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHA-RSLGVEIFRGAEVLAVRQDGDGVE-VVVRG------P----D 141 (493)
T ss_pred EEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHH-HHcCCeEEeCCEEEEEEEcCCeEE-EEEEe------C----C
Confidence 000 001222334445555555555 467999999999999988777654 22211 0 0
Q ss_pred CCCeEEEcCEEEEcCCCCC
Q 018188 225 MDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 225 g~~~~i~A~~VIlAtGg~s 243 (359)
+ ..+++||+||.|+|..|
T Consensus 142 g-~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 142 G-LRTLTSSYVVGADGAGS 159 (493)
T ss_pred c-cEEEEeCEEEECCCCCh
Confidence 1 25799999999999776
No 76
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.35 E-value=2.1e-11 Score=119.26 Aligned_cols=135 Identities=21% Similarity=0.290 Sum_probs=88.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc-CCc-ceeehhcchhHHHHHHHcCCc----------c
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL-GGQ-LFSAMVVRKPAQRFLDELGVE----------Y 158 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~-~g~-~~~~~~~~~~~~~~l~~~G~~----------~ 158 (359)
.+||+|||||++|+++|+.|++. |++|+|+|+.+... +. .+. -.....+.+...+.|+++|+. +
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~~~~---~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~ 78 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGEPKA---FEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPY 78 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCCccc---CCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCcc
Confidence 38999999999999999999999 99999999875210 00 000 011123344556666666641 0
Q ss_pred e------ecC-------------CeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccC
Q 018188 159 D------EQD-------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 219 (359)
Q Consensus 159 ~------~~~-------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~ 219 (359)
. ... .+.+......+...|++++.+..|++++++++|+++..+++.+. +...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~-v~~~-------- 149 (384)
T PRK08849 79 KRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNR-VTLE-------- 149 (384)
T ss_pred ceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEE-EEEC--------
Confidence 0 000 00111222345556667766567899999999999988776554 3332
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 220 DTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 220 ~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+..+++||.||.|+|..|.
T Consensus 150 ------~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 150 ------SGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred ------CCCEEEeeEEEEecCCCch
Confidence 2368999999999998774
No 77
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.35 E-value=2.4e-11 Score=119.61 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=87.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCC-cceeehhcchhHHHHHHHcCCc----------ce
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGG-QLFSAMVVRKPAQRFLDELGVE----------YD 159 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g-~~~~~~~~~~~~~~~l~~~G~~----------~~ 159 (359)
++||+|||||++|+++|+.|++. |++|+|+|+.+...+...... .......+.....+.|+++|+. +.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence 47999999999999999999999 999999999863211000000 0111122344455566555541 00
Q ss_pred ------ecC--------------CeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccC
Q 018188 160 ------EQD--------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 219 (359)
Q Consensus 160 ------~~~--------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~ 219 (359)
... .+....+...+.+.|.+.+. +.|++++++++++++..+++.+. |...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~-------- 150 (405)
T PRK05714 81 EMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLH-DSDIGLLANARLEQMRRSGDDWL-LTLA-------- 150 (405)
T ss_pred eEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHh-cCCCEEEcCCEEEEEEEcCCeEE-EEEC--------
Confidence 000 00112334456667776665 56999999999999987766543 3332
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 220 DTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 220 ~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+..+++||.||.|+|.++.
T Consensus 151 ------~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 151 ------DGRQLRAPLVVAADGANSA 169 (405)
T ss_pred ------CCCEEEeCEEEEecCCCch
Confidence 2357999999999998764
No 78
>PRK12839 hypothetical protein; Provisional
Probab=99.35 E-value=2e-11 Score=125.25 Aligned_cols=43 Identities=33% Similarity=0.533 Sum_probs=38.8
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL 133 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~ 133 (359)
.++||+|||+|.+|+++|+.|++. |.+|+||||...+||.+..
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~-g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYG-GAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCccccc
Confidence 468999999999999999999999 9999999999888877543
No 79
>PRK07190 hypothetical protein; Provisional
Probab=99.34 E-value=1.6e-11 Score=123.76 Aligned_cols=129 Identities=16% Similarity=0.258 Sum_probs=82.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCC---------cceec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGV---------EYDEQ 161 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~~~ 161 (359)
.+||+||||||+|+++|+.|++. |++|+||||.+.+.... ....+.....++|+.+|+ ++...
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~~~~~g-------ra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~ 76 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDGPLEVG-------RADALNARTLQLLELVDLFDELYPLGKPCNTS 76 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCcccccc-------cceEeCHHHHHHHHhcChHHHHHhhCccceeE
Confidence 48999999999999999999999 99999999997653211 111122233333333332 11000
Q ss_pred -----CC------------------eEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeecc
Q 018188 162 -----DN------------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 218 (359)
Q Consensus 162 -----~~------------------~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~ 218 (359)
+. +........+...|.+++ ++.|++++++++|+++..+++.+... ..
T Consensus 77 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~-~~~Gv~v~~~~~v~~l~~~~~~v~v~-~~------- 147 (487)
T PRK07190 77 SVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKL-KEAGAAVKRNTSVVNIELNQAGCLTT-LS------- 147 (487)
T ss_pred EEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHH-HHCCCEEEeCCEEEEEEEcCCeeEEE-EC-------
Confidence 00 011122233344444455 46799999999999999887765422 21
Q ss_pred CCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 219 HDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 219 ~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+..+++|++||.|+|+.+
T Consensus 148 -------~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 148 -------NGERIQSRYVIGADGSRS 165 (487)
T ss_pred -------CCcEEEeCEEEECCCCCH
Confidence 125799999999999765
No 80
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.34 E-value=2.7e-11 Score=118.45 Aligned_cols=131 Identities=24% Similarity=0.366 Sum_probs=86.1
Q ss_pred cCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc---------ce
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE---------YD 159 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~ 159 (359)
+..+||+|||||++|+++|+.|++. |++|+|||+...+.... . ..+.....+.|+++|+. +.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~~~~~~r--~------~~l~~~s~~~l~~lgl~~~~~~~~~~~~ 75 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEPPYADLR--T------TALLGPSIRFLERLGLWARLAPHAAPLQ 75 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCCCCCCcc--h------hhCcHHHHHHHHHhCchhhhHhhcceee
Confidence 4468999999999999999999999 99999999987542110 0 11112233444444431 00
Q ss_pred ------ec------------------CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeee
Q 018188 160 ------EQ------------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV 215 (359)
Q Consensus 160 ------~~------------------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~ 215 (359)
.. ..+.+..+...+.+.|.+.+.+..++. +++++|+++..+++.+. +...
T Consensus 76 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~-v~~~---- 149 (388)
T PRK07494 76 SMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVT-VTLA---- 149 (388)
T ss_pred EEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEE-EEEC----
Confidence 00 011123344566777777776445566 77999999987776654 4332
Q ss_pred eccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 216 SMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 216 ~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+..+++||.||.|+|..+.
T Consensus 150 ----------~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 150 ----------DGTTLSARLVVGADGRNSP 168 (388)
T ss_pred ----------CCCEEEEeEEEEecCCCch
Confidence 2357999999999998763
No 81
>PRK06126 hypothetical protein; Provisional
Probab=99.34 E-value=2e-11 Score=124.84 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=86.5
Q ss_pred ccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCC---------cc
Q 018188 88 TYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGV---------EY 158 (359)
Q Consensus 88 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~ 158 (359)
.+.++||+|||||++|+++|+.|+++ |++|+|+||...+... .....+.....+.|+++|+ +.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~~~~~~-------~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~ 75 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKDGTAFN-------PKANTTSARSMEHFRRLGIADEVRSAGLPV 75 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCC-------CccccCCHHHHHHHHhcChHHHHHhhcCCc
Confidence 34568999999999999999999999 9999999998643210 0111122223333333332 11
Q ss_pred ee----------cCC----e------------------------EEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEE
Q 018188 159 DE----------QDN----Y------------------------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 200 (359)
Q Consensus 159 ~~----------~~~----~------------------------~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~ 200 (359)
.. .+. + ....+...+...|.+.+.+..+++++++++|+++..
T Consensus 76 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~ 155 (545)
T PRK06126 76 DYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQ 155 (545)
T ss_pred cccCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEE
Confidence 00 000 0 001122334556666665557899999999999988
Q ss_pred eCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 201 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 201 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+++.+... +.+ .. ++...++++|+||.|+|.+|.
T Consensus 156 ~~~~v~v~-~~~------~~---~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 156 DADGVTAT-VED------LD---GGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred CCCeEEEE-EEE------CC---CCcEEEEEEEEEEecCCcchH
Confidence 77766532 211 01 123457999999999997763
No 82
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.33 E-value=3.3e-11 Score=117.50 Aligned_cols=133 Identities=14% Similarity=0.286 Sum_probs=90.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCC---------cce---
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGV---------EYD--- 159 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~--- 159 (359)
+||+|||||++|+++|+.|++. |++|+|+|+.+........ ......+.+...++|+++|+ ++.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~~~~~~~~~---~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 77 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKSVKSPEFFK---DIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIY 77 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCCCCCCccCc---CceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEE
Confidence 6999999999999999999999 9999999987432111000 01222334445555555554 110
Q ss_pred ---ec------------CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCC
Q 018188 160 ---EQ------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSC 224 (359)
Q Consensus 160 ---~~------------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~ 224 (359)
.. ..+.+..+...+.+.|++++.+..+++++++++++++..+++.+. +...
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~------------- 143 (374)
T PRK06617 78 VVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSI-IKFD------------- 143 (374)
T ss_pred EEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEE-EEEc-------------
Confidence 00 012234456778888888887556799999999999988776554 3331
Q ss_pred CCCeEEEcCEEEEcCCCCCC
Q 018188 225 MDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 225 g~~~~i~A~~VIlAtGg~s~ 244 (359)
+ .+++||.||.|+|.+|.
T Consensus 144 -~-~~~~adlvIgADG~~S~ 161 (374)
T PRK06617 144 -D-KQIKCNLLIICDGANSK 161 (374)
T ss_pred -C-CEEeeCEEEEeCCCCch
Confidence 1 37999999999998774
No 83
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.33 E-value=4e-11 Score=117.41 Aligned_cols=135 Identities=20% Similarity=0.308 Sum_probs=87.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCc--ceeehhcchhHHHHHHHcCCc----------c
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQ--LFSAMVVRKPAQRFLDELGVE----------Y 158 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~--~~~~~~~~~~~~~~l~~~G~~----------~ 158 (359)
+|||+|||||++|+++|+.|++. |++|+|+|+..... ...+. ......+.....+.|+++|+. +
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~~~~---~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAAPAP---FDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY 80 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCCCCc---ccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence 58999999999999999999999 99999999975321 00000 011112233344455554431 1
Q ss_pred ee------c-------------CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccC
Q 018188 159 DE------Q-------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 219 (359)
Q Consensus 159 ~~------~-------------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~ 219 (359)
.. . ..+.+..+...+.+.|.+.+.+..|++++++++++++..+++.+. |...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~-------- 151 (391)
T PRK08020 81 RRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWE-LTLA-------- 151 (391)
T ss_pred ceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEE-EEEC--------
Confidence 00 0 011123345567777777776556999999999999987666543 3332
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 220 DTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 220 ~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+..+++||.||.|+|..+.
T Consensus 152 ------~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 152 ------DGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred ------CCCEEEeCEEEEeCCCCch
Confidence 1357999999999998774
No 84
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.33 E-value=2.6e-11 Score=124.75 Aligned_cols=141 Identities=23% Similarity=0.269 Sum_probs=97.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCccee-------------------------------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFS------------------------------- 139 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~------------------------------- 139 (359)
++||||||+|.+|+.+|+.++++ |++|+||||...+||.+...++.+.
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~-g~~v~l~ek~~~~gg~~~~s~g~~~~~~~~~q~~~g~~ds~e~~~~~~~~~~~~~~ 94 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIA-GLKVLLVERTEYVGGTTATSAGTTWIPGTRHGLAVGPDDSLEAARTYLDALVGDRS 94 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCCcccccCceeecCCchHhhhccccccHHHHHHHHHHhhCCCC
Confidence 58999999999999999999999 9999999999888876643322110
Q ss_pred -ehhc------chhHHHHHHH-cCCcceec---CC--------------------------------------eEEE---
Q 018188 140 -AMVV------RKPAQRFLDE-LGVEYDEQ---DN--------------------------------------YVVI--- 167 (359)
Q Consensus 140 -~~~~------~~~~~~~l~~-~G~~~~~~---~~--------------------------------------~~~~--- 167 (359)
.-++ ..+..+||++ .|+.|... .. +...
T Consensus 95 d~~lv~~~~~~s~e~i~wl~~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 174 (578)
T PRK12843 95 PEELRDAFLASGPRAIAFLEANSEVKFRAYASHPDYESDLPGATLRGRALEPLPFDGRKLGADFALIRPPIPEFTVLGGM 174 (578)
T ss_pred cHHHHHHHHhccHHHHHHHHHcCCceeeeCCCCCCCCCCCCCCCCCCCcccCCCCChhhhhhHHHHhccccccccccccc
Confidence 0000 1245688886 67776321 00 0000
Q ss_pred -------------------------------------------echHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCE
Q 018188 168 -------------------------------------------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR 204 (359)
Q Consensus 168 -------------------------------------------~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~ 204 (359)
.....++..|++.+. +.|+++++++.+++|+.++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~~aL~~~~~-~~Gv~i~~~t~v~~Li~~~g~ 253 (578)
T PRK12843 175 MVDRTDVGHLLALTKSWRAFRHAVRLLARYARDRISYARGTRLVMGNALIGRLLYSLR-ARGVRILTQTDVESLETDHGR 253 (578)
T ss_pred cccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHH-hCCCEEEeCCEEEEEEeeCCE
Confidence 012234556666654 689999999999999888889
Q ss_pred EEEEEEceeeeeccCCCCCCCCCeEEEc-CEEEEcCCCCCC
Q 018188 205 VGGVVTNWALVSMNHDTQSCMDPNVMEA-KIVVSSCGHDGP 244 (359)
Q Consensus 205 v~gv~~~~~~~~~~~~~~~~g~~~~i~A-~~VIlAtGg~s~ 244 (359)
|.||.+.. ++...++.| +.||+|||+++.
T Consensus 254 V~GV~~~~-----------~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 254 VIGATVVQ-----------GGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred EEEEEEec-----------CCeEEEEEccceEEECCCCccc
Confidence 99987641 112356886 789999998874
No 85
>PRK06834 hypothetical protein; Provisional
Probab=99.33 E-value=2.7e-11 Score=122.20 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=84.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc---------ce--
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE---------YD-- 159 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~-- 159 (359)
++||+||||||+|+++|+.|++. |++|+||||...+..... ....+.....+.|+++|+. ..
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~~~~~~~------Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~ 75 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPNQELVGS------RAGGLHARTLEVLDQRGIADRFLAQGQVAQVT 75 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCCc------ceeeECHHHHHHHHHcCcHHHHHhcCCccccc
Confidence 48999999999999999999999 999999999875321000 0111233344444444431 00
Q ss_pred --------ec---C--CeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCC
Q 018188 160 --------EQ---D--NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 226 (359)
Q Consensus 160 --------~~---~--~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 226 (359)
.. . .+........+.+.|.+.+. +.|++++++++++++..+++.+. +... +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~-~~gv~i~~~~~v~~v~~~~~~v~-v~~~--------------~ 139 (488)
T PRK06834 76 GFAATRLDISDFPTRHNYGLALWQNHIERILAEWVG-ELGVPIYRGREVTGFAQDDTGVD-VELS--------------D 139 (488)
T ss_pred eeeeEecccccCCCCCCccccccHHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEcCCeEE-EEEC--------------C
Confidence 00 0 01111223344455555554 67999999999999988777554 3322 1
Q ss_pred CeEEEcCEEEEcCCCCCC
Q 018188 227 PNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 227 ~~~i~A~~VIlAtGg~s~ 244 (359)
..+++|++||.|+|.+|.
T Consensus 140 g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 140 GRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred CCEEEeCEEEEecCCCCC
Confidence 247999999999998774
No 86
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.32 E-value=3.8e-12 Score=127.18 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=83.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh-HH---HHHHHcCCcceecC--Ce
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AQ---RFLDELGVEYDEQD--NY 164 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~-~~---~~l~~~G~~~~~~~--~~ 164 (359)
+|||+||||||+|+.||+.|++. |.+|+|+||. .+||.|.+.|+.+.+.+++.. .. +....+|++..... .|
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW 79 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence 58999999999999999999999 9999999996 689999999999887655432 11 22334555432111 11
Q ss_pred EE-EechHHHHHHH---HHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCC
Q 018188 165 VV-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCG 240 (359)
Q Consensus 165 ~~-~~~~~~~~~~L---~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtG 240 (359)
.. ..+...+.+.+ +....++.|++++.++.+. .+++.+ .+. ...+.+|.||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v---~v~---------------~~~~~~d~vIiAtG 138 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTV---EVN---------------GRDYTAPHILIATG 138 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEE---EEC---------------CEEEEeCEEEEecC
Confidence 11 01111122221 2233346799999986432 233332 221 25699999999999
Q ss_pred CCC
Q 018188 241 HDG 243 (359)
Q Consensus 241 g~s 243 (359)
+..
T Consensus 139 s~p 141 (450)
T TIGR01421 139 GKP 141 (450)
T ss_pred CCC
Confidence 764
No 87
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.32 E-value=1.1e-11 Score=117.62 Aligned_cols=153 Identities=22% Similarity=0.353 Sum_probs=101.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcC-----CCCeEEEEeeccCCCCCcccCCcceeehhcchh------------------
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKN-----PSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP------------------ 146 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~-----~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~------------------ 146 (359)
.++||+||||||+||+||++|.+. ..++|+|+||...+||.+..+.. +....+.+.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGav-iep~aldEL~P~wke~~apl~t~vT~d 153 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAV-IEPGALDELLPDWKEDGAPLNTPVTSD 153 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceeccee-eccchhhhhCcchhhcCCccccccccc
Confidence 469999999999999999998651 26899999999999987765432 221111111
Q ss_pred HHHHHHH-cCC------cceecCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe-CCEEEEEEEceeeeecc
Q 018188 147 AQRFLDE-LGV------EYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMN 218 (359)
Q Consensus 147 ~~~~l~~-~G~------~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~-~~~v~gv~~~~~~~~~~ 218 (359)
...+|.. ..+ +++..+ .++..-..++++|-+++. +.|++|+.+..+.++..+ ++.|.|+.+++--+..+
T Consensus 154 ~~~fLt~~~~i~vPv~~pm~NhG--NYvv~L~~~v~wLg~kAE-e~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~ 230 (621)
T KOG2415|consen 154 KFKFLTGKGRISVPVPSPMDNHG--NYVVSLGQLVRWLGEKAE-ELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKD 230 (621)
T ss_pred ceeeeccCceeecCCCcccccCC--cEEEEHHHHHHHHHHHHH-hhCceeccccchhheeEcCCCcEeeEeeccccccCC
Confidence 1111111 000 111112 223345677888888875 799999999999999886 57899998876544433
Q ss_pred CCCCCCC-CCeEEEcCEEEEcCCCCCCCC
Q 018188 219 HDTQSCM-DPNVMEAKIVVSSCGHDGPFG 246 (359)
Q Consensus 219 ~~~~~~g-~~~~i~A~~VIlAtGg~s~~~ 246 (359)
+....+. .+.++.|+..|.|.|.+|.+.
T Consensus 231 G~pKd~FerGme~hak~TifAEGc~G~Ls 259 (621)
T KOG2415|consen 231 GAPKDTFERGMEFHAKVTIFAEGCHGSLS 259 (621)
T ss_pred CCccccccccceecceeEEEeccccchhH
Confidence 3222111 135799999999999988644
No 88
>PTZ00058 glutathione reductase; Provisional
Probab=99.32 E-value=9.2e-12 Score=126.99 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=68.5
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh-HH---HHHHHcCCcceecCCeE
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AQ---RFLDELGVEYDEQDNYV 165 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~-~~---~~l~~~G~~~~~~~~~~ 165 (359)
.+|||+|||||++|+.+|+.|++. |.+|+||||. .+||+|.+.|+++.+.++... .. +....+|+.....-+|.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc-CCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 359999999999999999999999 9999999996 689999999999888766532 12 23345665422111111
Q ss_pred E-EechHHHHHH---HHHHHHhCCCcEEEcce
Q 018188 166 V-IKHAALFTST---IMSKLLARPNVKLFNAV 193 (359)
Q Consensus 166 ~-~~~~~~~~~~---L~~~~~~~~gv~i~~~~ 193 (359)
. ..+...+... .+....++.|++++.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~ 156 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGK 156 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE
Confidence 1 1112222222 23344456799999885
No 89
>PLN02985 squalene monooxygenase
Probab=99.32 E-value=4.9e-11 Score=120.83 Aligned_cols=138 Identities=26% Similarity=0.347 Sum_probs=89.9
Q ss_pred ccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc----------
Q 018188 88 TYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE---------- 157 (359)
Q Consensus 88 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------- 157 (359)
....+||+|||||++|+++|+.|++. |.+|+|+||........ ....+.+...+.|+++|+.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~~~~~~~-------~g~~L~p~g~~~L~~LGl~d~l~~~~~~~ 111 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDLREPERM-------MGEFMQPGGRFMLSKLGLEDCLEGIDAQK 111 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcCCCCccc-------cccccCchHHHHHHHcCCcchhhhccCcc
Confidence 44568999999999999999999999 99999999975321110 0112222333444444431
Q ss_pred ----------------ceecC---C---eEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeee
Q 018188 158 ----------------YDEQD---N---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV 215 (359)
Q Consensus 158 ----------------~~~~~---~---~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~ 215 (359)
|+... . .....+...+.+.|.+++.+..|++++.+ +++++..+++.+.+|....
T Consensus 112 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~--- 187 (514)
T PLN02985 112 ATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKN--- 187 (514)
T ss_pred cccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEc---
Confidence 00000 0 01233456778888888876678999876 6778877777777776531
Q ss_pred eccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 216 SMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 216 ~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
.+|...+++||.||.|+|.+|.
T Consensus 188 -------~dG~~~~~~AdLVVgADG~~S~ 209 (514)
T PLN02985 188 -------SAGEETTALAPLTVVCDGCYSN 209 (514)
T ss_pred -------CCCCEEEEECCEEEECCCCchH
Confidence 1123356889999999997763
No 90
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.32 E-value=6.8e-12 Score=127.50 Aligned_cols=144 Identities=26% Similarity=0.383 Sum_probs=103.2
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc-CCccee-----------------------------
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL-GGQLFS----------------------------- 139 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~-~g~~~~----------------------------- 139 (359)
.++||||||+|.|||.||+.+++. |++|+|+||....+|.+.. .|++..
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~-g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEA-GLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhc-CCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 358999999999999999999999 9999999999876644321 111100
Q ss_pred e-----hh-cchhHHHHHHHcCCcceecCCe---E-------------E-EechHHHHHHHHHHHHhCCCcEEEcceeee
Q 018188 140 A-----MV-VRKPAQRFLDELGVEYDEQDNY---V-------------V-IKHAALFTSTIMSKLLARPNVKLFNAVAAE 196 (359)
Q Consensus 140 ~-----~~-~~~~~~~~l~~~G~~~~~~~~~---~-------------~-~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~ 196 (359)
. +. ..+..+.+|+++|++|...... . . ......++..|.+++.+..+++++.+..+.
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~ 163 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVL 163 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 0 00 0124578999999998654321 0 0 112346778888888866788999999999
Q ss_pred eEEEeCCE-EEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 197 DLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 197 ~l~~~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++..+++. |.|++..+ .. ++....+++|.||+||||.+
T Consensus 164 ~l~~~~~~~v~Gvv~~~------~~---~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 164 DLLVDDGGGVAGVVARD------LR---TGELYVFRAKAVILATGGAG 202 (562)
T ss_pred hheecCCCcEEEEEEEE------ec---CCcEEEEecCcEEEccCCce
Confidence 99987554 88887642 11 23456789999999999988
No 91
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.31 E-value=4.1e-11 Score=122.72 Aligned_cols=44 Identities=27% Similarity=0.516 Sum_probs=39.2
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLG 134 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~ 134 (359)
.++||||||+|++|+++|+.|+++ |++|+||||...+||++...
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~-G~~v~llEk~~~~gG~~~~~ 49 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHR-GLSTVVVEKAPHYGGSTARS 49 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCcccccc
Confidence 368999999999999999999999 99999999998888765443
No 92
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=99.31 E-value=7.1e-11 Score=114.39 Aligned_cols=181 Identities=18% Similarity=0.202 Sum_probs=123.2
Q ss_pred CCeEEEEeeccCCCCCcccCC-cce--------e----------eh-------hcchhHHHHHHHcCCcceecCC---eE
Q 018188 115 SIRVAIIEQSVSPGGGAWLGG-QLF--------S----------AM-------VVRKPAQRFLDELGVEYDEQDN---YV 165 (359)
Q Consensus 115 G~~V~vlEk~~~~GG~~~~~g-~~~--------~----------~~-------~~~~~~~~~l~~~G~~~~~~~~---~~ 165 (359)
|.+|+|+||+..+|......| +.+ . .+ .-..+.++|++++|+++...++ |+
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~grvfP 80 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSSGRVFP 80 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCCCEECC
Confidence 578999999998863322211 100 0 00 0113567999999998876644 34
Q ss_pred EEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC-
Q 018188 166 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP- 244 (359)
Q Consensus 166 ~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~- 244 (359)
....+.++.+.|...+. +.||+++++++|+++ +++. ..+.+.. +...++||.||+|||+.+.
T Consensus 81 ~S~~A~sVv~~L~~~l~-~~gV~i~~~~~V~~i--~~~~-~~v~~~~-------------~~~~~~a~~vIlAtGG~s~p 143 (376)
T TIGR03862 81 VEMKAAPLLRAWLKRLA-EQGVQFHTRHRWIGW--QGGT-LRFETPD-------------GQSTIEADAVVLALGGASWS 143 (376)
T ss_pred CCCCHHHHHHHHHHHHH-HCCCEEEeCCEEEEE--eCCc-EEEEECC-------------CceEEecCEEEEcCCCcccc
Confidence 45678889999888775 789999999999998 3333 2344320 1246999999999999764
Q ss_pred -CCc--hHHHHHHhcCC--cccccccccccccchhhHHh-hhccccCCCeeEeceEEEeecCCCCCCCccceEE-----E
Q 018188 245 -FGA--TGVKRLKSIGM--IDSVPGMKALDMNTAEDAIV-RLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMM-----I 313 (359)
Q Consensus 245 -~~~--~g~~~~~~~g~--~~~~p~~~~~~~~~~~~~~~-~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g~~l-----~ 313 (359)
.|. .|++.++++|| ++++|.++++.++.. .++. .+ .|+.+....+.+ +. . ...|+++ +
T Consensus 144 ~~Gs~g~gy~la~~lGh~i~~~~PaL~pl~~~~~-~~~~~~L-----~Gv~~~~~~~~~--~~-~--~~~GellFTh~Gi 212 (376)
T TIGR03862 144 QLGSDGAWQQVLDQRGVSVAPFAPANCGFLVDWS-AHFASRF-----AGEPLKRVNATA--GT-Q--QTRGEIVITARGL 212 (376)
T ss_pred ccCCCcHHHHHHHHCCCcccCCcCeeceEEccCc-hhhHhhc-----CCCcccceEEEe--CC-e--eEeeeEEEECCCc
Confidence 232 68999999998 899999999887531 1222 24 677776554443 21 1 3458888 9
Q ss_pred ehHHHHHHHH
Q 018188 314 SGQKAAHLAL 323 (359)
Q Consensus 314 sG~~~~~l~l 323 (359)
|||.++++-.
T Consensus 213 SGpavl~lS~ 222 (376)
T TIGR03862 213 EGGLIYALSA 222 (376)
T ss_pred cHHHHHHHHH
Confidence 9999999843
No 93
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.31 E-value=5.3e-11 Score=117.24 Aligned_cols=134 Identities=19% Similarity=0.313 Sum_probs=88.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeec-cCCC-CCcccCCcceeehhcchhHHHHHHHcCCccee--------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQS-VSPG-GGAWLGGQLFSAMVVRKPAQRFLDELGVEYDE-------- 160 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~-~~~G-G~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~-------- 160 (359)
.+||+|||||++|+++|+.|++. |++|+|+|+. +.+. +.. .......+.....+.|+++|+.-..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~~~~~~~~~~----~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~ 78 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQLPEEALNEL----PDVRVSALSRSSEHILRNLGAWQGIEARRAAPY 78 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCCCCcccccCC----CCcceecccHHHHHHHHhCCchhhhhhhhCCcc
Confidence 48999999999999999999999 9999999996 2211 000 0011122344556666666641000
Q ss_pred -------cC---------------CeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeecc
Q 018188 161 -------QD---------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 218 (359)
Q Consensus 161 -------~~---------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~ 218 (359)
.. .+....+...+.+.|++.+.+..|++++++++|+++..+++.+. |...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~-v~~~------- 150 (405)
T PRK08850 79 IAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAW-LTLD------- 150 (405)
T ss_pred cEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEE-EEEC-------
Confidence 00 01112233456677777776556899999999999987766543 4332
Q ss_pred CCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 219 HDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 219 ~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++.+++||.||.|+|..|.
T Consensus 151 -------~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 151 -------NGQALTAKLVVGADGANSW 169 (405)
T ss_pred -------CCCEEEeCEEEEeCCCCCh
Confidence 2357999999999997764
No 94
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.31 E-value=3.4e-11 Score=122.99 Aligned_cols=136 Identities=23% Similarity=0.296 Sum_probs=88.4
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc------------
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE------------ 157 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~------------ 157 (359)
.++||+|||||++|+++|+.|++. |++|+||||...+.... ....+.....+.|+++|+.
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~~~~~~-------ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPTLYDLP-------RAVGIDDEALRVLQAIGLADEVLPHTTPNHG 80 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCC-------ceeeeCHHHHHHHHHcCChhHHHhhcccCCc
Confidence 358999999999999999999999 99999999997653211 1122333444555555431
Q ss_pred --cee-cCC--------------eE--EEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeecc
Q 018188 158 --YDE-QDN--------------YV--VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 218 (359)
Q Consensus 158 --~~~-~~~--------------~~--~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~ 218 (359)
|.. .+. |. ...+...+.+.|.+.+.+..|++++++++|++++.+++.+. +....
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~------ 153 (538)
T PRK06183 81 MRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTD------ 153 (538)
T ss_pred eEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEc------
Confidence 100 000 00 11122344556666665456999999999999998877654 32220
Q ss_pred CCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 219 HDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 219 ~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
.+|+..+++||+||.|+|.+|.
T Consensus 154 ----~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 154 ----ADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred ----CCCCEEEEEEEEEEecCCCchh
Confidence 0122368999999999998764
No 95
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.31 E-value=5.4e-11 Score=115.82 Aligned_cols=134 Identities=21% Similarity=0.386 Sum_probs=86.9
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc----------c----
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE----------Y---- 158 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~----------~---- 158 (359)
||+|||||++|+++|+.|+++ |++|+|+||...++-.. .+.......+.+...+.|+++|+. .
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~~~~~--~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAEAAAT--PGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCccccCC--CCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence 799999999999999999999 99999999998653110 000001112233334444444431 0
Q ss_pred --eec--------------CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCC
Q 018188 159 --DEQ--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ 222 (359)
Q Consensus 159 --~~~--------------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~ 222 (359)
+.. ..+.+..+...+.+.|++.+.+..+++++++++|+++..+++.+. +...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-v~~~----------- 145 (385)
T TIGR01988 78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVE-LTLD----------- 145 (385)
T ss_pred EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeE-EEEC-----------
Confidence 000 001123345567788888776443499999999999987776553 3332
Q ss_pred CCCCCeEEEcCEEEEcCCCCCC
Q 018188 223 SCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 223 ~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+..++.+|.||.|+|..+.
T Consensus 146 ---~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 146 ---DGQQLRARLLVGADGANSK 164 (385)
T ss_pred ---CCCEEEeeEEEEeCCCCCH
Confidence 1356999999999997763
No 96
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.30 E-value=5.9e-11 Score=115.72 Aligned_cols=132 Identities=23% Similarity=0.376 Sum_probs=86.4
Q ss_pred cEEEECCChHHHHHHHHhhcCCC-CeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc---------ce---
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPS-IRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE---------YD--- 159 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G-~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~--- 159 (359)
||+|||||++|+++|+.|+++ | ++|+|+||...+.-. .+.......+.+...+.|+++|+. ..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~~~~~---~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 76 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSPSAAQ---PGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIH 76 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCccccC---CCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEE
Confidence 799999999999999999999 9 999999998754321 010011112223334455555441 00
Q ss_pred --ecC---------------CeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCC
Q 018188 160 --EQD---------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ 222 (359)
Q Consensus 160 --~~~---------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~ 222 (359)
... ...+..+...+.+.|.+.+.+..|++++++++|+++..+++.+. +...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~-v~~~----------- 144 (382)
T TIGR01984 77 VSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVR-VTLD----------- 144 (382)
T ss_pred EEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEE-EEEC-----------
Confidence 000 00122345567778877776446999999999999987766553 3332
Q ss_pred CCCCCeEEEcCEEEEcCCCCC
Q 018188 223 SCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 223 ~~g~~~~i~A~~VIlAtGg~s 243 (359)
+..+++||.||.|+|..+
T Consensus 145 ---~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 145 ---NGQQLRAKLLIAADGANS 162 (382)
T ss_pred ---CCCEEEeeEEEEecCCCh
Confidence 135799999999999765
No 97
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.30 E-value=6.2e-11 Score=118.03 Aligned_cols=137 Identities=18% Similarity=0.364 Sum_probs=86.7
Q ss_pred ccEEEECCChHHHHHHHHhhc----CCCCeEEEEeeccCCCCCc--c--cCC-cceeehhcchhHHHHHHHcCCc-----
Q 018188 92 TDVIVVGAGSAGLSCAYEISK----NPSIRVAIIEQSVSPGGGA--W--LGG-QLFSAMVVRKPAQRFLDELGVE----- 157 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~----~~G~~V~vlEk~~~~GG~~--~--~~g-~~~~~~~~~~~~~~~l~~~G~~----- 157 (359)
|||+|||||++|+++|+.|++ + |++|+|||+.+.+.-.. + ..+ .......+.....++|+++|+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~ 79 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQS 79 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhh
Confidence 699999999999999999998 7 99999999954332100 0 000 0112233445556666665541
Q ss_pred -----c----------------eec---CCeEEEechHHHHHHHHHHHHhCC--CcEEEcceeeeeEEEe-------CCE
Q 018188 158 -----Y----------------DEQ---DNYVVIKHAALFTSTIMSKLLARP--NVKLFNAVAAEDLIVK-------GGR 204 (359)
Q Consensus 158 -----~----------------~~~---~~~~~~~~~~~~~~~L~~~~~~~~--gv~i~~~~~V~~l~~~-------~~~ 204 (359)
+ +.. ..+.+..+...+.+.|.+.+.+.. +++++++++|+++..+ ++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~ 159 (437)
T TIGR01989 80 DRIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW 159 (437)
T ss_pred hcCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence 0 000 001123344566777777776544 6999999999999753 122
Q ss_pred EEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 205 VGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 205 v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+ .|... ++.+++||+||.|+|.+|.
T Consensus 160 v-~v~~~--------------~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 160 V-HITLS--------------DGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred e-EEEEc--------------CCCEEEeeEEEEecCCCCh
Confidence 2 23332 2368999999999998764
No 98
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.30 E-value=6.9e-11 Score=116.08 Aligned_cols=131 Identities=20% Similarity=0.327 Sum_probs=86.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCC-CCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc---------ce--
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNP-SIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE---------YD-- 159 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~-G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~-- 159 (359)
|||+|||||++|+++|+.|++.+ |++|+|+||.+....... .....+.+...+.|+++|+. +.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~-----~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 76 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRD-----PRASAIAAAARRMLEALGVWDEIAPEAQPITDM 76 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCC-----cceEEecHHHHHHHHHCCChhhhhhhcCcccEE
Confidence 79999999999999999999981 399999999864211000 01112233344445544431 00
Q ss_pred -------------------e----cCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeee
Q 018188 160 -------------------E----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS 216 (359)
Q Consensus 160 -------------------~----~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~ 216 (359)
. ...+....+...+.+.|.+.+. +.|++++++++|+++..+++.+. +...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~----- 149 (403)
T PRK07333 77 VITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAE-ALGIDLREATSVTDFETRDEGVT-VTLS----- 149 (403)
T ss_pred EEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEcCCEEE-EEEC-----
Confidence 0 0011123455677788877775 56999999999999987776554 3332
Q ss_pred ccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 217 MNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 217 ~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+..+++||.||.|+|..+
T Consensus 150 ---------~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 150 ---------DGSVLEARLLVAADGARS 167 (403)
T ss_pred ---------CCCEEEeCEEEEcCCCCh
Confidence 235799999999999765
No 99
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.29 E-value=4.2e-11 Score=119.01 Aligned_cols=134 Identities=22% Similarity=0.307 Sum_probs=94.2
Q ss_pred EECCChHHHHHHHHhhcCCCCeEEEEeeccC--CCCCcccCCcce--------------e------eh-----------h
Q 018188 96 VVGAGSAGLSCAYEISKNPSIRVAIIEQSVS--PGGGAWLGGQLF--------------S------AM-----------V 142 (359)
Q Consensus 96 IIGgG~aGl~aA~~La~~~G~~V~vlEk~~~--~GG~~~~~g~~~--------------~------~~-----------~ 142 (359)
|||+|.+|++||+.+++. |.+|+||||... .||.+..++... . .+ +
T Consensus 1 VVG~G~AGl~AA~~Aa~~-Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 79 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRA-GASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL 79 (432)
T ss_pred CCcccHHHHHHHHHHHhC-CCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence 799999999999999999 999999999874 455544321100 0 00 0
Q ss_pred c------chhHHHHHHHcCCcceecC--CeEE-----E--echHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe--CCEE
Q 018188 143 V------RKPAQRFLDELGVEYDEQD--NYVV-----I--KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRV 205 (359)
Q Consensus 143 ~------~~~~~~~l~~~G~~~~~~~--~~~~-----~--~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~--~~~v 205 (359)
+ .....+||+++|++|.... .+.. . .....+.+.|.+.+. +.|++++++++|++|+.+ ++++
T Consensus 80 ~~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~-~~Gv~i~~~~~v~~l~~~~~~g~v 158 (432)
T TIGR02485 80 SRLGIGRGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAE-RLGVEIRYGIAVDRIPPEAFDGAH 158 (432)
T ss_pred HHHHHhcchhHHHHHHhCCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHH-HcCCEEEeCCEEEEEEecCCCCeE
Confidence 0 1245689999999886431 1111 1 123456777777664 789999999999999886 5778
Q ss_pred EEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 206 GGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 206 ~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++|.... +..++.||.||+|||+++.
T Consensus 159 ~gv~~~~-------------~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 159 DGPLTTV-------------GTHRITTQALVLAAGGLGA 184 (432)
T ss_pred EEEEEcC-------------CcEEEEcCEEEEcCCCccc
Confidence 8876531 1257999999999998863
No 100
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.29 E-value=8.6e-11 Score=115.33 Aligned_cols=135 Identities=20% Similarity=0.312 Sum_probs=85.7
Q ss_pred ccEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCC-CCcccCCcceeeh-----------hc-c--hhHHHHHHHcC
Q 018188 92 TDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPG-GGAWLGGQLFSAM-----------VV-R--KPAQRFLDELG 155 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~G-G~~~~~g~~~~~~-----------~~-~--~~~~~~l~~~G 155 (359)
+||+|||||++|+++|++|+++ ||.+|+||||...+| +.++.+.+..... +. . ....++.++++
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 82 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQHG 82 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999984 589999999987554 3333322221110 00 0 01123334444
Q ss_pred CcceecCCeE---------------------------------------------------EEechHHHHHHHHHHHHhC
Q 018188 156 VEYDEQDNYV---------------------------------------------------VIKHAALFTSTIMSKLLAR 184 (359)
Q Consensus 156 ~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~L~~~~~~~ 184 (359)
++|...+.+. -..+...+...|.+.+. +
T Consensus 83 ~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~-~ 161 (393)
T PRK11728 83 IPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQ-A 161 (393)
T ss_pred CCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHH-h
Confidence 4332211100 01234566677776665 6
Q ss_pred CCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 185 PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 185 ~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.|++++++++|.++..+++.+ .|.+. ..++.||.||+|+|.++
T Consensus 162 ~Gv~i~~~~~V~~i~~~~~~~-~V~~~---------------~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 162 RGGEIRLGAEVTALDEHANGV-VVRTT---------------QGEYEARTLINCAGLMS 204 (393)
T ss_pred CCCEEEcCCEEEEEEecCCeE-EEEEC---------------CCEEEeCEEEECCCcch
Confidence 799999999999998766654 34432 23699999999999665
No 101
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.29 E-value=6.8e-11 Score=116.00 Aligned_cols=135 Identities=19% Similarity=0.177 Sum_probs=86.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc-------------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE------------- 157 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~------------- 157 (359)
.+||+|||||++|+++|+.|++. |++|+|+||.+..--. .......+.+...+.|+++|+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~~~~~~-----~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~ 75 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRSREYVE-----GRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGI 75 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCCccccc-----cccceeEECHhHHHHHHHcCChHHHHhcCCccCcE
Confidence 37999999999999999999999 9999999998742100 0001112334455666666651
Q ss_pred -ceecCC-------------eEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEE-eCCEEEEEEEceeeeeccCCCC
Q 018188 158 -YDEQDN-------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGGRVGGVVTNWALVSMNHDTQ 222 (359)
Q Consensus 158 -~~~~~~-------------~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~-~~~~v~gv~~~~~~~~~~~~~~ 222 (359)
+...+. .....+...+.+.|++.+. +.|++++++++++++.. +++.+ .|... .
T Consensus 76 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~-~~gv~v~~~~~v~~i~~~~~~~~-~V~~~-------~--- 143 (392)
T PRK08243 76 ELRFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARL-AAGGPIRFEASDVALHDFDSDRP-YVTYE-------K--- 143 (392)
T ss_pred EEEECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHH-hCCCeEEEeeeEEEEEecCCCce-EEEEE-------c---
Confidence 000000 0011123455667776664 57999999999999876 33333 23331 0
Q ss_pred CCCCCeEEEcCEEEEcCCCCCC
Q 018188 223 SCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 223 ~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+|+..+++||+||.|+|.+|.
T Consensus 144 -~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 144 -DGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred -CCeEEEEEeCEEEECCCCCCc
Confidence 122357999999999998875
No 102
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.29 E-value=7.1e-11 Score=118.34 Aligned_cols=47 Identities=30% Similarity=0.498 Sum_probs=38.3
Q ss_pred cCcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCCcccCC
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGAWLGG 135 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~~~~~g 135 (359)
..++||+|||||++|+++|++|+++ ||.+|+|||++....|.+..++
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~ 69 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNG 69 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccC
Confidence 4458999999999999999999985 5899999999865445555443
No 103
>PLN02507 glutathione reductase
Probab=99.29 E-value=8.9e-12 Score=125.96 Aligned_cols=138 Identities=23% Similarity=0.242 Sum_probs=86.8
Q ss_pred cCcccEEEECCChHHHHHHHHhhcCCCCeEEEEee---------ccCCCCCcccCCcceeehhcchhH----HHHHHHcC
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQ---------SVSPGGGAWLGGQLFSAMVVRKPA----QRFLDELG 155 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk---------~~~~GG~~~~~g~~~~~~~~~~~~----~~~l~~~G 155 (359)
+.+|||+|||+||+|+.+|..|++. |++|+|||+ ...+||.|.+.|+.+.+.++.... .+...++|
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G 101 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANF-GAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYG 101 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 3469999999999999999999999 999999996 356899999999988777655422 23345566
Q ss_pred CcceecC--CeEE-EechHHHH---HHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeE
Q 018188 156 VEYDEQD--NYVV-IKHAALFT---STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV 229 (359)
Q Consensus 156 ~~~~~~~--~~~~-~~~~~~~~---~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~ 229 (359)
+...... +|.. ..+..... ...++.+.+..|++++.+ ++..+ +.+.+. |... ++...+
T Consensus 102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~v--d~~~v~-V~~~------------~g~~~~ 165 (499)
T PLN02507 102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIV--GPNEVE-VTQL------------DGTKLR 165 (499)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEe--cCCEEE-EEeC------------CCcEEE
Confidence 6432111 1110 00111111 112234445678998887 44433 333332 3221 112346
Q ss_pred EEcCEEEEcCCCCC
Q 018188 230 MEAKIVVSSCGHDG 243 (359)
Q Consensus 230 i~A~~VIlAtGg~s 243 (359)
+.+|+||+|||...
T Consensus 166 ~~~d~LIIATGs~p 179 (499)
T PLN02507 166 YTAKHILIATGSRA 179 (499)
T ss_pred EEcCEEEEecCCCC
Confidence 89999999999754
No 104
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.28 E-value=1.2e-10 Score=119.14 Aligned_cols=135 Identities=22% Similarity=0.361 Sum_probs=87.6
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc---------ce-
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE---------YD- 159 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~- 159 (359)
.++||+|||||++|+++|+.|++. |++|+||||...+... .....+.....+.|+++|+. +.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~~~~~~-------~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~ 93 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDDTLSTG-------SRAICFAKRSLEIFDRLGCGERMVDKGVSWNV 93 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCCCCC-------CeEEEEcHHHHHHHHHcCCcHHHHhhCceeec
Confidence 468999999999999999999999 9999999999754221 11122333445555555531 10
Q ss_pred -----ecC-------------Ce--EEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccC
Q 018188 160 -----EQD-------------NY--VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 219 (359)
Q Consensus 160 -----~~~-------------~~--~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~ 219 (359)
... .+ ....+...+.+.|.+.+.+..+++++++++++++..+++.+. +.... .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~-v~~~~------~ 166 (547)
T PRK08132 94 GKVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT-LTVET------P 166 (547)
T ss_pred eeEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE-EEEEC------C
Confidence 000 00 011223345566666666556899999999999988776554 22210 0
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 220 DTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 220 ~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+ ...+++||+||.|+|.++.
T Consensus 167 ~-----g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 167 D-----GPYTLEADWVIACDGARSP 186 (547)
T ss_pred C-----CcEEEEeCEEEECCCCCcH
Confidence 0 1247999999999997763
No 105
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.27 E-value=1e-10 Score=113.13 Aligned_cols=133 Identities=29% Similarity=0.408 Sum_probs=86.1
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEE-eeccCCCCCcccC--Ccceeehh------cchhHHHHHHHcCCcceec--
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAII-EQSVSPGGGAWLG--GQLFSAMV------VRKPAQRFLDELGVEYDEQ-- 161 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vl-Ek~~~~GG~~~~~--g~~~~~~~------~~~~~~~~l~~~G~~~~~~-- 161 (359)
||+|||||.||+.||+.+++. |.+|+|+ ++.+.++.-.... ++.-...+ +.....+..++.+++|...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~-G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~ 79 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM-GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNR 79 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEEST
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcccc
Confidence 899999999999999999999 9999999 4555544321111 01100001 1122334444555555432
Q ss_pred ------CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEE
Q 018188 162 ------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIV 235 (359)
Q Consensus 162 ------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~V 235 (359)
.......+...|...+.+.+...++++++. .+|++|..++++|.||.+. ++..+.+|.|
T Consensus 80 skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e~~~v~GV~~~--------------~g~~~~a~~v 144 (392)
T PF01134_consen 80 SKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVENGKVKGVVTK--------------DGEEIEADAV 144 (392)
T ss_dssp TS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEECTTEEEEEEET--------------TSEEEEECEE
T ss_pred cCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEecCCeEEEEEeC--------------CCCEEecCEE
Confidence 112235666777777777777678999975 5899999999999999885 3478999999
Q ss_pred EEcCCC
Q 018188 236 VSSCGH 241 (359)
Q Consensus 236 IlAtGg 241 (359)
|+|||.
T Consensus 145 VlaTGt 150 (392)
T PF01134_consen 145 VLATGT 150 (392)
T ss_dssp EE-TTT
T ss_pred EEeccc
Confidence 999997
No 106
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.27 E-value=8.5e-11 Score=115.21 Aligned_cols=131 Identities=24% Similarity=0.348 Sum_probs=88.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc---------c---
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE---------Y--- 158 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~--- 158 (359)
..||+|||||++|+++|+.|++. |++|+|+||.+.++.. | ....+.+...+.|+++|+. .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~~~~~~----g---~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~ 75 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAAEIGEI----G---AGIQLGPNAFSALDALGVGEAARQRAVFTDHL 75 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCcccccc----c---ceeeeCchHHHHHHHcCChHHHHhhccCCcce
Confidence 47999999999999999999999 9999999999765321 0 1122333444555555531 0
Q ss_pred ---eec-CC----------------e-EEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeec
Q 018188 159 ---DEQ-DN----------------Y-VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 217 (359)
Q Consensus 159 ---~~~-~~----------------~-~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~ 217 (359)
+.. +. . ....+...+.+.|++.+.+..+++++++++++++..+++.+. +...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~------ 148 (396)
T PRK08163 76 TMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVT-VFDQ------ 148 (396)
T ss_pred EEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceE-EEEc------
Confidence 000 00 0 112345566777777776555699999999999987666544 3332
Q ss_pred cCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 218 NHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 218 ~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++.++.||.||.|+|.++.
T Consensus 149 --------~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 149 --------QGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred --------CCCEEecCEEEECCCcChH
Confidence 2357999999999997764
No 107
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.27 E-value=9.7e-11 Score=113.59 Aligned_cols=42 Identities=36% Similarity=0.595 Sum_probs=35.9
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccC
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLG 134 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~ 134 (359)
+||+|||||++|+++|++|+++ |.+|+|||+.....|.++.+
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~~~gaS~~~ 42 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSRAQGASVRN 42 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCccccc
Confidence 5999999999999999999999 99999999987544544433
No 108
>PRK06370 mercuric reductase; Validated
Probab=99.27 E-value=5.5e-11 Score=119.26 Aligned_cols=130 Identities=22% Similarity=0.232 Sum_probs=82.4
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhH-H---HHHHHcCCccee--cCC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-Q---RFLDELGVEYDE--QDN 163 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~-~---~~l~~~G~~~~~--~~~ 163 (359)
.+|||+|||+||+|+.+|+.|++. |.+|+|+|+. .+||+|.+.|+.+.+.++.... . +....+|++... ..+
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVD 81 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccC
Confidence 359999999999999999999999 9999999996 6899999889888776654321 1 222345654321 111
Q ss_pred eEEE-echHH----HHHHHHHHHHhCC-CcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEE
Q 018188 164 YVVI-KHAAL----FTSTIMSKLLARP-NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVS 237 (359)
Q Consensus 164 ~~~~-~~~~~----~~~~L~~~~~~~~-gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIl 237 (359)
|... .+... +...+...+ ++. |++++.++.+. .++..+. +. ..++.+|.||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~gv~v~~g~~~~---~~~~~v~---v~---------------~~~~~~d~lVi 139 (463)
T PRK06370 82 FKAVMARKRRIRARSRHGSEQWL-RGLEGVDVFRGHARF---ESPNTVR---VG---------------GETLRAKRIFI 139 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-hcCCCcEEEEEEEEE---ccCCEEE---EC---------------cEEEEeCEEEE
Confidence 1100 01111 112222223 344 99999886542 2333332 21 25689999999
Q ss_pred cCCCCC
Q 018188 238 SCGHDG 243 (359)
Q Consensus 238 AtGg~s 243 (359)
|||...
T Consensus 140 ATGs~p 145 (463)
T PRK06370 140 NTGARA 145 (463)
T ss_pred cCCCCC
Confidence 999754
No 109
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.27 E-value=8.1e-11 Score=117.91 Aligned_cols=52 Identities=37% Similarity=0.523 Sum_probs=46.5
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehh
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV 142 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~ 142 (359)
.+|||+|||||++|+.+|+.|++. |.+|+|||+...+||.|+..|+.+...+
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~~GG~~~~~gcipsk~l 55 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRNVGGGCTHTGTIPSKAL 55 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccccccccccccCCCCHHHH
Confidence 459999999999999999999999 9999999998889999988887766543
No 110
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.25 E-value=3.1e-11 Score=113.70 Aligned_cols=136 Identities=28% Similarity=0.330 Sum_probs=95.9
Q ss_pred cCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc-----------
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE----------- 157 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~----------- 157 (359)
+..+||+|||||.+|.+.|+.|++. |.+|.||||.-.- ...+-..+.++.....|.++|+.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERDl~E-------PdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v 114 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKD-GRRVHVIERDLSE-------PDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRV 114 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhC-CcEEEEEeccccc-------chHHHHHhcCcchhHHHHHhCHHHHhhcccceEe
Confidence 4468999999999999999999999 9999999997421 11111122333333444555542
Q ss_pred ---------------ceec----CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeecc
Q 018188 158 ---------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 218 (359)
Q Consensus 158 ---------------~~~~----~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~ 218 (359)
|... +.-....|.+.|.+.|.+++...+|+++..+ .|.++..+++.|.||...+
T Consensus 115 ~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~gvvkGV~yk~------ 187 (509)
T KOG1298|consen 115 TGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEEGVVKGVTYKN------ 187 (509)
T ss_pred eeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhccCeEEeEEEec------
Confidence 1100 0011234667899999999988999999888 7888988889999998752
Q ss_pred CCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 219 HDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 219 ~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
. .++..+..|...|+|+|-++
T Consensus 188 k----~gee~~~~ApLTvVCDGcfS 208 (509)
T KOG1298|consen 188 K----EGEEVEAFAPLTVVCDGCFS 208 (509)
T ss_pred C----CCceEEEecceEEEecchhH
Confidence 2 22347788999999999776
No 111
>PRK07236 hypothetical protein; Provisional
Probab=99.25 E-value=1.1e-10 Score=114.17 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=84.8
Q ss_pred cCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceec-----CC
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQ-----DN 163 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~-----~~ 163 (359)
+...||+|||||++|+++|+.|++. |++|+|+||.+.+-. ..+ ....+.+...+.|+++|+.-... ..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~--~~g----~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~ 76 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSPTELD--GRG----AGIVLQPELLRALAEAGVALPADIGVPSRE 76 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCcC--CCC----ceeEeCHHHHHHHHHcCCCcccccccCccc
Confidence 3458999999999999999999999 999999999864311 001 11223455667788777632110 00
Q ss_pred eEE----------------EechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCC
Q 018188 164 YVV----------------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDP 227 (359)
Q Consensus 164 ~~~----------------~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~ 227 (359)
..+ ..+...+.+.|.+. -.+++++++++|+++..+++.+. +... ++
T Consensus 77 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~i~~~~~v~~i~~~~~~v~-v~~~--------------~g 138 (386)
T PRK07236 77 RIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAA---FPAERYHLGETLVGFEQDGDRVT-ARFA--------------DG 138 (386)
T ss_pred eEEEeCCCCEeeccCCCccccCHHHHHHHHHHh---CCCcEEEcCCEEEEEEecCCeEE-EEEC--------------CC
Confidence 000 01112233333322 24578999999999988776654 3332 23
Q ss_pred eEEEcCEEEEcCCCCCC
Q 018188 228 NVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 228 ~~i~A~~VIlAtGg~s~ 244 (359)
.+++||.||.|+|.+|.
T Consensus 139 ~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 139 RRETADLLVGADGGRST 155 (386)
T ss_pred CEEEeCEEEECCCCCch
Confidence 67999999999998774
No 112
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.24 E-value=4.6e-11 Score=119.91 Aligned_cols=136 Identities=21% Similarity=0.262 Sum_probs=84.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhH-HH-----HHHHcCCcceecCCe
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-QR-----FLDELGVEYDEQDNY 164 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~-~~-----~l~~~G~~~~~~~~~ 164 (359)
+|||+|||+||+|+.||+.|++. |.+|+|||+...+||.|.+.|+++.+.+..... .+ .+..+|+.....-++
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 81 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL 81 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence 49999999999999999999999 999999998778999999999998876654321 11 133456543211111
Q ss_pred EE-EechHHHHH---HHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCC
Q 018188 165 VV-IKHAALFTS---TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCG 240 (359)
Q Consensus 165 ~~-~~~~~~~~~---~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtG 240 (359)
.. ..+...... .-.+...+..+++++.+. . .+. +++++. |... ++...++++|.||+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~-~~~~v~-v~~~------------~g~~~~~~~d~lVIATG 145 (466)
T PRK06115 82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLD-GVGKVV-VKAE------------DGSETQLEAKDIVIATG 145 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEc-cCCEEE-EEcC------------CCceEEEEeCEEEEeCC
Confidence 10 001111111 112333446689888774 1 232 233432 2221 11225799999999999
Q ss_pred CCC
Q 018188 241 HDG 243 (359)
Q Consensus 241 g~s 243 (359)
...
T Consensus 146 s~p 148 (466)
T PRK06115 146 SEP 148 (466)
T ss_pred CCC
Confidence 764
No 113
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.24 E-value=1.6e-11 Score=115.60 Aligned_cols=133 Identities=18% Similarity=0.298 Sum_probs=88.5
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh-HH-----HHHHHcCCcceecCC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AQ-----RFLDELGVEYDEQDN 163 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~-~~-----~~l~~~G~~~~~~~~ 163 (359)
.+|||+|||+||.|..||+.+++. |++.+++|++..+||+|.+.|+++++.++... .. +.+++.|+..... .
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~-~ 115 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV-S 115 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh-cceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce-e
Confidence 469999999999999999999999 99999999999999999999999987766532 11 2455566654311 0
Q ss_pred eEE---Eech----HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEE
Q 018188 164 YVV---IKHA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVV 236 (359)
Q Consensus 164 ~~~---~~~~----~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VI 236 (359)
+.+ ..+. ..+... ++.+.++++|+++.+. .-..+.++|. +.. .+|....+.+|++|
T Consensus 116 ~dl~~~~~~k~~~vk~Lt~g-i~~lfkknkV~~~kG~---gsf~~p~~V~-v~k------------~dg~~~ii~aKnIi 178 (506)
T KOG1335|consen 116 LDLQAMMKAKDNAVKQLTGG-IENLFKKNKVTYVKGF---GSFLDPNKVS-VKK------------IDGEDQIIKAKNII 178 (506)
T ss_pred cCHHHHHHHHHHHHHHHhhH-HHHHhhhcCeEEEeee---EeecCCceEE-Eec------------cCCCceEEeeeeEE
Confidence 110 0111 122222 2334456778877664 2222344443 111 13356889999999
Q ss_pred EcCCC
Q 018188 237 SSCGH 241 (359)
Q Consensus 237 lAtGg 241 (359)
+|||.
T Consensus 179 iATGS 183 (506)
T KOG1335|consen 179 IATGS 183 (506)
T ss_pred EEeCC
Confidence 99995
No 114
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.24 E-value=1.7e-10 Score=113.08 Aligned_cols=140 Identities=19% Similarity=0.291 Sum_probs=81.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeec-cCCCCCcccCCccee----ehhcchhHH-HHHHHc------CCcc-
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQS-VSPGGGAWLGGQLFS----AMVVRKPAQ-RFLDEL------GVEY- 158 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~-~~~GG~~~~~g~~~~----~~~~~~~~~-~~l~~~------G~~~- 158 (359)
|||+||||||+|+++|+.|++. |++|+|+|+. ..+. ..++.+.. .+-+..... ..+... +..+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~~~~~~---~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 76 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERALSNIK---PCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIK 76 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCCCcC---cCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceee
Confidence 6999999999999999999999 9999999997 2221 11111111 110000000 000000 0000
Q ss_pred ---eecCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEE
Q 018188 159 ---DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIV 235 (359)
Q Consensus 159 ---~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~V 235 (359)
.....+....+...+.+.|.+++. +.|++++.. +|+++..+++.+. +.... .+....+...+++|++|
T Consensus 77 ~~~~~~~~~~~~~~r~~fd~~L~~~a~-~~G~~v~~~-~v~~v~~~~~~~~-v~~~~------~~~~~~~~~~~i~a~~V 147 (388)
T TIGR02023 77 VTIPSEDGYVGMVRREVFDSYLRERAQ-KAGAELIHG-LFLKLERDRDGVT-LTYRT------PKKGAGGEKGSVEADVV 147 (388)
T ss_pred eccCCCCCceEeeeHHHHHHHHHHHHH-hCCCEEEee-EEEEEEEcCCeEE-EEEEe------ccccCCCcceEEEeCEE
Confidence 001123223456677777777775 579999765 6888877766543 33321 00000112367999999
Q ss_pred EEcCCCCCC
Q 018188 236 VSSCGHDGP 244 (359)
Q Consensus 236 IlAtGg~s~ 244 (359)
|.|+|..+.
T Consensus 148 I~AdG~~S~ 156 (388)
T TIGR02023 148 IGADGANSP 156 (388)
T ss_pred EECCCCCcH
Confidence 999997764
No 115
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.24 E-value=3.1e-10 Score=111.92 Aligned_cols=41 Identities=20% Similarity=0.507 Sum_probs=35.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCC-CCccc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPG-GGAWL 133 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~G-G~~~~ 133 (359)
+||+|||||.+|+++|++|++. |.+|+||||+..+| |.++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~~~~~as~~ 43 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRYAAMETSFA 43 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCCCcCcccc
Confidence 5999999999999999999999 99999999997543 34433
No 116
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.23 E-value=3.3e-10 Score=110.33 Aligned_cols=134 Identities=22% Similarity=0.212 Sum_probs=83.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCC--CCcccCCcceeeh----------------------------
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPG--GGAWLGGQLFSAM---------------------------- 141 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~G--G~~~~~g~~~~~~---------------------------- 141 (359)
+||+|||||++|+++|++|+++ |.+|+|||+...++ +.++..+..+...
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~ 79 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKL 79 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCee
Confidence 5999999999999999999999 99999999976542 2222111111000
Q ss_pred -------hc--c-----hhHHHHHHHcCCcceec---------------CCe-EE------EechHHHHHHHHHHHHhCC
Q 018188 142 -------VV--R-----KPAQRFLDELGVEYDEQ---------------DNY-VV------IKHAALFTSTIMSKLLARP 185 (359)
Q Consensus 142 -------~~--~-----~~~~~~l~~~G~~~~~~---------------~~~-~~------~~~~~~~~~~L~~~~~~~~ 185 (359)
.+ . ....+.+.+.|++.... ..+ .+ ..++..+...|.+.+. +.
T Consensus 80 ~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~-~~ 158 (380)
T TIGR01377 80 HRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAE-AH 158 (380)
T ss_pred EeecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHH-Hc
Confidence 00 0 00112233344322100 000 00 2244566677666654 67
Q ss_pred CcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 186 NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 186 gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
|++++.+++|.++..+++.+. |.+. ..++.|+.||+|+|+++
T Consensus 159 g~~~~~~~~V~~i~~~~~~~~-v~~~---------------~~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 159 GATVRDGTKVVEIEPTELLVT-VKTT---------------KGSYQANKLVVTAGAWT 200 (380)
T ss_pred CCEEECCCeEEEEEecCCeEE-EEeC---------------CCEEEeCEEEEecCcch
Confidence 999999999999987766553 4432 24699999999999764
No 117
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.23 E-value=1.9e-10 Score=113.42 Aligned_cols=58 Identities=29% Similarity=0.407 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 170 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 170 ~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+..+...|.+.+. +.|++|+++++|+++..+++++.+|.+. ..++.||.||+|+|.++
T Consensus 200 p~~~~~~l~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~v~t~---------------~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAE-QLGVKFRFNTPVDGLLVEGGRITGVQTG---------------GGVITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCEEEEEEeC---------------CcEEeCCEEEECCCcch
Confidence 3456667666664 6899999999999998877777666553 25799999999999765
No 118
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.22 E-value=3.3e-10 Score=110.85 Aligned_cols=136 Identities=23% Similarity=0.291 Sum_probs=82.0
Q ss_pred cccEEEECCChHHHHHHHHhhcC--CCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCC---------cce
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKN--PSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGV---------EYD 159 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~--~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~ 159 (359)
.+||+|||||++|+++|+.|++. .|++|+|+||...... ... +.......+.....+.++++|+ +..
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~-~~~-~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~ 80 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESD-AHP-GFDARAIALAAGTCQQLARLGVWQALADCATPIT 80 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccc-cCC-CCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence 48999999999999999999774 2899999999632210 000 0000011111222333333333 100
Q ss_pred e-----cC---------------CeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccC
Q 018188 160 E-----QD---------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 219 (359)
Q Consensus 160 ~-----~~---------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~ 219 (359)
. .. ......+...+.+.|.+.+.+..|++++++++|+++..+++.+. +...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~-v~~~-------- 151 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVR-VTLD-------- 151 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEE-EEEC--------
Confidence 0 00 00112233455566676666557899999999999987666554 4332
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 220 DTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 220 ~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+..++++|.||.|+|.++
T Consensus 152 ------~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 152 ------DGETLTGRLLVAADGSHS 169 (395)
T ss_pred ------CCCEEEeCEEEEecCCCh
Confidence 135789999999999776
No 119
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.22 E-value=4.8e-11 Score=119.90 Aligned_cols=136 Identities=19% Similarity=0.279 Sum_probs=86.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh-H---HHHHHHcCCcceec-CCeE
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-A---QRFLDELGVEYDEQ-DNYV 165 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~-~---~~~l~~~G~~~~~~-~~~~ 165 (359)
+|||+|||||++|+.+|..|++. |++|+|||+.+.+||.|++.|+++.+.++... . .+.+..+|+.+... -+|.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 59999999999999999999999 99999999987899999999998887655421 1 23344566654321 0111
Q ss_pred EE-echHHHHHHH---HHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCC
Q 018188 166 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGH 241 (359)
Q Consensus 166 ~~-~~~~~~~~~L---~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg 241 (359)
.. .+.....+.+ +....+..|++++.++ +.- .+.+.+. |... ++...++.+|+||+|||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~--~~~~~v~-v~~~------------~g~~~~~~~d~lViATGs 146 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKF--TGGNTLE-VTGE------------DGKTTVIEFDNAIIAAGS 146 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--ccCCEEE-EecC------------CCceEEEEcCEEEEeCCC
Confidence 00 0111111111 2233456799999874 222 2334332 2221 112257999999999997
Q ss_pred CC
Q 018188 242 DG 243 (359)
Q Consensus 242 ~s 243 (359)
..
T Consensus 147 ~p 148 (471)
T PRK06467 147 RP 148 (471)
T ss_pred CC
Confidence 64
No 120
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.22 E-value=1.2e-10 Score=118.19 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=36.8
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
..|||||||||+.|+++|+.|+++ |++|+||||++..+|++
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~r-Gl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGR-GLSVLLCEQDDLASATS 45 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCcc
Confidence 459999999999999999999999 99999999987665554
No 121
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.21 E-value=3.9e-10 Score=109.64 Aligned_cols=135 Identities=20% Similarity=0.261 Sum_probs=84.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCC--CCcccCCcceee----------------------------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPG--GGAWLGGQLFSA---------------------------- 140 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~G--G~~~~~g~~~~~---------------------------- 140 (359)
++||+|||||++|+++|++|++. |.+|+||||+...+ +.+.....+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~ 81 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGE 81 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999999999 99999999986542 111111000000
Q ss_pred --------hhc--c-----hhHHHHHHHcCCcceec--------------CC--eEE------EechHHHHHHHHHHHHh
Q 018188 141 --------MVV--R-----KPAQRFLDELGVEYDEQ--------------DN--YVV------IKHAALFTSTIMSKLLA 183 (359)
Q Consensus 141 --------~~~--~-----~~~~~~l~~~G~~~~~~--------------~~--~~~------~~~~~~~~~~L~~~~~~ 183 (359)
+.+ . ....+.++++|++.... .. ... ..++..+...+.+.+.
T Consensus 82 ~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~- 160 (376)
T PRK11259 82 PLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLAR- 160 (376)
T ss_pred ccEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHH-
Confidence 000 0 01123334455432210 00 000 1234556666666665
Q ss_pred CCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 184 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 184 ~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+.|++++++++|+++..+++.+. |.+. ..++.||.||+|+|.++
T Consensus 161 ~~gv~i~~~~~v~~i~~~~~~~~-v~~~---------------~g~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 161 EAGAELLFNEPVTAIEADGDGVT-VTTA---------------DGTYEAKKLVVSAGAWV 204 (376)
T ss_pred HCCCEEECCCEEEEEEeeCCeEE-EEeC---------------CCEEEeeEEEEecCcch
Confidence 57999999999999988766443 4432 23689999999999765
No 122
>PRK06847 hypothetical protein; Provisional
Probab=99.21 E-value=2.9e-10 Score=110.59 Aligned_cols=130 Identities=20% Similarity=0.206 Sum_probs=83.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCC---------ccee-
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGV---------EYDE- 160 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~~- 160 (359)
..||+|||||++|+++|+.|++. |++|+|+|+...+... +.+ ..+.+...+.|+++|+ +...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~~~~~---g~g----~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~ 75 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPEWRVY---GAG----ITLQGNALRALRELGVLDECLEAGFGFDGV 75 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCccC---Cce----eeecHHHHHHHHHcCCHHHHHHhCCCccce
Confidence 36999999999999999999999 9999999998754211 000 1112222333333332 1110
Q ss_pred -----cCC--------------e--EEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccC
Q 018188 161 -----QDN--------------Y--VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 219 (359)
Q Consensus 161 -----~~~--------------~--~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~ 219 (359)
.+. + ....+...+.+.|.+.+. +.|++++++++|+++..+++.+. +...
T Consensus 76 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~~~-v~~~-------- 145 (375)
T PRK06847 76 DLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAAR-AAGADVRLGTTVTAIEQDDDGVT-VTFS-------- 145 (375)
T ss_pred EEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHH-HhCCEEEeCCEEEEEEEcCCEEE-EEEc--------
Confidence 000 0 011223455666666664 67999999999999987666543 3332
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 220 DTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 220 ~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+..++.+|.||.|+|.++.
T Consensus 146 ------~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 146 ------DGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred ------CCCEEEcCEEEECcCCCcc
Confidence 2357999999999998774
No 123
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.21 E-value=3.1e-10 Score=114.91 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=38.7
Q ss_pred cCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL 133 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~ 133 (359)
+.++||+|||||+.|+++|+.|+++ |++|+||||+...+|++..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~r-G~~V~LlEk~d~~~GtS~~ 47 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGR-GLKVLLCEKDDLAQGTSSR 47 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCCCCCCchh
Confidence 3459999999999999999999999 9999999999876666543
No 124
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.21 E-value=4.8e-11 Score=119.15 Aligned_cols=131 Identities=24% Similarity=0.322 Sum_probs=83.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh-HHHHH---HHcCCcceec-CCeE
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AQRFL---DELGVEYDEQ-DNYV 165 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~-~~~~l---~~~G~~~~~~-~~~~ 165 (359)
+|||+||||||+|+.||+.|++. |.+|+|+|+. .+||.|...|+.+.+.++... ..+.+ ..+|+..... -+|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHH
Confidence 59999999999999999999999 9999999995 789999999999887665542 22222 3355432211 0110
Q ss_pred E-Eech----HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCC
Q 018188 166 V-IKHA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCG 240 (359)
Q Consensus 166 ~-~~~~----~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtG 240 (359)
. ..+. ..+... ++...++.|++++.+ ++..+ +.+.+. +.. +..++++|+||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~l~~~gV~~~~g-~~~~v--~~~~v~-v~~---------------~g~~~~~d~lIiATG 139 (446)
T TIGR01424 80 KLLQKKDDEIARLSGL-YKRLLANAGVELLEG-RARLV--GPNTVE-VLQ---------------DGTTYTAKKILIAVG 139 (446)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhCCcEEEEE-EEEEe--cCCEEE-Eec---------------CCeEEEcCEEEEecC
Confidence 0 0011 112222 233344679999877 55444 223322 111 135799999999999
Q ss_pred CCC
Q 018188 241 HDG 243 (359)
Q Consensus 241 g~s 243 (359)
...
T Consensus 140 s~p 142 (446)
T TIGR01424 140 GRP 142 (446)
T ss_pred CcC
Confidence 764
No 125
>PLN02546 glutathione reductase
Probab=99.20 E-value=2.2e-11 Score=124.18 Aligned_cols=132 Identities=18% Similarity=0.252 Sum_probs=85.7
Q ss_pred cCcccEEEECCChHHHHHHHHhhcCCCCeEEEEee---------ccCCCCCcccCCcceeehhcchh-HHHH---HHHcC
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQ---------SVSPGGGAWLGGQLFSAMVVRKP-AQRF---LDELG 155 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk---------~~~~GG~~~~~g~~~~~~~~~~~-~~~~---l~~~G 155 (359)
..+|||+|||+|++|+.+|..|++. |.+|+|+|+ ...+||.|.+.|+++.+.++... ..+. ...+|
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g 155 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNF-GASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG 155 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence 3469999999999999999999999 999999996 24679999999999988776532 2222 33466
Q ss_pred Ccceec--CCeEEE-echHH----HHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCe
Q 018188 156 VEYDEQ--DNYVVI-KHAAL----FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPN 228 (359)
Q Consensus 156 ~~~~~~--~~~~~~-~~~~~----~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~ 228 (359)
+.+... -+|... .+... +... +...+++.|++++.+ +++.+ +...+ .+. ..
T Consensus 156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~-~~~~l~~~gV~~i~G-~a~~v--d~~~V---~v~---------------G~ 213 (558)
T PLN02546 156 WKYETEPKHDWNTLIANKNAELQRLTGI-YKNILKNAGVTLIEG-RGKIV--DPHTV---DVD---------------GK 213 (558)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEEEe-EEEEc--cCCEE---EEC---------------CE
Confidence 643211 112111 11111 2222 233344678999876 33333 22322 221 25
Q ss_pred EEEcCEEEEcCCCCC
Q 018188 229 VMEAKIVVSSCGHDG 243 (359)
Q Consensus 229 ~i~A~~VIlAtGg~s 243 (359)
++.+|.||+|||...
T Consensus 214 ~~~~D~LVIATGs~p 228 (558)
T PLN02546 214 LYTARNILIAVGGRP 228 (558)
T ss_pred EEECCEEEEeCCCCC
Confidence 699999999999765
No 126
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.20 E-value=6.6e-11 Score=118.96 Aligned_cols=137 Identities=15% Similarity=0.302 Sum_probs=85.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh-HHHH---HHHcCCcceec-CCeE
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AQRF---LDELGVEYDEQ-DNYV 165 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~-~~~~---l~~~G~~~~~~-~~~~ 165 (359)
.|||+|||||++|+.+|+.|++. |.+|+|+|+. .+||.|...|+++.+.++... ..+. ...+|+..... -+|.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 59999999999999999999999 9999999996 789999999998887665432 1222 23455432211 0111
Q ss_pred EE-echHHHHHHH---HHHHHhCCCcEEEcceeeeeEEEe-----CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEE
Q 018188 166 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVK-----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVV 236 (359)
Q Consensus 166 ~~-~~~~~~~~~L---~~~~~~~~gv~i~~~~~V~~l~~~-----~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VI 236 (359)
.. .+...+.+.+ ...+.++.|++++.+ ++..+..+ ++.+. |... ++...++.+|+||
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~-v~~~------------~g~~~~~~~d~lV 147 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVS-VETE------------TGENEMIIPENLL 147 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEE-EEeC------------CCceEEEEcCEEE
Confidence 10 1111122222 223345679999988 44444222 11322 3221 1122579999999
Q ss_pred EcCCCCC
Q 018188 237 SSCGHDG 243 (359)
Q Consensus 237 lAtGg~s 243 (359)
+|||...
T Consensus 148 iATGs~p 154 (472)
T PRK05976 148 IATGSRP 154 (472)
T ss_pred EeCCCCC
Confidence 9999765
No 127
>PRK07588 hypothetical protein; Provisional
Probab=99.20 E-value=3.7e-10 Score=110.69 Aligned_cols=128 Identities=15% Similarity=0.176 Sum_probs=81.9
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCC---------ccee---
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGV---------EYDE--- 160 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~~--- 160 (359)
||+|||||++|+++|+.|+++ |++|+|+||.+.... .|. ...+.....+.|+++|+ ++..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~----~g~---~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~ 73 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAPELRT----GGY---MVDFWGVGYEVAKRMGITDQLREAGYQIEHVRS 73 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCCCccC----CCe---EEeccCcHHHHHHHcCCHHHHHhccCCccceEE
Confidence 799999999999999999999 999999999865421 010 01111222334444432 1100
Q ss_pred ---cCC----------------eEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCC
Q 018188 161 ---QDN----------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT 221 (359)
Q Consensus 161 ---~~~----------------~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~ 221 (359)
.+. .....+...+.+.|++.+ ..+++++++++|+++..+++.+. +...
T Consensus 74 ~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~--~~~v~i~~~~~v~~i~~~~~~v~-v~~~---------- 140 (391)
T PRK07588 74 VDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI--DGQVETIFDDSIATIDEHRDGVR-VTFE---------- 140 (391)
T ss_pred EcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhh--hcCeEEEeCCEEeEEEECCCeEE-EEEC----------
Confidence 000 011233445556665544 34799999999999988777654 3332
Q ss_pred CCCCCCeEEEcCEEEEcCCCCCCC
Q 018188 222 QSCMDPNVMEAKIVVSSCGHDGPF 245 (359)
Q Consensus 222 ~~~g~~~~i~A~~VIlAtGg~s~~ 245 (359)
++.++++|.||.|+|.+|..
T Consensus 141 ----~g~~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 141 ----RGTPRDFDLVIGADGLHSHV 160 (391)
T ss_pred ----CCCEEEeCEEEECCCCCccc
Confidence 23568999999999987754
No 128
>PRK11445 putative oxidoreductase; Provisional
Probab=99.19 E-value=5.1e-10 Score=108.30 Aligned_cols=132 Identities=18% Similarity=0.222 Sum_probs=84.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCC--CCcccCCcceeehhcchhHHHHHHHcCCcceec--------
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPG--GGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQ-------- 161 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~G--G~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~-------- 161 (359)
|||+||||||+|+++|+.|++. ++|+|+||.+.++ +.....| ..+.+...+.|+++|+.....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~~~~~~~~~~~~g-----~~l~~~~~~~L~~lgl~~~~~~~~~~~~~ 74 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKHQCGTEGFSKPCG-----GLLAPDAQKSFAKDGLTLPKDVIANPQIF 74 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCCccccccccCcCc-----CccCHHHHHHHHHcCCCCCcceeeccccc
Confidence 7999999999999999999886 8999999987542 1111111 123445666777777631100
Q ss_pred --------C----C---eEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCC
Q 018188 162 --------D----N---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 226 (359)
Q Consensus 162 --------~----~---~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 226 (359)
. . .....+...+.+.|.+ .. ..|+++++++.+.++..+++.+. +... . ++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~-~~-~~gv~v~~~~~v~~i~~~~~~~~-v~~~-------~----~g~ 140 (351)
T PRK11445 75 AVKTIDLANSLTRNYQRSYINIDRHKFDLWLKS-LI-PASVEVYHNSLCRKIWREDDGYH-VIFR-------A----DGW 140 (351)
T ss_pred eeeEecccccchhhcCCCcccccHHHHHHHHHH-HH-hcCCEEEcCCEEEEEEEcCCEEE-EEEe-------c----CCc
Confidence 0 0 0012334455555544 33 56899999999999987766543 3221 0 112
Q ss_pred CeEEEcCEEEEcCCCCCC
Q 018188 227 PNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 227 ~~~i~A~~VIlAtGg~s~ 244 (359)
..+++|++||.|+|..|.
T Consensus 141 ~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 141 EQHITARYLVGADGANSM 158 (351)
T ss_pred EEEEEeCEEEECCCCCcH
Confidence 247999999999998774
No 129
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.19 E-value=5.3e-10 Score=110.11 Aligned_cols=137 Identities=23% Similarity=0.269 Sum_probs=84.1
Q ss_pred CcccEEEECCChHHHHHHHHhhc-CCC-CeEEEEeeccCCCCCcccCCcceeeh--------------------------
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISK-NPS-IRVAIIEQSVSPGGGAWLGGQLFSAM-------------------------- 141 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~-~~G-~~V~vlEk~~~~GG~~~~~g~~~~~~-------------------------- 141 (359)
.++||+|||||++|+++|++|++ . | .+|+||||....+|.+..+.+.+...
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~-g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~~~ 107 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEH-GITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDLNY 107 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhc-CCCeEEEEEcccccCcccccccceeeecccCccccHHHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999998 5 7 49999999865444443322211100
Q ss_pred ----------hc--chh-------HHHHHHHcCCcceec---------CC----------e--EE------EechHHHHH
Q 018188 142 ----------VV--RKP-------AQRFLDELGVEYDEQ---------DN----------Y--VV------IKHAALFTS 175 (359)
Q Consensus 142 ----------~~--~~~-------~~~~l~~~G~~~~~~---------~~----------~--~~------~~~~~~~~~ 175 (359)
.+ ... ..+.+.++|++.... +. . .+ ..+...+..
T Consensus 108 ~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~p~~l~~ 187 (407)
T TIGR01373 108 NVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTARHDAVAW 187 (407)
T ss_pred CcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCCHHHHHH
Confidence 00 000 011122344432110 00 0 00 112234445
Q ss_pred HHHHHHHhCCCcEEEcceeeeeEEEe-CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 176 TIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 176 ~L~~~~~~~~gv~i~~~~~V~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.|.+.+. +.|++++.+++|+++... ++.+.+|.+. ..++.|+.||+|+|+++
T Consensus 188 ~l~~~a~-~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~---------------~g~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 188 GYARGAD-RRGVDIIQNCEVTGFIRRDGGRVIGVETT---------------RGFIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHH-HCCCEEEeCCEEEEEEEcCCCcEEEEEeC---------------CceEECCEEEECCChhh
Confidence 5555554 689999999999999764 4666666653 24699999999999776
No 130
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.19 E-value=1.1e-10 Score=116.99 Aligned_cols=134 Identities=22% Similarity=0.332 Sum_probs=82.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh-HHHH---HHHcCCcceec-CCeE
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AQRF---LDELGVEYDEQ-DNYV 165 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~-~~~~---l~~~G~~~~~~-~~~~ 165 (359)
+|||+||||||+|+.+|+.|++. |.+|+|+||.. .||.|+..|+.+.+.+.+.. ..++ ...+|+.+... -.+.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 59999999999999999999999 99999999986 89999998888876554432 2222 23455433210 0010
Q ss_pred E-EechHHHHHHH---HHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCC
Q 018188 166 V-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGH 241 (359)
Q Consensus 166 ~-~~~~~~~~~~L---~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg 241 (359)
. ..+...+.+.+ ++...++.|++++.++ +..+ +...+. |... + ...++.+|+||+|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~--~~~~~~-v~~~--------~-----~~~~~~~d~lViAtGs 144 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLV--DPNTVR-VMTE--------D-----GEQTYTAKNIILATGS 144 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--cCCEEE-EecC--------C-----CcEEEEeCEEEEeCCC
Confidence 0 01111111221 2233346799998874 3322 333332 2211 0 1257999999999997
Q ss_pred CC
Q 018188 242 DG 243 (359)
Q Consensus 242 ~s 243 (359)
..
T Consensus 145 ~p 146 (462)
T PRK06416 145 RP 146 (462)
T ss_pred CC
Confidence 64
No 131
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.19 E-value=4.2e-10 Score=110.72 Aligned_cols=133 Identities=20% Similarity=0.303 Sum_probs=86.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc---------ce---
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE---------YD--- 159 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~--- 159 (359)
-+|+|||||++|+++|+.|+++ |++|+|+||.+.+... | ....+.+...+.|+++|+. ..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~~~~~~----g---~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~ 74 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQELSEV----G---AGLQLAPNAMRHLERLGVADRLSGTGVTPKALY 74 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCccCcC----C---ccceeChhHHHHHHHCCChHHHhhcccCcceEE
Confidence 4799999999999999999999 9999999998754210 0 1112223344444444431 00
Q ss_pred --ec-C-----------------C-eEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeecc
Q 018188 160 --EQ-D-----------------N-YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 218 (359)
Q Consensus 160 --~~-~-----------------~-~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~ 218 (359)
.. . . .....+...+.+.|++.+.+..+++++++++|+++..+++.+......
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~------- 147 (400)
T PRK06475 75 LMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIR------- 147 (400)
T ss_pred EecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEe-------
Confidence 00 0 0 011234566777787777655689999999999998776655422211
Q ss_pred CCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 219 HDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 219 ~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
.+ +..+++||.||.|+|.+|.
T Consensus 148 ~~-----~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 148 TN-----SVETVSAAYLIACDGVWSM 168 (400)
T ss_pred CC-----CCcEEecCEEEECCCccHh
Confidence 00 2357899999999997764
No 132
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.2e-10 Score=108.24 Aligned_cols=112 Identities=23% Similarity=0.322 Sum_probs=71.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCe-EEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIR-VAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKH 169 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 169 (359)
.|||+||||||+||+||+++++. +++ ++|+|+. .+||...... .......+.-...
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~-~l~~~li~~~~-~~gg~~~~~~---------------------~venypg~~~~~~ 59 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARA-GLKVVLILEGG-EPGGQLTKTT---------------------DVENYPGFPGGIL 59 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHc-CCCcEEEEecC-CcCCccccce---------------------eecCCCCCccCCc
Confidence 58999999999999999999999 999 5555554 5553111000 0000011111123
Q ss_pred hHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 170 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 170 ~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
..++++.+.+.+. ..++++.. ..|..+...++ ..-|.+. ..+++||.||+|||...
T Consensus 60 g~~L~~~~~~~a~-~~~~~~~~-~~v~~v~~~~~-~F~v~t~---------------~~~~~ak~vIiAtG~~~ 115 (305)
T COG0492 60 GPELMEQMKEQAE-KFGVEIVE-DEVEKVELEGG-PFKVKTD---------------KGTYEAKAVIIATGAGA 115 (305)
T ss_pred hHHHHHHHHHHHh-hcCeEEEE-EEEEEEeecCc-eEEEEEC---------------CCeEEEeEEEECcCCcc
Confidence 4566666666664 78999888 57777765543 3335443 24499999999999654
No 133
>PLN02697 lycopene epsilon cyclase
Probab=99.19 E-value=1.7e-10 Score=116.68 Aligned_cols=132 Identities=16% Similarity=0.243 Sum_probs=81.3
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHH-c---CCccee-----
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDE-L---GVEYDE----- 160 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~-~---G~~~~~----- 160 (359)
..+||+||||||+|+++|+.|++. |++|+|||+......+ .+.+......-...+.+.. + -+.++.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~~p~~~n----~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~ 181 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDLPFTNN----YGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIM 181 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCcccCCCc----cccchhHHHhcCcHHHHHhhcCCcEEEecCCceee
Confidence 358999999999999999999999 9999999986433211 1111110000000111111 0 000100
Q ss_pred -cCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcC
Q 018188 161 -QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSC 239 (359)
Q Consensus 161 -~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAt 239 (359)
...|. ..+...+.+.|++++. +.|+++ .+++|+++..+++.+..+... +..+++|+.||+|+
T Consensus 182 ~~~~Yg-~V~R~~L~~~Ll~~a~-~~GV~~-~~~~V~~I~~~~~~~~vv~~~--------------dG~~i~A~lVI~Ad 244 (529)
T PLN02697 182 IGRAYG-RVSRTLLHEELLRRCV-ESGVSY-LSSKVDRITEASDGLRLVACE--------------DGRVIPCRLATVAS 244 (529)
T ss_pred ccCccc-EEcHHHHHHHHHHHHH-hcCCEE-EeeEEEEEEEcCCcEEEEEEc--------------CCcEEECCEEEECC
Confidence 00111 2455677788887775 579998 567999988766655433332 23679999999999
Q ss_pred CCCC
Q 018188 240 GHDG 243 (359)
Q Consensus 240 Gg~s 243 (359)
|..+
T Consensus 245 G~~S 248 (529)
T PLN02697 245 GAAS 248 (529)
T ss_pred CcCh
Confidence 9876
No 134
>PRK14694 putative mercuric reductase; Provisional
Probab=99.18 E-value=1.4e-10 Score=116.53 Aligned_cols=139 Identities=15% Similarity=0.227 Sum_probs=83.6
Q ss_pred cccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhH-HHHHHH----cCCccee-
Q 018188 87 VTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-QRFLDE----LGVEYDE- 160 (359)
Q Consensus 87 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~-~~~l~~----~G~~~~~- 160 (359)
+...+|||+|||||++|+.+|+.|++. |++|+|||+. .+||.|.+.|+.+...+.+... .+..+. .|+....
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~ 79 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATER-GARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP 79 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCC
Confidence 344579999999999999999999999 9999999996 6899999888887776654322 222222 2332110
Q ss_pred cCCeEE-EechHHHHHHH----HHHHHh-CCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCE
Q 018188 161 QDNYVV-IKHAALFTSTI----MSKLLA-RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKI 234 (359)
Q Consensus 161 ~~~~~~-~~~~~~~~~~L----~~~~~~-~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~ 234 (359)
.-+|.. ..+.......+ .....+ ..+++++.+ ++..+ +.+.+. |... ++...++++|+
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~i--d~~~~~-V~~~------------~g~~~~~~~d~ 143 (468)
T PRK14694 80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFV--DERTLT-VTLN------------DGGEQTVHFDR 143 (468)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEe--cCCEEE-EEec------------CCCeEEEECCE
Confidence 001100 01111111221 112222 347888877 45555 333322 3332 11225799999
Q ss_pred EEEcCCCCC
Q 018188 235 VVSSCGHDG 243 (359)
Q Consensus 235 VIlAtGg~s 243 (359)
||+|||...
T Consensus 144 lViATGs~p 152 (468)
T PRK14694 144 AFIGTGARP 152 (468)
T ss_pred EEEeCCCCC
Confidence 999999764
No 135
>PRK07538 hypothetical protein; Provisional
Probab=99.18 E-value=5.3e-10 Score=110.46 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=84.0
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCC---------cce----
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGV---------EYD---- 159 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~---- 159 (359)
||+|||||++|+++|+.|++. |++|+|+||.+.+.- ...+ ..+.+...+.|+++|+ +..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~--~g~g-----i~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~ 73 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAPELRP--LGVG-----INLLPHAVRELAELGLLDALDAIGIRTRELAY 73 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCCcccc--cCcc-----eeeCchHHHHHHHCCCHHHHHhhCCCCcceEE
Confidence 899999999999999999999 999999999875431 0001 1112223333333332 100
Q ss_pred --ecC------------C--e-EEEechHHHHHHHHHHHHhCCC-cEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCC
Q 018188 160 --EQD------------N--Y-VVIKHAALFTSTIMSKLLARPN-VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT 221 (359)
Q Consensus 160 --~~~------------~--~-~~~~~~~~~~~~L~~~~~~~~g-v~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~ 221 (359)
..+ . + .+..+...+.+.|++.+.+..| .+++++++|+++..+++.+. +...+ .
T Consensus 74 ~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~------~-- 144 (413)
T PRK07538 74 FNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGD------R-- 144 (413)
T ss_pred EcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEec------c--
Confidence 000 0 1 1124556777778777765445 57999999999987655432 22211 0
Q ss_pred CCCCCCeEEEcCEEEEcCCCCCC
Q 018188 222 QSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 222 ~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
..++..+++||.||.|+|.+|.
T Consensus 145 -~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 145 -AGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred -CCCccceEEeeEEEECCCCCHH
Confidence 1123468999999999997763
No 136
>PRK06996 hypothetical protein; Provisional
Probab=99.18 E-value=6.8e-10 Score=109.18 Aligned_cols=134 Identities=17% Similarity=0.260 Sum_probs=89.3
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCC----CeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc------ce
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPS----IRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE------YD 159 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G----~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~------~~ 159 (359)
.++||+||||||+|+++|+.|++. | ++|+|+|+...+.- ........+.....++|+++|+. +.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~~~~~-----~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~ 83 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDAREPAAS-----ANDPRAIALSHGSRVLLETLGAWPADATPIE 83 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCCCCcC-----CCCceEEEecHHHHHHHHhCCCchhcCCccc
Confidence 458999999999999999999998 6 57999999764320 01122334556666777777741 11
Q ss_pred e---c--CC---------------eEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccC
Q 018188 160 E---Q--DN---------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 219 (359)
Q Consensus 160 ~---~--~~---------------~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~ 219 (359)
. . .. +.+..+...+.+.|.+.+. +.+++++++++++++..+++.+. +... .
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~-~~g~~~~~~~~v~~~~~~~~~v~-v~~~-------~ 154 (398)
T PRK06996 84 HIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVR-GTPVRWLTSTTAHAPAQDADGVT-LALG-------T 154 (398)
T ss_pred EEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHH-hCCCEEEcCCeeeeeeecCCeEE-EEEC-------C
Confidence 0 0 00 1123445667778877775 56899999999999977666543 2221 0
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCC
Q 018188 220 DTQSCMDPNVMEAKIVVSSCGHD 242 (359)
Q Consensus 220 ~~~~~g~~~~i~A~~VIlAtGg~ 242 (359)
++ ...+++||+||.|+|+.
T Consensus 155 ~~----g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 155 PQ----GARTLRARIAVQAEGGL 173 (398)
T ss_pred CC----cceEEeeeEEEECCCCC
Confidence 00 12579999999999964
No 137
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.18 E-value=3.3e-10 Score=113.31 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=84.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcce-ee-------hhcchhHHHHHHH---------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLF-SA-------MVVRKPAQRFLDE--------- 153 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~-~~-------~~~~~~~~~~l~~--------- 153 (359)
..+|+|||||++||+||.+|.+. |++|+|+||+..+||......... +. ........+-|.-
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 47999999999999999999999 999999999999987543221110 00 0001111111110
Q ss_pred cCCcceec-----CCeEEEechHHHHHHHHHHHHhCCCcE--EEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCC
Q 018188 154 LGVEYDEQ-----DNYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 226 (359)
Q Consensus 154 ~G~~~~~~-----~~~~~~~~~~~~~~~L~~~~~~~~gv~--i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 226 (359)
...++... ..........++.+.|...+ ++.|+. |+++++|+++...++++. |... +.+ +.
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a-~~fgl~~~I~~~t~V~~V~~~~~~w~-V~~~------~~~----~~ 156 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFA-REFKIEEMVRFETEVVRVEPVDGKWR-VQSK------NSG----GF 156 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHH-HHcCCcceEEecCEEEEEeecCCeEE-EEEE------cCC----Cc
Confidence 11222110 01112234456666654444 467877 899999999987766544 3221 010 11
Q ss_pred CeEEEcCEEEEcCCCCC
Q 018188 227 PNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 227 ~~~i~A~~VIlAtGg~s 243 (359)
..+..+|.||+|||+++
T Consensus 157 ~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 157 SKDEIFDAVVVCNGHYT 173 (461)
T ss_pred eEEEEcCEEEEeccCCC
Confidence 23568999999999765
No 138
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.17 E-value=9.7e-10 Score=109.69 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=80.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcce----eehhcchhHH-HHHHHcC------C--c
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLF----SAMVVRKPAQ-RFLDELG------V--E 157 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~----~~~~~~~~~~-~~l~~~G------~--~ 157 (359)
+|||+||||||+|+++|+.|++. |++|+|+||.....- ..++.+. ..+-+..... +.+.... . .
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~~~~k--~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~ 115 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKG-GIETFLIERKLDNAK--PCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD 115 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCCC--CccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEE
Confidence 48999999999999999999999 999999999753210 1122211 1111111111 1111111 1 1
Q ss_pred cee---cCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeC--CEEEEEEEceeeeeccCCCCCCCCCeEEEc
Q 018188 158 YDE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEA 232 (359)
Q Consensus 158 ~~~---~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A 232 (359)
+.. ...+....+...+.+.|.+++. +.|++++.+ .+.++..++ +....+.... ...+ ...++..+++|
T Consensus 116 ~~~~~~~~~~~~~v~R~~~d~~L~~~A~-~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~----~~~~-~~~g~~~~v~a 188 (450)
T PLN00093 116 IGKTLKPHEYIGMVRREVLDSFLRERAQ-SNGATLING-LFTRIDVPKDPNGPYVIHYTS----YDSG-SGAGTPKTLEV 188 (450)
T ss_pred ecccCCCCCeEEEecHHHHHHHHHHHHH-HCCCEEEec-eEEEEEeccCCCCcEEEEEEe----cccc-ccCCCccEEEe
Confidence 110 0123334566677777777775 679999876 577775422 2222233211 0000 00123467999
Q ss_pred CEEEEcCCCCCC
Q 018188 233 KIVVSSCGHDGP 244 (359)
Q Consensus 233 ~~VIlAtGg~s~ 244 (359)
|+||.|+|..+.
T Consensus 189 ~~VIgADG~~S~ 200 (450)
T PLN00093 189 DAVIGADGANSR 200 (450)
T ss_pred CEEEEcCCcchH
Confidence 999999997663
No 139
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.17 E-value=2e-10 Score=115.15 Aligned_cols=131 Identities=18% Similarity=0.233 Sum_probs=79.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh-HHHHHHH--cCCccee-cCCeEE-
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AQRFLDE--LGVEYDE-QDNYVV- 166 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~-~~~~l~~--~G~~~~~-~~~~~~- 166 (359)
|||+||||||+|+.+|+.|++. |++|+|+||.. +||.|.+.|+.+.+.+.... ..+++.+ +|+.... ..+|..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGEL 78 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHH
Confidence 6999999999999999999999 99999999975 89999888888877665432 2233332 2221100 000100
Q ss_pred EechHHHHHHH----HHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCC
Q 018188 167 IKHAALFTSTI----MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD 242 (359)
Q Consensus 167 ~~~~~~~~~~L----~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~ 242 (359)
..+...+...+ +....++.|++++.++ +.. .++..+ .+.. ....+.+|+||+|||..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~--~~~~~v---~v~~-------------g~~~~~~~~lIiATGs~ 139 (463)
T TIGR02053 79 LEGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARF--KDPKTV---KVDL-------------GREVRGAKRFLIATGAR 139 (463)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEE--ccCCEE---EEcC-------------CeEEEEeCEEEEcCCCC
Confidence 01112222222 2234456789988774 221 233322 2210 02458999999999975
Q ss_pred C
Q 018188 243 G 243 (359)
Q Consensus 243 s 243 (359)
.
T Consensus 140 p 140 (463)
T TIGR02053 140 P 140 (463)
T ss_pred C
Confidence 4
No 140
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.17 E-value=6.3e-10 Score=109.49 Aligned_cols=143 Identities=17% Similarity=0.243 Sum_probs=80.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehh----cchhHH-HHHHHc------CCcc--
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV----VRKPAQ-RFLDEL------GVEY-- 158 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~----~~~~~~-~~l~~~------G~~~-- 158 (359)
+||+||||||+|++||+.|++. |++|+||||....+..| ++.+....+ +..... ..+... +..+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~~~~~~c--g~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~ 77 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKPDNAKPC--GGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDI 77 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCCCCCCCc--cccccHhhHhhccCchhHHHhhhceeEEecCCceEEEe
Confidence 5899999999999999999999 99999999986544322 222211110 001100 001110 0000
Q ss_pred ee---cCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe--CCEEEEEEEceeeeeccCCCCCCCCCeEEEcC
Q 018188 159 DE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK 233 (359)
Q Consensus 159 ~~---~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~ 233 (359)
.. ...+....+...+.+.|.+.+. +.|++++.++ +.++... .+...++.... .+ .+...+...+++|+
T Consensus 78 ~~~~~~~~~~~~v~R~~~d~~L~~~a~-~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~----~~-~~~~~g~~~~i~a~ 150 (398)
T TIGR02028 78 GRTLKEHEYIGMLRREVLDSFLRRRAA-DAGATLINGL-VTKLSLPADADDPYTLHYIS----SD-SGGPSGTRCTLEVD 150 (398)
T ss_pred ccCCCCCCceeeeeHHHHHHHHHHHHH-HCCcEEEcce-EEEEEeccCCCceEEEEEee----cc-ccccCCCccEEEeC
Confidence 00 0112223455666677777765 6799998885 7666532 22333343210 00 00001234689999
Q ss_pred EEEEcCCCCCC
Q 018188 234 IVVSSCGHDGP 244 (359)
Q Consensus 234 ~VIlAtGg~s~ 244 (359)
+||.|+|..+.
T Consensus 151 ~VIgADG~~S~ 161 (398)
T TIGR02028 151 AVIGADGANSR 161 (398)
T ss_pred EEEECCCcchH
Confidence 99999997764
No 141
>PTZ00367 squalene epoxidase; Provisional
Probab=99.16 E-value=7.5e-10 Score=113.15 Aligned_cols=150 Identities=25% Similarity=0.273 Sum_probs=89.5
Q ss_pred cccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcc--------
Q 018188 87 VTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEY-------- 158 (359)
Q Consensus 87 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~-------- 158 (359)
....++||+|||||++|+++|+.|++. |.+|+|+||.....-. ......+.+...+.|+++|+.-
T Consensus 29 ~~~~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~~~~~~------r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~ 101 (567)
T PTZ00367 29 RTNYDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDLFSKPD------RIVGELLQPGGVNALKELGMEECAEGIGMP 101 (567)
T ss_pred ccccCccEEEECCCHHHHHHHHHHHhc-CCEEEEEccccccccc------hhhhhhcCHHHHHHHHHCCChhhHhhcCcc
Confidence 334579999999999999999999999 9999999997521000 0011124455566677776521
Q ss_pred -------eecCCe----------EEEechHHHHHHHHHHH--HhCCCcEEEcceeeeeEEEeCC----EEEEEEEceeee
Q 018188 159 -------DEQDNY----------VVIKHAALFTSTIMSKL--LARPNVKLFNAVAAEDLIVKGG----RVGGVVTNWALV 215 (359)
Q Consensus 159 -------~~~~~~----------~~~~~~~~~~~~L~~~~--~~~~gv~i~~~~~V~~l~~~~~----~v~gv~~~~~~~ 215 (359)
+..+.. ....+...+.+.|.+.+ ....|++++.. +|+++..+++ ++.+|.....-.
T Consensus 102 ~~~~~v~~~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~gV~~~~~~~ 180 (567)
T PTZ00367 102 CFGYVVFDHKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAYGVEYTEAEK 180 (567)
T ss_pred eeeeEEEECCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeEEEEEecCCc
Confidence 000100 01124456667776666 33578999754 7888866543 467776531100
Q ss_pred ------eccCC-----CCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 216 ------SMNHD-----TQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 216 ------~~~~~-----~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
.+..+ .-...+..+++||.||.|+|.+|.
T Consensus 181 ~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~ 220 (567)
T PTZ00367 181 YDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSK 220 (567)
T ss_pred ccccccccccccccccccccccceEEEeCEEEECCCcchH
Confidence 00000 000012467999999999997763
No 142
>PRK06116 glutathione reductase; Validated
Probab=99.16 E-value=1.2e-10 Score=116.48 Aligned_cols=129 Identities=20% Similarity=0.253 Sum_probs=82.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh-HHHH----HHHcCCcceec-CCe
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AQRF----LDELGVEYDEQ-DNY 164 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~-~~~~----l~~~G~~~~~~-~~~ 164 (359)
+|||+||||||+|+.||+.|++. |.+|+|+|+. .+||.|.+.|+++.+.+.... ..+. ...+|+..... .+|
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDW 81 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCH
Confidence 59999999999999999999999 9999999996 789999998998887655432 2222 23355432211 011
Q ss_pred EEE-echH----HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcC
Q 018188 165 VVI-KHAA----LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSC 239 (359)
Q Consensus 165 ~~~-~~~~----~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAt 239 (359)
... .... .+... +.+..++.|++++.++ +..+ +...+ .+. ..++++|+||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~l~~~gv~~~~g~-~~~v--~~~~v---~~~---------------g~~~~~d~lViAT 139 (450)
T PRK06116 82 AKLIANRDAYIDRLHGS-YRNGLENNGVDLIEGF-ARFV--DAHTV---EVN---------------GERYTADHILIAT 139 (450)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhCCCEEEEEE-EEEc--cCCEE---EEC---------------CEEEEeCEEEEec
Confidence 100 0001 11122 2233346799998874 4433 33332 221 2579999999999
Q ss_pred CCCC
Q 018188 240 GHDG 243 (359)
Q Consensus 240 Gg~s 243 (359)
|...
T Consensus 140 Gs~p 143 (450)
T PRK06116 140 GGRP 143 (450)
T ss_pred CCCC
Confidence 9764
No 143
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.15 E-value=2.3e-11 Score=107.89 Aligned_cols=130 Identities=21% Similarity=0.270 Sum_probs=69.9
Q ss_pred EEECCChHHHHHHHHhhcCCCCe-EEEEeeccCCCCCcccCC---cceeehhc-chhHHHHHHHcCC----cceecCCeE
Q 018188 95 IVVGAGSAGLSCAYEISKNPSIR-VAIIEQSVSPGGGAWLGG---QLFSAMVV-RKPAQRFLDELGV----EYDEQDNYV 165 (359)
Q Consensus 95 vIIGgG~aGl~aA~~La~~~G~~-V~vlEk~~~~GG~~~~~g---~~~~~~~~-~~~~~~~l~~~G~----~~~~~~~~~ 165 (359)
+|||||++||++|+.|.++ |++ |+|||++..+||...... .+...... .......+..+.. .+.....+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF- 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS-
T ss_pred CEECcCHHHHHHHHHHHhC-CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc-
Confidence 7999999999999999999 999 999999999887532110 11110000 0000000000000 00000111
Q ss_pred EEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 166 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 166 ~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
....++.+. ++.+.++.+++++++++|+++..+++++. |.+. +..+++|+.||+|||..+.
T Consensus 79 --~~~~~v~~y-l~~~~~~~~l~i~~~~~V~~v~~~~~~w~-v~~~--------------~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 79 --PSGEEVLDY-LQEYAERFGLEIRFNTRVESVRRDGDGWT-VTTR--------------DGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp --EBHHHHHHH-HHHHHHHTTGGEETS--EEEEEEETTTEE-EEET--------------TS-EEEEEEEEE---SSCS
T ss_pred --CCHHHHHHH-HHHHHhhcCcccccCCEEEEEEEeccEEE-EEEE--------------ecceeeeeeEEEeeeccCC
Confidence 233444444 45555677889999999999999877643 5443 1258999999999997653
No 144
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.15 E-value=3.7e-10 Score=112.70 Aligned_cols=142 Identities=20% Similarity=0.290 Sum_probs=90.5
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceee-----------------------------
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSA----------------------------- 140 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~----------------------------- 140 (359)
.++||+|||||+.|+.+|+.++.+ |++|+|+|+++...|++.....+.+.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~R-Gl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH 89 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGR-GLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH 89 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhC-CCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence 679999999999999999999999 99999999999887766433222111
Q ss_pred ------hh--cch-hHHHHH--------HH-cCCc--------------------ceec---CCeEE---EechHHHHHH
Q 018188 141 ------MV--VRK-PAQRFL--------DE-LGVE--------------------YDEQ---DNYVV---IKHAALFTST 176 (359)
Q Consensus 141 ------~~--~~~-~~~~~l--------~~-~G~~--------------------~~~~---~~~~~---~~~~~~~~~~ 176 (359)
+. ..+ ....|+ +. -|+. +... +.+.+ ..+...+.-.
T Consensus 90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~ 169 (532)
T COG0578 90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA 169 (532)
T ss_pred ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence 00 000 000000 00 0110 0000 01111 1223344444
Q ss_pred HHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 177 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 177 L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+...+. +.|.++++.++|+.+..+++ +.||.+.+. . .|...+|+|+.||.|||.++
T Consensus 170 ~a~~A~-~~Ga~il~~~~v~~~~re~~-v~gV~~~D~------~---tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 170 NARDAA-EHGAEILTYTRVESLRREGG-VWGVEVEDR------E---TGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred HHHHHH-hcccchhhcceeeeeeecCC-EEEEEEEec------C---CCcEEEEEcCEEEECCCccH
Confidence 444443 78999999999999999888 999988642 2 23567899999999999443
No 145
>PLN02463 lycopene beta cyclase
Probab=99.15 E-value=9.3e-10 Score=109.55 Aligned_cols=123 Identities=21% Similarity=0.357 Sum_probs=80.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccC-CcceeehhcchhHHHHHHHcCCc------------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLG-GQLFSAMVVRKPAQRFLDELGVE------------ 157 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~-g~~~~~~~~~~~~~~~l~~~G~~------------ 157 (359)
.|||+|||||++|+++|+.|++. |++|+|||+.+... |.. .+.+ .+.++++|+.
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~~~~---~p~~~g~w---------~~~l~~lgl~~~l~~~w~~~~v 94 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSPLSI---WPNNYGVW---------VDEFEALGLLDCLDTTWPGAVV 94 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCccch---hccccchH---------HHHHHHCCcHHHHHhhCCCcEE
Confidence 48999999999999999999999 99999999975321 111 0111 1112222210
Q ss_pred -cee------cCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEE
Q 018188 158 -YDE------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM 230 (359)
Q Consensus 158 -~~~------~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i 230 (359)
++. ...|. ..+...+.+.|.+++. +.|++++ ..+|+++..+++.+ .|.+. ++.++
T Consensus 95 ~~~~~~~~~~~~~y~-~V~R~~L~~~Ll~~~~-~~GV~~~-~~~V~~I~~~~~~~-~V~~~--------------dG~~i 156 (447)
T PLN02463 95 YIDDGKKKDLDRPYG-RVNRKKLKSKMLERCI-ANGVQFH-QAKVKKVVHEESKS-LVVCD--------------DGVKI 156 (447)
T ss_pred EEeCCCCccccCcce-eEEHHHHHHHHHHHHh-hcCCEEE-eeEEEEEEEcCCeE-EEEEC--------------CCCEE
Confidence 000 01122 2345667777777775 5799987 45899988776653 34443 23589
Q ss_pred EcCEEEEcCCCCCC
Q 018188 231 EAKIVVSSCGHDGP 244 (359)
Q Consensus 231 ~A~~VIlAtGg~s~ 244 (359)
+|+.||+|+|..+.
T Consensus 157 ~A~lVI~AdG~~s~ 170 (447)
T PLN02463 157 QASLVLDATGFSRC 170 (447)
T ss_pred EcCEEEECcCCCcC
Confidence 99999999998775
No 146
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.15 E-value=5.1e-10 Score=105.02 Aligned_cols=112 Identities=21% Similarity=0.290 Sum_probs=74.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
|||+|||||++|+++|..|++. |.+|+|+|+.. +||..+..... ..+ ..+.......
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~-~gg~~~~~~~~--------------~~~-------~~~~~~~~~~ 57 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME-PGGQLTTTTEV--------------ENY-------PGFPEGISGP 57 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC-CCcceeecccc--------------ccc-------CCCCCCCChH
Confidence 6999999999999999999999 99999999886 55533211100 000 0010011223
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++...+.+.+. +.|+++++ ++|+++..+++.+. +... +..++++|+||+|||...
T Consensus 58 ~~~~~l~~~~~-~~gv~~~~-~~v~~v~~~~~~~~-v~~~--------------~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 58 ELMEKMKEQAV-KFGAEIIY-EEVIKVDLSDRPFK-VKTG--------------DGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHHHH-HcCCeEEE-EEEEEEEecCCeeE-EEeC--------------CCCEEEeCEEEECCCCCc
Confidence 44555555554 67899998 78998877655433 3332 135799999999999754
No 147
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.14 E-value=9.4e-10 Score=107.95 Aligned_cols=135 Identities=19% Similarity=0.192 Sum_probs=82.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc---------ce--
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE---------YD-- 159 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~-- 159 (359)
.+||+|||||++|+++|+.|++. |++|+|+||.+...-. .......+.....+.|+++|+. .+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~-----~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 75 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQSRDYVL-----GRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGT 75 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCCCcccC-----CceeEeeECHHHHHHHHHCCChHHHHhcCceecce
Confidence 37999999999999999999999 9999999998742100 0011112333455666666641 10
Q ss_pred ---ecCCe------------EE-EechHHHHHHHHHHHHhCCCcEEEcceeeeeEEE-eCCEEEEEEEceeeeeccCCCC
Q 018188 160 ---EQDNY------------VV-IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGGRVGGVVTNWALVSMNHDTQ 222 (359)
Q Consensus 160 ---~~~~~------------~~-~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~-~~~~v~gv~~~~~~~~~~~~~~ 222 (359)
..... .. ......+.+.|++.+. +.|+.++++++++.+.. +++.+ .|....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~g~~~~~~~~~v~~~~~~~~~~-~V~~~~---------- 143 (390)
T TIGR02360 76 EIAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEARE-AAGLTTVYDADDVRLHDLAGDRP-YVTFER---------- 143 (390)
T ss_pred EEeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHH-hcCCeEEEeeeeEEEEecCCCcc-EEEEEE----------
Confidence 00000 00 1122345566666664 56889999988877754 22322 333320
Q ss_pred CCCCCeEEEcCEEEEcCCCCCC
Q 018188 223 SCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 223 ~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+|...+++||.||.|+|.+|.
T Consensus 144 -~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 144 -DGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred -CCeEEEEEeCEEEECCCCchh
Confidence 112357999999999998774
No 148
>PRK05868 hypothetical protein; Validated
Probab=99.14 E-value=9.7e-10 Score=107.19 Aligned_cols=128 Identities=23% Similarity=0.331 Sum_probs=80.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc---------ce---
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE---------YD--- 159 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~--- 159 (359)
.||+|||||++|+++|+.|++. |++|+|+||.+.+... |. ...+.....+.|+++|+. +.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~----g~---~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~ 73 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPGLRPG----GQ---AIDVRGPALDVLERMGLLAAAQEHKTRIRGAS 73 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCC----ce---eeeeCchHHHHHHhcCCHHHHHhhccCccceE
Confidence 3899999999999999999999 9999999998765311 00 011223334444444431 00
Q ss_pred --ecCCe------------------EEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccC
Q 018188 160 --EQDNY------------------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 219 (359)
Q Consensus 160 --~~~~~------------------~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~ 219 (359)
..... .+..+...+.+.|.+ .. ..|++++++++|+++..+++.+. +...
T Consensus 74 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~-~~-~~~v~i~~~~~v~~i~~~~~~v~-v~~~-------- 142 (372)
T PRK05868 74 FVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYG-AT-QPSVEYLFDDSISTLQDDGDSVR-VTFE-------- 142 (372)
T ss_pred EEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHH-hc-cCCcEEEeCCEEEEEEecCCeEE-EEEC--------
Confidence 00000 011223344444332 22 56899999999999987666554 3332
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 220 DTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 220 ~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+..+++||.||.|+|.+|.
T Consensus 143 ------dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 143 ------RAAAREFDLVIGADGLHSN 161 (372)
T ss_pred ------CCCeEEeCEEEECCCCCch
Confidence 2357899999999997774
No 149
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.14 E-value=9.4e-10 Score=115.09 Aligned_cols=136 Identities=20% Similarity=0.248 Sum_probs=85.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCC-CCCcccCCcceeehhc----------c---hhHHHHHHHc--
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSP-GGGAWLGGQLFSAMVV----------R---KPAQRFLDEL-- 154 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~-GG~~~~~g~~~~~~~~----------~---~~~~~~l~~~-- 154 (359)
.+||+|||||++|+++|++|+++ |.+|+|||+...+ .|.+...++.+..... . ....+++.++
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~ 338 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALPA 338 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 36999999999999999999999 9999999998644 3444443332211100 0 0111222221
Q ss_pred -CCc--ceecC----------------------------------------------CeEE----EechHHHHHHHHHHH
Q 018188 155 -GVE--YDEQD----------------------------------------------NYVV----IKHAALFTSTIMSKL 181 (359)
Q Consensus 155 -G~~--~~~~~----------------------------------------------~~~~----~~~~~~~~~~L~~~~ 181 (359)
+.. +...+ .... ..++..++..|.+.+
T Consensus 339 ~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a 418 (662)
T PRK01747 339 AGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALA 418 (662)
T ss_pred cCCCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhc
Confidence 211 10000 0000 123456777777776
Q ss_pred HhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 182 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 182 ~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
. + |++++++++|+++..+++.+. |.+. +...++|+.||+|+|.++.
T Consensus 419 ~-~-Gv~i~~~~~V~~i~~~~~~~~-v~t~--------------~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 419 G-Q-QLTIHFGHEVARLEREDDGWQ-LDFA--------------GGTLASAPVVVLANGHDAA 464 (662)
T ss_pred c-c-CcEEEeCCEeeEEEEeCCEEE-EEEC--------------CCcEEECCEEEECCCCCcc
Confidence 4 5 999999999999988777654 4442 1245789999999998763
No 150
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.12 E-value=7.4e-10 Score=110.29 Aligned_cols=123 Identities=22% Similarity=0.313 Sum_probs=76.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccC-CCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVS-PGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKH 169 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~-~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 169 (359)
+|||+|||||++|+.||..|++. |.+|+|+||... .||.|.+.|+++...++... +.+..|... ..+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~------~~~~~~~~~-----~~~ 70 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESKAMYGGTCINIGCIPTKTLLVAA------EKNLSFEQV-----MAT 70 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCCcccceeeecCccccchHhhhhh------hcCCCHHHH-----HHH
Confidence 59999999999999999999999 999999999864 68888888877665443211 012111110 000
Q ss_pred hHH----HHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 170 AAL----FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 170 ~~~----~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
... +.....+. ..+.|++++.++. . + .++.++. +... .+..++.+|+||+|||...
T Consensus 71 ~~~~~~~~~~~~~~~-~~~~gV~~~~g~~-~-~-~~~~~v~-v~~~-------------~~~~~~~~d~vViATGs~~ 130 (438)
T PRK07251 71 KNTVTSRLRGKNYAM-LAGSGVDLYDAEA-H-F-VSNKVIE-VQAG-------------DEKIELTAETIVINTGAVS 130 (438)
T ss_pred HHHHHHHHHHHHHHH-HHhCCCEEEEEEE-E-E-ccCCEEE-EeeC-------------CCcEEEEcCEEEEeCCCCC
Confidence 011 11111222 3467899887752 2 1 2333332 2211 0235799999999999764
No 151
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.12 E-value=1.9e-09 Score=111.98 Aligned_cols=137 Identities=22% Similarity=0.264 Sum_probs=83.6
Q ss_pred cccEEEECCChHHHHHHHHhhc-CCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc------------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISK-NPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE------------ 157 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~------------ 157 (359)
++||+||||||+||++|+.|++ . |++|+||||.+.+-- .| ....+.....+.|+++|+.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~~~~~----~g---rA~gl~prtleiL~~lGl~d~l~~~g~~~~~ 103 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKPGRLE----LG---QADGIACRTMEMFQAFGFAERILKEAYWINE 103 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCCCCCC----CC---eeeEEChHHHHHHHhccchHHHHhhcccccc
Confidence 5899999999999999999999 6 999999999864311 00 1112233444555554431
Q ss_pred ---ceec--------------------CCeE-EEechHHHHHHHHHHHHhCCC--cEEEcceeeeeEEEeCC---EEEEE
Q 018188 158 ---YDEQ--------------------DNYV-VIKHAALFTSTIMSKLLARPN--VKLFNAVAAEDLIVKGG---RVGGV 208 (359)
Q Consensus 158 ---~~~~--------------------~~~~-~~~~~~~~~~~L~~~~~~~~g--v~i~~~~~V~~l~~~~~---~v~gv 208 (359)
|... ..+. ...+...+.+.|++.+. +.+ +++.++++++++..++. .|. |
T Consensus 104 ~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~-~~g~~v~v~~g~~v~~~~~~~~~~~~V~-v 181 (634)
T PRK08294 104 TAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMR-NSPTRLEPDYGREFVDLEVDEEGEYPVT-V 181 (634)
T ss_pred eEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHH-hcCCceEEEeCcEEEEEEECCCCCCCEE-E
Confidence 0000 0011 22344456666666665 444 68889999999987642 233 3
Q ss_pred EEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 209 VTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 209 ~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.+.+ .++..++...+++||+||.|+|++|
T Consensus 182 ~l~~------~~~~~~g~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 182 TLRR------TDGEHEGEEETVRAKYVVGCDGARS 210 (634)
T ss_pred EEEE------CCCCCCCceEEEEeCEEEECCCCch
Confidence 3321 0000112346899999999999765
No 152
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.12 E-value=6.8e-10 Score=110.56 Aligned_cols=136 Identities=19% Similarity=0.277 Sum_probs=75.9
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCe-EEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHc-CCcceecCCeEEE
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIR-VAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDEL-GVEYDEQDNYVVI 167 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~-V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~-G~~~~~~~~~~~~ 167 (359)
..+||+|||||++|+++|+.|.+. |.. ++|+||+..+||.-+.. .+..+.+..+ .++..+ +.+|.....+...
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~Gg~W~~~--ry~~l~~~~p--~~~~~~~~~p~~~~~~~~~~ 81 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDVGGTWRYN--RYPGLRLDSP--KWLLGFPFLPFRWDEAFAPF 81 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCcCCcchhc--cCCceEECCc--hheeccCCCccCCcccCCCc
Confidence 458999999999999999999999 998 99999999888763332 1221111111 111111 1223211223322
Q ss_pred echHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeC-CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 168 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 168 ~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
....++....+++.... .++.+++.|+.+..++ +....|.+.. + ...++.||.||+|||.++.
T Consensus 82 ~~~~~y~~~~~~~y~~~--~~i~~~~~v~~~~~~~~~~~w~V~~~~-------~-----~~~~~~a~~vV~ATG~~~~ 145 (443)
T COG2072 82 AEIKDYIKDYLEKYGLR--FQIRFNTRVEVADWDEDTKRWTVTTSD-------G-----GTGELTADFVVVATGHLSE 145 (443)
T ss_pred ccHHHHHHHHHHHcCce--eEEEcccceEEEEecCCCCeEEEEEcC-------C-----CeeeEecCEEEEeecCCCC
Confidence 22333443334443222 3444555555555443 2233344431 0 1122789999999998763
No 153
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.12 E-value=1.1e-09 Score=113.55 Aligned_cols=65 Identities=17% Similarity=0.117 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe--CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 169 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 169 ~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++..+...|...+. +.|++++++++|+++..+ ++++.+|.+.+. . +++..++.||.||+|+|.++
T Consensus 230 dp~rl~~al~~~A~-~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~------~---tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 230 NDSRLNVALACTAA-LAGAAVLNYAEVVSLIKDESTGRIVGARVRDN------L---TGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred cHHHHHHHHHHHHH-hCCcEEEeccEEEEEEEecCCCcEEEEEEEEC------C---CCcEEEEEeCEEEECCCHhH
Confidence 45667777777775 679999999999999876 467887766321 1 11234789999999999765
No 154
>PRK13748 putative mercuric reductase; Provisional
Probab=99.12 E-value=4.3e-10 Score=115.44 Aligned_cols=65 Identities=25% Similarity=0.383 Sum_probs=53.3
Q ss_pred HHhhhhccc----ccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcch
Q 018188 79 TRRYMTDMV----TYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRK 145 (359)
Q Consensus 79 ~~~~~~~~~----~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~ 145 (359)
++.|+...+ ...+|||||||||++|+.+|+.|++. |++|+|||+. .+||.|.+.|+++.+.+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~-~~GG~c~n~gciPsk~l~~~ 150 (561)
T PRK13748 82 MRGWLGGADKHSGNERPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERG-TIGGTCVNVGCVPSKIMIRA 150 (561)
T ss_pred hhhhhccccchhcccCCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecC-cceeeccccCccccHHHHHH
Confidence 455665431 12369999999999999999999999 9999999997 78999999999887766554
No 155
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.11 E-value=7.7e-10 Score=111.44 Aligned_cols=141 Identities=21% Similarity=0.252 Sum_probs=85.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeec--------cCCCCCcccCCcceeehhcchh-HHHHH---HHcCCcc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQS--------VSPGGGAWLGGQLFSAMVVRKP-AQRFL---DELGVEY 158 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~--------~~~GG~~~~~g~~~~~~~~~~~-~~~~l---~~~G~~~ 158 (359)
+|||+|||+|++|..+|+.+++..|++|+|||+. ..+||.|.+.|+++.+.+++.. ..+.+ ..+|+..
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~~ 82 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEF 82 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCeec
Confidence 5999999999999999999999328999999984 4689999999999998877643 22333 3355532
Q ss_pred eec---CCeEE-EechHHHHHHHH---HHHHhC-CCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEE
Q 018188 159 DEQ---DNYVV-IKHAALFTSTIM---SKLLAR-PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM 230 (359)
Q Consensus 159 ~~~---~~~~~-~~~~~~~~~~L~---~~~~~~-~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i 230 (359)
+.. -+|.. ..+.......+. ...++. .|++++.+. ....+++.+. |... +++......++
T Consensus 83 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~---a~f~~~~~v~-V~~~--------~~~~~~~~~~~ 150 (486)
T TIGR01423 83 DRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW---GALEDKNVVL-VRES--------ADPKSAVKERL 150 (486)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE---EEEccCCEEE-Eeec--------cCCCCCcceEE
Confidence 211 01111 112222222222 223334 589999874 2223344332 2211 00000013579
Q ss_pred EcCEEEEcCCCCC
Q 018188 231 EAKIVVSSCGHDG 243 (359)
Q Consensus 231 ~A~~VIlAtGg~s 243 (359)
.+|.||+|||...
T Consensus 151 ~~d~lIIATGs~p 163 (486)
T TIGR01423 151 QAEHILLATGSWP 163 (486)
T ss_pred ECCEEEEecCCCC
Confidence 9999999999764
No 156
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.10 E-value=8.6e-10 Score=102.86 Aligned_cols=138 Identities=25% Similarity=0.318 Sum_probs=96.4
Q ss_pred cCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh----HHHHHHHcCCcceecCCe
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP----AQRFLDELGVEYDEQDNY 164 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~----~~~~l~~~G~~~~~~~~~ 164 (359)
..+||.+|||||..|+++|.++++. |.+|.|+|..-.+||+|.+.|+.+.+.++... ..+.-.++|++......|
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f 96 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASH-GAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF 96 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhc-CceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC
Confidence 3479999999999999999999999 99999999988899999999998877666542 233344677776544333
Q ss_pred --EEEech-HHH---HHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEc
Q 018188 165 --VVIKHA-ALF---TSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSS 238 (359)
Q Consensus 165 --~~~~~~-~~~---~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlA 238 (359)
..+... ..+ .+.++++.+.+.+++++.+.. .+ .+++.|. |..++ +....++|+++++|
T Consensus 97 dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a--~f-~~~~~v~-V~~~d------------~~~~~Ytak~iLIA 160 (478)
T KOG0405|consen 97 DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRA--RF-VSPGEVE-VEVND------------GTKIVYTAKHILIA 160 (478)
T ss_pred cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeE--EE-cCCCceE-EEecC------------CeeEEEecceEEEE
Confidence 222221 112 355677777778899888741 12 2344443 33321 12356899999999
Q ss_pred CCCCC
Q 018188 239 CGHDG 243 (359)
Q Consensus 239 tGg~s 243 (359)
+|+..
T Consensus 161 tGg~p 165 (478)
T KOG0405|consen 161 TGGRP 165 (478)
T ss_pred eCCcc
Confidence 99876
No 157
>PRK06753 hypothetical protein; Provisional
Probab=99.09 E-value=1.1e-09 Score=106.38 Aligned_cols=126 Identities=14% Similarity=0.188 Sum_probs=79.3
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCC---------cce----
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGV---------EYD---- 159 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~---- 159 (359)
||+|||||++|+++|+.|+++ |++|+|+||.+.+... .. ...+.+...+.|+++|+ +..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~~~~~--g~-----gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~ 73 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNESVKEV--GA-----GIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNL 73 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCccccc--cc-----ceeeChHHHHHHHhcChHHHHHhcCCcccceeE
Confidence 799999999999999999999 9999999999865311 00 11122333444444443 110
Q ss_pred --ecCCe-----------EEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCC
Q 018188 160 --EQDNY-----------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 226 (359)
Q Consensus 160 --~~~~~-----------~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 226 (359)
..+.. ....+...+.+.|.+.+ .+.+++++++|+++..+++.+. +... +
T Consensus 74 ~~~~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~--------------~ 135 (373)
T PRK06753 74 LDDKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYV---KEDAIFTGKEVTKIENETDKVT-IHFA--------------D 135 (373)
T ss_pred EcCCCCEEeecccccCCccccccHHHHHHHHHHhC---CCceEEECCEEEEEEecCCcEE-EEEC--------------C
Confidence 00000 01123344445544433 2468999999999987766553 3332 2
Q ss_pred CeEEEcCEEEEcCCCCCC
Q 018188 227 PNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 227 ~~~i~A~~VIlAtGg~s~ 244 (359)
+.++++|.||.|+|.+|.
T Consensus 136 g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 136 GESEAFDLCIGADGIHSK 153 (373)
T ss_pred CCEEecCEEEECCCcchH
Confidence 367899999999997653
No 158
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.09 E-value=3.4e-10 Score=113.92 Aligned_cols=138 Identities=19% Similarity=0.259 Sum_probs=82.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEee------ccCCCCCcccCCcceeehhcch-h----HHHHHHHcCCcce
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQ------SVSPGGGAWLGGQLFSAMVVRK-P----AQRFLDELGVEYD 159 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk------~~~~GG~~~~~g~~~~~~~~~~-~----~~~~l~~~G~~~~ 159 (359)
+|||+|||||++|+.||+.|++. |++|+|||+ ...+||.|.+.++.+...++.. . ..+++..+|+++.
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhC-CCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 59999999999999999999999 999999998 3567888888887765544332 1 1122345566532
Q ss_pred ec-CCeEEE-echHHHHH---HHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCE
Q 018188 160 EQ-DNYVVI-KHAALFTS---TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKI 234 (359)
Q Consensus 160 ~~-~~~~~~-~~~~~~~~---~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~ 234 (359)
.. -+|... .+.....+ .-.+.+.+..+++++.+. +..+..+++.. .|.+.. + +..++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~-~v~v~~-------~-----~~~~~~~d~ 148 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR-GSFVGKTDAGY-EIKVTG-------E-----DETVITAKH 148 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCCCCC-EEEEec-------C-----CCeEEEeCE
Confidence 21 111110 11111111 123344456799998774 43332222111 122210 0 125799999
Q ss_pred EEEcCCCCC
Q 018188 235 VVSSCGHDG 243 (359)
Q Consensus 235 VIlAtGg~s 243 (359)
||+|||...
T Consensus 149 lViATGs~p 157 (475)
T PRK06327 149 VIIATGSEP 157 (475)
T ss_pred EEEeCCCCC
Confidence 999999765
No 159
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.09 E-value=3.2e-09 Score=106.84 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeC-CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 169 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 169 ~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+...++..|.+.+. +.|++++++++|+++..++ +.+. +.+.. .+ .+...+++|++||+|+|+++
T Consensus 176 dp~~l~~aL~~~a~-~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~------~~---~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 176 DFGALTKQLLGYLV-QNGTTIRFGHEVRNLKRQSDGSWT-VTVKN------TR---TGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred CHHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCCeEE-EEEee------cc---CCceEEEECCEEEECCCcch
Confidence 45677788877775 5799999999999998754 3443 22210 00 11234799999999999765
No 160
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.08 E-value=2.6e-09 Score=104.43 Aligned_cols=132 Identities=19% Similarity=0.248 Sum_probs=79.7
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHH-cC--Ccce--ec---CCe
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDE-LG--VEYD--EQ---DNY 164 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~-~G--~~~~--~~---~~~ 164 (359)
||+|||||++|+++|+.|++. |++|+|||+.+..++.... +++..........+.... +. ..+. .. ..+
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPPIPGNHTY--GVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCCCCccc--cccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 899999999999999999999 9999999998766543211 111110000000011111 10 0000 00 011
Q ss_pred -EEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 165 -VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 165 -~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
....+...+.+.|.+.+. +.|++++. .+|..+..+++....|.+. +..+++|+.||+|+|..+
T Consensus 78 ~~~~i~~~~l~~~l~~~~~-~~gv~~~~-~~v~~i~~~~~~~~~v~~~--------------~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCP-EGGVLWLE-RKAIHAEADGVALSTVYCA--------------GGQRIQARLVIDARGFGP 141 (388)
T ss_pred ceeEEcHHHHHHHHHHHHH-hcCcEEEc-cEEEEEEecCCceeEEEeC--------------CCCEEEeCEEEECCCCch
Confidence 113456677788877775 55898874 4788887663433334442 235799999999999776
No 161
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.08 E-value=1.4e-09 Score=108.43 Aligned_cols=124 Identities=20% Similarity=0.257 Sum_probs=75.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc-CCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV-SPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKH 169 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~-~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 169 (359)
+|||+|||||++|+.+|+.|+++ |.+|+|||+.+ ..||.|...|+.+...+.+... ....|... ..+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~------~~~~~~~~-----~~~ 70 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ------QHTDFVRA-----IQR 70 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCCccceeEeeccccchHHHHHHhc------cCCCHHHH-----HHH
Confidence 59999999999999999999999 99999999976 4788888777766543322110 01111000 000
Q ss_pred hHHHHHH----HHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 170 AALFTST----IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 170 ~~~~~~~----L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
....... ....+.+..|++++.+ ++..+ +.+.+. |...+ ...++.+|.||+|||...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i--~~~~~~-v~~~~-------------g~~~~~~d~lviATGs~p 131 (441)
T PRK08010 71 KNEVVNFLRNKNFHNLADMPNIDVIDG-QAEFI--NNHSLR-VHRPE-------------GNLEIHGEKIFINTGAQT 131 (441)
T ss_pred HHHHHHHHHHhHHHHHhhcCCcEEEEE-EEEEe--cCCEEE-EEeCC-------------CeEEEEeCEEEEcCCCcC
Confidence 1111111 1233334458998876 34433 333332 32211 113699999999999754
No 162
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.08 E-value=2.2e-09 Score=109.16 Aligned_cols=136 Identities=24% Similarity=0.336 Sum_probs=87.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc---CCcceeehhcc------hhHHHHHHHcCCcceec-
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL---GGQLFSAMVVR------KPAQRFLDELGVEYDEQ- 161 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~---~g~~~~~~~~~------~~~~~~l~~~G~~~~~~- 161 (359)
|||+|||+|++|+.+|..+++. |.+|+|+|+....+|.+.. .|+.....+.+ ....+..+..++.|...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln 79 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLN 79 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecc
Confidence 6999999999999999999999 9999999997543332211 11111111111 11223334444444322
Q ss_pred ---CCeE----EEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe-CCEEEEEEEceeeeeccCCCCCCCCCeEEEcC
Q 018188 162 ---DNYV----VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK 233 (359)
Q Consensus 162 ---~~~~----~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~ 233 (359)
+... ...+...+...+.+.+.+..|++++.+ .|+++..+ ++++.+|.+.+ +..+.|+
T Consensus 80 ~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~--------------G~~I~Ad 144 (617)
T TIGR00136 80 SSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD--------------GLKFRAK 144 (617)
T ss_pred cCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC--------------CCEEECC
Confidence 0111 123445566676666665568998766 78888766 67888888752 3579999
Q ss_pred EEEEcCCCCC
Q 018188 234 IVVSSCGHDG 243 (359)
Q Consensus 234 ~VIlAtGg~s 243 (359)
.||+|||.+.
T Consensus 145 ~VILATGtfL 154 (617)
T TIGR00136 145 AVIITTGTFL 154 (617)
T ss_pred EEEEccCccc
Confidence 9999999883
No 163
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.07 E-value=7.7e-10 Score=111.08 Aligned_cols=52 Identities=29% Similarity=0.432 Sum_probs=46.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVR 144 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~ 144 (359)
+|||+|||||++|+.||+.|++. |.+|+|||++ .+||.|...|+++.+..++
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~-~~GG~c~~~gciPsk~l~~ 55 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKK-YWGGVCLNVGCIPSKALLR 55 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-CCCCceecCCccccHHHHh
Confidence 48999999999999999999999 9999999985 6899999999888766554
No 164
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.07 E-value=3.3e-09 Score=106.85 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHHHhC----CC--cEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCC
Q 018188 169 HAALFTSTIMSKLLAR----PN--VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD 242 (359)
Q Consensus 169 ~~~~~~~~L~~~~~~~----~g--v~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~ 242 (359)
+...+...|.+.+. + .| ++++++++|++|..+++.+..|.+. ..+++|+.||+|+|++
T Consensus 209 d~~~L~~al~~~a~-~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~---------------~G~i~A~~VVvaAG~~ 272 (497)
T PTZ00383 209 DYQKLSESFVKHAR-RDALVPGKKISINLNTEVLNIERSNDSLYKIHTN---------------RGEIRARFVVVSACGY 272 (497)
T ss_pred CHHHHHHHHHHHHH-hhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEEC---------------CCEEEeCEEEECcChh
Confidence 44566777777775 4 56 8899999999998875555556553 2479999999999976
Q ss_pred C
Q 018188 243 G 243 (359)
Q Consensus 243 s 243 (359)
+
T Consensus 273 S 273 (497)
T PTZ00383 273 S 273 (497)
T ss_pred H
Confidence 5
No 165
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.06 E-value=7.1e-10 Score=111.09 Aligned_cols=133 Identities=20% Similarity=0.300 Sum_probs=80.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcch-hHHHH---HHHcCCcceec-CCeEE
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRK-PAQRF---LDELGVEYDEQ-DNYVV 166 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~-~~~~~---l~~~G~~~~~~-~~~~~ 166 (359)
|||+|||||++|+.+|+.|++. |.+|+|||+ ..+||.|...|+.+...+... ...+. +..+|+..... -.+..
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQL-GLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK 79 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-CCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence 8999999999999999999999 999999999 788999988888776554432 12222 34455533210 00100
Q ss_pred E-echHHHHHH---HHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCC
Q 018188 167 I-KHAALFTST---IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD 242 (359)
Q Consensus 167 ~-~~~~~~~~~---L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~ 242 (359)
. .+...+... -.....++.|++++.+. +.. .+.+.+. +... + ...++++|+||+|||..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~--~~~~~~~-v~~~--------~-----g~~~~~~d~lVlAtG~~ 142 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGE-AKF--LDPGTVL-VTGE--------N-----GEETLTAKNIIIATGSR 142 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--ccCCEEE-EecC--------C-----CcEEEEeCEEEEcCCCC
Confidence 0 000111111 12334456789988774 222 2333332 2211 0 12579999999999965
Q ss_pred C
Q 018188 243 G 243 (359)
Q Consensus 243 s 243 (359)
.
T Consensus 143 p 143 (461)
T TIGR01350 143 P 143 (461)
T ss_pred C
Confidence 4
No 166
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.05 E-value=1.5e-09 Score=109.39 Aligned_cols=136 Identities=19% Similarity=0.235 Sum_probs=85.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc--------CCCCCcccCCcceeehhcchhHH-H---HHHHcCCcc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV--------SPGGGAWLGGQLFSAMVVRKPAQ-R---FLDELGVEY 158 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~--------~~GG~~~~~g~~~~~~~~~~~~~-~---~l~~~G~~~ 158 (359)
+|||||||+|++|+.+|+.|++. |.+|+|||+.. ..||.|.+.|+++.+.++..... + ....+|+.+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCccc
Confidence 48999999999999999999999 99999999741 47999999999998876654321 2 233456654
Q ss_pred eec--CCeEE-EechHHHHHHH---HHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEc
Q 018188 159 DEQ--DNYVV-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA 232 (359)
Q Consensus 159 ~~~--~~~~~-~~~~~~~~~~L---~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A 232 (359)
... -+|.. ..+.......+ .....+..|++++.+.- ...+.+.+. |... ++...++++
T Consensus 81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a---~f~~~~~v~-v~~~------------~g~~~~~~~ 144 (484)
T TIGR01438 81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA---EFVDKHRIK-ATNK------------KGKEKIYSA 144 (484)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE---EEcCCCEEE-Eecc------------CCCceEEEe
Confidence 321 11111 11112222222 22334567999987742 112334332 2111 112357999
Q ss_pred CEEEEcCCCCC
Q 018188 233 KIVVSSCGHDG 243 (359)
Q Consensus 233 ~~VIlAtGg~s 243 (359)
|+||+|||...
T Consensus 145 d~lVIATGs~p 155 (484)
T TIGR01438 145 ERFLIATGERP 155 (484)
T ss_pred CEEEEecCCCC
Confidence 99999999754
No 167
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.04 E-value=1.3e-09 Score=109.24 Aligned_cols=52 Identities=37% Similarity=0.456 Sum_probs=45.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVR 144 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~ 144 (359)
+|||||||||++|+.+|..|++. |.+|+|||+ ...||.+...|+.+.+.+..
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~-~~~GG~~~~~gc~psk~l~~ 54 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-GKKVALIEK-GPLGGTCLNVGCIPSKALIA 54 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEeC-CccccceeccceeeHHHHHH
Confidence 49999999999999999999999 999999999 67899888888877665544
No 168
>PRK14727 putative mercuric reductase; Provisional
Probab=99.02 E-value=3e-09 Score=107.17 Aligned_cols=55 Identities=29% Similarity=0.415 Sum_probs=49.3
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcch
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRK 145 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~ 145 (359)
.+|||+|||+|++|+.+|+.|++. |.+|+|+|+...+||.|.+.|+.+...++..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~ 69 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADVIGGCCVNVGCVPSKILIRA 69 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCcceeEeccccccccHHHHHH
Confidence 358999999999999999999999 9999999998889999999898887766553
No 169
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.01 E-value=4.6e-09 Score=106.80 Aligned_cols=114 Identities=23% Similarity=0.283 Sum_probs=77.4
Q ss_pred cCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEe
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIK 168 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~ 168 (359)
...|||+|||||++|+++|.+|++. |++|+|+++. +||.....-.+.+ -.+++ ..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~-G~~v~li~~~--~GG~~~~~~~~~~-------------~~~~~---------~~ 263 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK-GIRTGIVAER--FGGQVLDTMGIEN-------------FISVP---------ET 263 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecC--CCCeeeccCcccc-------------cCCCC---------CC
Confidence 3469999999999999999999999 9999999864 6654321100000 00111 01
Q ss_pred chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 169 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 169 ~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
...++.+.+.+.+. +.|++++++++|+++..+++.+. +... +..++.++.||+|||...
T Consensus 264 ~~~~l~~~l~~~~~-~~gv~i~~~~~V~~I~~~~~~~~-V~~~--------------~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 264 EGPKLAAALEEHVK-EYDVDIMNLQRASKLEPAAGLIE-VELA--------------NGAVLKAKTVILATGARW 322 (517)
T ss_pred CHHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCeEE-EEEC--------------CCCEEEcCEEEECCCCCc
Confidence 23455666666654 67899999999999977654332 3332 135799999999999754
No 170
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.99 E-value=1.2e-08 Score=102.85 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=33.6
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPG 128 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~G 128 (359)
.+||+|||||+.|+++|++|++. +|.+|+||||...+|
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a 43 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVA 43 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchh
Confidence 48999999999999999999984 589999999987543
No 171
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.99 E-value=3.3e-09 Score=99.91 Aligned_cols=61 Identities=30% Similarity=0.445 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCcEEEcceeeeeEEEe--CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 175 STIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 175 ~~L~~~~~~~~gv~i~~~~~V~~l~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
..++..+.++.|++|+.++.|++|..+ ++++++|...+. ++. .....+.++.||+|.|+.+
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~------~~~--~~~~~~~ak~VIlaAGai~ 258 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDN------DGG--VQRRIVAAKEVILAAGAIG 258 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEET------TTS--EEEEEEEEEEEEE-SHHHH
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeec------CCc--ceeeeccceeEEeccCCCC
Confidence 444555555669999999999999876 679999988531 110 0135678999999999654
No 172
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.99 E-value=3.1e-09 Score=98.28 Aligned_cols=140 Identities=24% Similarity=0.328 Sum_probs=93.3
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccC-----C-c--------------cee-------------
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLG-----G-Q--------------LFS------------- 139 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~-----g-~--------------~~~------------- 139 (359)
.|||||+|.|||+++..+-.. |-.|+++|+....||++... | + +|.
T Consensus 11 pvvVIGgGLAGLsasn~iin~-gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~ 89 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK-GGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVP 89 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc-CCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcH
Confidence 699999999999999999887 66699999999999886421 1 0 000
Q ss_pred ----ehh-cchhHHHHHHH-cCCcceec---CCe--EE-------EechHHHHHHHHHHH----HhCCC-cEEEcceeee
Q 018188 140 ----AMV-VRKPAQRFLDE-LGVEYDEQ---DNY--VV-------IKHAALFTSTIMSKL----LARPN-VKLFNAVAAE 196 (359)
Q Consensus 140 ----~~~-~~~~~~~~l~~-~G~~~~~~---~~~--~~-------~~~~~~~~~~L~~~~----~~~~g-v~i~~~~~V~ 196 (359)
.+. ....+.+||+. +++..+.. ... ++ .....+++..|..++ .+++. ++|..+++|+
T Consensus 90 eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv 169 (477)
T KOG2404|consen 90 ELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVV 169 (477)
T ss_pred HHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceee
Confidence 000 11246688875 66654421 000 00 111223344443333 22333 8899999999
Q ss_pred eEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 197 DLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 197 ~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+|..++++|.||+..+ .+++...+.++.||+||||++
T Consensus 170 ~il~n~gkVsgVeymd----------~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 170 DILRNNGKVSGVEYMD----------ASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred eeecCCCeEEEEEEEc----------CCCCccceecCceEEecCCcC
Confidence 9998899999998753 234567889999999999987
No 173
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.99 E-value=1.7e-09 Score=109.44 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=45.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc--------CCCCCcccCCcceeehhcc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV--------SPGGGAWLGGQLFSAMVVR 144 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~--------~~GG~~~~~g~~~~~~~~~ 144 (359)
.|||+||||||+|+.||+.|++. |++|+|||+.. .+||.|.+.|+.+.+.+..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~ 65 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHY 65 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEeccCCCCccccccccceeccccccchHHHHH
Confidence 48999999999999999999999 99999999731 4799999989888765544
No 174
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.99 E-value=3.8e-09 Score=103.11 Aligned_cols=130 Identities=22% Similarity=0.315 Sum_probs=78.9
Q ss_pred cEEEECCChHHHHHHHHh--hcCCCCeEEEEeeccCCC--CCcccCCcceeehhcchhHHHHHH----HcCCcceec---
Q 018188 93 DVIVVGAGSAGLSCAYEI--SKNPSIRVAIIEQSVSPG--GGAWLGGQLFSAMVVRKPAQRFLD----ELGVEYDEQ--- 161 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~L--a~~~G~~V~vlEk~~~~G--G~~~~~g~~~~~~~~~~~~~~~l~----~~G~~~~~~--- 161 (359)
||||||||+||+++|++| ++. |.+|+|||+....+ ... ..+.+...... ..+.+. .+-+.+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~~~~~~~--tW~~~~~~~~~--~~~~v~~~w~~~~v~~~~~~~~ 75 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKPPWPNDR--TWCFWEKDLGP--LDSLVSHRWSGWRVYFPDGSRI 75 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccccccCCc--ccccccccccc--hHHHHheecCceEEEeCCCceE
Confidence 899999999999999999 777 99999999987652 211 11111111100 111111 111111111
Q ss_pred -CCeE-EEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcC
Q 018188 162 -DNYV-VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSC 239 (359)
Q Consensus 162 -~~~~-~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAt 239 (359)
..+. ...+...+.+.+.+++. ..+ .++.+.+|.++..+++.+. |.+. ++.+++|+.||+|+
T Consensus 76 ~~~~~Y~~i~~~~f~~~l~~~~~-~~~-~~~~~~~V~~i~~~~~~~~-v~~~--------------~g~~i~a~~VvDa~ 138 (374)
T PF05834_consen 76 LIDYPYCMIDRADFYEFLLERAA-AGG-VIRLNARVTSIEETGDGVL-VVLA--------------DGRTIRARVVVDAR 138 (374)
T ss_pred EcccceEEEEHHHHHHHHHHHhh-hCC-eEEEccEEEEEEecCceEE-EEEC--------------CCCEEEeeEEEECC
Confidence 1111 23466677788877775 444 5667779999987765332 3332 23689999999999
Q ss_pred CCCCC
Q 018188 240 GHDGP 244 (359)
Q Consensus 240 Gg~s~ 244 (359)
|..+.
T Consensus 139 g~~~~ 143 (374)
T PF05834_consen 139 GPSSP 143 (374)
T ss_pred Ccccc
Confidence 96544
No 175
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=1.9e-09 Score=106.25 Aligned_cols=136 Identities=27% Similarity=0.401 Sum_probs=90.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc--------CCcceeehh-cchhHHHHHHHcCCcceec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL--------GGQLFSAMV-VRKPAQRFLDELGVEYDEQ 161 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~--------~g~~~~~~~-~~~~~~~~l~~~G~~~~~~ 161 (359)
.|||+|||||.||+.||+.+++. |.+++|+--+...=|.+-+ -|.+....- +-..+-+..++.+++|...
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L 82 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML 82 (621)
T ss_pred CCceEEECCCccchHHHHhhhcc-CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence 49999999999999999999999 9999999865422111111 112222111 1123445666777777532
Q ss_pred C--CeE------EEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCC-EEEEEEEceeeeeccCCCCCCCCCeEEEc
Q 018188 162 D--NYV------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEA 232 (359)
Q Consensus 162 ~--~~~------~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~A 232 (359)
. ..+ .+.+...|...+.+.+....|+.++.+ .|++++.+++ +|.||++. ++..|.|
T Consensus 83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~--------------~G~~~~a 147 (621)
T COG0445 83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTA--------------DGPEFHA 147 (621)
T ss_pred cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeC--------------CCCeeec
Confidence 1 111 122333455555556666789999887 7889988766 69999886 3478999
Q ss_pred CEEEEcCCCC
Q 018188 233 KIVVSSCGHD 242 (359)
Q Consensus 233 ~~VIlAtGg~ 242 (359)
+.||++||.+
T Consensus 148 ~aVVlTTGTF 157 (621)
T COG0445 148 KAVVLTTGTF 157 (621)
T ss_pred CEEEEeeccc
Confidence 9999999954
No 176
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.97 E-value=5.9e-09 Score=104.46 Aligned_cols=132 Identities=17% Similarity=0.316 Sum_probs=82.7
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh-HH---HHHHHcCCcceec---CCeE
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AQ---RFLDELGVEYDEQ---DNYV 165 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~-~~---~~l~~~G~~~~~~---~~~~ 165 (359)
+|+|||+|++|+.+|..|++. |++|+||||. ..||.|.+.|+.+.+.+++.. .. +....+|+.+... .+|.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHH
Confidence 699999999999999999999 9999999997 579999999999887765532 22 2234567654211 1111
Q ss_pred EE-echHHHHHHH---HHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCC
Q 018188 166 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGH 241 (359)
Q Consensus 166 ~~-~~~~~~~~~L---~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg 241 (359)
.. .+.....+.+ .+...++.+++++.+. +..+ +++.+. |.... ...++++|+||+|||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~~~v~-v~~~~-------------~~~~~~~d~lviATGs 142 (458)
T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFE--TDHRVR-VEYGD-------------KEEVVDAEQFIIAAGS 142 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc--cCCEEE-EeeCC-------------CcEEEECCEEEEeCCC
Confidence 10 1111111211 2233346688887773 3222 344432 22210 1257999999999997
Q ss_pred CC
Q 018188 242 DG 243 (359)
Q Consensus 242 ~s 243 (359)
..
T Consensus 143 ~p 144 (458)
T PRK06912 143 EP 144 (458)
T ss_pred CC
Confidence 64
No 177
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.97 E-value=1.2e-08 Score=103.75 Aligned_cols=114 Identities=21% Similarity=0.320 Sum_probs=76.1
Q ss_pred cCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEe
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIK 168 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~ 168 (359)
...|||+|||||++|++||+.|++. |.+|+|+|. .+||.......+.+ -.+.+. .
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~-G~~v~li~~--~~GG~~~~~~~~~~-------------~~~~~~---------~ 264 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK-GLRTAMVAE--RIGGQVKDTVGIEN-------------LISVPY---------T 264 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEec--CCCCccccCcCccc-------------ccccCC---------C
Confidence 4469999999999999999999999 999999985 35653321100000 001110 1
Q ss_pred chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 169 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 169 ~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
....+.+.+.+.+. +.|++++.+++|.++..+++.+. +... +...+.+|.+|+|||...
T Consensus 265 ~~~~l~~~l~~~l~-~~gv~i~~~~~V~~I~~~~~~~~-v~~~--------------~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 265 TGSQLAANLEEHIK-QYPIDLMENQRAKKIETEDGLIV-VTLE--------------SGEVLKAKSVIVATGARW 323 (515)
T ss_pred CHHHHHHHHHHHHH-HhCCeEEcCCEEEEEEecCCeEE-EEEC--------------CCCEEEeCEEEECCCCCc
Confidence 23345566655554 57999999999999876654332 3332 135799999999999753
No 178
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.96 E-value=1.3e-08 Score=102.84 Aligned_cols=39 Identities=36% Similarity=0.666 Sum_probs=36.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
+||||||+|++||++|..|+++ |.+|+|+||+..+||.+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~-G~~V~vlE~~~~~GG~~ 39 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVK-GAKVLVLERYLIPGGSA 39 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHC-CCcEEEEECCCCCCCce
Confidence 5999999999999999999999 99999999999998765
No 179
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.95 E-value=2.7e-09 Score=110.65 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=49.7
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeec-cCCCCCcccCCcceeehhcch
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQS-VSPGGGAWLGGQLFSAMVVRK 145 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~-~~~GG~~~~~g~~~~~~~~~~ 145 (359)
.+|||+|||+|++|..+|+.+++. |++|+|||+. ..+||+|.+.|+++.+.++..
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~ 170 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGDDDSIGGTCVNVGCIPSKALLYA 170 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCccccceeEeCCcchHHHHHH
Confidence 369999999999999999999999 9999999975 368999999999999877664
No 180
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.95 E-value=7.6e-09 Score=100.82 Aligned_cols=40 Identities=35% Similarity=0.685 Sum_probs=35.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
++||+|||||++|+++|++|++. |.+|+|+|+....+|++
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~~g~s 43 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAGGGAA 43 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccCCcch
Confidence 48999999999999999999999 99999999998665444
No 181
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.94 E-value=8.9e-09 Score=105.58 Aligned_cols=111 Identities=19% Similarity=0.282 Sum_probs=71.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
.|||+|||||++|++||+.|++. |.+|+|+|+. ..||.+.......+. .+. . ....
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~-~~GG~~~~~~~i~~~-------------pg~--------~-~~~~ 59 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKD-DFGGQITITSEVVNY-------------PGI--------L-NTTG 59 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecC-CCCceEEeccccccC-------------CCC--------c-CCCH
Confidence 48999999999999999999999 9999999996 566643321110000 000 0 0122
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
..+.+.+.+.+ ++.|++++ +++|+.+..+++ ...+... ...+.++.||+|||+..
T Consensus 60 ~~l~~~l~~~~-~~~gv~~~-~~~V~~i~~~~~-~~~V~~~---------------~g~~~a~~lVlATGa~p 114 (555)
T TIGR03143 60 PELMQEMRQQA-QDFGVKFL-QAEVLDVDFDGD-IKTIKTA---------------RGDYKTLAVLIATGASP 114 (555)
T ss_pred HHHHHHHHHHH-HHcCCEEe-ccEEEEEEecCC-EEEEEec---------------CCEEEEeEEEECCCCcc
Confidence 34455554444 36789986 567888765443 2223332 24588999999999865
No 182
>PRK10262 thioredoxin reductase; Provisional
Probab=98.94 E-value=1.2e-08 Score=97.28 Aligned_cols=115 Identities=10% Similarity=0.149 Sum_probs=70.4
Q ss_pred ccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEE
Q 018188 88 TYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVI 167 (359)
Q Consensus 88 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~ 167 (359)
.+..+||+||||||+|+.||+.|+++ |.+|+++|+. ..||........+. ++. ....
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~-g~~~~~ie~~-~~gg~~~~~~~~~~----------------~~~-----~~~~ 59 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGM-EKGGQLTTTTEVEN----------------WPG-----DPND 59 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHC-CCCeEEEEee-cCCCceecCceECC----------------CCC-----CCCC
Confidence 34568999999999999999999999 9999999965 55654322111100 000 0000
Q ss_pred echHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 168 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 168 ~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.....+.+.+.+.. ...+.+++.+ +|..+...++.+. +... ...+.+|.||+|||...
T Consensus 60 ~~~~~~~~~~~~~~-~~~~~~~~~~-~v~~v~~~~~~~~-v~~~---------------~~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 60 LTGPLLMERMHEHA-TKFETEIIFD-HINKVDLQNRPFR-LTGD---------------SGEYTCDALIIATGASA 117 (321)
T ss_pred CCHHHHHHHHHHHH-HHCCCEEEee-EEEEEEecCCeEE-EEec---------------CCEEEECEEEECCCCCC
Confidence 12223344444443 3556777665 5666665555432 2111 24689999999999764
No 183
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.93 E-value=1.6e-08 Score=100.02 Aligned_cols=125 Identities=22% Similarity=0.340 Sum_probs=77.6
Q ss_pred cEEEECCChHHHHHHHHhhcCCC-CeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc--------------
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPS-IRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE-------------- 157 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G-~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~-------------- 157 (359)
+|+|||||++||++|+.|+++ | ++|+|+||.+.++.. +.+ ..+.+...+.|+++|+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~~~~~---G~g----i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 73 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPAFGEV---GAG----VSFGANAVRAIVGLGLGEAYTQVADSTPAPW 73 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCcCCCC---ccc----eeeCccHHHHHHHcCChhHHHHHhcCCCccC
Confidence 599999999999999999998 7 699999998765321 111 11223334444444431
Q ss_pred ----ce--ecC--CeE----------EEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccC
Q 018188 158 ----YD--EQD--NYV----------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 219 (359)
Q Consensus 158 ----~~--~~~--~~~----------~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~ 219 (359)
+. ... .+. ...+...+.+.|++.+ .+..++++++|+++..+++.+. +...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~---~~~~v~~~~~v~~i~~~~~~~~-v~~~-------- 141 (414)
T TIGR03219 74 QDIWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHL---PEGIASFGKRATQIEEQAEEVQ-VLFT-------- 141 (414)
T ss_pred cceeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhC---CCceEEcCCEEEEEEecCCcEE-EEEc--------
Confidence 00 000 000 0123344555554443 2466889999999987766543 3332
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 220 DTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 220 ~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+..++++|.||.|+|.+|
T Consensus 142 ------~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 142 ------DGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ------CCCEEEeeEEEECCCccH
Confidence 135799999999999766
No 184
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.93 E-value=2e-08 Score=100.93 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=33.7
Q ss_pred CcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPG 128 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~G 128 (359)
..+||||||||++|+++|+.|++. |+.+|+|+||.+.+|
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 358999999999999999999984 689999999944554
No 185
>PRK07846 mycothione reductase; Reviewed
Probab=98.92 E-value=5.2e-09 Score=104.68 Aligned_cols=128 Identities=22% Similarity=0.249 Sum_probs=78.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh-HHHH---HHHcCCccee-cCCeEE
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AQRF---LDELGVEYDE-QDNYVV 166 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~-~~~~---l~~~G~~~~~-~~~~~~ 166 (359)
|||||||+|++|..+|.. .. |++|+|||+. .+||.|.+.|+.+.+.+++.. ..+. ..++|+.... .-+|..
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~-G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FA-DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPD 77 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HC-CCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHH
Confidence 899999999999999876 35 9999999985 689999999999988776542 2222 2345654211 001110
Q ss_pred -EechHHHHHHHH----HHH-HhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCC
Q 018188 167 -IKHAALFTSTIM----SKL-LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCG 240 (359)
Q Consensus 167 -~~~~~~~~~~L~----~~~-~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtG 240 (359)
..+.....+.+. ... .+..|++++.+.... .++..|. +. +..++++|+||+|||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~---~~~~~V~---v~--------------~g~~~~~d~lViATG 137 (451)
T PRK07846 78 IVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARF---IGPKTLR---TG--------------DGEEITADQVVIAAG 137 (451)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEE---ecCCEEE---EC--------------CCCEEEeCEEEEcCC
Confidence 111111222221 111 345688888774221 2334332 22 124799999999999
Q ss_pred CCC
Q 018188 241 HDG 243 (359)
Q Consensus 241 g~s 243 (359)
+..
T Consensus 138 s~p 140 (451)
T PRK07846 138 SRP 140 (451)
T ss_pred CCC
Confidence 754
No 186
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.92 E-value=8.8e-09 Score=103.45 Aligned_cols=135 Identities=21% Similarity=0.333 Sum_probs=84.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh-HH---HHHHHcCCccee----cCC
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AQ---RFLDELGVEYDE----QDN 163 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~-~~---~~l~~~G~~~~~----~~~ 163 (359)
.||+|||+|++|+.+|..|++. |.+|+|+||.. .||.|.+.|+.+.+.++... .. +....+|+.... .-+
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQL-GADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 3899999999999999999999 99999999874 79999999998877655432 22 233456664320 011
Q ss_pred eEEE-echHHHH----HHHHHHHHhCCCcEEEcceeeeeEE--EeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEE
Q 018188 164 YVVI-KHAALFT----STIMSKLLARPNVKLFNAVAAEDLI--VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVV 236 (359)
Q Consensus 164 ~~~~-~~~~~~~----~~L~~~~~~~~gv~i~~~~~V~~l~--~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VI 236 (359)
|... .+...+. ..+.+.+ ++.|++++.++ +..+. .+++.+. |... ++...++.+|+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l-~~~gV~~~~g~-~~~~~~~~~~~~v~-V~~~------------~g~~~~~~~d~lV 144 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARL-EREGVRVIAGR-GRLIDPGLGPHRVK-VTTA------------DGGEETLDADVVL 144 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEEEE-EEEeecccCCCEEE-EEeC------------CCceEEEecCEEE
Confidence 1111 1111111 2222233 46799999884 33322 2334432 3221 1112479999999
Q ss_pred EcCCCCC
Q 018188 237 SSCGHDG 243 (359)
Q Consensus 237 lAtGg~s 243 (359)
+|||...
T Consensus 145 iATGs~p 151 (466)
T PRK07845 145 IATGASP 151 (466)
T ss_pred EcCCCCC
Confidence 9999765
No 187
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.92 E-value=1.2e-08 Score=102.01 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=47.1
Q ss_pred eEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe-CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCC
Q 018188 164 YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD 242 (359)
Q Consensus 164 ~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~ 242 (359)
+.+..+...|.+.|.+.+. +.|++++.+ +|+++..+ ++.+.+|.+. ++.+++||+||+|||..
T Consensus 147 ~ayhlDR~~fd~~L~~~A~-~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~--------------~g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 147 YAYHLDRAKFDQFLRRHAE-ERGVEVIEG-TVVDVELDEDGRITAVRLD--------------DGRTIEADFFIDASGRR 210 (454)
T ss_dssp -EEEEEHHHHHHHHHHHHH-HTT-EEEET--EEEEEE-TTSEEEEEEET--------------TSEEEEESEEEE-SGGG
T ss_pred eeEEEeHHHHHHHHHHHHh-cCCCEEEeC-EEEEEEEcCCCCEEEEEEC--------------CCCEEEEeEEEECCCcc
Confidence 4556677788888888776 569999988 57777765 5677788774 24789999999999976
Q ss_pred CCCC
Q 018188 243 GPFG 246 (359)
Q Consensus 243 s~~~ 246 (359)
+.+.
T Consensus 211 s~L~ 214 (454)
T PF04820_consen 211 SLLA 214 (454)
T ss_dssp -CCC
T ss_pred chhh
Confidence 6543
No 188
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.92 E-value=2.5e-08 Score=100.82 Aligned_cols=41 Identities=27% Similarity=0.551 Sum_probs=36.8
Q ss_pred cccEEEECCChHHHHHHHHhhcC---CCCeEEEEeeccCCCCCc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKN---PSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~---~G~~V~vlEk~~~~GG~~ 131 (359)
..+|+|||||++||+||+.|.+. +|.+|+|+|+.+.+||..
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 36899999999999999999985 378999999999999875
No 189
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.91 E-value=3.4e-08 Score=102.07 Aligned_cols=130 Identities=19% Similarity=0.291 Sum_probs=79.2
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCC--CCCcccCCcceeehhcchhHHHHHHHcCCc----------
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSP--GGGAWLGGQLFSAMVVRKPAQRFLDELGVE---------- 157 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~--GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------- 157 (359)
...+|+|||||++|+++|+.|+++ |++|+|+||.... +.+.+. ..+.+.....+.|+++|+.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~~~~r~~G~~~-----~~I~L~pngl~aLe~LGl~~~e~l~~~g~ 153 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDLSAIRGEGKYR-----GPIQIQSNALAALEAIDIDVAEQVMEAGC 153 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccccccccccccC-----cccccCHHHHHHHHHcCcchHHHHHhhcC
Confidence 458999999999999999999999 9999999997521 111010 1122333333444443320
Q ss_pred --------c-ee-cC-----------------CeEEEechHHHHHHHHHHHHhCCCc-EEEcceeeeeEEEeCCEEEEEE
Q 018188 158 --------Y-DE-QD-----------------NYVVIKHAALFTSTIMSKLLARPNV-KLFNAVAAEDLIVKGGRVGGVV 209 (359)
Q Consensus 158 --------~-~~-~~-----------------~~~~~~~~~~~~~~L~~~~~~~~gv-~i~~~~~V~~l~~~~~~v~gv~ 209 (359)
+ +. .+ .+.+..+...+.+.|.+. .+. .++++++|+++..+++.|. +.
T Consensus 154 ~~~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a----lg~~~i~~g~~V~~I~~~~d~Vt-V~ 228 (668)
T PLN02927 154 ITGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA----VGEDVIRNESNVVDFEDSGDKVT-VV 228 (668)
T ss_pred cccceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh----CCCCEEEcCCEEEEEEEeCCEEE-EE
Confidence 0 00 00 001123334444444332 232 4678889999988777765 43
Q ss_pred EceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 210 TNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 210 ~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
.. +..++++|.||.|+|.++.
T Consensus 229 ~~--------------dG~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 229 LE--------------NGQRYEGDLLVGADGIWSK 249 (668)
T ss_pred EC--------------CCCEEEcCEEEECCCCCcH
Confidence 32 2357899999999998774
No 190
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.90 E-value=2.2e-08 Score=101.01 Aligned_cols=40 Identities=35% Similarity=0.612 Sum_probs=37.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
.+||||||||+.||+||..|+++ |++|+|+||+..+||.+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCcce
Confidence 48999999999999999999999 99999999999998754
No 191
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.88 E-value=4.3e-08 Score=99.36 Aligned_cols=37 Identities=41% Similarity=0.700 Sum_probs=35.0
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 94 VIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 94 VvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
|||||||++||+||..|++. |.+|+|+|++..+||.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~-G~~V~VlE~~~~~GG~~ 37 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAA-GIPVTVVEQRDKPGGRA 37 (502)
T ss_pred CEEECcCHHHHHHHHHHHhC-CCcEEEEECCCCCcCce
Confidence 69999999999999999999 99999999999998764
No 192
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.88 E-value=4.1e-08 Score=91.45 Aligned_cols=152 Identities=27% Similarity=0.370 Sum_probs=92.9
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc--CCCCCc-ccCCcceee-------------------------h
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV--SPGGGA-WLGGQLFSA-------------------------M 141 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~--~~GG~~-~~~g~~~~~-------------------------~ 141 (359)
.++||+|||+|.+||.+|.+|+.. |.+|+|+|+.. .+||.. |.-|++|-. .
T Consensus 4 ~~~dvivvgaglaglvaa~elA~a-G~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~ 82 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAA 82 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhc-CceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhcccc
Confidence 358999999999999999999999 99999999875 345443 443433210 0
Q ss_pred ------------------hcchhHHHHHHHcCCcceec------C------------CeEEE-ech----HHHHHHHHHH
Q 018188 142 ------------------VVRKPAQRFLDELGVEYDEQ------D------------NYVVI-KHA----ALFTSTIMSK 180 (359)
Q Consensus 142 ------------------~~~~~~~~~l~~~G~~~~~~------~------------~~~~~-~~~----~~~~~~L~~~ 180 (359)
+...+...||...|+.|-.. . .|.+. ... .-|.+.+. +
T Consensus 83 FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pFvr~~r-e 161 (552)
T COG3573 83 FDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPFVRRLR-E 161 (552)
T ss_pred cCCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcccCCCCCCCcceEEeecCCcchhhHHHHHHH-H
Confidence 00013346777777654321 0 11111 111 23444433 3
Q ss_pred HHhCCCcEEEcceeeeeEEEeCCEEEEEEEcee-eeeccCCCCC---CCCCeEEEcCEEEEcCCCCC
Q 018188 181 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWA-LVSMNHDTQS---CMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 181 ~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~-~~~~~~~~~~---~g~~~~i~A~~VIlAtGg~s 243 (359)
+.++.-+++.+.++|..+...+++|+||.-.-- ......+... -....++.|..||+++|+.+
T Consensus 162 ~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGIG 228 (552)
T COG3573 162 AQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGIG 228 (552)
T ss_pred HHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCcC
Confidence 334666999999999999999999998753200 0000000000 00125789999999999987
No 193
>PRK09897 hypothetical protein; Provisional
Probab=98.87 E-value=4.3e-08 Score=99.40 Aligned_cols=138 Identities=17% Similarity=0.317 Sum_probs=82.6
Q ss_pred ccEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCC-cccCCc---ce--e-----ehhcchhHHHHHHH------
Q 018188 92 TDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGG-AWLGGQ---LF--S-----AMVVRKPAQRFLDE------ 153 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~-~~~~g~---~~--~-----~~~~~~~~~~~l~~------ 153 (359)
.+|+|||||++|+++|.+|.+. ..++|+|+|++..+|.+ .|.... .+ + .........+|+..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 4799999999999999999874 14689999998888844 343311 10 1 01112344556543
Q ss_pred --cCCcceecC--CeEEEechHHHHH----HHHHHHHhCCC--cEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCC
Q 018188 154 --LGVEYDEQD--NYVVIKHAALFTS----TIMSKLLARPN--VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQS 223 (359)
Q Consensus 154 --~G~~~~~~~--~~~~~~~~~~~~~----~L~~~~~~~~g--v~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~ 223 (359)
++++....+ .|......+.|+. .+.+.+. ..| ++++.+++|+++..+++.+. +....
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~-~~G~~V~v~~~~~V~~I~~~~~g~~-V~t~~----------- 148 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQAR-QQKFAVAVYESCQVTDLQITNAGVM-LATNQ----------- 148 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHH-HcCCeEEEEECCEEEEEEEeCCEEE-EEECC-----------
Confidence 344332221 2221112223333 3333332 444 78888889999988776543 33311
Q ss_pred CCCCeEEEcCEEEEcCCCCCC
Q 018188 224 CMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 224 ~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+...+.+|.||+|+|+..+
T Consensus 149 --gg~~i~aD~VVLAtGh~~p 167 (534)
T PRK09897 149 --DLPSETFDLAVIATGHVWP 167 (534)
T ss_pred --CCeEEEcCEEEECCCCCCC
Confidence 1357899999999998543
No 194
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.86 E-value=3.3e-08 Score=107.61 Aligned_cols=125 Identities=26% Similarity=0.303 Sum_probs=76.8
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEec
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKH 169 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 169 (359)
..+||+||||||+|++||+.|++. |.+|+|+|+...+||..+.... .++ ...
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~-G~~V~liD~~~~~GG~~~~~~~--------------------~~~-------g~~ 213 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA-GARVILVDEQPEAGGSLLSEAE--------------------TID-------GKP 213 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCCCeeecccc--------------------ccC-------Ccc
Confidence 358999999999999999999999 9999999999888774432110 000 012
Q ss_pred hHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 170 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 170 ~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
..++...+.+++.+..+++++.+++|..+.. ++.+..+...........+........++.++.||+|||+..
T Consensus 214 ~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~ 286 (985)
T TIGR01372 214 AADWAAATVAELTAMPEVTLLPRTTAFGYYD-HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHE 286 (985)
T ss_pred HHHHHHHHHHHHhcCCCcEEEcCCEEEEEec-CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCC
Confidence 2344455666665445799999999988743 233322211100000000000001123689999999999753
No 195
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.86 E-value=4.6e-08 Score=94.67 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCCCchHH
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGV 250 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~~~~g~ 250 (359)
...+..+.+.+. ..|++++++++|++++.+++.+.+|+.. ++.+|.+++||+|.|+.+. .|+
T Consensus 173 ~~vvkni~~~l~-~~G~ei~f~t~VeDi~~~~~~~~~v~~~--------------~g~~i~~~~vvlA~Grsg~---dw~ 234 (486)
T COG2509 173 PKVVKNIREYLE-SLGGEIRFNTEVEDIEIEDNEVLGVKLT--------------KGEEIEADYVVLAPGRSGR---DWF 234 (486)
T ss_pred HHHHHHHHHHHH-hcCcEEEeeeEEEEEEecCCceEEEEcc--------------CCcEEecCEEEEccCcchH---HHH
Confidence 355677766664 7899999999999999998888888775 2478999999999998763 777
Q ss_pred HHHHh-cCC-cccccccccccccchhh
Q 018188 251 KRLKS-IGM-IDSVPGMKALDMNTAED 275 (359)
Q Consensus 251 ~~~~~-~g~-~~~~p~~~~~~~~~~~~ 275 (359)
..+.. .|+ +.+.|.-.++.++.+..
T Consensus 235 ~~l~~K~Gv~~~~~p~dIGVRvE~p~~ 261 (486)
T COG2509 235 EMLHKKLGVKMRAKPFDIGVRVEHPQS 261 (486)
T ss_pred HHHHHhcCcccccCCeeEEEEEecchH
Confidence 77654 476 44455555555554433
No 196
>PRK07233 hypothetical protein; Provisional
Probab=98.84 E-value=5.2e-08 Score=96.33 Aligned_cols=38 Identities=37% Similarity=0.620 Sum_probs=35.9
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
+|+|||||++||+||+.|++. |.+|+|+|+...+||..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCCce
Confidence 589999999999999999999 99999999999999865
No 197
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.84 E-value=2.8e-08 Score=98.39 Aligned_cols=137 Identities=18% Similarity=0.163 Sum_probs=84.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCC-------cceeehhcchhHHHHHHHcCCcceecCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGG-------QLFSAMVVRKPAQRFLDELGVEYDEQDN 163 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g-------~~~~~~~~~~~~~~~l~~~G~~~~~~~~ 163 (359)
..+|+|||||++||++|..|.++ |..|+++||...+||--.... .++..+..+ ...+.+.-..++|...
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn-~pKe~~~~~dfpf~~~-- 81 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTN-LPKEMMGYSDFPFPER-- 81 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCccceEeecCcccccccchhhhhhcc-CChhhhcCCCCCCccc--
Confidence 36999999999999999999999 999999999999987422110 111111111 0112222223344333
Q ss_pred eEEE-echHHHHHHHHHHHHhCCCc--EEEcceeeeeEEEeC-CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcC
Q 018188 164 YVVI-KHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSC 239 (359)
Q Consensus 164 ~~~~-~~~~~~~~~L~~~~~~~~gv--~i~~~~~V~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAt 239 (359)
+... .+..++.+.|...+ ++.++ .|.++++|..+...+ +++... .. +..++ ..+..+|.||+||
T Consensus 82 ~~~~~p~~~e~~~YL~~yA-~~F~l~~~i~f~~~v~~v~~~~~gkW~V~-~~------~~~~~----~~~~ifd~VvVct 149 (448)
T KOG1399|consen 82 DPRYFPSHREVLEYLRDYA-KHFDLLKMINFNTEVVRVDSIDKGKWRVT-TK------DNGTQ----IEEEIFDAVVVCT 149 (448)
T ss_pred CcccCCCHHHHHHHHHHHH-HhcChhhheEecccEEEEeeccCCceeEE-Ee------cCCcc----eeEEEeeEEEEcc
Confidence 2222 34446666654444 46664 688888888887766 555422 21 11111 3567899999999
Q ss_pred CCCC
Q 018188 240 GHDG 243 (359)
Q Consensus 240 Gg~s 243 (359)
|++.
T Consensus 150 Gh~~ 153 (448)
T KOG1399|consen 150 GHYV 153 (448)
T ss_pred cCcC
Confidence 9883
No 198
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.83 E-value=8.2e-09 Score=103.27 Aligned_cols=129 Identities=19% Similarity=0.216 Sum_probs=77.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchh-HHH---HHHHcCCccee-cCCeE
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AQR---FLDELGVEYDE-QDNYV 165 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~-~~~---~l~~~G~~~~~-~~~~~ 165 (359)
+|||||||+|++|..+|.. .. |++|+|||+. ..||.|.+.|+++.+.++... ..+ ...++|+.... .-+|.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~-g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FA-DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HC-CCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHH
Confidence 4899999999999998754 46 9999999985 689999999999998776542 222 23345553211 00111
Q ss_pred EE-echHH-HHHHHH----HHHH--hCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEE
Q 018188 166 VI-KHAAL-FTSTIM----SKLL--ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVS 237 (359)
Q Consensus 166 ~~-~~~~~-~~~~L~----~~~~--~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIl 237 (359)
.. .+... ..+.+. .... ++.|++++.++.+.. +...| .+. +..++++|+||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V---~~~--------------~g~~~~~d~lIi 137 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTL---RTG--------------DGEEITGDQIVI 137 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEE---EEC--------------CCcEEEeCEEEE
Confidence 00 00001 111111 1111 236899888754322 33332 221 124689999999
Q ss_pred cCCCCC
Q 018188 238 SCGHDG 243 (359)
Q Consensus 238 AtGg~s 243 (359)
|||...
T Consensus 138 ATGs~p 143 (452)
T TIGR03452 138 AAGSRP 143 (452)
T ss_pred EECCCC
Confidence 999765
No 199
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=3.5e-08 Score=101.46 Aligned_cols=130 Identities=15% Similarity=0.224 Sum_probs=89.9
Q ss_pred HHHHHHhhcCCCCeEEEEeeccCCCCCccc-CCcce---------ee----------------------hhc--chhHHH
Q 018188 104 LSCAYEISKNPSIRVAIIEQSVSPGGGAWL-GGQLF---------SA----------------------MVV--RKPAQR 149 (359)
Q Consensus 104 l~aA~~La~~~G~~V~vlEk~~~~GG~~~~-~g~~~---------~~----------------------~~~--~~~~~~ 149 (359)
|.||+.+++. |.+|+||||....+|++.. +|++. +. .+. ....++
T Consensus 1 l~AAl~aa~~-G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~ 79 (570)
T PRK05675 1 MRAALQLAQG-GHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVF 79 (570)
T ss_pred ChhHHhHHhc-CCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 4789999999 9999999999876665432 22211 00 000 124679
Q ss_pred HHHHcCCcceecCC--e------------------EEEe-----chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe-CC
Q 018188 150 FLDELGVEYDEQDN--Y------------------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GG 203 (359)
Q Consensus 150 ~l~~~G~~~~~~~~--~------------------~~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~-~~ 203 (359)
||+++|++|+.... + .... ....++..|.+.+. +.|++++.++.+++|+.+ ++
T Consensus 80 ~L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~-~~gi~i~~~~~~~~Li~~~~g 158 (570)
T PRK05675 80 ELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNL-KNGTTFLNEWYAVDLVKNQDG 158 (570)
T ss_pred HHHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHh-ccCCEEEECcEEEEEEEcCCC
Confidence 99999999975321 1 0111 13456778877765 679999999999999985 68
Q ss_pred EEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 204 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 204 ~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+|.|+...+ . .++....|.|+.||+||||++.
T Consensus 159 ~v~Gv~~~~------~---~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 159 AVVGVIAIC------I---ETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred eEEEEEEEE------c---CCCcEEEEecCeEEECCCCccc
Confidence 999998631 1 1224567999999999999873
No 200
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.80 E-value=8.9e-08 Score=96.13 Aligned_cols=135 Identities=21% Similarity=0.383 Sum_probs=89.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCe-EEEEeeccCCCCCcccCCcceeehhcch------------hHHHHHHHcCCc-
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIR-VAIIEQSVSPGGGAWLGGQLFSAMVVRK------------PAQRFLDELGVE- 157 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~vlEk~~~~GG~~~~~g~~~~~~~~~~------------~~~~~l~~~G~~- 157 (359)
.||||||||.+|+.+||+|++. |.+ .+++|+.....|++|...++.......+ ...+..++.|.+
T Consensus 40 A~vvViggG~~g~~~~yhlak~-g~k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl~t 118 (856)
T KOG2844|consen 40 ADVVVIGGGSLGCSTAYHLAKR-GMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGLHT 118 (856)
T ss_pred ccEEEEcCCchhHHHHHHHHHc-cccceEEEeeeeeccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcCCCc
Confidence 7999999999999999999999 999 5566666666677776544332211000 011222333432
Q ss_pred -ceecCC--------------------------------------eEE----------------EechHHHHHHHHHHHH
Q 018188 158 -YDEQDN--------------------------------------YVV----------------IKHAALFTSTIMSKLL 182 (359)
Q Consensus 158 -~~~~~~--------------------------------------~~~----------------~~~~~~~~~~L~~~~~ 182 (359)
|-..+. |++ ..++..++..|...+
T Consensus 119 Gwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A- 197 (856)
T KOG2844|consen 119 GWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAA- 197 (856)
T ss_pred ceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHHHHH-
Confidence 111110 111 223455667766665
Q ss_pred hCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 183 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 183 ~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++.|+.|++++.|++|....+++.+|.+. -..|++.+||.|+|-++
T Consensus 198 ~~~GA~viE~cpV~~i~~~~~~~~gVeT~---------------~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 198 SALGALVIENCPVTGLHVETDKFGGVETP---------------HGSIETECVVNAAGVWA 243 (856)
T ss_pred HhcCcEEEecCCcceEEeecCCccceecc---------------CcceecceEEechhHHH
Confidence 48999999999999999887777788774 25699999999999544
No 201
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.80 E-value=1.3e-07 Score=93.47 Aligned_cols=34 Identities=35% Similarity=0.599 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
+|||+|||+|++|+++|+.|+++ |++|+|||++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~-g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEA-GKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCcEEEEECCC
Confidence 48999999999999999999999 99999999873
No 202
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.78 E-value=8.5e-08 Score=81.99 Aligned_cols=131 Identities=22% Similarity=0.341 Sum_probs=79.4
Q ss_pred EEECCChHHHHHHHHhhcC----CCCeEEEEeeccCCC-CCcccCCc----cee-------ehhc-c-hhHHHHHHHcCC
Q 018188 95 IVVGAGSAGLSCAYEISKN----PSIRVAIIEQSVSPG-GGAWLGGQ----LFS-------AMVV-R-KPAQRFLDELGV 156 (359)
Q Consensus 95 vIIGgG~aGl~aA~~La~~----~G~~V~vlEk~~~~G-G~~~~~g~----~~~-------~~~~-~-~~~~~~l~~~G~ 156 (359)
+|||+|++|++++.+|.++ +..+|+|+|+... | |..|.... +++ .... . ....+|+++.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 5999999999999999876 2678999999655 5 55554431 111 1111 1 457788888764
Q ss_pred ---cceecCCeEEEechHHHHHHHHHHHHh--CCCcEEE-cceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEE
Q 018188 157 ---EYDEQDNYVVIKHAALFTSTIMSKLLA--RPNVKLF-NAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM 230 (359)
Q Consensus 157 ---~~~~~~~~~~~~~~~~~~~~L~~~~~~--~~gv~i~-~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i 230 (359)
.......|.....-.+|++..++.+.+ ..++++. ...+|+++...++... +.+. ++..+
T Consensus 80 ~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~-v~~~--------------~g~~~ 144 (156)
T PF13454_consen 80 DEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYR-VVTA--------------DGQSI 144 (156)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEE-EEEC--------------CCCEE
Confidence 111112222212223445544555443 2354443 3458889888776543 3332 24778
Q ss_pred EcCEEEEcCCC
Q 018188 231 EAKIVVSSCGH 241 (359)
Q Consensus 231 ~A~~VIlAtGg 241 (359)
.+|.||+|+|+
T Consensus 145 ~~d~VvLa~Gh 155 (156)
T PF13454_consen 145 RADAVVLATGH 155 (156)
T ss_pred EeCEEEECCCC
Confidence 99999999995
No 203
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.78 E-value=2.2e-08 Score=91.42 Aligned_cols=141 Identities=22% Similarity=0.315 Sum_probs=92.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCC-----CCeEEEEeeccCCCCCcccCCcceeehhcc-------hhHHHHHHHcCCcce
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNP-----SIRVAIIEQSVSPGGGAWLGGQLFSAMVVR-------KPAQRFLDELGVEYD 159 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~-----G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~-------~~~~~~l~~~G~~~~ 159 (359)
..|+|||||+.|+++||.|+++| -..|+|+|+....||.+...++++..+... ....++.+++.-+|+
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdeyd 90 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEYD 90 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhhc
Confidence 58999999999999999999983 178999999998888776555544432221 111222222211111
Q ss_pred ecCC----------------------------e-----------------EEEechHHHHHHHHHHHHhCCCcEEEccee
Q 018188 160 EQDN----------------------------Y-----------------VVIKHAALFTSTIMSKLLARPNVKLFNAVA 194 (359)
Q Consensus 160 ~~~~----------------------------~-----------------~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~ 194 (359)
.... | ..+.|+..|.+.++.++.+..||+++++ +
T Consensus 91 GvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G-k 169 (380)
T KOG2852|consen 91 GVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG-K 169 (380)
T ss_pred CcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe-e
Confidence 1100 0 0156788899999999988888999999 7
Q ss_pred eeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 195 AEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 195 V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
|.++..+.+++.++.... + .+.......+.+|++.|-+.
T Consensus 170 v~ev~dEk~r~n~v~~ae-----~-----~~ti~~~d~~~ivvsaGPWT 208 (380)
T KOG2852|consen 170 VKEVSDEKHRINSVPKAE-----A-----EDTIIKADVHKIVVSAGPWT 208 (380)
T ss_pred eEEeecccccccccchhh-----h-----cCceEEeeeeEEEEecCCCc
Confidence 888864456666553320 0 01235678899999999665
No 204
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.77 E-value=1.1e-08 Score=100.35 Aligned_cols=45 Identities=22% Similarity=0.516 Sum_probs=40.0
Q ss_pred cccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc
Q 018188 87 VTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW 132 (359)
Q Consensus 87 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~ 132 (359)
....++||+|||||..|..||+-++-+ |+||.++|+++...|++.
T Consensus 63 ~~~~~fDVLIIGGGAtGaGcALDA~TR-GLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 63 KSTHEFDVLIIGGGATGAGCALDAATR-GLKTALVEAGDFASGTSS 107 (680)
T ss_pred hcCCcccEEEECCCccCcceeehhhcc-cceeEEEecccccCCccc
Confidence 445679999999999999999999999 999999999998777653
No 205
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.74 E-value=2.7e-08 Score=95.37 Aligned_cols=38 Identities=32% Similarity=0.644 Sum_probs=34.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCC
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGG 130 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~ 130 (359)
.+|||||||++|+++|+.|.+. |++|+|+|+...+.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRK-GIDVVVLESREDPRGE 40 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CCeEEEEeeccccccC
Confidence 5899999999999999999999 9999999998776543
No 206
>PRK02106 choline dehydrogenase; Validated
Probab=98.74 E-value=1.4e-07 Score=96.88 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=43.0
Q ss_pred HHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 178 MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 178 ~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+..+.+..|++|+.++.|.+|+.++++++||+.... + +....+.++.||+|+|+..+
T Consensus 207 l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~------~----~~~~~~~ak~VILaaGai~T 263 (560)
T PRK02106 207 LDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERG------G----GRETARARREVILSAGAINS 263 (560)
T ss_pred hccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeC------C----cEEEEEeeeeEEEccCCCCC
Confidence 344444678999999999999998888999887421 1 12345789999999998764
No 207
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.73 E-value=3.7e-07 Score=92.28 Aligned_cols=39 Identities=49% Similarity=0.779 Sum_probs=36.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
.||||||||++||+||..|+++ |++|+|+|++..+||.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCcc
Confidence 5899999999999999999999 99999999999998754
No 208
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.71 E-value=2.2e-08 Score=88.36 Aligned_cols=113 Identities=23% Similarity=0.323 Sum_probs=68.9
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechHH
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAAL 172 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~ 172 (359)
||||||||++|+.+|..|++. +.+|+|+|+....+ +...+++......... . ...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~~~~---~~~~~~~~~~~~~~~~-----~----------------~~~ 55 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSPGTP---YNSGCIPSPLLVEIAP-----H----------------RHE 55 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSSHHH---HHHSHHHHHHHHHHHH-----H----------------HHH
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEEecccccc---cccccccccccccccc-----c----------------ccc
Confidence 799999999999999999988 99999998865321 1111111110000000 0 000
Q ss_pred HH--H--HHHHHHHhCCCcEEEcceeeeeEEEeCCEEE----EEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCC
Q 018188 173 FT--S--TIMSKLLARPNVKLFNAVAAEDLIVKGGRVG----GVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD 242 (359)
Q Consensus 173 ~~--~--~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~----gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~ 242 (359)
+. + .+.+++. ..+++++.+.++.++....+.+. .+... ..++..++.+|+||+|||..
T Consensus 56 ~~~~~~~~~~~~~~-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 56 FLPARLFKLVDQLK-NRGVEIRLNAKVVSIDPESKRVVCPAVTIQVV-----------ETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHGHHHHHHH-HHTHEEEHHHTEEEEEESTTEEEETCEEEEEE-----------ETTTEEEEEEEEEEEESTEE
T ss_pred cccccccccccccc-cceEEEeeccccccccccccccccCcccceee-----------ccCCceEecCCeeeecCccc
Confidence 00 0 3333443 57899989999999987776541 11110 01135789999999999944
No 209
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.70 E-value=1.4e-07 Score=71.10 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=58.8
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechHHH
Q 018188 94 VIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAALF 173 (359)
Q Consensus 94 VvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~ 173 (359)
|+|||||+.|+.+|..|++. |.+|+|+++.+.+.. .+ ....
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~~~---------------------------~~-----------~~~~ 42 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRLLP---------------------------GF-----------DPDA 42 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSSST---------------------------TS-----------SHHH
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchhhh---------------------------hc-----------CHHH
Confidence 79999999999999999999 999999999987520 01 1122
Q ss_pred HHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEc
Q 018188 174 TSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN 211 (359)
Q Consensus 174 ~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~ 211 (359)
...+.+.+ ++.|+++++++.+.++..+++.+. |.+.
T Consensus 43 ~~~~~~~l-~~~gV~v~~~~~v~~i~~~~~~~~-V~~~ 78 (80)
T PF00070_consen 43 AKILEEYL-RKRGVEVHTNTKVKEIEKDGDGVE-VTLE 78 (80)
T ss_dssp HHHHHHHH-HHTTEEEEESEEEEEEEEETTSEE-EEEE
T ss_pred HHHHHHHH-HHCCCEEEeCCEEEEEEEeCCEEE-EEEe
Confidence 33434444 467999999999999998876665 6553
No 210
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.69 E-value=2.8e-07 Score=89.83 Aligned_cols=124 Identities=20% Similarity=0.354 Sum_probs=73.6
Q ss_pred cEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCC-cccCCcceeehhcchhHHHHHHHc-CCccee-------c-
Q 018188 93 DVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGG-AWLGGQLFSAMVVRKPAQRFLDEL-GVEYDE-------Q- 161 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~-~~~~g~~~~~~~~~~~~~~~l~~~-G~~~~~-------~- 161 (359)
||+|||||++|+++|+.|++. +|++|+|+|+.+..++. +|. ++.. -.......+++.+ +..|.. .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~---~~~~-~~~~~~~~~~~~~v~~~W~~~~v~~~~~~ 76 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWS---FFDS-DLSDAQHAWLADLVQTDWPGYEVRFPKYR 76 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccce---eccc-ccchhhhhhhhhhheEeCCCCEEECcchh
Confidence 899999999999999999873 58999999998876653 231 1111 0111111122221 111110 0
Q ss_pred ---CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEc
Q 018188 162 ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSS 238 (359)
Q Consensus 162 ---~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlA 238 (359)
..-+...+..++.+.+.+.+. .+ ++++++|+++ +.+.| .+. ++.+++|+.||.|
T Consensus 77 ~~l~~~Y~~I~r~~f~~~l~~~l~--~~--i~~~~~V~~v--~~~~v---~l~--------------dg~~~~A~~VI~A 133 (370)
T TIGR01789 77 RKLKTAYRSMTSTRFHEGLLQAFP--EG--VILGRKAVGL--DADGV---DLA--------------PGTRINARSVIDC 133 (370)
T ss_pred hhcCCCceEEEHHHHHHHHHHhhc--cc--EEecCEEEEE--eCCEE---EEC--------------CCCEEEeeEEEEC
Confidence 011123445666666654442 23 6668888877 34433 222 2478999999999
Q ss_pred CCCCC
Q 018188 239 CGHDG 243 (359)
Q Consensus 239 tGg~s 243 (359)
+|..+
T Consensus 134 ~G~~s 138 (370)
T TIGR01789 134 RGFKP 138 (370)
T ss_pred CCCCC
Confidence 99765
No 211
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.68 E-value=3.9e-08 Score=99.96 Aligned_cols=139 Identities=15% Similarity=0.205 Sum_probs=76.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCC-------cceeehhcchhHHHHHHHcCCcceecCCeE
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGG-------QLFSAMVVRKPAQRFLDELGVEYDEQDNYV 165 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g-------~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~ 165 (359)
.|+|||||++||++|..|.+. |++++++||.+.+||.-.... ..+.....+. ..+.+.--+.++. ++++
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~-sk~~~~fsdfp~p--~~~p 78 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNT-SKEMMAFSDFPFP--EDYP 78 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS--GGGSCCTTS-HC--CCCS
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCCccCeeCCcCCCCccccccceEEee-CchHhcCCCcCCC--CCCC
Confidence 699999999999999999999 999999999999987532111 1121111110 0000000112222 2233
Q ss_pred EEechHHHHHHHHHHHHhCCCc--EEEcceeeeeEEEeCC-EEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCC
Q 018188 166 VIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD 242 (359)
Q Consensus 166 ~~~~~~~~~~~L~~~~~~~~gv--~i~~~~~V~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~ 242 (359)
.+.+..++.+.|...+ ++.++ .|.++++|+++.+.++ ... ..|.+... . ++...+-..|.||+|||++
T Consensus 79 ~f~~~~~v~~Yl~~Ya-~~f~L~~~I~fnt~V~~v~~~~d~~~~---~~W~V~~~-~----~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYA-EHFGLRKHIRFNTEVVSVERDPDFSAT---GKWEVTTE-N----DGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp SSEBHHHHHHHHHHHH-HHTTGGGGEETSEEEEEEEEETTTT-E---TEEEEEET-T----TTEEEEEEECEEEEEE-SS
T ss_pred CCCCHHHHHHHHHHHH-hhhCCcceEEEccEEeEeeeccccCCC---ceEEEEee-c----CCeEEEEEeCeEEEcCCCc
Confidence 3445566666654444 35554 5899999999987642 111 01222111 1 1123455689999999988
Q ss_pred CC
Q 018188 243 GP 244 (359)
Q Consensus 243 s~ 244 (359)
+.
T Consensus 150 ~~ 151 (531)
T PF00743_consen 150 SK 151 (531)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 212
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.68 E-value=1.8e-07 Score=86.62 Aligned_cols=141 Identities=22% Similarity=0.264 Sum_probs=90.8
Q ss_pred cCcccEEEECCChHHHHHHHHhhc-CCCCeEEEEeeccCCCCCc------cc-CC------cceeehhcch--hHHHHHH
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISK-NPSIRVAIIEQSVSPGGGA------WL-GG------QLFSAMVVRK--PAQRFLD 152 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~-~~G~~V~vlEk~~~~GG~~------~~-~g------~~~~~~~~~~--~~~~~l~ 152 (359)
..+||.||||||+.|++.|.+|.- +|+.+|.|+|+....+-.. .. .| .+-..+.++. ...++++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~ 125 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD 125 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence 346999999999999999999874 5799999999987654211 11 11 1112233433 3457788
Q ss_pred HcCCcceecCCeEE----------------------------------------------------EechHHHHHHHHHH
Q 018188 153 ELGVEYDEQDNYVV----------------------------------------------------IKHAALFTSTIMSK 180 (359)
Q Consensus 153 ~~G~~~~~~~~~~~----------------------------------------------------~~~~~~~~~~L~~~ 180 (359)
+.+++|...+...+ +.+-..++..+.+.
T Consensus 126 e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~ed 205 (453)
T KOG2665|consen 126 EKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGED 205 (453)
T ss_pred hcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHH
Confidence 88887764432221 11223455566666
Q ss_pred HHhCCCcEEEcceeeeeEEEeCCE---EEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 181 LLARPNVKLFNAVAAEDLIVKGGR---VGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 181 ~~~~~gv~i~~~~~V~~l~~~~~~---v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+. ..|.+++++.++..+.+.+.. .-.++. ++...++++++||-|+|-.+
T Consensus 206 F~-~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~-------------ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 206 FD-FMGGRIYTNFRLQGIAQNKEATFSYPIVVL-------------NGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred HH-HhcccccccceeccchhccCCCCCCceEEe-------------cCccceeEEeEEEEeccccH
Confidence 53 778999999999988765431 111222 12357899999999999544
No 213
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.68 E-value=2.5e-07 Score=89.95 Aligned_cols=42 Identities=48% Similarity=0.712 Sum_probs=39.2
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW 132 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~ 132 (359)
...||||||+|.+||.+|+.|.+. |++|+|+|.++..||.++
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcCceeE
Confidence 458999999999999999999999 999999999999998774
No 214
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.67 E-value=6.1e-07 Score=89.27 Aligned_cols=41 Identities=27% Similarity=0.265 Sum_probs=38.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW 132 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~ 132 (359)
+|||||||+|.+|+.+|..|++. |.+|+++|++...||..+
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGGESA 44 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCcccc
Confidence 59999999999999999999999 999999999999987653
No 215
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.67 E-value=3.5e-07 Score=85.52 Aligned_cols=37 Identities=24% Similarity=0.567 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHhhc---CCCCeEEEEeeccC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISK---NPSIRVAIIEQSVS 126 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~---~~G~~V~vlEk~~~ 126 (359)
.+.||+|||||..|++.|++|.+ ..|++|+|+|++..
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 35899999999999999999976 23799999999863
No 216
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.67 E-value=3.8e-07 Score=89.11 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCE-EEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
..+.+.|++.+.++.|++++++++|++|.+.++. +. |.+.+ . ..++..+++|+.|++.+||.+
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~-v~~~~------~---~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWE-VKVKD------L---KTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEE-EEEEe------c---CCCCeEEEECCEEEECCchHh
Confidence 5677888888887779999999999999987543 33 33321 1 123467899999999999654
No 217
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.66 E-value=3.8e-07 Score=93.15 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=43.3
Q ss_pred HHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 176 TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 176 ~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
.++..+.++.|++|+.++.|.+|..++++++||..... + .....+.+|.||+|+|+..+
T Consensus 198 ~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~------~----~~~~~~~ak~VIlaAGai~S 256 (532)
T TIGR01810 198 AYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKG------G----RKEHTEANKEVILSAGAINS 256 (532)
T ss_pred HHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeC------C----cEEEEEEeeeEEEccCCCCC
Confidence 33444545678999999999999998888999987421 0 01234689999999998653
No 218
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.1e-07 Score=86.80 Aligned_cols=72 Identities=29% Similarity=0.386 Sum_probs=52.8
Q ss_pred ccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeec-cC-------CCCCcccCCcceeehhcch----hHHHHHHHcC
Q 018188 88 TYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQS-VS-------PGGGAWLGGQLFSAMVVRK----PAQRFLDELG 155 (359)
Q Consensus 88 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~-~~-------~GG~~~~~g~~~~~~~~~~----~~~~~l~~~G 155 (359)
...+||.+|||||.+||+||.+++.. |.+|.++|-= +. +||+|.+.|+++.+++.+. ...+.-.++|
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 34579999999999999999999999 9999999952 22 3566666677766665553 3445555677
Q ss_pred Cccee
Q 018188 156 VEYDE 160 (359)
Q Consensus 156 ~~~~~ 160 (359)
...+.
T Consensus 95 W~~~e 99 (503)
T KOG4716|consen 95 WNVDE 99 (503)
T ss_pred CCCcc
Confidence 66554
No 219
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.63 E-value=6.4e-07 Score=83.73 Aligned_cols=36 Identities=47% Similarity=0.729 Sum_probs=33.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSP 127 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~ 127 (359)
..||+|||+|.-|+++|++|+++ |.++++||+-+.+
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~-g~killLeqf~~p 42 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKR-GDKILLLEQFPLP 42 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhc-CCeEEEEeccCCC
Confidence 48999999999999999999999 9999999998765
No 220
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.62 E-value=1.1e-07 Score=102.47 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=67.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
..+|+|||||||||+||+.|++. |.+|+|+|+...+||-.. +|++- | ...
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~GG~l~---------------------yGIP~-----~---rlp 355 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLGGVLR---------------------YGIPE-----F---RLP 355 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCCceEE---------------------ccCCC-----C---cCh
Confidence 57999999999999999999999 999999999988877321 33321 1 112
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD 242 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~ 242 (359)
.++++...+.+. +.|+++++++.+-. . +... +.....+|.||+|||..
T Consensus 356 ~~vi~~~i~~l~-~~Gv~f~~n~~vG~------d---it~~--------------~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 356 NQLIDDVVEKIK-LLGGRFVKNFVVGK------T---ATLE--------------DLKAAGFWKIFVGTGAG 403 (944)
T ss_pred HHHHHHHHHHHH-hhcCeEEEeEEecc------E---EeHH--------------HhccccCCEEEEeCCCC
Confidence 334454455554 67999998865421 1 1111 01234689999999985
No 221
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.62 E-value=3.8e-07 Score=93.76 Aligned_cols=123 Identities=18% Similarity=0.263 Sum_probs=83.3
Q ss_pred hhcCCCCeEEEEeeccCCCCCccc-CCccee--------------------------eh----hc--chhHHHHHHHcCC
Q 018188 110 ISKNPSIRVAIIEQSVSPGGGAWL-GGQLFS--------------------------AM----VV--RKPAQRFLDELGV 156 (359)
Q Consensus 110 La~~~G~~V~vlEk~~~~GG~~~~-~g~~~~--------------------------~~----~~--~~~~~~~l~~~G~ 156 (359)
|++. |++|+||||....+|++.. .|++.. .- ++ ....++||+++|+
T Consensus 1 ~a~~-G~~VilveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~~~i~~L~~~Gv 79 (565)
T TIGR01816 1 LAKG-GVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCKQAPEAVLELEHMGM 79 (565)
T ss_pred CCCC-CCceEEEEcCCCCCccHHHhcchheeccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4566 9999999999877665532 222110 00 00 1246699999999
Q ss_pred cceecCC--e------------------EEEe-----chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEc
Q 018188 157 EYDEQDN--Y------------------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN 211 (359)
Q Consensus 157 ~~~~~~~--~------------------~~~~-----~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~ 211 (359)
+|+.... + .... ....++..|.+.+. +.|+++++++.+++|+.++++|.|+...
T Consensus 80 ~f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~-~~gi~i~~~~~~~~Li~~~g~v~Ga~~~ 158 (565)
T TIGR01816 80 PFSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNL-KADTSFFNEYFALDLLMEDGECRGVIAY 158 (565)
T ss_pred ccccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHH-hCCCEEEeccEEEEEEeeCCEEEEEEEE
Confidence 9965321 1 1111 12456778777765 6899999999999999888999998763
Q ss_pred eeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 212 WALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 212 ~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+ .. ++....|.|+.||+||||++
T Consensus 159 ~------~~---~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 159 C------LE---TGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred E------cC---CCcEEEEEeCeEEECCCCcc
Confidence 1 11 12346799999999999987
No 222
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.2e-07 Score=91.97 Aligned_cols=136 Identities=26% Similarity=0.385 Sum_probs=85.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc-CCCCCcc-------cCCcceeeh-hcchhHHHHHHHcCCcceec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV-SPGGGAW-------LGGQLFSAM-VVRKPAQRFLDELGVEYDEQ 161 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~-~~GG~~~-------~~g~~~~~~-~~~~~~~~~l~~~G~~~~~~ 161 (359)
.|||||||||-||+.||..+++. |.+.+++-.+- .+|--+. .-|.++... .+....-+.+++.|+.|...
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L 106 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL 106 (679)
T ss_pred cccEEEECCCccchHHHHHHHhc-CCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHh
Confidence 59999999999999999999999 99999998754 2221111 112233221 12223345566666666532
Q ss_pred C---CeEE-----EechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCC-----EEEEEEEceeeeeccCCCCCCCCCe
Q 018188 162 D---NYVV-----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-----RVGGVVTNWALVSMNHDTQSCMDPN 228 (359)
Q Consensus 162 ~---~~~~-----~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~-----~v~gv~~~~~~~~~~~~~~~~g~~~ 228 (359)
. +-.+ ..+...|...+.+.+....+.+|+.+ .|.+++..+. .|.||... ++.
T Consensus 107 Nrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~--------------dgt 171 (679)
T KOG2311|consen 107 NRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLV--------------DGT 171 (679)
T ss_pred hccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEe--------------cCc
Confidence 1 1111 22333444454444545678888887 7888876542 36777775 347
Q ss_pred EEEcCEEEEcCCCC
Q 018188 229 VMEAKIVVSSCGHD 242 (359)
Q Consensus 229 ~i~A~~VIlAtGg~ 242 (359)
.+.|+.||+.||.+
T Consensus 172 ~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 172 VVYAESVILTTGTF 185 (679)
T ss_pred EeccceEEEeeccc
Confidence 89999999999955
No 223
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.60 E-value=2.1e-07 Score=99.71 Aligned_cols=39 Identities=36% Similarity=0.620 Sum_probs=36.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGG 130 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~ 130 (359)
..+|+|||||++|+++|+.|++. |.+|+|+|+.+.+||.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~GG~ 577 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENAGGV 577 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCeEEEEecccccCcc
Confidence 46899999999999999999999 9999999999888763
No 224
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.59 E-value=1.2e-07 Score=69.40 Aligned_cols=36 Identities=39% Similarity=0.683 Sum_probs=32.6
Q ss_pred EECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc
Q 018188 96 VVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW 132 (359)
Q Consensus 96 IIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~ 132 (359)
|||||++||++|+.|++. |.+|+|+|+.+.+||.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccCccee
Confidence 899999999999999999 999999999999987653
No 225
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.56 E-value=1.2e-06 Score=85.94 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCC-C
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD-G 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~-s 243 (359)
.+.+.|.+.+. +.|++++.+++|.++..+++++.+|.+.. +....++||.||+|+|++ +
T Consensus 264 RL~~aL~~~~~-~~Gg~il~g~~V~~i~~~~~~v~~V~t~~------------g~~~~l~AD~vVLAaGaw~S 323 (419)
T TIGR03378 264 RLEEALKHRFE-QLGGVMLPGDRVLRAEFEGNRVTRIHTRN------------HRDIPLRADHFVLASGSFFS 323 (419)
T ss_pred HHHHHHHHHHH-HCCCEEEECcEEEEEEeeCCeEEEEEecC------------CccceEECCEEEEccCCCcC
Confidence 45566666664 78999999999999998888888876531 012579999999999987 5
No 226
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.56 E-value=2.6e-07 Score=98.24 Aligned_cols=124 Identities=16% Similarity=0.208 Sum_probs=73.2
Q ss_pred cEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCC---CCCcccCCcceeehhcchh-HHHHHHHcCCcc-----eec-
Q 018188 93 DVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSP---GGGAWLGGQLFSAMVVRKP-AQRFLDELGVEY-----DEQ- 161 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~---GG~~~~~g~~~~~~~~~~~-~~~~l~~~G~~~-----~~~- 161 (359)
+|+|||||++|+++|+.|++. +|++|+|+||.... |.+.......+..+..... ..+.+......+ ...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 699999999999999999985 47999999998753 2221111111111110110 111111110111 000
Q ss_pred -----CCe-EEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEE
Q 018188 162 -----DNY-VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIV 235 (359)
Q Consensus 162 -----~~~-~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~V 235 (359)
... ....+...+.+.|.+++. +.|++++++++|+++.. ..+++|.|
T Consensus 82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~-~~GV~i~~g~~v~~i~~---------------------------~~~~~D~V 133 (765)
T PRK08255 82 RRIRSGGHGFAGIGRKRLLNILQARCE-ELGVKLVFETEVPDDQA---------------------------LAADADLV 133 (765)
T ss_pred EEEEECCeeEecCCHHHHHHHHHHHHH-HcCCEEEeCCccCchhh---------------------------hhcCCCEE
Confidence 111 123456778888888875 67999999987765420 12578999
Q ss_pred EEcCCCCCC
Q 018188 236 VSSCGHDGP 244 (359)
Q Consensus 236 IlAtGg~s~ 244 (359)
|.|+|..+.
T Consensus 134 VgADG~~S~ 142 (765)
T PRK08255 134 IASDGLNSR 142 (765)
T ss_pred EEcCCCCHH
Confidence 999997663
No 227
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.53 E-value=2.5e-07 Score=99.54 Aligned_cols=39 Identities=38% Similarity=0.664 Sum_probs=36.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGG 130 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~ 130 (359)
.++|+||||||||++||+.|++. |.+|+|+|+...+||.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~lGG~ 575 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKPGGV 575 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccccCce
Confidence 47999999999999999999999 9999999999888764
No 228
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.51 E-value=6.9e-07 Score=81.28 Aligned_cols=130 Identities=19% Similarity=0.227 Sum_probs=78.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc---cCCcceee--hhc--c-hhHHHHH---HHcCCc--c
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW---LGGQLFSA--MVV--R-KPAQRFL---DELGVE--Y 158 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~---~~g~~~~~--~~~--~-~~~~~~l---~~~G~~--~ 158 (359)
.+|+|||+|++|++||+.|++. |..|+|+||+.-.||..- ..++.++. ..+ + +.+.+++ .+-|+- +
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREA-GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 3799999999999999999999 999999999988876532 11222221 111 1 2233333 333431 1
Q ss_pred -----eec--------CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCC
Q 018188 159 -----DEQ--------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM 225 (359)
Q Consensus 159 -----~~~--------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g 225 (359)
... +.-++...+ -+..|.+.+ ..+.++.++++|+++...++..+ +.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~d~~pyvg~p--gmsalak~L--AtdL~V~~~~rVt~v~~~~~~W~-l~~~~------------- 142 (331)
T COG3380 81 TPAVWTFTGDGSPPRGDEDPYVGEP--GMSALAKFL--ATDLTVVLETRVTEVARTDNDWT-LHTDD------------- 142 (331)
T ss_pred cccccccccCCCCCCCCCCccccCc--chHHHHHHH--hccchhhhhhhhhhheecCCeeE-EEecC-------------
Confidence 000 011111111 145555544 35788899999999988766443 33321
Q ss_pred CCeEEEcCEEEEcCC
Q 018188 226 DPNVMEAKIVVSSCG 240 (359)
Q Consensus 226 ~~~~i~A~~VIlAtG 240 (359)
......+|.||+|-=
T Consensus 143 g~~~~~~d~vvla~P 157 (331)
T COG3380 143 GTRHTQFDDVVLAIP 157 (331)
T ss_pred CCcccccceEEEecC
Confidence 135678899999854
No 229
>PRK12831 putative oxidoreductase; Provisional
Probab=98.50 E-value=1.8e-07 Score=93.93 Aligned_cols=41 Identities=39% Similarity=0.653 Sum_probs=37.0
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
...||+|||||++|+++|+.|++. |.+|+|+|+...+||..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~GG~l 179 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEPGGVL 179 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCCCee
Confidence 357999999999999999999999 99999999988887643
No 230
>PLN02612 phytoene desaturase
Probab=98.50 E-value=3e-06 Score=87.20 Aligned_cols=41 Identities=29% Similarity=0.414 Sum_probs=37.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
...+|+|||+|++|+++|+.|++. |.+|+|+|+...+||..
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLGGKV 132 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCCCcc
Confidence 357999999999999999999999 99999999998887743
No 231
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.49 E-value=1.6e-06 Score=84.63 Aligned_cols=204 Identities=19% Similarity=0.322 Sum_probs=117.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCC-CCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNP-SIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~-G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
..|||||||.+|+.+|..|.+++ +.+|++||++... .+..++ -+.-. .. .+.
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h---------l~~plL---------~eva~--g~-------l~~ 56 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH---------LFTPLL---------YEVAT--GT-------LSE 56 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc---------ccchhh---------hhhhc--CC-------CCh
Confidence 57999999999999999999972 4889999999752 111111 11000 00 001
Q ss_pred HHHHHHHHHHHHh-CCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC-CCch
Q 018188 171 ALFTSTIMSKLLA-RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP-FGAT 248 (359)
Q Consensus 171 ~~~~~~L~~~~~~-~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~-~~~~ 248 (359)
.+.... ++.+.+ ..+++++.+ +|++|..++.+|. +. +...+..|++|+|.|+... ++.+
T Consensus 57 ~~i~~p-~~~~~~~~~~v~~~~~-~V~~ID~~~k~V~---~~--------------~~~~i~YD~LVvalGs~~~~fgi~ 117 (405)
T COG1252 57 SEIAIP-LRALLRKSGNVQFVQG-EVTDIDRDAKKVT---LA--------------DLGEISYDYLVVALGSETNYFGIP 117 (405)
T ss_pred hheecc-HHHHhcccCceEEEEE-EEEEEcccCCEEE---eC--------------CCccccccEEEEecCCcCCcCCCC
Confidence 111112 222333 335888887 8999988877654 32 1367999999999997642 2222
Q ss_pred HHHH--------------HHhc-------CC--------cccc--cccccccccchhhHH-hhhccccCCCeeEeceEEE
Q 018188 249 GVKR--------------LKSI-------GM--------IDSV--PGMKALDMNTAEDAI-VRLTREIVPGMIVTGMEVA 296 (359)
Q Consensus 249 g~~~--------------~~~~-------g~--------~~~~--p~~~~~~~~~~~~~~-~~~~~~~~~g~~~~g~~v~ 296 (359)
|... ...+ .. .-.+ .|..++++....... ..+..+ .........+.
T Consensus 118 G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~--~~~~~~~~~V~ 195 (405)
T COG1252 118 GAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKK--FRVDPSELRVI 195 (405)
T ss_pred CHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhh--hcCCccccEEE
Confidence 2111 0000 00 0000 111222222111111 111111 01111156788
Q ss_pred eecCCCCCCCccceEEEehHHHHHHHHHHhCCCccccCCcccccccCchhhhh
Q 018188 297 EIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLA 349 (359)
Q Consensus 297 ~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (359)
+++.++++.|.|+.-+ ...++..|++++.+..++..|+++ .|+-|..
T Consensus 196 LVea~p~ILp~~~~~l---~~~a~~~L~~~GV~v~l~~~Vt~v---~~~~v~~ 242 (405)
T COG1252 196 LVEAGPRILPMFPPKL---SKYAERALEKLGVEVLLGTPVTEV---TPDGVTL 242 (405)
T ss_pred EEccCchhccCCCHHH---HHHHHHHHHHCCCEEEcCCceEEE---CCCcEEE
Confidence 9999999999998877 778999999999999999988654 5555543
No 232
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.48 E-value=6.4e-07 Score=89.30 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=68.2
Q ss_pred cEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 93 DVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
+|||||||++|+.+|..|++. ++.+|+|+|+.+..+ +.. .++++-..... ....
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~---~~~-------------------~~lp~~~~~~~---~~~~ 57 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS---FAN-------------------CALPYYIGEVV---EDRK 57 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc---ccc-------------------CCcchhhcCcc---CCHH
Confidence 699999999999999999874 368999999987542 110 00000000000 0000
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.......+.+.++.|++++.+++|++|..++..|. +... + .+...++.+|++|+|||+..
T Consensus 58 ~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~-~~~~--------~---~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 58 YALAYTPEKFYDRKQITVKTYHEVIAINDERQTVT-VLNR--------K---TNEQFEESYDKLILSPGASA 117 (438)
T ss_pred HcccCCHHHHHHhCCCEEEeCCEEEEEECCCCEEE-EEEC--------C---CCcEEeeecCEEEECCCCCC
Confidence 00110112333457999999999999977665443 2111 0 01224578999999999765
No 233
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.47 E-value=2.2e-07 Score=90.38 Aligned_cols=83 Identities=24% Similarity=0.474 Sum_probs=61.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEec
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKH 169 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 169 (359)
..-+++|||||++|+.||+.|++. |++|.|+||.+.+||. +.+++-.|...+...
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiGGr--------------------mak~~k~FP~~dcs~---- 177 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIGGR--------------------MAKLNKTFPTNDCSI---- 177 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCccccc--------------------HHhhhccCCCcccch----
Confidence 346899999999999999999999 9999999999999984 223333333322111
Q ss_pred hHHHHHHHHHHHHhCCCcEEEcceeeeeEE
Q 018188 170 AALFTSTIMSKLLARPNVKLFNAVAAEDLI 199 (359)
Q Consensus 170 ~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~ 199 (359)
-....++.....++++++++.++|+++.
T Consensus 178 --C~LaP~m~~v~~hp~i~l~TyaeV~ev~ 205 (622)
T COG1148 178 --CILAPKMVEVSNHPNIELITYAEVEEVS 205 (622)
T ss_pred --hhccchhhhhccCCceeeeeeeeeeeec
Confidence 1123345556678999999999999864
No 234
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.47 E-value=6.9e-07 Score=89.06 Aligned_cols=111 Identities=11% Similarity=0.177 Sum_probs=66.7
Q ss_pred cEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 93 DVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
+|||||||++|+.+|..|++. ++.+|+|||+.+..+- .. .++++.....+ ....
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~---~~-------------------~~~~~~~~~~~---~~~~ 56 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSF---GA-------------------CGLPYFVGGFF---DDPN 56 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCccee---ec-------------------CCCceEecccc---CCHH
Confidence 599999999999999999885 2468999999876421 00 00110000000 0111
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEE--cCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVME--AKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~--A~~VIlAtGg~s 243 (359)
++.....+.+ ++.|++++.+++|+.+..++..+. +... + ...++. +|++|+|||...
T Consensus 57 ~~~~~~~~~~-~~~gv~~~~~~~V~~id~~~~~v~-~~~~--------~-----~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 57 TMIARTPEEF-IKSGIDVKTEHEVVKVDAKNKTIT-VKNL--------K-----TGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred HhhcCCHHHH-HHCCCeEEecCEEEEEECCCCEEE-EEEC--------C-----CCCEEEecCCEEEECCCCCC
Confidence 1122222333 356999999999999977665443 2110 0 123444 999999999764
No 235
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.44 E-value=1.8e-06 Score=85.26 Aligned_cols=38 Identities=34% Similarity=0.627 Sum_probs=35.0
Q ss_pred cEEEECCChHHHHHHHHhhcCCC--CeEEEEeeccCCCCCc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPS--IRVAIIEQSVSPGGGA 131 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G--~~V~vlEk~~~~GG~~ 131 (359)
.|+|||||++||++|++|.+. + ..|+|+|+++..||..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~GG~l 41 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVGGLL 41 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCCceE
Confidence 489999999999999999998 7 9999999999998753
No 236
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.43 E-value=5.7e-06 Score=80.81 Aligned_cols=136 Identities=15% Similarity=0.220 Sum_probs=87.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
.+|+|||+|+.|+.+|..|++. |.+|+++++.+.+... .+ ..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~-g~~Vtlv~~~~~~l~~--------------------------~~-----------~~ 183 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA-GKAVTLVDNAASLLAS--------------------------LM-----------PP 183 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCcccch--------------------------hC-----------CH
Confidence 4799999999999999999999 9999999987654110 00 01
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCCCchHHH
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK 251 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~~~~g~~ 251 (359)
.....+.+.+ ++.|+++++++++.++..+++.+ .+... +..++.+|.||+|+|.... ..
T Consensus 184 ~~~~~l~~~l-~~~gV~i~~~~~v~~i~~~~~~~-~v~~~--------------~g~~i~~D~vI~a~G~~p~-----~~ 242 (377)
T PRK04965 184 EVSSRLQHRL-TEMGVHLLLKSQLQGLEKTDSGI-RATLD--------------SGRSIEVDAVIAAAGLRPN-----TA 242 (377)
T ss_pred HHHHHHHHHH-HhCCCEEEECCeEEEEEccCCEE-EEEEc--------------CCcEEECCEEEECcCCCcc-----hH
Confidence 1123333344 47899999999999987655443 23332 2367999999999996542 22
Q ss_pred HHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEe
Q 018188 252 RLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAE 297 (359)
Q Consensus 252 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~ 297 (359)
.+...|+... .++.++ +.. +.-.|++|..|..+..
T Consensus 243 l~~~~gl~~~----~gi~vd--~~l-----~ts~~~VyA~GD~a~~ 277 (377)
T PRK04965 243 LARRAGLAVN----RGIVVD--SYL-----QTSAPDIYALGDCAEI 277 (377)
T ss_pred HHHHCCCCcC----CCEEEC--CCc-----ccCCCCEEEeeecEeE
Confidence 3444454211 122222 111 1124999999976654
No 237
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.42 E-value=2.4e-06 Score=84.13 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=32.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCC
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPG 128 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~G 128 (359)
.||+|||||.+|+.+|+.|++. |++|+|+|+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-CCcEEEEecccccc
Confidence 3799999999999999999999 99999999877643
No 238
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.42 E-value=5.2e-07 Score=90.44 Aligned_cols=38 Identities=37% Similarity=0.624 Sum_probs=35.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG 129 (359)
..+|+|||||++|+.+|+.|++. |.+|+|+|+.+.+||
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~gG 177 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKAGG 177 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCCc
Confidence 47999999999999999999999 999999999988765
No 239
>PLN02785 Protein HOTHEAD
Probab=98.42 E-value=1.2e-06 Score=90.17 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=30.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.||+||||+|.+|+.+|.+|++ +.+|+|||++.
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~ 87 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGG 87 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCC
Confidence 4999999999999999999998 48999999986
No 240
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.42 E-value=4.1e-07 Score=99.01 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=54.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
..+|+||||||+||++|+.|++. |.+|+|+|+...+||... +|++.. ...
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~GG~l~---------------------~gip~~--------rl~ 479 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVVGGVLQ---------------------YGIPSF--------RLP 479 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCcceee---------------------ccCCcc--------CCC
Confidence 47999999999999999999999 999999999988876321 222221 112
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceee
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAA 195 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V 195 (359)
.++.....+.+. +.|+++++++.+
T Consensus 480 ~e~~~~~~~~l~-~~Gv~~~~~~~v 503 (1006)
T PRK12775 480 RDIIDREVQRLV-DIGVKIETNKVI 503 (1006)
T ss_pred HHHHHHHHHHHH-HCCCEEEeCCcc
Confidence 344555566665 679999988643
No 241
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=8.9e-07 Score=83.02 Aligned_cols=112 Identities=23% Similarity=0.370 Sum_probs=74.0
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEec
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKH 169 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 169 (359)
..|||+||||||+|.++|+++++. |++.-|+-. ..|| +..+.+-+. .-++++. ..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARK-GiRTGl~ae--rfGG------QvldT~~IE-------NfIsv~~---------te 264 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARK-GIRTGLVAE--RFGG------QVLDTMGIE-------NFISVPE---------TE 264 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhh-cchhhhhhh--hhCC------eeccccchh-------heecccc---------cc
Confidence 459999999999999999999999 999876632 2343 222211100 0011111 12
Q ss_pred hHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe--CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCC
Q 018188 170 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGH 241 (359)
Q Consensus 170 ~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg 241 (359)
...+...|.+.. +++.++++...++.+++.. .+...-|... ++-.+.++.||++||+
T Consensus 265 Gpkl~~ale~Hv-~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~--------------nGavLkaktvIlstGA 323 (520)
T COG3634 265 GPKLAAALEAHV-KQYDVDVMNLQRASKLEPAAVEGGLIEVELA--------------NGAVLKARTVILATGA 323 (520)
T ss_pred chHHHHHHHHHH-hhcCchhhhhhhhhcceecCCCCccEEEEec--------------CCceeccceEEEecCc
Confidence 345566766665 4789999999899998763 2444445554 2467999999999994
No 242
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.40 E-value=5.2e-07 Score=95.87 Aligned_cols=40 Identities=35% Similarity=0.513 Sum_probs=36.2
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGG 130 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~ 130 (359)
...+|+|||||++|+++|+.|++. |.+|+|+|+...+||.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~GG~ 469 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEIGGV 469 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCe
Confidence 357999999999999999999999 9999999998777763
No 243
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.40 E-value=7.8e-07 Score=87.51 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=65.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC--eEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEec
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSI--RVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKH 169 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 169 (359)
.+|||||||++|+.||..|++. |. +|+|+++..... |....+. ..++. +..... . ...
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~-~~~~~I~li~~e~~~~---------y~r~~l~---~~~~~--~~~~~~---~--~~~ 63 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQ-GFTGELHLFSDERHLP---------YERPPLS---KSMLL--EDSPQL---Q--QVL 63 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhh-CCCCCEEEeCCCCCCC---------CCCCCCC---HHHHC--CCCccc---c--ccC
Confidence 5899999999999999999987 54 799999876431 1000000 01110 000000 0 000
Q ss_pred hHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 170 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 170 ~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
. .+.+ .+.|++++.++.|..+..++..+ .+. +..++.+|+||+|||...
T Consensus 64 ~-------~~~~-~~~~i~~~~g~~V~~id~~~~~v---~~~--------------~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 64 P-------ANWW-QENNVHLHSGVTIKTLGRDTREL---VLT--------------NGESWHWDQLFIATGAAA 112 (396)
T ss_pred C-------HHHH-HHCCCEEEcCCEEEEEECCCCEE---EEC--------------CCCEEEcCEEEEccCCCC
Confidence 1 1112 35799999999898886655432 222 135799999999999764
No 244
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.39 E-value=7.6e-07 Score=85.79 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=72.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehh----------------cchhHHHHHHHcC
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMV----------------VRKPAQRFLDELG 155 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~----------------~~~~~~~~l~~~G 155 (359)
+|+|+||.||++|+.|..|.+.+..+++.+||.+.. .|..|.++.... ..-...++|.+.|
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f---~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF---SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC---CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 899999999999999999988735999999998754 355444332110 0113456666655
Q ss_pred CcceecCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCC---EEEEEEEceeeeeccCCCCCCCCCeEEEc
Q 018188 156 VEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG---RVGGVVTNWALVSMNHDTQSCMDPNVMEA 232 (359)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~---~v~gv~~~~~~~~~~~~~~~~g~~~~i~A 232 (359)
--+.....-.......+|.+. ++++.++..-.+.++++|++|...++ ....|.+. + .+|+..++.|
T Consensus 80 rl~~f~~~~~~~p~R~ef~dY-l~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~------~----~~g~~~~~~a 148 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDY-LRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTR------D----SDGDGETYRA 148 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHH-HHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEE------E----TTS-EEEEEE
T ss_pred ChhhhhhcCCCCCCHHHHHHH-HHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEe------e----cCCCeeEEEe
Confidence 322211000001122334333 46666666666889999999987642 23334432 1 1234578999
Q ss_pred CEEEEcCCC
Q 018188 233 KIVVSSCGH 241 (359)
Q Consensus 233 ~~VIlAtGg 241 (359)
+.||+|+|.
T Consensus 149 r~vVla~G~ 157 (341)
T PF13434_consen 149 RNVVLATGG 157 (341)
T ss_dssp SEEEE----
T ss_pred CeEEECcCC
Confidence 999999993
No 245
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.39 E-value=5e-07 Score=90.40 Aligned_cols=40 Identities=43% Similarity=0.718 Sum_probs=36.4
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGG 130 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~ 130 (359)
..++|+|||+|++|+.+|+.|++. |.+|+|+|+...+||.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~GG~ 171 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKPGGV 171 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCcE
Confidence 357999999999999999999999 9999999999888763
No 246
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.38 E-value=2e-06 Score=84.06 Aligned_cols=108 Identities=17% Similarity=0.250 Sum_probs=67.1
Q ss_pred ccEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 92 TDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
.+|||||||+||+.+|..|.+. +..+|+||++.+..- |....+. ..+. .+. ..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~---------y~~~~l~----~~~~-~~~------------~~ 56 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE---------YNKPDLS----HVFS-QGQ------------RA 56 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC---------cCcCcCc----HHHh-CCC------------CH
Confidence 4899999999999999999873 367899999876420 1000000 0000 000 11
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.++.....+.+.++.|++++.+++|+++..++..+. +. ...+.+|+||+|||...
T Consensus 57 ~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~---~~---------------~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 57 DDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVK---SQ---------------GNQWQYDKLVLATGASA 111 (377)
T ss_pred HHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCEEE---EC---------------CeEEeCCEEEECCCCCC
Confidence 111111122333467999999999999876554332 21 35799999999999764
No 247
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.36 E-value=8.4e-06 Score=87.35 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=86.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
..++|||||..|+.+|..|++. |.+|+|+|+.+.+-. ..++ .
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~-G~~VtvVe~~~~ll~--------------------------~~ld-----------~ 187 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNL-GVETHVIEFAPMLMA--------------------------EQLD-----------Q 187 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccchh--------------------------hhcC-----------H
Confidence 4699999999999999999999 999999998764300 0011 1
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeC-CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCCCchHH
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGV 250 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~~~~g~ 250 (359)
.....+.+. +++.|+++++++.++++..++ +.+..+... ++.++.+|.||+|+|-... .
T Consensus 188 ~~~~~l~~~-L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~--------------dG~~i~~D~Vv~A~G~rPn-----~ 247 (847)
T PRK14989 188 MGGEQLRRK-IESMGVRVHTSKNTLEIVQEGVEARKTMRFA--------------DGSELEVDFIVFSTGIRPQ-----D 247 (847)
T ss_pred HHHHHHHHH-HHHCCCEEEcCCeEEEEEecCCCceEEEEEC--------------CCCEEEcCEEEECCCcccC-----c
Confidence 112333333 457899999999999986543 334444442 2367999999999995543 2
Q ss_pred HHHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEe
Q 018188 251 KRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAE 297 (359)
Q Consensus 251 ~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~ 297 (359)
..+...|+.. .....+.++. . .+.-.|++|..|..+..
T Consensus 248 ~L~~~~Gl~~--~~~G~I~VD~--~-----l~Ts~p~IYAiGD~a~~ 285 (847)
T PRK14989 248 KLATQCGLAV--APRGGIVIND--S-----CQTSDPDIYAIGECASW 285 (847)
T ss_pred hHHhhcCccC--CCCCcEEECC--C-----CcCCCCCEEEeecceeE
Confidence 2344444411 1111222321 1 11124889998876644
No 248
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.36 E-value=8.9e-07 Score=92.68 Aligned_cols=38 Identities=37% Similarity=0.748 Sum_probs=35.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG 129 (359)
..+|+|||+|++||++|+.|++. |.+|+|+|+...+||
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~GG 364 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEIGG 364 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCc
Confidence 46999999999999999999999 999999999988876
No 249
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.35 E-value=6.7e-06 Score=76.80 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 175 STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 175 ~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+.|..++. +.|..++.+-+|.+....+++|+.+.+.+ + ....++|+..|+|+|++=
T Consensus 262 ~~L~~~f~-~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn------~------~diP~~a~~~VLAsGsff 317 (421)
T COG3075 262 NQLQRQFE-QLGGLWMPGDEVKKATCKGGRVTEIYTRN------H------ADIPLRADFYVLASGSFF 317 (421)
T ss_pred HHHHHHHH-HcCceEecCCceeeeeeeCCeEEEEEecc------c------ccCCCChhHeeeeccccc
Confidence 45555554 78999999999999999999998876642 1 236789999999999763
No 250
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.35 E-value=3.5e-06 Score=85.20 Aligned_cols=38 Identities=39% Similarity=0.595 Sum_probs=35.2
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSP 127 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~ 127 (359)
.+||.||||||.||+..|-.|++.|..+|+|||++..+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 46999999999999999999999889999999998755
No 251
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.35 E-value=8.8e-07 Score=89.16 Aligned_cols=38 Identities=34% Similarity=0.612 Sum_probs=35.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG 129 (359)
..+|+|||+|++|+++|..|++. |.+|+|+|+.+.+||
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~GG 180 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRIGG 180 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCCc
Confidence 47999999999999999999999 999999999988876
No 252
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.34 E-value=8.9e-06 Score=81.09 Aligned_cols=139 Identities=21% Similarity=0.256 Sum_probs=88.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
..|+|||+|++|+.+|..|.+. |.+|+++++.+.+.. ..+ ..
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~--------------------------~~~-----------~~ 191 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLEDRILP--------------------------DSF-----------DK 191 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCcccCc--------------------------hhc-----------CH
Confidence 5899999999999999999998 999999998764310 000 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCCCchHHH
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK 251 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~~~~g~~ 251 (359)
++.+.+.+.+ ++.|+++++++++.++.. ++++..+..+ ..++.+|.||+|+|.... ..
T Consensus 192 ~~~~~l~~~l-~~~gI~v~~~~~v~~i~~-~~~~~~v~~~---------------~~~i~~d~vi~a~G~~p~-----~~ 249 (444)
T PRK09564 192 EITDVMEEEL-RENGVELHLNEFVKSLIG-EDKVEGVVTD---------------KGEYEADVVIVATGVKPN-----TE 249 (444)
T ss_pred HHHHHHHHHH-HHCCCEEEcCCEEEEEec-CCcEEEEEeC---------------CCEEEcCEEEECcCCCcC-----HH
Confidence 2234444444 478999999999999854 3444444332 246999999999995432 23
Q ss_pred HHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeec
Q 018188 252 RLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEID 299 (359)
Q Consensus 252 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~ 299 (359)
.+...|+...-.+ .+.++ +. .+.-.|++|..|+.+....
T Consensus 250 ~l~~~gl~~~~~g--~i~vd--~~-----~~t~~~~IyA~GD~~~~~~ 288 (444)
T PRK09564 250 FLEDTGLKTLKNG--AIIVD--EY-----GETSIENIYAAGDCATIYN 288 (444)
T ss_pred HHHhcCccccCCC--CEEEC--CC-----cccCCCCEEEeeeEEEEEe
Confidence 3454444111011 12222 11 1123599999998776543
No 253
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.34 E-value=7.9e-06 Score=87.20 Aligned_cols=136 Identities=15% Similarity=0.229 Sum_probs=86.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
..|+|||||..|+.+|..|++. |.+|+|+|+.+.+-. ..++ .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~-G~~Vtvv~~~~~ll~--------------------------~~ld-----------~ 182 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNL-GMDVSVIHHAPGLMA--------------------------KQLD-----------Q 182 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEccCCchhh--------------------------hhcC-----------H
Confidence 4799999999999999999999 999999998764310 0011 1
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCCCchHHH
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK 251 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~~~~g~~ 251 (359)
.....+ .+.+++.|+++++++.++++..+ +.+.+|... ++.++.+|.||+|+|-... ..
T Consensus 183 ~~~~~l-~~~l~~~GV~v~~~~~v~~i~~~-~~~~~v~~~--------------dG~~i~~D~Vi~a~G~~Pn-----~~ 241 (785)
T TIGR02374 183 TAGRLL-QRELEQKGLTFLLEKDTVEIVGA-TKADRIRFK--------------DGSSLEADLIVMAAGIRPN-----DE 241 (785)
T ss_pred HHHHHH-HHHHHHcCCEEEeCCceEEEEcC-CceEEEEEC--------------CCCEEEcCEEEECCCCCcC-----cH
Confidence 112233 33345789999999999888643 445556553 2367999999999995542 12
Q ss_pred HHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEe
Q 018188 252 RLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAE 297 (359)
Q Consensus 252 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~ 297 (359)
.+...|+... .++.++ +.. +.-.|++|..|..+..
T Consensus 242 la~~~gl~~~----ggI~Vd--~~~-----~Ts~p~IyA~GD~a~~ 276 (785)
T TIGR02374 242 LAVSAGIKVN----RGIIVN--DSM-----QTSDPDIYAVGECAEH 276 (785)
T ss_pred HHHhcCCccC----CCEEEC--CCc-----ccCCCCEEEeeeccee
Confidence 3334444111 222232 111 1234899998876643
No 254
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.32 E-value=1.2e-06 Score=88.13 Aligned_cols=38 Identities=34% Similarity=0.697 Sum_probs=35.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG 129 (359)
..+|+|||+|++|+++|..|++. |.+|+|+|+.+.+||
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~gG 178 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEIGG 178 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCCc
Confidence 47899999999999999999999 999999999988876
No 255
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.31 E-value=1.5e-06 Score=84.07 Aligned_cols=38 Identities=32% Similarity=0.530 Sum_probs=35.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG 129 (359)
..+|+|||+|++|+.+|..|++. |.+|+++|+.+.+||
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~gg 55 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPGG 55 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCc
Confidence 36999999999999999999999 999999999988865
No 256
>PLN02268 probable polyamine oxidase
Probab=98.29 E-value=1.4e-06 Score=86.55 Aligned_cols=64 Identities=27% Similarity=0.480 Sum_probs=48.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccC---Ccce-------eehhcchhHHHHHHHcCCc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLG---GQLF-------SAMVVRKPAQRFLDELGVE 157 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~---g~~~-------~~~~~~~~~~~~l~~~G~~ 157 (359)
+|+|||||++||+||+.|.+. |.+|+|+|+++.+||..+.. |..+ +....+.+..++++++|+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~ 75 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLP 75 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCc
Confidence 799999999999999999998 99999999999999976532 2111 1111123456778888874
No 257
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.27 E-value=2.4e-06 Score=85.85 Aligned_cols=37 Identities=43% Similarity=0.591 Sum_probs=34.3
Q ss_pred ccEEEECCChHHHHHHHHhhc--CCCCeEEEEeeccCCCC
Q 018188 92 TDVIVVGAGSAGLSCAYEISK--NPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~--~~G~~V~vlEk~~~~GG 129 (359)
.+|+|||+||||+.||..|++ . |.+|+|+|+.+.+||
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPTPFG 65 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCCCcc
Confidence 579999999999999999986 5 999999999998876
No 258
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.26 E-value=1.3e-05 Score=76.86 Aligned_cols=139 Identities=19% Similarity=0.331 Sum_probs=81.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCC---CCeEEEEeeccCCCCCcccCCcceeehhc--chhHHHHHHHcCC---------
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNP---SIRVAIIEQSVSPGGGAWLGGQLFSAMVV--RKPAQRFLDELGV--------- 156 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~---G~~V~vlEk~~~~GG~~~~~g~~~~~~~~--~~~~~~~l~~~G~--------- 156 (359)
.|||||||||++|++.|..|..+| .+||+|+|....+-=+.|..+..|...+. ....+.+++.+|.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~ 115 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDRY 115 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhcc
Confidence 599999999999999999998753 57999999884332222333333332221 2233444444332
Q ss_pred -cc----------------eec--C-CeEEEechHHHHHHHH--HHHHhCCCcEEEcceeeeeEEEe-------CCEEEE
Q 018188 157 -EY----------------DEQ--D-NYVVIKHAALFTSTIM--SKLLARPNVKLFNAVAAEDLIVK-------GGRVGG 207 (359)
Q Consensus 157 -~~----------------~~~--~-~~~~~~~~~~~~~~L~--~~~~~~~gv~i~~~~~V~~l~~~-------~~~v~g 207 (359)
+| +.. . +..++.....+...|+ +...+..++++++..++.++..- ++-+.-
T Consensus 116 ~~~~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~ 195 (481)
T KOG3855|consen 116 QKFSRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFH 195 (481)
T ss_pred ccccceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEE
Confidence 11 100 0 0112223334445555 33334678999999988877552 233333
Q ss_pred EEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 208 VVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 208 v~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+... ++..+..|.+|.|+|..+
T Consensus 196 i~l~--------------dg~~~~~~LLigAdg~Ns 217 (481)
T KOG3855|consen 196 ITLT--------------DGINFATDLLIGADGFNS 217 (481)
T ss_pred EEec--------------cCceeeeceeeccccccc
Confidence 3332 346899999999999665
No 259
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.26 E-value=3.3e-06 Score=81.76 Aligned_cols=42 Identities=31% Similarity=0.535 Sum_probs=37.4
Q ss_pred cCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
..+||+||||+|.-||.+|..|++. |.+|+++|++...||..
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~-g~~V~vlerrhv~gGaa 53 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARY-GQSVAVLERRHVIGGAA 53 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhc-CcceEEEEEeeecCcce
Confidence 3469999999999999999999999 99999999997776654
No 260
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.25 E-value=1.4e-06 Score=88.44 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=51.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLD 152 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~ 152 (359)
|||+|||+|++|+.+|+.|+++ |++|+|||++...| +.|.++..++...++.+...+++
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~ 59 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADS-FLKIGAHKKNEIEYQKDIDKFVN 59 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccC-CCcccccccccccccccHHHHHH
Confidence 6999999999999999999999 99999999999987 57778888888877776666554
No 261
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.24 E-value=5.5e-06 Score=84.71 Aligned_cols=61 Identities=23% Similarity=0.358 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 176 TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 176 ~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
.++..+.+..|+++++++.|..|+.++++.++|..... +.. . ....+.++.||+|+|+..+
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~------~~~-~-~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIG------DGG-T-IETAVAAREVVLAAGAINS 267 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeC------CCC-c-eEEEecCceEEEeccccCC
Confidence 33444556788999999999999999999999887521 100 0 1345788999999998874
No 262
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.23 E-value=1.6e-05 Score=79.67 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=71.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
.+|+|||+|.+|+.+|..|++. |.+|+|+|+.+.+.. .+ ..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~---------------------------~~-----------~~ 211 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLDRILP---------------------------GE-----------DA 211 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCCCCC---------------------------CC-----------CH
Confidence 5899999999999999999999 999999999865410 00 01
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++...+.+.+ ++.|++++++++|.++..+++.+. +.... +...++.+|.||+|+|..+.
T Consensus 212 ~~~~~~~~~l-~~~gi~i~~~~~v~~i~~~~~~v~-v~~~~------------g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 212 EVSKVVAKAL-KKKGVKILTNTKVTAVEKNDDQVV-YENKG------------GETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHHHH-HHcCCEEEeCCEEEEEEEeCCEEE-EEEeC------------CcEEEEEeCEEEEecCCccc
Confidence 2233334444 467999999999999987666554 32210 11257999999999996653
No 263
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.22 E-value=1.5e-05 Score=80.16 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=70.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||||++|+.+|..|++. |.+|+|+|+.+.+.. .+ ..
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~~il~---------------------------~~-----------~~ 221 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADF-GVEVTVVEAADRILP---------------------------TE-----------DA 221 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCccCC---------------------------cC-----------CH
Confidence 5899999999999999999999 999999999865310 00 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEe-CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.+...+.+.+ ++.|++++.+++|.++..+ ++++..+... +++..++.+|.||+|+|...
T Consensus 222 ~~~~~l~~~l-~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~------------~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 222 ELSKEVARLL-KKLGVRVVTGAKVLGLTLKKDGGVLIVAEH------------NGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred HHHHHHHHHH-HhcCCEEEeCcEEEEEEEecCCCEEEEEEe------------CCceEEEEeCEEEEeeCCcc
Confidence 2233444444 4679999999999998752 3444333221 11235799999999999665
No 264
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.22 E-value=1.1e-05 Score=78.85 Aligned_cols=199 Identities=20% Similarity=0.218 Sum_probs=112.0
Q ss_pred CCCCCCCcccCCCchhhhhH-HHHHhhhhcc-ccc--CcccEEEECCChHHHHHHHHhhcC------------CCCeEEE
Q 018188 57 PQYDFNSFTFDPIKESIVSR-EMTRRYMTDM-VTY--ADTDVIVVGAGSAGLSCAYEISKN------------PSIRVAI 120 (359)
Q Consensus 57 ~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~DVvIIGgG~aGl~aA~~La~~------------~G~~V~v 120 (359)
+|.....|.+.++++....+ .+.+.+.... ... ...+++|||||+.|...|-+|++. ..++|+|
T Consensus 117 ~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~L 196 (405)
T COG1252 117 PGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVIL 196 (405)
T ss_pred CCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEE
Confidence 44444567777777775432 2221111111 111 225799999999999999888642 0248999
Q ss_pred EeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEE
Q 018188 121 IEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 200 (359)
Q Consensus 121 lEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~ 200 (359)
+|+.+.+-- .| ... .....++.+++.||++++++.|+++..
T Consensus 197 Vea~p~ILp---------------------------~~-----------~~~-l~~~a~~~L~~~GV~v~l~~~Vt~v~~ 237 (405)
T COG1252 197 VEAGPRILP---------------------------MF-----------PPK-LSKYAERALEKLGVEVLLGTPVTEVTP 237 (405)
T ss_pred EccCchhcc---------------------------CC-----------CHH-HHHHHHHHHHHCCCEEEcCCceEEECC
Confidence 999876410 01 111 222345555689999999999999853
Q ss_pred eCCEEEEEEEceeeeeccCCCCCCCCCe-EEEcCEEEEcCCCCCCCCchHHHHHHhcCCcccccccccccccchhhHHhh
Q 018188 201 KGGRVGGVVTNWALVSMNHDTQSCMDPN-VMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVR 279 (359)
Q Consensus 201 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~-~i~A~~VIlAtGg~s~~~~~g~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~ 279 (359)
+. |.+.. +. +|.++.+|.|+|-.++. ..+.+ .|......+. +.++ + .
T Consensus 238 --~~---v~~~~--------------g~~~I~~~tvvWaaGv~a~~---~~~~l--~~~e~dr~Gr--l~V~--~----~ 285 (405)
T COG1252 238 --DG---VTLKD--------------GEEEIPADTVVWAAGVRASP---LLKDL--SGLETDRRGR--LVVN--P----T 285 (405)
T ss_pred --Cc---EEEcc--------------CCeeEecCEEEEcCCCcCCh---hhhhc--ChhhhccCCC--EEeC--C----C
Confidence 32 33321 23 69999999999976642 22221 1110001110 1111 0 0
Q ss_pred hccccCCCeeEeceEEEeecCCCCCCCcc-ceEEEehHHHHHHHHHHhCC
Q 018188 280 LTREIVPGMIVTGMEVAEIDGAPRMGPTF-GAMMISGQKAAHLALKALGQ 328 (359)
Q Consensus 280 ~~~~~~~g~~~~g~~v~~~~g~~~~~~~~-g~~l~sG~~~~~l~l~~~~~ 328 (359)
+.-.-.|++|+.|+.+...+. +..|.. ....-.|..+++.+.+++..
T Consensus 286 L~~~~~~~IFa~GD~A~~~~~--~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 286 LQVPGHPDIFAAGDCAAVIDP--RPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred cccCCCCCeEEEeccccCCCC--CCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 111124789999988777755 223322 22225677778888888865
No 265
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.22 E-value=1.1e-05 Score=79.30 Aligned_cols=135 Identities=18% Similarity=0.304 Sum_probs=85.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
.+|+|||+|..|+.+|..|++. |.+|+|+|+.+.+.+.. + ..
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~~--------------------------~-----------~~ 186 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR-RCKVTVIELAATVMGRN--------------------------A-----------PP 186 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcchhhh--------------------------c-----------CH
Confidence 4799999999999999999999 99999999986542100 0 01
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCCCchHHH
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK 251 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~~~~g~~ 251 (359)
.....+.+.+ ++.|++++++++++++.. ++.+. +... +..++.+|.||+|+|.... ..
T Consensus 187 ~~~~~l~~~l-~~~GV~i~~~~~V~~i~~-~~~~~-v~l~--------------~g~~i~aD~Vv~a~G~~pn-----~~ 244 (396)
T PRK09754 187 PVQRYLLQRH-QQAGVRILLNNAIEHVVD-GEKVE-LTLQ--------------SGETLQADVVIYGIGISAN-----DQ 244 (396)
T ss_pred HHHHHHHHHH-HHCCCEEEeCCeeEEEEc-CCEEE-EEEC--------------CCCEEECCEEEECCCCChh-----hH
Confidence 1223334444 467999999999998865 33332 3332 2357999999999995532 22
Q ss_pred HHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEe
Q 018188 252 RLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAE 297 (359)
Q Consensus 252 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~ 297 (359)
.+...|+.. ..++.++ +. .+.-.|++|..|+.+..
T Consensus 245 l~~~~gl~~----~~gi~vd--~~-----~~ts~~~IyA~GD~a~~ 279 (396)
T PRK09754 245 LAREANLDT----ANGIVID--EA-----CRTCDPAIFAGGDVAIT 279 (396)
T ss_pred HHHhcCCCc----CCCEEEC--CC-----CccCCCCEEEccceEee
Confidence 334444411 1122222 11 11234899999876643
No 266
>PRK07208 hypothetical protein; Provisional
Probab=98.20 E-value=1.5e-06 Score=87.43 Aligned_cols=40 Identities=38% Similarity=0.672 Sum_probs=37.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
..||+|||||++||++|+.|+++ |.+|+|+|+.+.+||.+
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~GG~~ 43 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVGGIS 43 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCcee
Confidence 47999999999999999999999 99999999999999864
No 267
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.20 E-value=2.1e-06 Score=89.71 Aligned_cols=39 Identities=33% Similarity=0.606 Sum_probs=36.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGG 130 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~ 130 (359)
..+|+|||+|++|+.+|+.|++. |.+|+|+|+...+||.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~GG~ 231 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQAGGM 231 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCce
Confidence 46999999999999999999999 9999999999888763
No 268
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.20 E-value=3.7e-06 Score=84.96 Aligned_cols=38 Identities=34% Similarity=0.573 Sum_probs=35.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG 129 (359)
..+|+|||+|++|+.+|..|++. |.+|+|+|+...+||
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~gG 180 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRCGG 180 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCCCc
Confidence 36999999999999999999999 999999999988776
No 269
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.20 E-value=2.4e-05 Score=77.73 Aligned_cols=137 Identities=19% Similarity=0.255 Sum_probs=85.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||+|++|+.+|..|++. |.+|+++++.+.+... .+ ..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~~~~--------------------------~~-----------~~ 179 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER-GKNVTLIHRSERILNK--------------------------LF-----------DE 179 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcccCcc--------------------------cc-----------CH
Confidence 4899999999999999999998 9999999987643100 00 01
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCCCchHHH
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK 251 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~~~~g~~ 251 (359)
.+...+.+.+ ++.|+++++++++.++..++ .+ +... +..++.+|.||+|+|.... ..
T Consensus 180 ~~~~~~~~~l-~~~gV~v~~~~~v~~i~~~~-~~--v~~~--------------~g~~i~~D~vi~a~G~~p~-----~~ 236 (427)
T TIGR03385 180 EMNQIVEEEL-KKHEINLRLNEEVDSIEGEE-RV--KVFT--------------SGGVYQADMVILATGIKPN-----SE 236 (427)
T ss_pred HHHHHHHHHH-HHcCCEEEeCCEEEEEecCC-CE--EEEc--------------CCCEEEeCEEEECCCccCC-----HH
Confidence 1233333334 47799999999999986433 32 2222 1357999999999996542 22
Q ss_pred HHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEee
Q 018188 252 RLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEI 298 (359)
Q Consensus 252 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~ 298 (359)
.+...|+...-.+ .+.++ +.. +.-.|++|..|..+...
T Consensus 237 ~l~~~gl~~~~~G--~i~vd--~~~-----~t~~~~Vya~GD~~~~~ 274 (427)
T TIGR03385 237 LAKDSGLKLGETG--AIWVN--EKF-----QTSVPNIYAAGDVAESH 274 (427)
T ss_pred HHHhcCcccCCCC--CEEEC--CCc-----EeCCCCEEEeeeeEEee
Confidence 3444444111111 12222 111 11358999998877544
No 270
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.20 E-value=3e-06 Score=88.47 Aligned_cols=38 Identities=34% Similarity=0.696 Sum_probs=35.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG 129 (359)
..+|+|||+|++|+++|+.|++. |.+|+|+|+...+||
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~GG 347 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEIGG 347 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCCCC
Confidence 47899999999999999999999 999999999998876
No 271
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.20 E-value=1.6e-05 Score=79.21 Aligned_cols=97 Identities=13% Similarity=0.199 Sum_probs=69.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||+|++|+.+|..|++. |.+|+|+|+.+.+... + ..
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~---------------------------~-----------~~ 198 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTILPR---------------------------E-----------EP 198 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCccCCC---------------------------C-----------CH
Confidence 4799999999999999999998 9999999998654110 0 01
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++... +.+.+++.|++++++++|+++..+++.+. +.. +..++.+|.||+|+|....
T Consensus 199 ~~~~~-~~~~l~~~GI~i~~~~~V~~i~~~~~~v~-v~~---------------~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 199 SVAAL-AKQYMEEDGITFLLNAHTTEVKNDGDQVL-VVT---------------EDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHH-HHHHHHHcCCEEEcCCEEEEEEecCCEEE-EEE---------------CCeEEEcCEEEEeeCCCCC
Confidence 11222 23333477999999999999976554432 221 1357999999999996653
No 272
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.19 E-value=1.8e-05 Score=78.59 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=68.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
..+|||||||.+|+.+|..|.+. +.+|+|||+.+.. .+.. . +-.+... . ...
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~---------~~~~------~---l~~~~~g--~-------~~~ 61 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM---------LFTP------L---LPQTTTG--T-------LEF 61 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc---------chhh------h---HHHhccc--C-------CCh
Confidence 47899999999999999999776 7999999988643 0110 0 0000000 0 001
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
......+... .+..+++++.+ +|++|..+++.|.. .... .+...+.+..++.+|++|+|||...
T Consensus 62 ~~~~~~~~~~-~~~~~~~~i~~-~V~~Id~~~~~v~~-~~~~------~~~~~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 62 RSICEPVRPA-LAKLPNRYLRA-VVYDVDFEEKRVKC-GVVS------KSNNANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred HHhHHHHHHH-hccCCeEEEEE-EEEEEEcCCCEEEE-eccc------ccccccCCceEecCCEEEECCCccc
Confidence 1122223233 33567887765 89998777665542 1100 0000001346799999999999864
No 273
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=1.8e-06 Score=87.03 Aligned_cols=41 Identities=37% Similarity=0.532 Sum_probs=38.2
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
+..+|||||||++||+||.+|.+. |++|+|+|.++.+||..
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVGGRI 54 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcCcee
Confidence 457999999999999999999999 99999999999999765
No 274
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.17 E-value=2e-05 Score=79.20 Aligned_cols=100 Identities=16% Similarity=0.233 Sum_probs=70.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-+|+|||+|..|+.+|..|++. |.+|+|+|+.+.+.. .+ ..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~---------------------------~~-----------d~ 207 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSDRLLP---------------------------RE-----------EP 207 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCcCCC---------------------------cc-----------CH
Confidence 5899999999999999999999 999999999865410 00 01
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++...+.+.+ ++.|++++++++|+++..+++.+ .+.... .+...++.+|.||+|+|...
T Consensus 208 ~~~~~l~~~l-~~~gV~i~~~~~V~~i~~~~~~~-~v~~~~-----------~~~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 208 EISAAVEEAL-AEEGIEVVTSAQVKAVSVRGGGK-IITVEK-----------PGGQGEVEADELLVATGRRP 266 (463)
T ss_pred HHHHHHHHHH-HHcCCEEEcCcEEEEEEEcCCEE-EEEEEe-----------CCCceEEEeCEEEEeECCCc
Confidence 1223333333 46799999999999997655432 232210 01236799999999999654
No 275
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.17 E-value=2.8e-05 Score=78.07 Aligned_cols=100 Identities=17% Similarity=0.169 Sum_probs=70.9
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||+|+.|+.+|..|++. |.+|+++|+.+.+.. .+ ..
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~---------------------------~~-----------~~ 213 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASL-GAEVTIVEALPRILP---------------------------GE-----------DK 213 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCcCC---------------------------cC-----------CH
Confidence 4799999999999999999999 999999999865410 00 01
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++...+.+.+ ++.|++++++++|.++..+++.+. +...+ . +...++.+|.||+|+|...
T Consensus 214 ~~~~~l~~~l-~~~gV~i~~~~~V~~i~~~~~~v~-v~~~~------g-----g~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 214 EISKLAERAL-KKRGIKIKTGAKAKKVEQTDDGVT-VTLED------G-----GKEETLEADYVLVAVGRRP 272 (462)
T ss_pred HHHHHHHHHH-HHcCCEEEeCCEEEEEEEeCCEEE-EEEEe------C-----CeeEEEEeCEEEEeeCCcc
Confidence 2233333334 477999999999999987665443 32211 0 1225799999999999665
No 276
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.16 E-value=5.3e-06 Score=88.43 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=34.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG 129 (359)
...|+|||+||||+++|+.|++. |.+|+|+|+....|+
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLKITLL 420 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccccccc
Confidence 46899999999999999999999 999999999865544
No 277
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=3e-05 Score=77.95 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=70.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+.. .+ ..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~~l~---------------------------~~-----------d~ 213 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFLDRALP---------------------------NE-----------DA 213 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCcCC---------------------------cc-----------CH
Confidence 4899999999999999999999 999999998764310 00 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++...+.+.+ ++.|++++++++|+++..+++.+. +.... .+++..++.+|.||+|+|...
T Consensus 214 ~~~~~l~~~l-~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~----------~~g~~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 214 EVSKEIAKQY-KKLGVKILTGTKVESIDDNGSKVT-VTVSK----------KDGKAQELEADKVLQAIGFAP 273 (466)
T ss_pred HHHHHHHHHH-HHCCCEEEECCEEEEEEEeCCeEE-EEEEe----------cCCCeEEEEeCEEEECcCccc
Confidence 2233444444 467999999999999976554432 22210 011235799999999999654
No 278
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.16 E-value=2.6e-05 Score=78.20 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=69.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-+++|||+|++|+.+|..+.+. |.+|+|+|+.+.+.. .+ ..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~ll~---------------------------~~-----------d~ 211 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAPQLLP---------------------------GE-----------DE 211 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcCc---------------------------cc-----------cH
Confidence 4799999999999999999998 999999998865410 00 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++.+.+.+.+ ++.|+++++++++.++..++..+. +... +...++.+|.||+|+|...
T Consensus 212 e~~~~l~~~L-~~~GI~i~~~~~V~~i~~~~~~v~-~~~~-------------g~~~~i~~D~vivA~G~~p 268 (458)
T PRK06912 212 DIAHILREKL-ENDGVKIFTGAALKGLNSYKKQAL-FEYE-------------GSIQEVNAEFVLVSVGRKP 268 (458)
T ss_pred HHHHHHHHHH-HHCCCEEEECCEEEEEEEcCCEEE-EEEC-------------CceEEEEeCEEEEecCCcc
Confidence 2234444444 467999999999999875544322 2111 1224799999999999654
No 279
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.15 E-value=2.8e-05 Score=78.00 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=71.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
..|+|||+|..|+.+|..|++. |.+|+|+|+.+.+.. .+ ..
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~---------------------------~~-----------d~ 216 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDRLLS---------------------------FL-----------DD 216 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcCC---------------------------cC-----------CH
Confidence 5899999999999999999999 999999999865411 00 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++...+.+.+ ++.|++++++++|+++..+++.+. +... +..++.+|.||+|+|...
T Consensus 217 ~~~~~l~~~l-~~~gI~v~~~~~v~~i~~~~~~~~-v~~~--------------~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 217 EISDALSYHL-RDSGVTIRHNEEVEKVEGGDDGVI-VHLK--------------SGKKIKADCLLYANGRTG 272 (461)
T ss_pred HHHHHHHHHH-HHcCCEEEECCEEEEEEEeCCeEE-EEEC--------------CCCEEEeCEEEEeecCCc
Confidence 2234444454 467999999999999976655433 2221 125799999999999654
No 280
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.15 E-value=2.2e-05 Score=79.92 Aligned_cols=98 Identities=20% Similarity=0.333 Sum_probs=71.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
.+|+|||||..|+.+|..|++. +.+|+|+|+.+.+. .
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~~l~-----------------------------------------~- 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFADELK-----------------------------------------A- 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCCcCC-----------------------------------------h-
Confidence 4899999999999999999998 89999999875431 0
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
...+.+.+.+..|+++++++.+.++..+++++.+|...+. ..++..++.+|.||+|+|...
T Consensus 390 --~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~---------~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 390 --DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDR---------NSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred --hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEEC---------CCCcEEEEEcCEEEEEeCCcC
Confidence 0112333333369999999999999766677776665321 112236799999999999554
No 281
>PRK06116 glutathione reductase; Validated
Probab=98.15 E-value=3e-05 Score=77.60 Aligned_cols=98 Identities=12% Similarity=0.197 Sum_probs=70.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
..|+|||+|..|+.+|..|++. |.+|+++++.+.+.. .+ ..
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~---------------------------~~-----------~~ 208 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDAPLR---------------------------GF-----------DP 208 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCcc---------------------------cc-----------CH
Confidence 4799999999999999999999 999999998764310 00 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++...+.+.+ ++.|++++++++|.++..+++....+... +..++.+|.||+|+|...
T Consensus 209 ~~~~~l~~~L-~~~GV~i~~~~~V~~i~~~~~g~~~v~~~--------------~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 209 DIRETLVEEM-EKKGIRLHTNAVPKAVEKNADGSLTLTLE--------------DGETLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHHHHHHH-HHCCcEEECCCEEEEEEEcCCceEEEEEc--------------CCcEEEeCEEEEeeCCCc
Confidence 2234444444 47899999999999998754431223332 135799999999999654
No 282
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.14 E-value=1.3e-05 Score=78.77 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=61.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcc------------hhHHHHHHHcC-Ccc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVR------------KPAQRFLDELG-VEY 158 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~------------~~~~~~l~~~G-~~~ 158 (359)
.||+|||||++|+.+|+.|++. |++|+|+|+.+.......... .+..+.+. ....+.++.+| +.+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~~s~a~~~~-~~~ervca~Slgs~~ll~a~Gll~~em~~lgsl~~ 80 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVKKTPAHHTD-GFAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLIM 80 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCccCcccccCc-cccccccchhhhhhhHHhcCCchHHHHHHhcchhe
Confidence 4899999999999999999999 999999998765432111000 01111100 01112333333 112
Q ss_pred eec------CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeE
Q 018188 159 DEQ------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL 198 (359)
Q Consensus 159 ~~~------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l 198 (359)
... .......+...+.+.|.+.+.+.++++++ ..+|+++
T Consensus 81 ~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l 125 (436)
T PRK05335 81 EAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEI 125 (436)
T ss_pred ecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhcc
Confidence 111 11122344555778888887777889987 4466666
No 283
>PRK06370 mercuric reductase; Validated
Probab=98.14 E-value=3.9e-05 Score=77.04 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=70.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-+|+|||+|..|+.+|..|++. |.+|+|+|+.+.+... + ..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~l~~---------------------------~-----------~~ 212 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGPRLLPR---------------------------E-----------DE 212 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCCCcc---------------------------c-----------CH
Confidence 5899999999999999999999 9999999998654110 0 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++...+.+.+ ++.|++++++++|.++..+++.+ .+.... . ++..++.+|.||+|+|...
T Consensus 213 ~~~~~l~~~l-~~~GV~i~~~~~V~~i~~~~~~~-~v~~~~-------~----~~~~~i~~D~Vi~A~G~~p 271 (463)
T PRK06370 213 DVAAAVREIL-EREGIDVRLNAECIRVERDGDGI-AVGLDC-------N----GGAPEITGSHILVAVGRVP 271 (463)
T ss_pred HHHHHHHHHH-HhCCCEEEeCCEEEEEEEcCCEE-EEEEEe-------C----CCceEEEeCEEEECcCCCc
Confidence 1223333333 47899999999999997665443 222210 0 1235799999999999654
No 284
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.14 E-value=2.3e-05 Score=74.69 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 169 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 169 ~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++..+...|.+.+. +.|++++.+++|+++..+++++.+|.+. ..+++||.||+|+|.++.
T Consensus 135 ~p~~l~~~l~~~~~-~~g~~~~~~~~v~~i~~~~~~~~~v~~~---------------~g~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 135 DPRALLKALEKALE-KLGVEIIEHTEVQHIEIRGEKVTAIVTP---------------SGDVQADQVVLAAGAWAG 194 (337)
T ss_pred ChHHHHHHHHHHHH-HcCCEEEccceEEEEEeeCCEEEEEEcC---------------CCEEECCEEEEcCChhhh
Confidence 45667778777765 6799999999999999888878777653 247999999999996653
No 285
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.12 E-value=1.6e-05 Score=77.60 Aligned_cols=99 Identities=28% Similarity=0.356 Sum_probs=74.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
.+|+|||+|+.|+.+|..|+++ |++|+++|+.+.+++.... .
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~~~~~~-------------------------------------~ 178 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLGGQLLD-------------------------------------P 178 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccchhhhh-------------------------------------H
Confidence 6999999999999999999999 9999999999887652110 1
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEE--EEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGG--VVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~g--v~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.+... +.+..++.|+++++++.+.++...++.... +... ....+.+|.+++++|...
T Consensus 179 ~~~~~-~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~--------------~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 179 EVAEE-LAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGI--------------DGEEIKADLVIIGPGERP 237 (415)
T ss_pred HHHHH-HHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEe--------------CCcEEEeeEEEEeecccc
Confidence 12233 333445788999999999999876654332 2221 247799999999999665
No 286
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.8e-05 Score=70.29 Aligned_cols=116 Identities=15% Similarity=0.223 Sum_probs=76.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
..|+|||+||++-.+|+.+++. .+|.+|+|-.- .+| ...+|++....- .+..+.|+--....
T Consensus 9 e~v~IiGSGPAa~tAAiYaara-elkPllfEG~~-~~~-i~pGGQLtTTT~---------------veNfPGFPdgi~G~ 70 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARA-ELKPLLFEGMM-ANG-IAPGGQLTTTTD---------------VENFPGFPDGITGP 70 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhc-ccCceEEeeee-ccC-cCCCceeeeeec---------------cccCCCCCcccccH
Confidence 5899999999999999999999 89999999642 221 122333322111 01112233333455
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++++.+.++.. +.|.+|+.+ .|.++.....-+. +.+ +...+.|+.||+|||+..
T Consensus 71 ~l~d~mrkqs~-r~Gt~i~tE-tVskv~~sskpF~-l~t---------------d~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 71 ELMDKMRKQSE-RFGTEIITE-TVSKVDLSSKPFK-LWT---------------DARPVTADAVILATGASA 124 (322)
T ss_pred HHHHHHHHHHH-hhcceeeee-ehhhccccCCCeE-EEe---------------cCCceeeeeEEEecccce
Confidence 67777666664 789999887 6777766544332 322 247799999999999765
No 287
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.11 E-value=3.6e-05 Score=77.11 Aligned_cols=100 Identities=9% Similarity=0.085 Sum_probs=70.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||||..|+..|..|++. |.+|+|+|+.+.+.. .+ ..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~il~---------------------------~~-----------d~ 207 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGL-GSETHLVIRHERVLR---------------------------SF-----------DS 207 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCc---------------------------cc-----------CH
Confidence 4899999999999999999999 999999999865410 01 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++...+.+.+ ++.|++++.++.++++..+++....+...+ ....+.+|.||+|+|....
T Consensus 208 ~~~~~~~~~l-~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~-------------g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 208 MISETITEEY-EKEGINVHKLSKPVKVEKTVEGKLVIHFED-------------GKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HHHHHHHHHH-HHcCCEEEcCCEEEEEEEeCCceEEEEECC-------------CcEEEEcCEEEEeeCCCcC
Confidence 2233444444 478999999999999976543222233321 1256999999999996543
No 288
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.10 E-value=3.4e-06 Score=82.17 Aligned_cols=40 Identities=33% Similarity=0.535 Sum_probs=37.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW 132 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~ 132 (359)
+||+|||||++|+++|+.|++. |.+|+|||++..+||.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCCcee
Confidence 6999999999999999999998 999999999998988653
No 289
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.10 E-value=3.7e-05 Score=76.60 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=73.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.++|||||..|+..|..+++. |.+|+|||+.+.+-- .+ ..
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~iLp---------------------------~~-----------D~ 214 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRILP---------------------------GE-----------DP 214 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCC---------------------------cC-----------CH
Confidence 4799999999999999999999 999999999986510 01 12
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++.+.+.+.+. +.|+++++++++..+...++.+ .+...+ ++..++++|.|++|+|...
T Consensus 215 ei~~~~~~~l~-~~gv~i~~~~~v~~~~~~~~~v-~v~~~~------------g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 215 EISKELTKQLE-KGGVKILLNTKVTAVEKKDDGV-LVTLED------------GEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred HHHHHHHHHHH-hCCeEEEccceEEEEEecCCeE-EEEEec------------CCCCEEEeeEEEEccCCcc
Confidence 33444445554 5789999999999998766653 344421 1223799999999999654
No 290
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.09 E-value=4e-06 Score=78.06 Aligned_cols=41 Identities=34% Similarity=0.436 Sum_probs=39.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL 133 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~ 133 (359)
+|.+|||+|.+|+.+|..|++. |.+|+||||++.+||+|+.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCCCcccc
Confidence 7999999999999999999999 9999999999999999863
No 291
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.09 E-value=6.7e-06 Score=82.25 Aligned_cols=63 Identities=27% Similarity=0.386 Sum_probs=46.4
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCccc----CCcceeeh-----hcchhHHHHHHHcCC
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWL----GGQLFSAM-----VVRKPAQRFLDELGV 156 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~----~g~~~~~~-----~~~~~~~~~l~~~G~ 156 (359)
+|+|||||++||++|+.|+++ |.+|+|+|+.+.+||.++. .|..++.- ...+...++++++|+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~ 72 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNI 72 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCC
Confidence 489999999999999999999 9999999999999986532 22222211 112345677777765
No 292
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.08 E-value=5.5e-05 Score=76.07 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=70.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||+|+.|+..|..+++. |.+|+|+|+.+.+.. .+ ..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~~il~---------------------------~~-----------d~ 215 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLDRICP---------------------------GT-----------DT 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCCCCC---------------------------CC-----------CH
Confidence 5799999999999999999999 999999998765410 00 01
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++...+.+.+ ++.|++++++++|.++..+++.+. +.... .+ .++...+.+|.||+|+|...
T Consensus 216 ~~~~~l~~~l-~~~gV~i~~~~~V~~i~~~~~~v~-v~~~~------~~---~g~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 216 ETAKTLQKAL-TKQGMKFKLGSKVTGATAGADGVS-LTLEP------AA---GGAAETLQADYVLVAIGRRP 276 (466)
T ss_pred HHHHHHHHHH-HhcCCEEEECcEEEEEEEcCCeEE-EEEEE------cC---CCceeEEEeCEEEEccCCcc
Confidence 1233344444 467999999999999976544432 22210 00 11346799999999999654
No 293
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.08 E-value=6.9e-06 Score=84.55 Aligned_cols=38 Identities=39% Similarity=0.633 Sum_probs=35.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG 129 (359)
..+|+|||+|++||.+|+.|++. |.+|+|+|+.+.+||
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~GG 174 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKLGG 174 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCC
Confidence 46899999999999999999999 999999999988876
No 294
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.07 E-value=3.5e-05 Score=78.50 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=99.9
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
.+|+|||||..|+.+|..|+.. +.+|+|+++.+.+..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~l~~------------------------------------------ 388 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPELKA------------------------------------------ 388 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEECccccc------------------------------------------
Confidence 4899999999999999999998 999999998764310
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCCCchHHH
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK 251 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~~~~g~~ 251 (359)
...+.+.+.+..|+++++++.+.++..+++++.++...+ . .++...++.+|.|++|+|..... .+
T Consensus 389 --~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~------~---~~g~~~~i~~D~v~~~~G~~p~~--~~-- 453 (517)
T PRK15317 389 --DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKD------R---TTGEEHHLELEGVFVQIGLVPNT--EW-- 453 (517)
T ss_pred --cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEE------C---CCCcEEEEEcCEEEEeECCccCc--hH--
Confidence 011233343346999999999999987667777766532 1 11234679999999999965421 12
Q ss_pred HHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCccceEEEehHHHHHHHHHHhCCC
Q 018188 252 RLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQP 329 (359)
Q Consensus 252 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~~ 329 (359)
+... + ..-+ ...+.++ +. .+.-.||+|..|.....-. ...-..+..|..++.-+.+.|..+
T Consensus 454 -l~~~-v-~~~~-~g~i~vd--~~-----l~Ts~p~IyAaGDv~~~~~------k~~~~A~~eG~~Aa~~~~~~l~~~ 514 (517)
T PRK15317 454 -LKGT-V-ELNR-RGEIIVD--AR-----GATSVPGVFAAGDCTTVPY------KQIIIAMGEGAKAALSAFDYLIRN 514 (517)
T ss_pred -Hhhh-e-eeCC-CCcEEEC--cC-----CCCCCCCEEECccccCCCC------CEEEEhhhhHHHHHHHHHHHHhhc
Confidence 2111 1 0000 0011111 11 1223589999887653211 011112267788887777777544
No 295
>PLN02507 glutathione reductase
Probab=98.07 E-value=4.4e-05 Score=77.47 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=70.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-+|+|||+|..|+..|..+++. |.+|+|+++.+.+-. .+ ..
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~~l~---------------------------~~-----------d~ 244 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGM-GATVDLFFRKELPLR---------------------------GF-----------DD 244 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCCcCc---------------------------cc-----------CH
Confidence 4799999999999999999999 999999998764310 00 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++...+.+.+ ++.|++++.+++|.++..+++.+. +... +..++.+|.||+|+|....
T Consensus 245 ~~~~~l~~~l-~~~GI~i~~~~~V~~i~~~~~~~~-v~~~--------------~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 245 EMRAVVARNL-EGRGINLHPRTNLTQLTKTEGGIK-VITD--------------HGEEFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHHHHH-HhCCCEEEeCCEEEEEEEeCCeEE-EEEC--------------CCcEEEcCEEEEeecCCCC
Confidence 2233334444 477999999999999976655432 2221 2357999999999996653
No 296
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.07 E-value=5e-05 Score=71.62 Aligned_cols=39 Identities=33% Similarity=0.567 Sum_probs=35.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
..+|.|||+|++||+||+.|+++ .+|+|+|.+...||..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlGGha 46 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLGGHA 46 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc--cceEEEeccccccCcc
Confidence 46899999999999999999987 8999999999998764
No 297
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.07 E-value=1.1e-05 Score=80.62 Aligned_cols=37 Identities=30% Similarity=0.556 Sum_probs=33.4
Q ss_pred ccEEEECCChHHHHHHHHhh-cCCCCeEEEEeeccCCCC
Q 018188 92 TDVIVVGAGSAGLSCAYEIS-KNPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La-~~~G~~V~vlEk~~~~GG 129 (359)
..|+||||||+|+.||..|. +. |.+|.|+||.+.+||
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~-g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHE-RVKVDIFEKLPNPYG 77 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc-CCeEEEEecCCCCcc
Confidence 57999999999999999765 56 999999999999976
No 298
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.06 E-value=1.6e-05 Score=77.21 Aligned_cols=105 Identities=14% Similarity=0.257 Sum_probs=64.2
Q ss_pred cEEEECCChHHHHHHHHhhcC--CCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 93 DVIVVGAGSAGLSCAYEISKN--PSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~--~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
.|||||||++|+.+|..|.++ ++.+|+|||+.... .+... ...++. |. ...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~---------~~~~~-----~~~~~~--g~-----------~~~ 53 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT---------PYSGM-----LPGMIA--GH-----------YSL 53 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC---------cccch-----hhHHHh--ee-----------CCH
Confidence 489999999999999999642 37899999988642 01000 000000 00 001
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.++...+ .+..++.|++++.+ +|+.+..++.. |.+. +..++.+|++|+|||...
T Consensus 54 ~~~~~~~-~~~~~~~gv~~~~~-~v~~id~~~~~---V~~~--------------~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 54 DEIRIDL-RRLARQAGARFVIA-EATGIDPDRRK---VLLA--------------NRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHhcccH-HHHHHhcCCEEEEE-EEEEEecccCE---EEEC--------------CCCcccccEEEEccCCCC
Confidence 1112222 22334678998876 78888766553 3332 235699999999999764
No 299
>PRK13984 putative oxidoreductase; Provisional
Probab=98.06 E-value=9e-06 Score=84.41 Aligned_cols=39 Identities=38% Similarity=0.668 Sum_probs=35.9
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG 129 (359)
...+|+|||+|++|+++|..|++. |.+|+|+|+...+||
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~gG 320 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKPGG 320 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCc
Confidence 346899999999999999999999 999999999988876
No 300
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.06 E-value=7.1e-05 Score=74.68 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=84.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-+|+|||||..|+.+|..|++. |.+|+|+++.+.+.. .+ ..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l~~---------------------------~~-----------d~ 189 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYER-GLHPTLIHRSDKINK---------------------------LM-----------DA 189 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEEEecccccch---------------------------hc-----------CH
Confidence 4799999999999999999999 999999998764311 00 01
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCCCchHHH
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK 251 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~~~~g~~ 251 (359)
++...+.+.+ ++.|+++++++++.++. +.. +... +...+.+|.||+|+|.... ..
T Consensus 190 ~~~~~l~~~l-~~~gI~i~~~~~v~~i~--~~~---v~~~--------------~g~~~~~D~vl~a~G~~pn-----~~ 244 (438)
T PRK13512 190 DMNQPILDEL-DKREIPYRLNEEIDAIN--GNE---VTFK--------------SGKVEHYDMIIEGVGTHPN-----SK 244 (438)
T ss_pred HHHHHHHHHH-HhcCCEEEECCeEEEEe--CCE---EEEC--------------CCCEEEeCEEEECcCCCcC-----hH
Confidence 2233334444 47899999999999884 222 3332 1256899999999996542 22
Q ss_pred HHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEee
Q 018188 252 RLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEI 298 (359)
Q Consensus 252 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~ 298 (359)
.+...|+...-.+ .+.++ +.. +.-.|++|..|+.+...
T Consensus 245 ~l~~~gl~~~~~G--~i~Vd--~~~-----~t~~~~IyA~GD~~~~~ 282 (438)
T PRK13512 245 FIESSNIKLDDKG--FIPVN--DKF-----ETNVPNIYAIGDIITSH 282 (438)
T ss_pred HHHhcCcccCCCC--cEEEC--CCc-----ccCCCCEEEeeeeEEee
Confidence 3444443110001 12222 111 11349999999877543
No 301
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.05 E-value=7e-05 Score=75.51 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=72.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+.. .+ ..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~---------------------------~~-----------d~ 224 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRL-GAEVTILEALPAFLA---------------------------AA-----------DE 224 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCccCC---------------------------cC-----------CH
Confidence 4899999999999999999999 999999999865310 00 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++...+.+.+. +.|++++.+++|+++..+++.+. +...+ . ++...++.+|.||+|+|....
T Consensus 225 ~~~~~~~~~l~-~~gi~i~~~~~v~~i~~~~~~v~-v~~~~------~----~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 225 QVAKEAAKAFT-KQGLDIHLGVKIGEIKTGGKGVS-VAYTD------A----DGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred HHHHHHHHHHH-HcCcEEEeCcEEEEEEEcCCEEE-EEEEe------C----CCceeEEEcCEEEEccCCccC
Confidence 22344444443 67999999999999977655443 33211 0 112357999999999996553
No 302
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.03 E-value=4.5e-06 Score=83.07 Aligned_cols=38 Identities=34% Similarity=0.635 Sum_probs=35.3
Q ss_pred cEEEECCChHHHHHHHHhhcCCC--CeEEEEeeccCCCCCc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPS--IRVAIIEQSVSPGGGA 131 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G--~~V~vlEk~~~~GG~~ 131 (359)
+|+|||||++||+||+.|+++ | .+|+|+|+.+.+||..
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLGGKI 41 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCcceE
Confidence 699999999999999999998 7 8999999999998764
No 303
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.03 E-value=5.9e-05 Score=75.87 Aligned_cols=98 Identities=20% Similarity=0.242 Sum_probs=70.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
..++|||+|..|+.+|..|++. |.+|+++++.+.+... + ..
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~~l~~---------------------------~-----------d~ 218 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDRVLPG---------------------------E-----------DA 218 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcCCCC---------------------------C-----------CH
Confidence 4799999999999999999999 9999999987654110 0 01
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
.....+.+. +++.|+++++++++.++..+++.+. +... +..++.+|.||+|+|....
T Consensus 219 ~~~~~l~~~-L~~~gV~i~~~~~v~~v~~~~~~~~-v~~~--------------~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 219 DAAEVLEEV-FARRGMTVLKRSRAESVERTGDGVV-VTLT--------------DGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred HHHHHHHHH-HHHCCcEEEcCCEEEEEEEeCCEEE-EEEC--------------CCcEEEecEEEEeecCCcC
Confidence 112333333 3478999999999999976655543 3322 1357999999999996553
No 304
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.03 E-value=4.1e-05 Score=72.95 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=77.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
...+|||+|..||..+.--.+. |.+|+++|-.+.+|+. +|.
T Consensus 212 k~~~viG~G~IGLE~gsV~~rL-GseVT~VEf~~~i~~~---------------------------mD~----------- 252 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRL-GSEVTVVEFLDQIGGV---------------------------MDG----------- 252 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhc-CCeEEEEEehhhhccc---------------------------cCH-----------
Confidence 4689999999999999888888 9999999998877652 111
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+ +....++.+++.|++++++++|.....+++...-+.+.+ . ..++..+++||.+.+|.|....
T Consensus 253 E-isk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~------a---k~~k~~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 253 E-ISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVEN------A---KTGKKETLECDVLLVSIGRRPF 315 (506)
T ss_pred H-HHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEe------c---CCCceeEEEeeEEEEEccCccc
Confidence 1 333455666678999999999999988765333344432 1 1234688999999999996653
No 305
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.02 E-value=9.5e-06 Score=81.39 Aligned_cols=65 Identities=20% Similarity=0.381 Sum_probs=47.0
Q ss_pred cEEEECCChHHHHHHHHhhcC-----CCCeEEEEeeccCCCCCcccC---Ccceee----h-hcchhHHHHHHHcCCc
Q 018188 93 DVIVVGAGSAGLSCAYEISKN-----PSIRVAIIEQSVSPGGGAWLG---GQLFSA----M-VVRKPAQRFLDELGVE 157 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~-----~G~~V~vlEk~~~~GG~~~~~---g~~~~~----~-~~~~~~~~~l~~~G~~ 157 (359)
+|+|||||++||+||+.|++. .|.+|+|+|+.+.+||.++.. |..+.. + .......++++++|++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLE 80 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence 699999999999999999985 148999999999999876432 222211 1 1123456788888863
No 306
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.01 E-value=7.4e-05 Score=74.55 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=70.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||+|..|+..|..|++. |.+|+|+|+.+.+.. .+ ..
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~---------------------------~~-----------~~ 199 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANF-GSKVTILEAASLFLP---------------------------RE-----------DR 199 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCC---------------------------Cc-----------CH
Confidence 4899999999999999999999 999999999764310 00 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
.+...+.+.+ ++.|+++++++++.++..+++.+. +... ..++.+|.||+|+|....
T Consensus 200 ~~~~~l~~~l-~~~gV~v~~~~~v~~i~~~~~~v~-v~~~---------------~g~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 200 DIADNIATIL-RDQGVDIILNAHVERISHHENQVQ-VHSE---------------HAQLAVDALLIASGRQPA 255 (441)
T ss_pred HHHHHHHHHH-HhCCCEEEeCCEEEEEEEcCCEEE-EEEc---------------CCeEEeCEEEEeecCCcC
Confidence 2234444444 478999999999999977655432 2221 245889999999996653
No 307
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.00 E-value=7.1e-05 Score=70.01 Aligned_cols=97 Identities=16% Similarity=0.310 Sum_probs=68.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
.+|+|||+|..|+.+|..|++. +.+|+++++.+... .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~~~~~-----------------------------~------------- 178 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRI-AKKVTLVHRRDKFR-----------------------------A------------- 178 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhh-cCEEEEEEeCcccC-----------------------------c-------------
Confidence 5899999999999999999998 99999999875320 0
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
...+.+.+.++.|+++++++++.++..++ ++..+.... . ..++..++.+|.||+|+|...
T Consensus 179 --~~~~~~~l~~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~------~---~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 179 --EKILLDRLRKNPNIEFLWNSTVKEIVGDN-KVEGVKIKN------T---VTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred --CHHHHHHHHhCCCeEEEeccEEEEEEccC-cEEEEEEEe------c---CCCceEEEEccEEEEeeCCCC
Confidence 01223334333499999999999987543 555554321 0 112347899999999999544
No 308
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.00 E-value=7.7e-05 Score=74.60 Aligned_cols=97 Identities=9% Similarity=0.161 Sum_probs=69.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||+|..|+.+|..+++. |.+|+++++.+.+.. .+ ..
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~l~---------------------------~~-----------d~ 207 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGL-GVQVTLIYRGELILR---------------------------GF-----------DD 207 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCCCCc---------------------------cc-----------CH
Confidence 4799999999999999999998 999999998764310 00 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++...+.+.+ ++.|++++.+++|.++..+++.+. +... +..++.+|.||+|+|...
T Consensus 208 ~~~~~l~~~l-~~~gV~i~~~~~v~~i~~~~~~~~-v~~~--------------~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 208 DMRALLARNM-EGRGIRIHPQTSLTSITKTDDGLK-VTLS--------------HGEEIVADVVLFATGRSP 263 (446)
T ss_pred HHHHHHHHHH-HHCCCEEEeCCEEEEEEEcCCeEE-EEEc--------------CCcEeecCEEEEeeCCCc
Confidence 2233334444 467999999999999976554432 3221 135799999999999654
No 309
>PLN02576 protoporphyrinogen oxidase
Probab=97.99 E-value=7e-06 Score=83.02 Aligned_cols=42 Identities=36% Similarity=0.613 Sum_probs=37.2
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
.++||+|||||++||++|+.|+++.|.+|+|+|+...+||.+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence 347999999999999999999875259999999999999875
No 310
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.99 E-value=9.9e-05 Score=72.68 Aligned_cols=138 Identities=24% Similarity=0.283 Sum_probs=77.9
Q ss_pred ccEEEECCChHHHHHHHHhhcCC--CCeEEEEeeccCCCCCcccC-Cc---cee----ehh-----cchhHHHHHHHcCC
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNP--SIRVAIIEQSVSPGGGAWLG-GQ---LFS----AMV-----VRKPAQRFLDELGV 156 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~--G~~V~vlEk~~~~GG~~~~~-g~---~~~----~~~-----~~~~~~~~l~~~G~ 156 (359)
++|+|||+|++|+++|.+|.+.+ ..++.|+|+....|.+.-.. .. ..+ .+. ......+||.+.+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 68999999999999999998742 33499999999887654322 11 111 011 12347789988633
Q ss_pred cceec-------CCeEEEechHHHHHHHHHHHHhCCC---cEEEcceeeeeEEEeC-CEEEEEEEceeeeeccCCCCCCC
Q 018188 157 EYDEQ-------DNYVVIKHAALFTSTIMSKLLARPN---VKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCM 225 (359)
Q Consensus 157 ~~~~~-------~~~~~~~~~~~~~~~L~~~~~~~~g---v~i~~~~~V~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g 225 (359)
.+... ..|....--++|+...+..+.++.- +. +...+++++..++ +...-+...
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~-~~~~~a~~~~~~~n~~~~~~~~~-------------- 146 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVR-TIREEATSVRQDTNAGGYLVTTA-------------- 146 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCcccee-EEeeeeecceeccCCceEEEecC--------------
Confidence 33211 1121111123344444444443222 33 2344566665552 222223222
Q ss_pred CCeEEEcCEEEEcCCCCCC
Q 018188 226 DPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 226 ~~~~i~A~~VIlAtGg~s~ 244 (359)
++....||.+|+|||+.-+
T Consensus 147 ~g~~~~ad~~Vlatgh~~~ 165 (474)
T COG4529 147 DGPSEIADIIVLATGHSAP 165 (474)
T ss_pred CCCeeeeeEEEEeccCCCC
Confidence 3467899999999998654
No 311
>PRK10262 thioredoxin reductase; Provisional
Probab=97.99 E-value=6.3e-05 Score=71.71 Aligned_cols=169 Identities=17% Similarity=0.173 Sum_probs=98.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||+|..|+.+|..|++. +.+|+++++.+.+.. ..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~~~~~----------------------------------------~~ 185 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGFRA----------------------------------------EK 185 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEECCccCC----------------------------------------CH
Confidence 5899999999999999999999 999999998753210 00
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCCCchHHH
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK 251 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~~~~g~~ 251 (359)
.+...+.+.+ ++.|+++++++.++++..+++++.++..... . ..++..++.+|.||+|+|......
T Consensus 186 ~~~~~~~~~l-~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~------~--~~~~~~~i~~D~vv~a~G~~p~~~----- 251 (321)
T PRK10262 186 ILIKRLMDKV-ENGNIILHTNRTLEEVTGDQMGVTGVRLRDT------Q--NSDNIESLDVAGLFVAIGHSPNTA----- 251 (321)
T ss_pred HHHHHHHhhc-cCCCeEEEeCCEEEEEEcCCccEEEEEEEEc------C--CCCeEEEEECCEEEEEeCCccChh-----
Confidence 1123333333 4789999999999999765555666655310 0 011235799999999999654321
Q ss_pred HHH-hcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCccceEEEehHHHHHHHHHHhCC
Q 018188 252 RLK-SIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 328 (359)
Q Consensus 252 ~~~-~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~ 328 (359)
.+. .+.. . . ..+.++ +.+.....+.-.||+|..|+.+... ....-.-+-.|..++.-+.+.|..
T Consensus 252 l~~~~l~~-~--~--g~i~vd--~~~~~~~~~t~~~~VyA~GD~~~~~------~~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 252 IFEGQLEL-E--N--GYIKVQ--SGIHGNATQTSIPGVFAAGDVMDHI------YRQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred Hhhccccc-c--C--CEEEEC--CCCcccccccCCCCEEECeeccCCC------cceEEEEehhHHHHHHHHHHHHHh
Confidence 111 1111 0 0 111121 1100001123458999988654211 111111235677888777777754
No 312
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.98 E-value=2.5e-05 Score=83.71 Aligned_cols=107 Identities=7% Similarity=0.087 Sum_probs=66.0
Q ss_pred ccEEEECCChHHHHHHHHhhcC---CCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEe
Q 018188 92 TDVIVVGAGSAGLSCAYEISKN---PSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIK 168 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~---~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~ 168 (359)
.+|||||+|++|+.+|..|.+. ++.+|+||++.+.+.-.. ..+. .++. +.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r---------~~L~----~~~~--~~------------ 56 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDR---------VHLS----SYFS--HH------------ 56 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccC---------Ccch----HhHc--CC------------
Confidence 3799999999999999998653 258999999987653110 0000 0000 00
Q ss_pred chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 169 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 169 ~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
...++.......+ ++.|++++.+++|+.+..+... |.+. +..++.+|++|+|||...
T Consensus 57 ~~~~l~~~~~~~~-~~~gI~~~~g~~V~~Id~~~~~---V~~~--------------~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 57 TAEELSLVREGFY-EKHGIKVLVGERAITINRQEKV---IHSS--------------AGRTVFYDKLIMATGSYP 113 (847)
T ss_pred CHHHccCCCHHHH-HhCCCEEEcCCEEEEEeCCCcE---EEEC--------------CCcEEECCEEEECCCCCc
Confidence 0001111111222 3679999999999888654432 2222 235799999999999764
No 313
>PRK14727 putative mercuric reductase; Provisional
Probab=97.98 E-value=8.7e-05 Score=74.92 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=68.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||+|..|+..|..|++. |.+|+|+++..... .+ ..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~l~----------------------------~~-----------d~ 228 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARL-GSRVTILARSTLLF----------------------------RE-----------DP 228 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCCCCC----------------------------cc-----------hH
Confidence 4799999999999999999998 99999998753210 00 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++...+.+.+ ++.|++++++++++++..+++.+. +... ..++.+|.||+|+|....
T Consensus 229 ~~~~~l~~~L-~~~GV~i~~~~~V~~i~~~~~~~~-v~~~---------------~g~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 229 LLGETLTACF-EKEGIEVLNNTQASLVEHDDNGFV-LTTG---------------HGELRAEKLLISTGRHAN 284 (479)
T ss_pred HHHHHHHHHH-HhCCCEEEcCcEEEEEEEeCCEEE-EEEc---------------CCeEEeCEEEEccCCCCC
Confidence 2233444444 478999999999999976655432 2221 245899999999996653
No 314
>PRK07846 mycothione reductase; Reviewed
Probab=97.98 E-value=6.4e-05 Score=75.30 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=68.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
.+++|||+|+.|+.+|..|++. |.+|+|+|+.+.+.. .+ ..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~ll~---------------------------~~-----------d~ 207 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRLLR---------------------------HL-----------DD 207 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcccc---------------------------cc-----------CH
Confidence 5899999999999999999998 999999999865410 00 01
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++.+. +.++. +.+++++++++++++..+++.+. +... +..++.+|.||+|+|...
T Consensus 208 ~~~~~-l~~l~-~~~v~i~~~~~v~~i~~~~~~v~-v~~~--------------~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 208 DISER-FTELA-SKRWDVRLGRNVVGVSQDGSGVT-LRLD--------------DGSTVEADVLLVATGRVP 262 (451)
T ss_pred HHHHH-HHHHH-hcCeEEEeCCEEEEEEEcCCEEE-EEEC--------------CCcEeecCEEEEEECCcc
Confidence 11222 23333 45799999999999976655432 3221 235799999999999655
No 315
>PLN02568 polyamine oxidase
Probab=97.97 E-value=1.7e-05 Score=81.08 Aligned_cols=40 Identities=28% Similarity=0.558 Sum_probs=36.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCC-----CeEEEEeeccCCCCCc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPS-----IRVAIIEQSVSPGGGA 131 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G-----~~V~vlEk~~~~GG~~ 131 (359)
..||+|||||++||++|+.|++. | .+|+|+|++..+||..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcCCeE
Confidence 47999999999999999999987 6 8999999999998864
No 316
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.97 E-value=0.0001 Score=75.07 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=50.4
Q ss_pred echHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 168 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 168 ~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.++..++..+...+. +.|++++++++|+++..+++++.+|.+.+. .+++..+|+|+.||+|+|.++
T Consensus 125 vdp~~l~~al~~~A~-~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~---------~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 125 VDPFRLVAANVLDAQ-EHGARIFTYTKVTGLIREGGRVTGVKVEDH---------KTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred ECHHHHHHHHHHHHH-HcCCEEEcCcEEEEEEEECCEEEEEEEEEc---------CCCcEEEEEcCEEEECCCcch
Confidence 345667777777765 789999999999999988888888876321 112345799999999999775
No 317
>PRK14694 putative mercuric reductase; Provisional
Probab=97.96 E-value=0.0001 Score=74.17 Aligned_cols=96 Identities=17% Similarity=0.256 Sum_probs=68.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||+|+.|+..|..|++. |.+|+++++...+.. + ..
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~~l~~----------------------------~-----------~~ 218 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARL-GSRVTVLARSRVLSQ----------------------------E-----------DP 218 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEECCCCCCC----------------------------C-----------CH
Confidence 4899999999999999999999 999999987432100 0 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++...+.+.+ ++.|+++++++.+.++..+++.+. +... ..++.+|.||+|+|..+.
T Consensus 219 ~~~~~l~~~l-~~~GI~v~~~~~v~~i~~~~~~~~-v~~~---------------~~~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 219 AVGEAIEAAF-RREGIEVLKQTQASEVDYNGREFI-LETN---------------AGTLRAEQLLVATGRTPN 274 (468)
T ss_pred HHHHHHHHHH-HhCCCEEEeCCEEEEEEEcCCEEE-EEEC---------------CCEEEeCEEEEccCCCCC
Confidence 2233444444 478999999999999876554332 3221 246999999999997654
No 318
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.95 E-value=9e-06 Score=81.38 Aligned_cols=41 Identities=29% Similarity=0.577 Sum_probs=36.9
Q ss_pred ccEEEECCChHHHHHHHHhhcCC---CCeEEEEeeccCCCCCcc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNP---SIRVAIIEQSVSPGGGAW 132 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~---G~~V~vlEk~~~~GG~~~ 132 (359)
.||+|||||++||++|+.|+++. |.+|+|+|+++.+||.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 58999999999999999999862 799999999999998753
No 319
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.94 E-value=0.00012 Score=73.74 Aligned_cols=100 Identities=11% Similarity=0.088 Sum_probs=69.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-+|+|||+|+.|+.+|..+++. |.+|+|||+.+.+.. .+ ..
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~il~---------------------------~~-----------d~ 215 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQVIP---------------------------AA-----------DK 215 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCCC---------------------------cC-----------CH
Confidence 4899999999999999999999 999999999865410 00 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++...+.+.+. +. ++++++++|..+..+++.+. +...+ . .++..++.+|.||+|+|..+
T Consensus 216 ~~~~~~~~~l~-~~-v~i~~~~~v~~i~~~~~~~~-v~~~~------~----~~~~~~i~~D~vi~a~G~~p 274 (471)
T PRK06467 216 DIVKVFTKRIK-KQ-FNIMLETKVTAVEAKEDGIY-VTMEG------K----KAPAEPQRYDAVLVAVGRVP 274 (471)
T ss_pred HHHHHHHHHHh-hc-eEEEcCCEEEEEEEcCCEEE-EEEEe------C----CCcceEEEeCEEEEeecccc
Confidence 22334444443 45 99999999999876655443 32211 0 01235799999999999654
No 320
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.94 E-value=2.6e-05 Score=83.30 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=65.3
Q ss_pred EEEECCChHHHHHHHHhhcC--CCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 94 VIVVGAGSAGLSCAYEISKN--PSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 94 VvIIGgG~aGl~aA~~La~~--~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
|||||+|++|+.+|..|.+. ++.+|+|||+.+.++-... . +. .++. |. . ...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~---~-L~---------~~l~--g~-~----------~~~ 54 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRI---L-LS---------SVLQ--GE-A----------DLD 54 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccc---c-cc---------HHHC--CC-C----------CHH
Confidence 68999999999999988764 2679999999887531100 0 00 0000 00 0 000
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++.....+.+ ++.|++++.+++|+.+..+...| .+. +..++.+|.||+|||...
T Consensus 55 ~l~~~~~~~~-~~~gv~~~~g~~V~~Id~~~k~V---~~~--------------~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 55 DITLNSKDWY-EKHGITLYTGETVIQIDTDQKQV---ITD--------------AGRTLSYDKLILATGSYP 108 (785)
T ss_pred HccCCCHHHH-HHCCCEEEcCCeEEEEECCCCEE---EEC--------------CCcEeeCCEEEECCCCCc
Confidence 0000111222 35799999999999987655433 232 235799999999999754
No 321
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.94 E-value=0.0001 Score=74.49 Aligned_cols=99 Identities=10% Similarity=0.153 Sum_probs=68.6
Q ss_pred ccEEEECCChHHHHHHHHh---hcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEe
Q 018188 92 TDVIVVGAGSAGLSCAYEI---SKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIK 168 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~L---a~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~ 168 (359)
-.|+|||||..|+..|..+ .+. |.+|+|+|+.+.+.. .+
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~-G~~Vtli~~~~~il~---------------------------~~---------- 229 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPR-GGKVTLCYRNNMILR---------------------------GF---------- 229 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccC-CCeEEEEecCCcccc---------------------------cc----------
Confidence 4799999999999999654 345 899999998865410 01
Q ss_pred chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 169 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 169 ~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
..++.+.+.+.+ ++.|+++++++.+.++..+++....+... +..++.+|.||+|+|....
T Consensus 230 -d~~~~~~l~~~L-~~~GI~i~~~~~v~~i~~~~~~~~~v~~~--------------~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 230 -DSTLRKELTKQL-RANGINIMTNENPAKVTLNADGSKHVTFE--------------SGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred -CHHHHHHHHHHH-HHcCCEEEcCCEEEEEEEcCCceEEEEEc--------------CCCEEEcCEEEEeeCCCcC
Confidence 122234444444 46899999999999997654433333332 1357999999999996653
No 322
>PRK13748 putative mercuric reductase; Provisional
Probab=97.92 E-value=9.7e-05 Score=75.98 Aligned_cols=96 Identities=13% Similarity=0.183 Sum_probs=68.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||+|..|+.+|..|++. |.+|+|+++...+. .+ ..
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l~----------------------------~~-----------d~ 310 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARL-GSKVTILARSTLFF----------------------------RE-----------DP 310 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCEEEEEecCcccc----------------------------cc-----------CH
Confidence 4799999999999999999999 99999999753210 00 01
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++...+.+.+ ++.|+++++++.+.++..+++.+. +... ..++.+|.||+|+|....
T Consensus 311 ~~~~~l~~~l-~~~gI~i~~~~~v~~i~~~~~~~~-v~~~---------------~~~i~~D~vi~a~G~~pn 366 (561)
T PRK13748 311 AIGEAVTAAF-RAEGIEVLEHTQASQVAHVDGEFV-LTTG---------------HGELRADKLLVATGRAPN 366 (561)
T ss_pred HHHHHHHHHH-HHCCCEEEcCCEEEEEEecCCEEE-EEec---------------CCeEEeCEEEEccCCCcC
Confidence 2233334444 478999999999999876655432 2221 136999999999996543
No 323
>PTZ00058 glutathione reductase; Provisional
Probab=97.89 E-value=0.00012 Score=75.28 Aligned_cols=98 Identities=7% Similarity=0.121 Sum_probs=69.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||+|..|+..|..+++. |.+|+|+|+.+.+.. .+ ..
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~il~---------------------------~~-----------d~ 278 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRL-GAESYIFARGNRLLR---------------------------KF-----------DE 278 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCcEEEEEecccccc---------------------------cC-----------CH
Confidence 5799999999999999999999 999999999864310 01 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCC-EEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++.+.+.+.+ ++.|++++.++.+.++..+++ .+. +...+ ...++.+|.||+|+|...
T Consensus 279 ~i~~~l~~~L-~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~-------------~~~~i~aD~VlvA~Gr~P 336 (561)
T PTZ00058 279 TIINELENDM-KKNNINIITHANVEEIEKVKEKNLT-IYLSD-------------GRKYEHFDYVIYCVGRSP 336 (561)
T ss_pred HHHHHHHHHH-HHCCCEEEeCCEEEEEEecCCCcEE-EEECC-------------CCEEEECCEEEECcCCCC
Confidence 2233444444 467999999999999875432 232 22110 135799999999999654
No 324
>PLN02676 polyamine oxidase
Probab=97.87 E-value=1.6e-05 Score=80.40 Aligned_cols=44 Identities=34% Similarity=0.515 Sum_probs=38.6
Q ss_pred cccCcccEEEECCChHHHHHHHHhhcCCCC-eEEEEeeccCCCCCc
Q 018188 87 VTYADTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSVSPGGGA 131 (359)
Q Consensus 87 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~~~GG~~ 131 (359)
.....+||+|||||++||+||+.|+++ |. +|+|+|++..+||..
T Consensus 22 ~~~~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 22 DAKPSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGGRM 66 (487)
T ss_pred cccCCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCCcc
Confidence 334468999999999999999999999 98 599999999998754
No 325
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.85 E-value=0.00016 Score=72.50 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=70.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||||..|+-+|..|.+. |.+|+++++....- ++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~~~~---------------------------~~~------------- 311 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRL-GAEVHCLYRRTRED---------------------------MTA------------- 311 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCEEEEEeecCccc---------------------------CCC-------------
Confidence 4799999999999999999999 99999999874310 000
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEe-CCEEEEEEEceeeee-ccCCCC-----CCCCCeEEEcCEEEEcCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVS-MNHDTQ-----SCMDPNVMEAKIVVSSCGHD 242 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~-~~~v~gv~~~~~~~~-~~~~~~-----~~g~~~~i~A~~VIlAtGg~ 242 (359)
.....+.+ ++.|+++++++.++++..+ ++++.++.....-.. .+.++. ..++..++.+|.||+|+|-.
T Consensus 312 --~~~~~~~l-~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~ 386 (449)
T TIGR01316 312 --RVEEIAHA-EEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNG 386 (449)
T ss_pred --CHHHHHHH-HhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCC
Confidence 01112333 3679999999999998764 467777765310000 000000 01223579999999999954
No 326
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.85 E-value=0.00017 Score=72.21 Aligned_cols=96 Identities=16% Similarity=0.220 Sum_probs=67.9
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
..++|||+|+.|+..|..|++. |.+|+++|+.+.+.. .++ .
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~ll~---------------------------~~d-----------~ 210 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTKLLR---------------------------HLD-----------E 210 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcccc---------------------------ccC-----------H
Confidence 4799999999999999999999 999999998764310 000 1
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++...+ .++. +.+++++++++|.++..+++.+. +... +..++.+|.||+|+|...
T Consensus 211 ~~~~~l-~~~~-~~gI~i~~~~~V~~i~~~~~~v~-v~~~--------------~g~~i~~D~vl~a~G~~p 265 (452)
T TIGR03452 211 DISDRF-TEIA-KKKWDIRLGRNVTAVEQDGDGVT-LTLD--------------DGSTVTADVLLVATGRVP 265 (452)
T ss_pred HHHHHH-HHHH-hcCCEEEeCCEEEEEEEcCCeEE-EEEc--------------CCCEEEcCEEEEeeccCc
Confidence 112222 2333 35899999999999976655432 3221 124799999999999654
No 327
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=1.5e-05 Score=78.87 Aligned_cols=38 Identities=37% Similarity=0.588 Sum_probs=36.4
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
.|+|+|||.|||+||+.|+++ |.+|+|+|+++.+||.+
T Consensus 2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLGGKV 39 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccCcee
Confidence 599999999999999999999 99999999999999875
No 328
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.81 E-value=0.00029 Score=70.62 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=68.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||+|..|+..|..|++. |.+|+++|+.+.+.. .+ ..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~---------------------------~~-----------d~ 210 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRL-GVKVTVFERGDRILP---------------------------LE-----------DP 210 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcCc---------------------------ch-----------hH
Confidence 5899999999999999999999 999999999865411 00 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCC-EEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++...+.+.+ ++. +++++++++.++..+++ .+. +... +++..++.+|.||+|+|...
T Consensus 211 ~~~~~~~~~l-~~~-I~i~~~~~v~~i~~~~~~~v~-~~~~------------~~~~~~i~~D~vi~a~G~~p 268 (460)
T PRK06292 211 EVSKQAQKIL-SKE-FKIKLGAKVTSVEKSGDEKVE-ELEK------------GGKTETIEADYVLVATGRRP 268 (460)
T ss_pred HHHHHHHHHH-hhc-cEEEcCCEEEEEEEcCCceEE-EEEc------------CCceEEEEeCEEEEccCCcc
Confidence 2233444444 456 99999999999976543 222 1111 11346799999999999654
No 329
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.80 E-value=0.00019 Score=72.84 Aligned_cols=96 Identities=14% Similarity=0.206 Sum_probs=67.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-+++|||+|..|+..|..|++. |.+|+|+++..... .+ ..
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l~----------------------------~~-----------d~ 222 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNEL-GFDVTVAVRSIPLR----------------------------GF-----------DR 222 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCcccc----------------------------cC-----------CH
Confidence 3799999999999999999999 99999998742110 01 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++.+.+.+.+ ++.|++++.++.+.++...++.+. +... +..++.+|.||+|+|..+
T Consensus 223 ~~~~~l~~~l-~~~GV~i~~~~~v~~v~~~~~~~~-v~~~--------------~g~~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 223 QCSEKVVEYM-KEQGTLFLEGVVPINIEKMDDKIK-VLFS--------------DGTTELFDTVLYATGRKP 278 (499)
T ss_pred HHHHHHHHHH-HHcCCEEEcCCeEEEEEEcCCeEE-EEEC--------------CCCEEEcCEEEEeeCCCC
Confidence 1233444444 467999999999988876544332 3332 125689999999999654
No 330
>PLN02546 glutathione reductase
Probab=97.77 E-value=0.00023 Score=73.06 Aligned_cols=99 Identities=12% Similarity=0.119 Sum_probs=67.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-+|+|||||..|+..|..|++. |.+|+|+|+.+.+.. .+ ..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~il~---------------------------~~-----------d~ 293 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKKVLR---------------------------GF-----------DE 293 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEecccccc---------------------------cc-----------CH
Confidence 4799999999999999999998 999999998765310 01 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++...+.+.+ ++.|++++.++.+.++..+++....+... +.....+|.||+|+|....
T Consensus 294 ~~~~~l~~~L-~~~GV~i~~~~~v~~i~~~~~g~v~v~~~--------------~g~~~~~D~Viva~G~~Pn 351 (558)
T PLN02546 294 EVRDFVAEQM-SLRGIEFHTEESPQAIIKSADGSLSLKTN--------------KGTVEGFSHVMFATGRKPN 351 (558)
T ss_pred HHHHHHHHHH-HHCCcEEEeCCEEEEEEEcCCCEEEEEEC--------------CeEEEecCEEEEeeccccC
Confidence 1223333444 47899999999999987643322223221 1233458999999996553
No 331
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.77 E-value=5.5e-05 Score=76.27 Aligned_cols=38 Identities=42% Similarity=0.519 Sum_probs=35.4
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
+|+|||||++|+++|+.|++. |.+|+|+|+...+||.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~-G~~v~v~E~~~~~GG~~ 38 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA-GHEVDIYESRSFIGGKV 38 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCCcee
Confidence 489999999999999999999 99999999999998854
No 332
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.76 E-value=0.0003 Score=71.12 Aligned_cols=99 Identities=18% Similarity=0.169 Sum_probs=67.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.++|||||..|+.+|..|++. |.+|+|+++. .+.. .+ ..
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~-~~l~---------------------------~~-----------d~ 220 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGI-GLDVTVMVRS-ILLR---------------------------GF-----------DQ 220 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHh-CCcEEEEEec-cccc---------------------------cc-----------CH
Confidence 3699999999999999999999 9999999874 2200 01 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++...+.+.+ ++.|+++++++.+.++...++.+. +...+ +. ...++.+|.||+|+|...
T Consensus 221 ~~~~~l~~~L-~~~gV~i~~~~~v~~v~~~~~~~~-v~~~~-------~~----~~~~i~~D~vl~a~G~~p 279 (484)
T TIGR01438 221 DCANKVGEHM-EEHGVKFKRQFVPIKVEQIEAKVK-VTFTD-------ST----NGIEEEYDTVLLAIGRDA 279 (484)
T ss_pred HHHHHHHHHH-HHcCCEEEeCceEEEEEEcCCeEE-EEEec-------CC----cceEEEeCEEEEEecCCc
Confidence 2233444444 467999999999888876555432 32211 00 124799999999999654
No 333
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.75 E-value=3.4e-05 Score=76.92 Aligned_cols=37 Identities=38% Similarity=0.637 Sum_probs=35.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG 129 (359)
..|.|||+||+|+.+|..|++. |..|+++|+.+.+||
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~GG 160 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDGG 160 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCce
Confidence 6899999999999999999999 999999999999887
No 334
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.74 E-value=0.00032 Score=73.26 Aligned_cols=108 Identities=15% Similarity=0.022 Sum_probs=69.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||||..|+..|..+++. |.+|+|||+.+.+.. .+ ..
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ll~---------------------------~~-----------d~ 353 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQLLP---------------------------LL-----------DA 353 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCcccc---------------------------cC-----------CH
Confidence 4799999999999999999999 999999999875411 00 11
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCE--EEEEEEceeeeeccCCCCC-----CCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR--VGGVVTNWALVSMNHDTQS-----CMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~--v~gv~~~~~~~~~~~~~~~-----~g~~~~i~A~~VIlAtGg~s 243 (359)
++...+.+.+.++.|++++.++.|.++..+++. +. +.... ...+... -.+..++.+|.||+|+|...
T Consensus 354 eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~-v~~~~----~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~P 427 (659)
T PTZ00153 354 DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVI-IGHSE----RQTGESDGPKKNMNDIKETYVDSCLVATGRKP 427 (659)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEE-EEEec----cccccccccccccccceEEEcCEEEEEECccc
Confidence 122333333334689999999999999765431 22 22110 0000000 00124799999999999654
No 335
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.73 E-value=0.0002 Score=71.15 Aligned_cols=161 Identities=20% Similarity=0.263 Sum_probs=93.6
Q ss_pred cEEEECCChHHHHHHHHhhcC-------------CCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcce
Q 018188 93 DVIVVGAGSAGLSCAYEISKN-------------PSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYD 159 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~-------------~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~ 159 (359)
.|+|||||+.|+..|..|++. ++.+|+|+|+.+.+.. .+
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~---------------------------~~- 226 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG---------------------------SF- 226 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc---------------------------cC-
Confidence 799999999999999988751 2789999998865411 00
Q ss_pred ecCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcC
Q 018188 160 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSC 239 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAt 239 (359)
...+.+.+.+.+ ++.||+++.+++|.++. ++. +... ++.++.+|.||.|+
T Consensus 227 ----------~~~~~~~~~~~L-~~~gV~v~~~~~v~~v~--~~~---v~~~--------------~g~~i~~d~vi~~~ 276 (424)
T PTZ00318 227 ----------DQALRKYGQRRL-RRLGVDIRTKTAVKEVL--DKE---VVLK--------------DGEVIPTGLVVWST 276 (424)
T ss_pred ----------CHHHHHHHHHHH-HHCCCEEEeCCeEEEEe--CCE---EEEC--------------CCCEEEccEEEEcc
Confidence 011223333344 57899999999998874 333 3332 23579999999999
Q ss_pred CCCCCCCchHHHHHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCccc-eEEEehHHH
Q 018188 240 GHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFG-AMMISGQKA 318 (359)
Q Consensus 240 Gg~s~~~~~g~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g-~~l~sG~~~ 318 (359)
|.... . .+..+++. ......+.++ +. +...-.|++|..|+.+.... ...+..+ ...-.|+.+
T Consensus 277 G~~~~---~---~~~~~~l~--~~~~G~I~Vd--~~----l~~~~~~~IfAiGD~a~~~~---~~~~~~~~~A~~qg~~~ 339 (424)
T PTZ00318 277 GVGPG---P---LTKQLKVD--KTSRGRISVD--DH----LRVKPIPNVFALGDCAANEE---RPLPTLAQVASQQGVYL 339 (424)
T ss_pred CCCCc---c---hhhhcCCc--ccCCCcEEeC--CC----cccCCCCCEEEEeccccCCC---CCCCCchHHHHHHHHHH
Confidence 95442 1 22223321 0001111122 11 10012489999987664421 1112221 123567888
Q ss_pred HHHHHHHhCC
Q 018188 319 AHLALKALGQ 328 (359)
Q Consensus 319 ~~l~l~~~~~ 328 (359)
++.+...+..
T Consensus 340 A~ni~~~l~g 349 (424)
T PTZ00318 340 AKEFNNELKG 349 (424)
T ss_pred HHHHHHHhcC
Confidence 8888888743
No 336
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.73 E-value=8.1e-05 Score=70.92 Aligned_cols=38 Identities=37% Similarity=0.559 Sum_probs=34.2
Q ss_pred ccEEEECCChHHHHHHHHhhc-CCCCeEEEEeeccCCCC
Q 018188 92 TDVIVVGAGSAGLSCAYEISK-NPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~-~~G~~V~vlEk~~~~GG 129 (359)
..|+|||+||||+.+|..|.+ .++++|.|+||.+.|.|
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 589999999999999999887 35899999999998865
No 337
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.71 E-value=0.00022 Score=69.93 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=75.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
.--|++||+|..|+.+|..|... +.+|+++++.+.+- . .+ + .
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~-~~~VT~V~~e~~~~----------~---------~l---f---------------~ 254 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSK-AKSVTVVFPEPWLL----------P---------RL---F---------------G 254 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhc-CceEEEEccCccch----------h---------hh---h---------------h
Confidence 45799999999999999999988 99999999986540 0 00 0 0
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeC-CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.. +...+..+.++.|++++.++.+.++..+. +++.-|.+. +..++.||.||+.+|...
T Consensus 255 ~~-i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~--------------dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 255 PS-IGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLK--------------DGKTLEADLVVVGIGIKP 313 (478)
T ss_pred HH-HHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEec--------------cCCEeccCeEEEeecccc
Confidence 11 22234444568899999999999998754 788877775 357899999999999654
No 338
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.71 E-value=0.00037 Score=68.10 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 169 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 169 ~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
++..++..|.+.+. + |++++++++|.++..+++.+ .|.+. +...+.|+.||+|+|.++.
T Consensus 133 dp~~~~~~l~~~~~-~-G~~i~~~~~V~~i~~~~~~~-~v~t~--------------~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 133 SPPQLCRALLAHAG-I-RLTLHFNTEITSLERDGEGW-QLLDA--------------NGEVIAASVVVLANGAQAG 191 (381)
T ss_pred ChHHHHHHHHhccC-C-CcEEEeCCEEEEEEEcCCeE-EEEeC--------------CCCEEEcCEEEEcCCcccc
Confidence 44567777776664 5 99999999999998776653 34442 1245899999999998764
No 339
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.69 E-value=9.6e-05 Score=78.25 Aligned_cols=40 Identities=38% Similarity=0.650 Sum_probs=37.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
..+|+|||||++|+.+|+.|++. |.+|+|+|++..+||..
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCCCcc
Confidence 47999999999999999999999 99999999999998864
No 340
>PRK12831 putative oxidoreductase; Provisional
Probab=97.67 E-value=0.00041 Score=69.77 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=70.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||||..|+-+|..|.+. |.+|+|+++..... + + . .
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~~~~-------------------------m--~--a--------~-- 321 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRL-GAEVHIVYRRSEEE-------------------------L--P--A--------R-- 321 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCEEEEEeecCccc-------------------------C--C--C--------C--
Confidence 5899999999999999999999 99999999864210 0 0 0 0
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEe-CCEEEEEEEceee-eeccCCCC-----CCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWAL-VSMNHDTQ-----SCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~-~~~v~gv~~~~~~-~~~~~~~~-----~~g~~~~i~A~~VIlAtGg~s 243 (359)
... ++.+. +.|+++++++.+.++..+ ++++.++.....- ...+.++. ..++..++.+|.||+|.|-..
T Consensus 322 --~~e-~~~a~-~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p 396 (464)
T PRK12831 322 --VEE-VHHAK-EEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSP 396 (464)
T ss_pred --HHH-HHHHH-HcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCC
Confidence 111 12233 579999999999998764 5678777653110 00010000 012335799999999999543
No 341
>PLN02529 lysine-specific histone demethylase 1
Probab=97.64 E-value=6e-05 Score=79.23 Aligned_cols=41 Identities=37% Similarity=0.635 Sum_probs=37.5
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
...||+|||||++|++||..|++. |.+|+|+|++..+||..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPGGRV 199 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCcCce
Confidence 357999999999999999999999 99999999999888754
No 342
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.62 E-value=0.0005 Score=68.99 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=69.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKH 169 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 169 (359)
.-.|+|||+|..|+.+|..|.+. |. +|+++++..... ++. .
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~~~~---------------------------~~~----------~ 314 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRGREE---------------------------MPA----------S 314 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecCccc---------------------------CCC----------C
Confidence 35899999999999999999988 87 899999864210 000 0
Q ss_pred hHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceee-eeccCCC----CCCCCCeEEEcCEEEEcCCCCC
Q 018188 170 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWAL-VSMNHDT----QSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 170 ~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~-~~~~~~~----~~~g~~~~i~A~~VIlAtGg~s 243 (359)
....+.+ ++.|+++++++.+.++..+++.+.+|...... ...+.++ ...++..++.+|.||+|.|...
T Consensus 315 -----~~~~~~~-~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p 387 (457)
T PRK11749 315 -----EEEVEHA-KEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTP 387 (457)
T ss_pred -----HHHHHHH-HHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCC
Confidence 0112333 36799999999999987666555555442100 0000000 0012346899999999999554
No 343
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.61 E-value=0.0021 Score=63.92 Aligned_cols=40 Identities=30% Similarity=0.540 Sum_probs=35.3
Q ss_pred ccEEEECCChHHHHHHHHhhcC---CCCeEEEEeeccCCCCCc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKN---PSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~---~G~~V~vlEk~~~~GG~~ 131 (359)
.++=|||+|+|+|++|..|-+. ||-+|.|+|+...+||+.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 4678999999999999999873 688999999999988765
No 344
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00018 Score=76.43 Aligned_cols=56 Identities=27% Similarity=0.481 Sum_probs=43.3
Q ss_pred hhhHHHHHhhhhccccc--CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC
Q 018188 73 IVSREMTRRYMTDMVTY--ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 73 ~~~~~~~~~~~~~~~~~--~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG 129 (359)
+..++..+.||...... .-..|.|||+||+||+||-+|-+. |..|+|.||...+||
T Consensus 1765 iid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1765 IIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGG 1822 (2142)
T ss_pred HHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCc
Confidence 33344445555443322 236899999999999999999999 999999999999987
No 345
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.55 E-value=0.00064 Score=68.52 Aligned_cols=183 Identities=18% Similarity=0.193 Sum_probs=97.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
-.|+|||+|..|+-+|..+.+. |. +|++++....+.... +.. ..+.. ..
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~-ga~~Vt~~~~~~~~~~~~--------------------------~~~-~~~~~--~~ 331 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQ-GAKSVTQRDIMPMPPSRR--------------------------NKN-NPWPY--WP 331 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCeEEEccccCCCcccc--------------------------ccc-cCCcc--cc
Confidence 4799999999999999888887 65 788777654331100 000 00000 00
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCC-CCCCCCCeEEEcCEEEEcCCCCCCCCchH
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD-TQSCMDPNVMEAKIVVSSCGHDGPFGATG 249 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~-~~~~g~~~~i~A~~VIlAtGg~s~~~~~g 249 (359)
.....+.+ ++.|+++++++.++++..+++++.+|..... ...+.+ ....++..++.+|.||+|+|.....
T Consensus 332 ---~~~~~~~~-~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~-~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~---- 402 (471)
T PRK12810 332 ---MKLEVSNA-HEEGVEREFNVQTKEFEGENGKVTGVKVVRT-ELGEGDFEPVEGSEFVLPADLVLLAMGFTGPE---- 402 (471)
T ss_pred ---hHHHHHHH-HHcCCeEEeccCceEEEccCCEEEEEEEEEE-EecCCCccccCCceEEEECCEEEECcCcCCCc----
Confidence 00112333 3579999999999999766788888765311 000000 0011234689999999999954421
Q ss_pred HHHHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCccceEEEehHHHHHHHHHHhCC
Q 018188 250 VKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 328 (359)
Q Consensus 250 ~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~ 328 (359)
...+...|+.....+ .+..+ ++. .+.-.||+|..|..+. + .. ..-..+..|..++..+.+.|..
T Consensus 403 ~~l~~~~gl~~~~~g--~i~vd--~~~----~~Ts~~gVfa~GD~~~---g-~~---~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 403 AGLLAQFGVELDERG--RVAAP--DNA----YQTSNPKVFAAGDMRR---G-QS---LVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred hhhccccCcccCCCC--CEEeC--CCc----ccCCCCCEEEccccCC---C-ch---hHHHHHHHHHHHHHHHHHHHhc
Confidence 112233332100001 11111 001 1123489998876542 1 10 1111225677888888877753
No 346
>PLN02487 zeta-carotene desaturase
Probab=97.55 E-value=0.00018 Score=73.86 Aligned_cols=39 Identities=36% Similarity=0.474 Sum_probs=36.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
.+|+|||+|++|+++|+.|++. |.+|+|+|+.+.+||..
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIGGKV 114 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCCCce
Confidence 5899999999999999999999 99999999999998744
No 347
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.53 E-value=0.00089 Score=64.64 Aligned_cols=133 Identities=19% Similarity=0.228 Sum_probs=80.0
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcc----------------hhHHHHHHH
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVR----------------KPAQRFLDE 153 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~----------------~~~~~~l~~ 153 (359)
..+|+|.||-||.-|+.|+.|.+..+.+++.+||.+.. .|..|.++....++ -...++|.+
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F---~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF---SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC---CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence 35899999999999999999998745889999999754 35555444321111 124455555
Q ss_pred cCCcceec--CCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeC-CEEEE--EEEceeeeeccCCCCCCCCCe
Q 018188 154 LGVEYDEQ--DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGG--VVTNWALVSMNHDTQSCMDPN 228 (359)
Q Consensus 154 ~G~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~-~~v~g--v~~~~~~~~~~~~~~~~g~~~ 228 (359)
.|--|... +.+ .....+| +...+++..+. -.++++++|++|..-+ +.... +++. +..
T Consensus 81 h~RLy~Fl~~e~f--~i~R~Ey-~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~--------------~~~ 142 (436)
T COG3486 81 HGRLYEFLNYETF--HIPRREY-NDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTA--------------NGT 142 (436)
T ss_pred cchHhhhhhhhcc--cccHHHH-HHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcC--------------CCc
Confidence 55222111 111 1122333 33345555443 6788999999773322 22222 2221 235
Q ss_pred EEEcCEEEEcCCCCC
Q 018188 229 VMEAKIVVSSCGHDG 243 (359)
Q Consensus 229 ~i~A~~VIlAtGg~s 243 (359)
.++|+.||+.+|...
T Consensus 143 ~y~ar~lVlg~G~~P 157 (436)
T COG3486 143 VYRARNLVLGVGTQP 157 (436)
T ss_pred EEEeeeEEEccCCCc
Confidence 899999999999654
No 348
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.52 E-value=0.0003 Score=68.45 Aligned_cols=31 Identities=35% Similarity=0.505 Sum_probs=28.3
Q ss_pred hHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc
Q 018188 101 SAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW 132 (359)
Q Consensus 101 ~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~ 132 (359)
++||+||+.|+++ |.+|+|+|+...+||.+.
T Consensus 1 iaGL~aA~~L~~~-G~~v~vlEa~~r~GGr~~ 31 (450)
T PF01593_consen 1 IAGLAAAYYLAKA-GYDVTVLEASDRVGGRIR 31 (450)
T ss_dssp HHHHHHHHHHHHT-TTEEEEEESSSSSBTTS-
T ss_pred ChHHHHHHHHHhC-CCCEEEEEcCCCCCcceE
Confidence 5899999999999 999999999999998763
No 349
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.50 E-value=0.00032 Score=72.10 Aligned_cols=130 Identities=20% Similarity=0.332 Sum_probs=89.7
Q ss_pred cccccCCCCCC-CCcccCCCchhhhhHHHHHhhhhcccccCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCC
Q 018188 51 ISMSLTPQYDF-NSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGG 129 (359)
Q Consensus 51 ~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG 129 (359)
|...+-+|.++ ..|.++.+++...-....+. .-..+|||||.-|+.+|..|... |+.|.|++-.+.+
T Consensus 113 pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~---------~~~avVIGGGLLGlEaA~~L~~~-Gm~~~Vvh~~~~l-- 180 (793)
T COG1251 113 PFILPIPGSDLPGVFVYRTIDDVEAMLDCARN---------KKKAVVIGGGLLGLEAARGLKDL-GMEVTVVHIAPTL-- 180 (793)
T ss_pred ccccCCCCCCCCCeeEEecHHHHHHHHHHHhc---------cCCcEEEccchhhhHHHHHHHhC-CCceEEEeecchH--
Confidence 44445677664 67888887766553222121 12379999999999999999999 9999999876532
Q ss_pred CcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEE
Q 018188 130 GAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVV 209 (359)
Q Consensus 130 ~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~ 209 (359)
+.+.|+. + ...++++..++.|++++++...+.+.. ++++.++.
T Consensus 181 -----------------MerQLD~---------------~----ag~lL~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr 223 (793)
T COG1251 181 -----------------MERQLDR---------------T----AGRLLRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVR 223 (793)
T ss_pred -----------------HHHhhhh---------------H----HHHHHHHHHHhhcceeecccchhhhhc-CcceeeEe
Confidence 0111111 1 234455666688999999987777765 66777787
Q ss_pred EceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 210 TNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 210 ~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.. ++..+.|+.||.|+|-..
T Consensus 224 ~~--------------DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 224 FA--------------DGTEIPADLVVMAVGIRP 243 (793)
T ss_pred ec--------------CCCcccceeEEEeccccc
Confidence 65 347799999999999543
No 350
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.49 E-value=0.00062 Score=65.87 Aligned_cols=105 Identities=25% Similarity=0.250 Sum_probs=67.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCe-EEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIR-VAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
-.|+|||+|..|+.+|..|.+. |.+ |+|+++...... + .
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~~~~~---------------------------~------------~ 212 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRTINEA---------------------------P------------A 212 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecchhhC---------------------------C------------C
Confidence 4799999999999999999888 887 999997642100 0 0
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccC-CC-------CCCCCCeEEEcCEEEEcCCCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH-DT-------QSCMDPNVMEAKIVVSSCGHD 242 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~-~~-------~~~g~~~~i~A~~VIlAtGg~ 242 (359)
...+.+.+ ++.|+++++++.+.++..+ +++..+..... ..+. +. ...++..++.+|.||+|+|..
T Consensus 213 ---~~~~~~~l-~~~gi~i~~~~~v~~i~~~-~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~ 285 (352)
T PRK12770 213 ---GKYEIERL-IARGVEFLELVTPVRIIGE-GRVEGVELAKM--RLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI 285 (352)
T ss_pred ---CHHHHHHH-HHcCCEEeeccCceeeecC-CcEeEEEEEEE--EecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence 01122333 4679999999999888644 44544543210 0000 00 001234689999999999965
Q ss_pred C
Q 018188 243 G 243 (359)
Q Consensus 243 s 243 (359)
.
T Consensus 286 p 286 (352)
T PRK12770 286 P 286 (352)
T ss_pred C
Confidence 4
No 351
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.45 E-value=0.0012 Score=67.96 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=64.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.|+|||||..|+.+|..|++. |.+|+++++.+... . .
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~~~-----------------------------~-----------~- 181 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPDFT-----------------------------C-----------A- 181 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCccc-----------------------------c-----------C-
Confidence 5899999999999999999998 99999999875320 0 0
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEE--EcCE----EEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM--EAKI----VVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i--~A~~----VIlAtGg~s 243 (359)
..+.++++++.|+++++++.|.++.. ++.+..+.... .. +|...++ .+|. ||+|+|-..
T Consensus 182 ---~~~~~~~~~~~gV~i~~~~~V~~i~~-~~~v~~v~~~~------~~---~G~~~~~~~~~D~~~~~Vi~a~G~~P 246 (555)
T TIGR03143 182 ---KLIAEKVKNHPKIEVKFNTELKEATG-DDGLRYAKFVN------NV---TGEITEYKAPKDAGTFGVFVFVGYAP 246 (555)
T ss_pred ---HHHHHHHHhCCCcEEEeCCEEEEEEc-CCcEEEEEEEE------CC---CCCEEEEeccccccceEEEEEeCCCC
Confidence 11123333457999999999999864 34444433211 00 1122333 3666 999999654
No 352
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.43 E-value=0.00031 Score=68.91 Aligned_cols=102 Identities=10% Similarity=0.233 Sum_probs=63.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC--eEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceec--CCeEE
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI--RVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQ--DNYVV 166 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~--~~~~~ 166 (359)
...++|||+|++|..|+..+.+. |. +++++-+...+ +++.. ..+..
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~-g~~~ri~l~~~~~~~-----------------------------pydr~~Ls~~~~ 123 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQV-GFTERIALVKREYLL-----------------------------PYDRARLSKFLL 123 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhh-CCCcceEEEeccccC-----------------------------cccchhccccee
Confidence 46899999999999999999876 43 55665444321 11110 00000
Q ss_pred EechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCC
Q 018188 167 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGH 241 (359)
Q Consensus 167 ~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg 241 (359)
.. ...+.....+ ..++.|+++++++.|+.+...+..+. +. +.+++..+.+|+|||.
T Consensus 124 ~~-~~~~a~r~~e-~Yke~gIe~~~~t~v~~~D~~~K~l~---~~--------------~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 124 TV-GEGLAKRTPE-FYKEKGIELILGTSVVKADLASKTLV---LG--------------NGETLKYSKLIIATGS 179 (478)
T ss_pred ec-cccccccChh-hHhhcCceEEEcceeEEeeccccEEE---eC--------------CCceeecceEEEeecC
Confidence 00 0000111112 22478999999999999988776543 32 3588999999999997
No 353
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.39 E-value=0.0023 Score=70.19 Aligned_cols=156 Identities=20% Similarity=0.210 Sum_probs=95.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
-.|+|||+|+.|+..|..|++. |. .|+|+|..+..
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~-G~~vV~vv~~~~~~------------------------------------------- 353 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAA-GIAVVAIIDARADV------------------------------------------- 353 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCceEEEEccCcch-------------------------------------------
Confidence 5899999999999999999998 85 57899876432
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCCCchHH
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGV 250 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~~~~g~ 250 (359)
...+.+.+ ++.|+++++++.+..+.. ++++.+|.... . .++..++.||.|+++.|... ..
T Consensus 354 ---~~~l~~~L-~~~GV~i~~~~~v~~i~g-~~~v~~V~l~~------~----~g~~~~i~~D~V~va~G~~P-----nt 413 (985)
T TIGR01372 354 ---SPEARAEA-RELGIEVLTGHVVAATEG-GKRVSGVAVAR------N----GGAGQRLEADALAVSGGWTP-----VV 413 (985)
T ss_pred ---hHHHHHHH-HHcCCEEEcCCeEEEEec-CCcEEEEEEEe------c----CCceEEEECCEEEEcCCcCc-----hh
Confidence 11123333 467999999999988864 34565665431 0 12346899999999999543 22
Q ss_pred HHHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCccceEEEehHHHHHHHHHHhCCC
Q 018188 251 KRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQP 329 (359)
Q Consensus 251 ~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~~ 329 (359)
..+..+|... .++.....++.. .-.||+|+.|... |.. .....+..|..++..+..+++..
T Consensus 414 ~L~~~lg~~~--------~~~~~~~~~~~~--t~v~gVyaaGD~~----g~~----~~~~A~~eG~~Aa~~i~~~lg~~ 474 (985)
T TIGR01372 414 HLFSQRGGKL--------AWDAAIAAFLPG--DAVQGCILAGAAN----GLF----GLAAALADGAAAGAAAARAAGFE 474 (985)
T ss_pred HHHHhcCCCe--------eeccccCceecC--CCCCCeEEeeccC----Ccc----CHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333333210 011000000000 1158999988422 110 11223477888888888888763
No 354
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=97.37 E-value=0.00017 Score=71.73 Aligned_cols=33 Identities=36% Similarity=0.539 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
||.+|||+|.+|+.+|..|++. |.++.++-|-.
T Consensus 56 ~da~vvgaggAGlr~~~~lae~-g~~~a~itkl~ 88 (642)
T KOG2403|consen 56 YDAVVVGAGGAGLRAARGLAEL-GEKTAVITKLF 88 (642)
T ss_pred ceeEEEeccchhhhhhhhhhhc-CceEEEEeccc
Confidence 8999999999999999999999 99999998754
No 355
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.36 E-value=0.0027 Score=63.01 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
.+|||||+|.|..-+..|-.|++. |.+|+.+|+++.-||..
T Consensus 3 ~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg~~ 43 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGGEW 43 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCGGG
T ss_pred ccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCCch
Confidence 369999999999999999999999 99999999999887643
No 356
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.35 E-value=0.0038 Score=60.44 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=88.0
Q ss_pred ccEEEECCChHHHHHHHHhhc----CCC--CeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeE
Q 018188 92 TDVIVVGAGSAGLSCAYEISK----NPS--IRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYV 165 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~----~~G--~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~ 165 (359)
..|+|||+|++|+.+|..|++ . | .+|+|+. .+.+.. .+
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~-g~~~~V~li~-~~~~l~---------------------------~~------- 189 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKR-GLRGQVTLIA-GASLLP---------------------------GF------- 189 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhc-CCCceEEEEe-CCcccc---------------------------cC-------
Confidence 489999999999999999874 3 4 4798883 322100 00
Q ss_pred EEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018188 166 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPF 245 (359)
Q Consensus 166 ~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~~ 245 (359)
...+...+.+ .+++.|++++.++++.++. ++ .+.+. +..++.+|.||+|+|....
T Consensus 190 ----~~~~~~~~~~-~l~~~gV~v~~~~~v~~i~--~~---~v~~~--------------~g~~i~~D~vi~a~G~~p~- 244 (364)
T TIGR03169 190 ----PAKVRRLVLR-LLARRGIEVHEGAPVTRGP--DG---ALILA--------------DGRTLPADAILWATGARAP- 244 (364)
T ss_pred ----CHHHHHHHHH-HHHHCCCEEEeCCeeEEEc--CC---eEEeC--------------CCCEEecCEEEEccCCChh-
Confidence 0111233333 3347899999999998773 33 23332 2367999999999995542
Q ss_pred CchHHHHHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCccceEEEehHHHHHHHHHH
Q 018188 246 GATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKA 325 (359)
Q Consensus 246 ~~~g~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~ 325 (359)
..+...++. +-....+.++ +. . -..-.|++|..|+.+..... + ..+........|..+++.+...
T Consensus 245 -----~~l~~~gl~--~~~~g~i~vd--~~-l---~~~~~~~Iya~GD~~~~~~~-~-~~~~~~~A~~~g~~~a~ni~~~ 309 (364)
T TIGR03169 245 -----PWLAESGLP--LDEDGFLRVD--PT-L---QSLSHPHVFAAGDCAVITDA-P-RPKAGVYAVRQAPILAANLRAS 309 (364)
T ss_pred -----hHHHHcCCC--cCCCCeEEEC--Cc-c---ccCCCCCEEEeeeeeecCCC-C-CCCchHHHHHhHHHHHHHHHHH
Confidence 122223331 0001111122 11 1 00124899999977654321 1 1111111224567777777776
Q ss_pred hC
Q 018188 326 LG 327 (359)
Q Consensus 326 ~~ 327 (359)
+.
T Consensus 310 l~ 311 (364)
T TIGR03169 310 LR 311 (364)
T ss_pred hc
Confidence 64
No 357
>PLN03000 amine oxidase
Probab=97.35 E-value=0.00024 Score=75.49 Aligned_cols=42 Identities=31% Similarity=0.676 Sum_probs=38.5
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW 132 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~ 132 (359)
...+|+|||||++|+.+|+.|.+. |.+|+|+|++..+||..+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCCCCcc
Confidence 358999999999999999999999 999999999999998654
No 358
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.34 E-value=0.0018 Score=67.95 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=70.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
..|+|||+|..|+-+|..+.+. |. +|+++.+..... + +.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~-ga~~Vt~i~~~~~~~---~------------------------~~------------ 508 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRH-GASNVTCAYRRDEAN---M------------------------PG------------ 508 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCCeEEEeEecCCCC---C------------------------CC------------
Confidence 4799999999999999988888 76 699998864320 0 00
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEe-CCEEEEEEEceeee-eccCCCC-----CCCCCeEEEcCEEEEcCCCCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV-SMNHDTQ-----SCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~-~~~v~gv~~~~~~~-~~~~~~~-----~~g~~~~i~A~~VIlAtGg~s 243 (359)
....++.+ ++.|+++++++.+.++..+ ++++.+|++...-. ..+.++. ..+...++.+|.||+|.|-..
T Consensus 509 ---~~~e~~~~-~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p 584 (654)
T PRK12769 509 ---SKKEVKNA-REEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNP 584 (654)
T ss_pred ---CHHHHHHH-HHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCC
Confidence 01112333 3679999999999998754 57888876532100 0000000 012345799999999999544
No 359
>PLN02976 amine oxidase
Probab=97.33 E-value=0.00023 Score=78.57 Aligned_cols=43 Identities=33% Similarity=0.606 Sum_probs=38.4
Q ss_pred cCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcc
Q 018188 89 YADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW 132 (359)
Q Consensus 89 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~ 132 (359)
...+||+|||+|++|+.+|+.|.+. |++|+|+|+...+||..+
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vGGri~ 733 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIGGRVY 733 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCCCcee
Confidence 3458999999999999999999999 999999999998887643
No 360
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.33 E-value=0.00027 Score=69.26 Aligned_cols=41 Identities=37% Similarity=0.572 Sum_probs=36.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
...|||||||.|||+||.+|.++...+|+|+|..+.+||..
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI 61 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence 45899999999999999999977467899999999998653
No 361
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.28 E-value=0.0027 Score=63.99 Aligned_cols=108 Identities=17% Similarity=0.218 Sum_probs=69.9
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
..|+|||+|..|+.+|..+.+. |. +|+|+++..... ++. ..
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~-Ga~~Vtvv~r~~~~~---------------------------~~~----------~~ 324 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRL-GAASVTCAYRRDEAN---------------------------MPG----------SR 324 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCeEEEEEecCccc---------------------------CCC----------CH
Confidence 5899999999999999998888 85 799999875320 000 00
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEe-CCEEEEEEEceeee-eccCCCC-----CCCCCeEEEcCEEEEcCCCCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV-SMNHDTQ-----SCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~-~~~v~gv~~~~~~~-~~~~~~~-----~~g~~~~i~A~~VIlAtGg~s 243 (359)
..+..+. +.|+++++++.+.++..+ ++++.++....... ..+.++. ..++..++.+|.||+|+|-..
T Consensus 325 -----~e~~~~~-~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p 398 (467)
T TIGR01318 325 -----REVANAR-EEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQP 398 (467)
T ss_pred -----HHHHHHH-hcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCC
Confidence 1123333 679999999999998754 46777765421100 0000000 012346899999999999554
No 362
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.27 E-value=0.0022 Score=68.46 Aligned_cols=108 Identities=14% Similarity=0.184 Sum_probs=70.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCe-EEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIR-VAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
-.|||||||..|+-+|..|.+. |.+ |+|+++..... ++- .
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~~~~---------------------------~~~----------~- 611 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRSEEE---------------------------MPA----------R- 611 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCccc---------------------------CCC----------C-
Confidence 4799999999999999999998 887 99999874310 000 0
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEe-CCEEEEEEEceeeee-ccCCCC-----CCCCCeEEEcCEEEEcCCCCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVS-MNHDTQ-----SCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~-~~~v~gv~~~~~~~~-~~~~~~-----~~g~~~~i~A~~VIlAtGg~s 243 (359)
... ++.+ ++.|+++++++.+.++..+ ++++.++........ .+.++. ..++..++.+|.||+|.|-..
T Consensus 612 ---~~e-~~~~-~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p 686 (752)
T PRK12778 612 ---LEE-VKHA-KEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSP 686 (752)
T ss_pred ---HHH-HHHH-HHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCC
Confidence 011 1223 3679999999999988764 467777765311000 000000 012345799999999999654
No 363
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.16 E-value=0.0074 Score=65.53 Aligned_cols=175 Identities=17% Similarity=0.226 Sum_probs=93.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCC-CeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPS-IRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
-.|||||||..|+-+|..+.+.+| .+|+++.++...- + + ..
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~---------M------------------P----------A~- 710 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQE---------M------------------P----------AW- 710 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCccc---------c------------------c----------cc-
Confidence 589999999999999998877635 4899999874210 0 0 00
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCC--CCCCCCCeEEEcCEEEEcCCCCCCCCch
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD--TQSCMDPNVMEAKIVVSSCGHDGPFGAT 248 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~--~~~~g~~~~i~A~~VIlAtGg~s~~~~~ 248 (359)
... ++.+. +.|+++++.+.+.++.. ++++.......+....+.. ....++..++.+|.||+|+|-...
T Consensus 711 ---~eE-le~Al-eeGVe~~~~~~p~~I~~-dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pn---- 780 (1019)
T PRK09853 711 ---REE-YEEAL-EDGVEFKELLNPESFDA-DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVD---- 780 (1019)
T ss_pred ---HHH-HHHHH-HcCCEEEeCCceEEEEc-CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCC----
Confidence 011 22333 46999999888888753 4444322111000000000 000123568999999999995532
Q ss_pred HHHHHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCccceEEEehHHHHHHHHHHhCC
Q 018188 249 GVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 328 (359)
Q Consensus 249 g~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~ 328 (359)
...+...|+...-.+. +.++ +. .+.-.||+|..|..+. | +. ..-..+..|..++..++...+.
T Consensus 781 -telle~~GL~ld~~G~--I~VD--et-----lqTs~pgVFAaGD~a~---G-p~---tvv~Ai~qGr~AA~nI~~~~~~ 843 (1019)
T PRK09853 781 -TELLKANGIPLDKKGW--PVVD--AN-----GETSLTNVYMIGDVQR---G-PS---TIVAAIADARRAADAILSREGI 843 (1019)
T ss_pred -hhHHHhcCccccCCCC--EEeC--CC-----cccCCCCEEEEecccc---C-ch---HHHHHHHHHHHHHHHHhhhcCC
Confidence 2233444431110111 1111 11 1112489999886542 1 10 1112236778888888887764
Q ss_pred Ccc
Q 018188 329 PNA 331 (359)
Q Consensus 329 ~~~ 331 (359)
...
T Consensus 844 ~~~ 846 (1019)
T PRK09853 844 RSH 846 (1019)
T ss_pred Ccc
Confidence 443
No 364
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.14 E-value=0.00048 Score=66.76 Aligned_cols=41 Identities=34% Similarity=0.593 Sum_probs=35.0
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCCc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~~ 131 (359)
..+|+|||||++||++||+|++. |...|+|+|+.+..||..
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 46999999999999999999997 334567799999999854
No 365
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.12 E-value=0.0057 Score=66.62 Aligned_cols=108 Identities=13% Similarity=0.202 Sum_probs=69.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-+|+|||||..|+-+|..+.+. |.+|+++.+.... .++ ..
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~-Ga~Vtlv~rr~~~---------------------------~mp----------a~-- 487 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRL-GGNVTIVYRRTKS---------------------------EMP----------AR-- 487 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEEecCcc---------------------------ccc----------cc--
Confidence 5799999999999999999999 9999999876421 000 00
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeC--CEEEEEEEceeee-eccCCC----CCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALV-SMNHDT----QSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~--~~v~gv~~~~~~~-~~~~~~----~~~g~~~~i~A~~VIlAtGg~s 243 (359)
... ++.+. +.|+++++++.++++..++ +++.++.+..... ..+.++ ...++..++.||.||+|.|-..
T Consensus 488 --~~e-~~~a~-eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p 562 (944)
T PRK12779 488 --VEE-LHHAL-EEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTA 562 (944)
T ss_pred --HHH-HHHHH-HCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCC
Confidence 111 22232 5699999999999987653 3677665421000 000000 0123446799999999999553
No 366
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0026 Score=59.88 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=62.9
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcc------------hhHHHHHHHcCCcce
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVR------------KPAQRFLDELGVEYD 159 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~------------~~~~~~l~~~G~~~~ 159 (359)
..|-|||||.||..+|++++++ |++|.|.|-++.-+......+. +..+++. ......++.+|--.-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~k~TpaH~td~-fAELVCSNSlr~~~~~navGlLk~EMR~lgSlii 81 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPVKGTPAHKTDN-FAELVCSNSLRSDALTNAVGLLKAEMRLLGSLII 81 (439)
T ss_pred CceEEEcccccccHHHHHHHHc-CCcEEEEEcccccCCCcccccc-hhhheeccccccchhhhhhHHHHHHHHHhhhHHh
Confidence 4689999999999999999999 9999999987644322111111 1111100 112233444442110
Q ss_pred e-------cCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEE
Q 018188 160 E-------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 199 (359)
Q Consensus 160 ~-------~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~ 199 (359)
. ..+..+-.+...|...+.+.+..++.|+++.+ +|+++-
T Consensus 82 ~~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vire-Evt~iP 127 (439)
T COG1206 82 EAADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIRE-EVTEIP 127 (439)
T ss_pred hhhhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEcc-ccccCC
Confidence 0 01222334556677777788877888888776 666663
No 367
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.03 E-value=0.0069 Score=58.44 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=64.8
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCCcccCCcceeehhcchhHH------------HHHHHcC-C
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQ------------RFLDELG-V 156 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~------------~~l~~~G-~ 156 (359)
...|+|||||.++..++..|.++ +..+|.++-|+...-- .....+.+. ...+... +.+.+.. .
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~--~d~s~f~ne-~f~P~~v~~f~~l~~~~R~~~l~~~~~~ 266 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFP--MDDSPFVNE-IFSPEYVDYFYSLPDEERRELLREQRHT 266 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB------CCHHG-GGSHHHHHHHHTS-HHHHHHHHHHTGGG
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCC--Cccccchhh-hcCchhhhhhhcCCHHHHHHHHHHhHhh
Confidence 47899999999999999999886 1358999988753200 000000000 1111111 2222211 1
Q ss_pred cceecCCeEEEechHHHH----HHHHHH-HHhCCCcEEEcceeeeeEEEeC-CEEEEEEEceeeeeccCCCCCCCCCeEE
Q 018188 157 EYDEQDNYVVIKHAALFT----STIMSK-LLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVM 230 (359)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~----~~L~~~-~~~~~gv~i~~~~~V~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i 230 (359)
.++ .+ ..+++ +.++++ +..+..++++.+++|+++...+ +++. +.+.. . ..+...++
T Consensus 267 ny~------~i--~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~------~---~~~~~~~~ 328 (341)
T PF13434_consen 267 NYG------GI--DPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVR-LTLRH------R---QTGEEETL 328 (341)
T ss_dssp TSS------EB---HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEE-EEEEE------T---TT--EEEE
T ss_pred cCC------CC--CHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEE-EEEEE------C---CCCCeEEE
Confidence 111 11 12223 333332 3234569999999999998877 4554 22221 1 12245789
Q ss_pred EcCEEEEcCC
Q 018188 231 EAKIVVSSCG 240 (359)
Q Consensus 231 ~A~~VIlAtG 240 (359)
.+|.||+|||
T Consensus 329 ~~D~VilATG 338 (341)
T PF13434_consen 329 EVDAVILATG 338 (341)
T ss_dssp EESEEEE---
T ss_pred ecCEEEEcCC
Confidence 9999999999
No 368
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0035 Score=58.19 Aligned_cols=48 Identities=29% Similarity=0.433 Sum_probs=34.4
Q ss_pred ccEEEECCChHHHHHHHHhhcC------CCCeEEEEeeccCCCCCcccCCccee
Q 018188 92 TDVIVVGAGSAGLSCAYEISKN------PSIRVAIIEQSVSPGGGAWLGGQLFS 139 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~------~G~~V~vlEk~~~~GG~~~~~g~~~~ 139 (359)
.+|+|||+|..||++|+.+.+. |-++|.+++-...+-..++...++|.
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~ 57 (342)
T KOG3923|consen 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFR 57 (342)
T ss_pred ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceee
Confidence 5899999999999999776652 45789999877655444444444443
No 369
>PRK13984 putative oxidoreductase; Provisional
Probab=96.90 E-value=0.011 Score=61.58 Aligned_cols=109 Identities=15% Similarity=0.277 Sum_probs=66.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC------eEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeE
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSI------RVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYV 165 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~------~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~ 165 (359)
-.|+|||||..|+-+|..|++. +. +|.++....... . +..
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~-~~~~~g~~~V~v~~~~r~~~--------------------------~--~~~----- 464 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARL-QKMEYGEVNVKVTSLERTFE--------------------------E--MPA----- 464 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhc-cccccCceEEEEeccccCcc--------------------------c--CCC-----
Confidence 5899999999999999999876 43 566653211000 0 000
Q ss_pred EEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCC-----CCCCCeEEEcCEEEEcCC
Q 018188 166 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ-----SCMDPNVMEAKIVVSSCG 240 (359)
Q Consensus 166 ~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~-----~~g~~~~i~A~~VIlAtG 240 (359)
. ... +..+. +.|+++++++.+.++..+++++.++.........+.++. ..++..++.+|.||+|.|
T Consensus 465 ---~----~~e-~~~~~-~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG 535 (604)
T PRK13984 465 ---D----MEE-IEEGL-EEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIG 535 (604)
T ss_pred ---C----HHH-HHHHH-HcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeC
Confidence 0 111 12222 469999999988888766778888765321100111100 012346799999999999
Q ss_pred CCC
Q 018188 241 HDG 243 (359)
Q Consensus 241 g~s 243 (359)
-..
T Consensus 536 ~~p 538 (604)
T PRK13984 536 QAP 538 (604)
T ss_pred CCC
Confidence 654
No 370
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.85 E-value=0.013 Score=61.44 Aligned_cols=172 Identities=17% Similarity=0.195 Sum_probs=92.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKH 169 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 169 (359)
.-.|+|||+|..|+.+|..+.+. |. +|+|+++....- ++. .
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~-Ga~~Vtlv~r~~~~~---------------------------mpa----------~ 364 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRL-GAESVTILYRRTREE---------------------------MPA----------N 364 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecCccc---------------------------CCC----------C
Confidence 35899999999999999999988 75 699998764210 000 0
Q ss_pred hHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEE--EEEEceeeeeccCCCC-----CCCCCeEEEcCEEEEcCCCC
Q 018188 170 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVG--GVVTNWALVSMNHDTQ-----SCMDPNVMEAKIVVSSCGHD 242 (359)
Q Consensus 170 ~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~--gv~~~~~~~~~~~~~~-----~~g~~~~i~A~~VIlAtGg~ 242 (359)
. .. +.++. +.|+++++++.+.++..+++++. .+....+. .+..+. ..++...+.+|.||+|+|-.
T Consensus 365 ~----~e-i~~a~-~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~--~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 365 R----AE-IEEAL-AEGVSLRELAAPVSIERSEGGLELTAIKMQQGE--PDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred H----HH-HHHHH-HcCCcEEeccCcEEEEecCCeEEEEEEEEEecc--cCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 1 11 22222 46999999999988876666532 22221110 000000 01234579999999999954
Q ss_pred CCCCchHHHHHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCccceEEEehHHHHHHH
Q 018188 243 GPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLA 322 (359)
Q Consensus 243 s~~~~~g~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g~~l~sG~~~~~l~ 322 (359)
... ..+...|+.....+ .+.++ +. ..+.-.||+|..|+.+. + +. ..-..+-.|..++..+
T Consensus 437 p~~-----~ll~~~gl~~~~~G--~I~vd--~~----~~~Ts~pgVfA~GDv~~---g-~~---~v~~Ai~~G~~AA~~I 496 (652)
T PRK12814 437 VDP-----PIAEAAGIGTSRNG--TVKVD--PE----TLQTSVAGVFAGGDCVT---G-AD---IAINAVEQGKRAAHAI 496 (652)
T ss_pred CCc-----ccccccCccccCCC--cEeeC--CC----CCcCCCCCEEEcCCcCC---C-ch---HHHHHHHHHHHHHHHH
Confidence 321 11222222100001 11111 10 11123488998876541 1 10 1111225678888888
Q ss_pred HHHhCC
Q 018188 323 LKALGQ 328 (359)
Q Consensus 323 l~~~~~ 328 (359)
.+.|..
T Consensus 497 ~~~L~g 502 (652)
T PRK12814 497 DLFLNG 502 (652)
T ss_pred HHHHcC
Confidence 877753
No 371
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.015 Score=55.23 Aligned_cols=96 Identities=19% Similarity=0.301 Sum_probs=72.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
..||+|||||-+.+-.|+.|++. +.+|+++=|+.... +
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~-a~~Vtlv~r~~~~r-----------------------------------------a 180 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKI-AKKVTLVHRRDEFR-----------------------------------------A 180 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHh-cCeEEEEecCcccC-----------------------------------------c
Confidence 35999999999999999999998 88999998886431 0
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
...+.+++.+..++++++++.+.++.-++ +.+|+..+. . +....+..+.|.++.|...
T Consensus 181 ---~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~------~----~~~~~~~~~gvf~~iG~~p 238 (305)
T COG0492 181 ---EEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNV------K----GEEKELPVDGVFIAIGHLP 238 (305)
T ss_pred ---CHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEec------C----CceEEEEeceEEEecCCCC
Confidence 13334555545589999999999987554 666666421 0 2346899999999999665
No 372
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.74 E-value=0.024 Score=61.87 Aligned_cols=170 Identities=18% Similarity=0.255 Sum_probs=90.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKH 169 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 169 (359)
.-.|+|||||..|+-+|..+.+.+|. +|+++++..... ++. .
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~---------------------------Mpa----------~ 708 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRY---------------------------MPA----------S 708 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccc---------------------------ccc----------C
Confidence 35899999999999999988775465 799999874210 000 0
Q ss_pred hHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCC----CCCCCCCeEEEcCEEEEcCCCCCCC
Q 018188 170 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD----TQSCMDPNVMEAKIVVSSCGHDGPF 245 (359)
Q Consensus 170 ~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~----~~~~g~~~~i~A~~VIlAtGg~s~~ 245 (359)
... ++.+. +.|+++++.+.+..+. ++++.......+ ..+.. ....++..++.+|.||+|+|-...
T Consensus 709 ----~eE-l~~al-eeGVe~~~~~~p~~I~--~g~l~v~~~~l~--~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pn- 777 (1012)
T TIGR03315 709 ----REE-LEEAL-EDGVDFKELLSPESFE--DGTLTCEVMKLG--EPDASGRRRPVGTGETVDLPADTVIAAVGEQVD- 777 (1012)
T ss_pred ----HHH-HHHHH-HcCCEEEeCCceEEEE--CCeEEEEEEEee--cccCCCceeeecCCCeEEEEeCEEEEecCCcCC-
Confidence 111 22233 4699999988877775 444432211100 00000 001234467999999999995432
Q ss_pred CchHHHHHHhcCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCccceEEEehHHHHHHHHHH
Q 018188 246 GATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKA 325 (359)
Q Consensus 246 ~~~g~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~ 325 (359)
...+...|+.....+. +.++ +. ..+.-.||+|..|..+. | +. ..-..+..|..++..++.+
T Consensus 778 ----t~lle~~GL~ld~~G~--I~VD--~~----~~~Ts~pgVFAaGD~a~---G-P~---tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 778 ----TDLLQKNGIPLDEYGW--PVVN--QA----TGETNITNVFVIGDANR---G-PA---TIVEAIADGRKAANAILSR 838 (1012)
T ss_pred ----hHHHHhcCcccCCCCC--EEeC--CC----CCccCCCCEEEEeCcCC---C-cc---HHHHHHHHHHHHHHHHhcc
Confidence 2233444431110111 1111 10 01123489999886541 1 11 1112336677888777755
Q ss_pred hC
Q 018188 326 LG 327 (359)
Q Consensus 326 ~~ 327 (359)
.+
T Consensus 839 ~~ 840 (1012)
T TIGR03315 839 EG 840 (1012)
T ss_pred cc
Confidence 43
No 373
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.73 E-value=0.013 Score=64.31 Aligned_cols=180 Identities=16% Similarity=0.197 Sum_probs=98.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCe-EEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIR-VAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKH 169 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 169 (359)
.-+|+|||||..|+-+|..+.+. |.+ |+++.+..... ++- .
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rl-Ga~~Vtiv~rr~~~e---------------------------m~a----------~ 612 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRL-GAPTVRCVYRRSEAE---------------------------APA----------R 612 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCCEEEEEeecCccc---------------------------CCC----------C
Confidence 35899999999999999999888 774 77887653210 000 0
Q ss_pred hHHHHHHHHHHHHhCCCcEEEcceeeeeEEEe-CCEEEEEEEceeee-eccCCC----CCCCCCeEEEcCEEEEcCCCCC
Q 018188 170 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV-SMNHDT----QSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 170 ~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~-~~~v~gv~~~~~~~-~~~~~~----~~~g~~~~i~A~~VIlAtGg~s 243 (359)
... ++.+ ++.|+++++++.+.++..+ ++++.++.+..... ..+..+ ...++..++.+|.||+|.|-..
T Consensus 613 ----~~e-~~~a-~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p 686 (1006)
T PRK12775 613 ----IEE-IRHA-KEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKA 686 (1006)
T ss_pred ----HHH-HHHH-HhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCC
Confidence 011 1233 3679999999999998754 57888876532100 001000 0122345799999999999554
Q ss_pred CCCchHHHHHHh-cCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCccceEEEehHHHHHHH
Q 018188 244 PFGATGVKRLKS-IGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLA 322 (359)
Q Consensus 244 ~~~~~g~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g~~l~sG~~~~~l~ 322 (359)
.. ..+.. .|+.....+. +..+ +..+....+.-.||+|..|+.+. | +. ..-..+..|..++..+
T Consensus 687 ~~-----~~~~~~~gl~l~~~G~--I~vd--~~~v~~~~~Ts~pgVFAaGDv~~---G-~~---~vv~Ai~~Gr~AA~~I 750 (1006)
T PRK12775 687 NP-----IITQSTPGLALNKWGN--IAAD--DGKLESTQSTNLPGVFAGGDIVT---G-GA---TVILAMGAGRRAARSI 750 (1006)
T ss_pred Ch-----hhhhccCCcccCCCCc--EEeC--CCccccCcCCCCCCEEEecCcCC---C-cc---HHHHHHHHHHHHHHHH
Confidence 21 11111 1110000010 1111 00000111223589998876541 1 10 1112226788999998
Q ss_pred HHHhCCCc
Q 018188 323 LKALGQPN 330 (359)
Q Consensus 323 l~~~~~~~ 330 (359)
.+.|....
T Consensus 751 ~~~L~~~~ 758 (1006)
T PRK12775 751 ATYLRLGK 758 (1006)
T ss_pred HHHHhcCC
Confidence 88886543
No 374
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.66 E-value=0.017 Score=60.60 Aligned_cols=108 Identities=13% Similarity=0.159 Sum_probs=68.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
..|+|||+|..|+-+|..+.+. |. +|+++++..... ++- ..
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~-Ga~~Vt~v~rr~~~~---------------------------~~~----------~~ 493 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRL-NAASVTCAYRRDEVS---------------------------MPG----------SR 493 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCccc---------------------------CCC----------CH
Confidence 5899999999999999887777 74 799998864320 000 00
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEe-CCEEEEEEEceeee-eccCCC-----CCCCCCeEEEcCEEEEcCCCCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV-SMNHDT-----QSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~-~~~v~gv~~~~~~~-~~~~~~-----~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.. +..+ ++.|+++++++.++++..+ ++++.++.+..... ..+.++ ...++..++.+|.||+|.|-..
T Consensus 494 ----~e-~~~a-~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 494 ----KE-VVNA-REEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred ----HH-HHHH-HHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCC
Confidence 11 1222 3679999999999998754 46787765421000 000000 0012346899999999999543
No 375
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.60 E-value=0.089 Score=53.25 Aligned_cols=128 Identities=16% Similarity=0.191 Sum_probs=65.0
Q ss_pred CCcEEEcceeeeeEEEe---CCEEEEEEEceeeeeccC-CC----CCCCCCeEEEcCEEEEcCCCCCCCCchHHHHHHhc
Q 018188 185 PNVKLFNAVAAEDLIVK---GGRVGGVVTNWALVSMNH-DT----QSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSI 256 (359)
Q Consensus 185 ~gv~i~~~~~V~~l~~~---~~~v~gv~~~~~~~~~~~-~~----~~~g~~~~i~A~~VIlAtGg~s~~~~~g~~~~~~~ 256 (359)
.++.+++...-++|..+ +++|.++++......... +. ...++..++.+|.||.|-|..+.+. .++.+....
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~-~~l~f~~~~ 366 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPV-DGLPFDHKR 366 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCC-CCCccccCc
Confidence 47899998888888742 268888877532111110 00 0134456899999999999664221 111111111
Q ss_pred CCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCCccceEEEehHHHHHHHHHHhCC
Q 018188 257 GMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 328 (359)
Q Consensus 257 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~ 328 (359)
|+....-+... .+ + ......||+|..|.... |-. + ..+..+.-+..+++.+++.+..
T Consensus 367 gv~~n~~G~V~--~d--~-----~~~T~ipGvyAaGDi~~---Gp~--g-vI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 367 GVVPNVHGRVL--SS--A-----SGADTEPGLYVVGWLKR---GPT--G-IIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred CeeECCCceEE--eC--C-----CCccCCCCEEEeeeEec---CCC--C-eeeecHhhHHHHHHHHHHHHHc
Confidence 22111111110 10 0 01234599999876542 110 0 1223335567777778877644
No 376
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.48 E-value=0.044 Score=55.53 Aligned_cols=123 Identities=16% Similarity=0.176 Sum_probs=65.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
..|+|||+|..|+-+|..+.+..+.+|+++|..+..... ......+.......
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 336 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEA---------------------------RAKDNPWPEWPRVY 336 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhh---------------------------cccccCCCccchhh
Confidence 579999999999999877777623579999987543100 00000000000000
Q ss_pred HHHHHHHHHHHhCCCcEE-EcceeeeeEEEeC-CEEEEEEEceeeeeccCCCC-----CCCCCeEEEcCEEEEcCCCC
Q 018188 172 LFTSTIMSKLLARPNVKL-FNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQ-----SCMDPNVMEAKIVVSSCGHD 242 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i-~~~~~V~~l~~~~-~~v~gv~~~~~~~~~~~~~~-----~~g~~~~i~A~~VIlAtGg~ 242 (359)
+ .....++..+..|+.+ ++++.+.++..++ +++.++.+..-....+.++. ..++..++.+|.||+|.|-.
T Consensus 337 e-~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~ 413 (485)
T TIGR01317 337 R-VDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFV 413 (485)
T ss_pred h-hHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcC
Confidence 0 1111233333456654 4677778886553 67887764210000000100 12234589999999999954
No 377
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.016 Score=55.06 Aligned_cols=96 Identities=21% Similarity=0.307 Sum_probs=68.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
..||.|||||-+|+.+|+-|+-- -..|+|+|=.+.. .+
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~eL-----------------------------------------kA 391 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEL-----------------------------------------KA 391 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhh-hheeeeeecchhh-----------------------------------------hh
Confidence 36999999999999999999854 3579999966542 01
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCG 240 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtG 240 (359)
...|.+++..-+|++|+.+..-+++.-++++|+|....+. . .++...+.=.-|.+--|
T Consensus 392 ---D~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr------~---sge~~~l~LeGvFVqIG 449 (520)
T COG3634 392 ---DAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDR------V---SGEEHHLELEGVFVQIG 449 (520)
T ss_pred ---HHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEec------c---CCceeEEEeeeeEEEEe
Confidence 2344556666789999999999999877789999877532 1 22334555555555555
No 378
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.26 E-value=0.013 Score=59.16 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..|+|||+|.+|+.+|..|.++ |.+|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL-GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 3699999999999999999999 99999999764
No 379
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.16 E-value=0.045 Score=56.48 Aligned_cols=173 Identities=21% Similarity=0.256 Sum_probs=94.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCC-CeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPS-IRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKH 169 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G-~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 169 (359)
...|+|||+|..|+.+|..+.+. + .+|+|+.+....- +. .+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~l-ga~~v~ii~r~~~~~-----------------------------~~--------~~ 308 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRL-GAEEVTIVYRRTRED-----------------------------MP--------AH 308 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHc-CCCEEEEEEecCccc-----------------------------CC--------CC
Confidence 35799999999999999888887 6 5788888764310 00 00
Q ss_pred hHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeee-eccCCCC---CCCCCeEEEcCEEEEcCCCCCCC
Q 018188 170 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV-SMNHDTQ---SCMDPNVMEAKIVVSSCGHDGPF 245 (359)
Q Consensus 170 ~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~-~~~~~~~---~~g~~~~i~A~~VIlAtGg~s~~ 245 (359)
... +..+. +.|+++++++.+.++..+++++.+++...--. ..+.++. ..++..++.+|.||+|+|.....
T Consensus 309 ----~~~-~~~a~-~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~ 382 (564)
T PRK12771 309 ----DEE-IEEAL-REGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDS 382 (564)
T ss_pred ----HHH-HHHHH-HcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCch
Confidence 111 22333 56999999999999976554444554321000 0000000 02345689999999999954421
Q ss_pred CchHHHHHHh-cCCcccccccccccccchhhHHhhhccccCCCeeEeceEEEeecCCCCCCC-ccceEEEehHHHHHHHH
Q 018188 246 GATGVKRLKS-IGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGP-TFGAMMISGQKAAHLAL 323 (359)
Q Consensus 246 ~~~g~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~g~~~~~~-~~g~~l~sG~~~~~l~l 323 (359)
..+.. .++. .-.+ .+.++ +.. ...-.||+|..|..+. ++ ..-..+-.|..++..+.
T Consensus 383 -----~~~~~~~gl~-~~~G--~i~vd--~~~----~~ts~~~Vfa~GD~~~--------g~~~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 383 -----AGLESVPGVE-VGRG--VVQVD--PNF----MMTGRPGVFAGGDMVP--------GPRTVTTAIGHGKKAARNID 440 (564)
T ss_pred -----hhhhhccCcc-cCCC--CEEeC--CCC----ccCCCCCEEeccCcCC--------CchHHHHHHHHHHHHHHHHH
Confidence 12221 1221 0011 11111 101 1123488888876542 11 11223367788888888
Q ss_pred HHhCCC
Q 018188 324 KALGQP 329 (359)
Q Consensus 324 ~~~~~~ 329 (359)
+.|...
T Consensus 441 ~~L~g~ 446 (564)
T PRK12771 441 AFLGGE 446 (564)
T ss_pred HHHcCC
Confidence 877543
No 380
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.025 Score=50.62 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=72.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
.-.+|||||-+-+.=|..|.+. +.+|.+|-|++... +
T Consensus 158 k~laVIGGGDsA~EEA~fLtky-askVyii~Rrd~fR-----------------------------------------A- 194 (322)
T KOG0404|consen 158 KPLAVIGGGDSAMEEALFLTKY-ASKVYIIHRRDHFR-----------------------------------------A- 194 (322)
T ss_pred CeeEEEcCcHHHHHHHHHHHhh-ccEEEEEEEhhhhh-----------------------------------------H-
Confidence 4689999999999999999999 99999998886420 1
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
...+.+++.+.+++++++++.+.+..-+.+.+.++...+ .+ .++...+..+-+..|-|+..
T Consensus 195 --s~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn------~~---tge~~dl~v~GlFf~IGH~P 255 (322)
T KOG0404|consen 195 --SKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKN------VK---TGEETDLPVSGLFFAIGHSP 255 (322)
T ss_pred --HHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEe------cc---cCcccccccceeEEEecCCc
Confidence 234456666788999999998887765544444554432 22 23456789999999999754
No 381
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.76 E-value=0.067 Score=52.26 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=63.9
Q ss_pred ccEEEECCChHHHHHHHHhhc--------------CCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCc
Q 018188 92 TDVIVVGAGSAGLSCAYEISK--------------NPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVE 157 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~--------------~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~ 157 (359)
-..|||||||.|...|-+|+. . .++|+++|..+.+ ..++++
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~-~i~vtLiEA~d~i--------------------L~mFdk---- 273 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKK-DIKVTLIEAADHI--------------------LNMFDK---- 273 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchh-heEEEeeccchhH--------------------HHHHHH----
Confidence 579999999999999988863 2 4689999987642 122221
Q ss_pred ceecCCeEEEechHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEE
Q 018188 158 YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVS 237 (359)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIl 237 (359)
. .....+....+.++++..++.|.++. +..+. +.+. +|+..+|..-.+|.
T Consensus 274 --------------r-l~~yae~~f~~~~I~~~~~t~Vk~V~--~~~I~-~~~~------------~g~~~~iPYG~lVW 323 (491)
T KOG2495|consen 274 --------------R-LVEYAENQFVRDGIDLDTGTMVKKVT--EKTIH-AKTK------------DGEIEEIPYGLLVW 323 (491)
T ss_pred --------------H-HHHHHHHHhhhccceeecccEEEeec--CcEEE-EEcC------------CCceeeecceEEEe
Confidence 1 12223333347899999999888773 22222 2221 23457888999999
Q ss_pred cCCCCC
Q 018188 238 SCGHDG 243 (359)
Q Consensus 238 AtGg~s 243 (359)
|||...
T Consensus 324 atG~~~ 329 (491)
T KOG2495|consen 324 ATGNGP 329 (491)
T ss_pred cCCCCC
Confidence 999554
No 382
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.74 E-value=0.0069 Score=56.85 Aligned_cols=36 Identities=33% Similarity=0.465 Sum_probs=30.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeecc
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSV 125 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~ 125 (359)
.++.|+|||||.+|+..|..+.+. +.-+|.|||...
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 468999999999999999988774 345799999765
No 383
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.65 E-value=0.0099 Score=54.35 Aligned_cols=33 Identities=42% Similarity=0.680 Sum_probs=28.5
Q ss_pred EEEECCChHHHHHHHHhhcC-CCCeEEEEeeccC
Q 018188 94 VIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVS 126 (359)
Q Consensus 94 VvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~ 126 (359)
.+|||||+||.+||-+|+.. |...|+|+-..+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 58999999999999999974 6889999987653
No 384
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.13 Score=49.89 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=36.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~ 131 (359)
+|||+|+|.|..=+..+..|+.. |.+|+.+||++.-||..
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG~~s 43 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYGGES 43 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCCccc
Confidence 49999999999999999999999 99999999999877543
No 385
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.37 E-value=0.099 Score=54.37 Aligned_cols=108 Identities=14% Similarity=0.204 Sum_probs=65.6
Q ss_pred ccEEEECCChHHHHHHHHhhcC-C-CCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEec
Q 018188 92 TDVIVVGAGSAGLSCAYEISKN-P-SIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKH 169 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~-~-G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 169 (359)
..+||||.|++|..+..++.+. | -..++++-..+.+.-... +.+..+..+ ..
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri----~Ls~vl~~~----------------------~~ 57 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRI----LLSSVLAGE----------------------KT 57 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccce----eeccccCCC----------------------cc
Confidence 4689999999999999888772 1 467888866554311000 000000000 00
Q ss_pred hHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 170 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 170 ~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
..+..-.-.+.+ +++|++++.+.+|+.+..++..|+ .. .+.++..|.+|+|||.+.
T Consensus 58 ~edi~l~~~dwy-~~~~i~L~~~~~v~~idr~~k~V~---t~--------------~g~~~~YDkLilATGS~p 113 (793)
T COG1251 58 AEDISLNRNDWY-EENGITLYTGEKVIQIDRANKVVT---TD--------------AGRTVSYDKLIIATGSYP 113 (793)
T ss_pred HHHHhccchhhH-HHcCcEEEcCCeeEEeccCcceEE---cc--------------CCcEeecceeEEecCccc
Confidence 111111112233 478999999999999977655432 22 247899999999999765
No 386
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.32 E-value=0.035 Score=55.82 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=30.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
...|+|||+|.+|+-.|..|++. +.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKV-AKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHh-CCeEEEEEeec
Confidence 35799999999999999999998 89999998864
No 387
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=94.98 E-value=0.27 Score=48.18 Aligned_cols=115 Identities=15% Similarity=0.183 Sum_probs=65.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEech
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHA 170 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 170 (359)
...|||+|+|-+|++....|-.. -++|+||..+... +|.+++-. .. .-..+.
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts-~YdV~vVSPRnyF---------lFTPLLpS--------------~~----vGTve~ 106 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTS-LYDVTVVSPRNYF---------LFTPLLPS--------------TT----VGTVEL 106 (491)
T ss_pred CceEEEEcCchHHHHHHHhcccc-ccceEEeccccce---------EEeeccCC--------------cc----ccceee
Confidence 46899999999999999888777 7899999877532 11111100 00 001122
Q ss_pred HHHHHHHHHHHHhCC-CcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 171 ALFTSTIMSKLLARP-NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~-gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+.+.+.+..-..+.. +++++. .+..++..++.+|. +... ..+.. .....|..|++|+|+|+..
T Consensus 107 rSIvEPIr~i~r~k~~~~~y~e-Aec~~iDp~~k~V~-~~s~------t~~~~--~~e~~i~YDyLViA~GA~~ 170 (491)
T KOG2495|consen 107 RSIVEPIRAIARKKNGEVKYLE-AECTKIDPDNKKVH-CRSL------TADSS--DKEFVIGYDYLVIAVGAEP 170 (491)
T ss_pred hhhhhhHHHHhhccCCCceEEe-cccEeecccccEEE-Eeee------ccCCC--cceeeecccEEEEeccCCC
Confidence 333444433333344 455544 46677765555543 2211 01110 1246789999999999865
No 388
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.69 E-value=0.075 Score=51.72 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=61.2
Q ss_pred EEEECCChHHHHHHHHhhcC-CCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechHH
Q 018188 94 VIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAAL 172 (359)
Q Consensus 94 VvIIGgG~aGl~aA~~La~~-~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~ 172 (359)
++|||+|.+|+.+|..+.+. ++..+.++.+.......... .. .+ ++..... ...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~---~~----------~~---~~~~~~~---------~~~ 55 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCP---LS----------LY---VGGGIAS---------LED 55 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCc---cc----------hH---HhcccCC---------HHH
Confidence 58999999999999987763 36778877776543210000 00 00 0000000 000
Q ss_pred HHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018188 173 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGP 244 (359)
Q Consensus 173 ~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s~ 244 (359)
+... .... .+.+++++.+++|..+......+. .. +. .+..|++|+|||....
T Consensus 56 ~~~~-~~~~-~~~~i~~~~~~~v~~id~~~~~v~---~~--------------~g-~~~yd~LvlatGa~~~ 107 (415)
T COG0446 56 LRYP-PRFN-RATGIDVRTGTEVTSIDPENKVVL---LD--------------DG-EIEYDYLVLATGARPR 107 (415)
T ss_pred hccc-chhH-HhhCCEEeeCCEEEEecCCCCEEE---EC--------------CC-cccccEEEEcCCCccc
Confidence 0000 0011 256899999999999876655432 21 12 7889999999997653
No 389
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.34 E-value=0.2 Score=49.64 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=33.1
Q ss_pred HHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEE--cCEEEEcCCCCC
Q 018188 181 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVME--AKIVVSSCGHDG 243 (359)
Q Consensus 181 ~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~--A~~VIlAtGg~s 243 (359)
+.++.|++++.+++|+++..+++.+. +... +...++. +|+||+|||...
T Consensus 53 ~~~~~gv~~~~~~~V~~id~~~~~v~-~~~~-------------~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 53 FIKKRGIDVKTNHEVIEVNDERQTVV-VRNN-------------KTNETYEESYDYLILSPGASP 103 (427)
T ss_pred HHHhcCCeEEecCEEEEEECCCCEEE-EEEC-------------CCCCEEecCCCEEEECCCCCC
Confidence 33467999998999999876665443 2111 0124566 999999999754
No 390
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.18 E-value=0.75 Score=44.93 Aligned_cols=136 Identities=16% Similarity=0.232 Sum_probs=68.9
Q ss_pred EEEECCChHHHHHHHHhhcC-CCCe--EEEEeeccCC--CCCcccCCcceeehh------cchhH-HHHHHHcCCcceec
Q 018188 94 VIVVGAGSAGLSCAYEISKN-PSIR--VAIIEQSVSP--GGGAWLGGQLFSAMV------VRKPA-QRFLDELGVEYDEQ 161 (359)
Q Consensus 94 VvIIGgG~aGl~aA~~La~~-~G~~--V~vlEk~~~~--GG~~~~~g~~~~~~~------~~~~~-~~~l~~~G~~~~~~ 161 (359)
|.|||+|.++..+-+.|-.. +... +..|-|+... -..+-.+-..|.+.. +..+. .+.+.+.+..|+.-
T Consensus 190 V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI 269 (436)
T COG3486 190 VTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGI 269 (436)
T ss_pred EEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCcccccc
Confidence 99999999999988887642 1222 4445554321 000000001111100 11111 22333333322211
Q ss_pred CCeEEEechHHHHHHHHHHHHh--CCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcC
Q 018188 162 DNYVVIKHAALFTSTIMSKLLA--RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSC 239 (359)
Q Consensus 162 ~~~~~~~~~~~~~~~L~~~~~~--~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAt 239 (359)
. ..--.++...|+++... ++++.++..++|..++-.++.-.-+... ++ ..++..+++.|.||+||
T Consensus 270 ~----~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~------~~---~~~~~~t~~~D~vIlAT 336 (436)
T COG3486 270 S----FDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLR------HH---ETGELETVETDAVILAT 336 (436)
T ss_pred C----HHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEe------ec---cCCCceEEEeeEEEEec
Confidence 0 00112334555555332 5679999999999998765421222221 11 12356889999999999
Q ss_pred CCC
Q 018188 240 GHD 242 (359)
Q Consensus 240 Gg~ 242 (359)
|-.
T Consensus 337 GY~ 339 (436)
T COG3486 337 GYR 339 (436)
T ss_pred ccc
Confidence 944
No 391
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.084 Score=50.65 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=36.5
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGG 130 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~ 130 (359)
..|||+|+|.|..-+..+..|+.. |.+|+.||+++.-|+.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYGST 44 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccCcc
Confidence 369999999999999999999999 9999999999987754
No 392
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=94.05 E-value=0.19 Score=49.01 Aligned_cols=98 Identities=14% Similarity=0.278 Sum_probs=62.3
Q ss_pred ccEEEECCChHHHHHHHHhhcC---CCCeEE-EEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEE
Q 018188 92 TDVIVVGAGSAGLSCAYEISKN---PSIRVA-IIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVI 167 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~---~G~~V~-vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~ 167 (359)
-.|-|||.|..|..+|+.|++. .|.+|. |+|..... .+.|
T Consensus 348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm--------------------~kiL---------------- 391 (659)
T KOG1346|consen 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM--------------------EKIL---------------- 391 (659)
T ss_pred ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh--------------------hhhh----------------
Confidence 5699999999999999999873 144443 33332111 0110
Q ss_pred echHHHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 168 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 168 ~~~~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
+..+.++-+++. ++.||.++.+..|..+....+.+. +++. ++.+++.|.||+|+|-..
T Consensus 392 --Peyls~wt~eki-r~~GV~V~pna~v~sv~~~~~nl~-lkL~--------------dG~~l~tD~vVvavG~eP 449 (659)
T KOG1346|consen 392 --PEYLSQWTIEKI-RKGGVDVRPNAKVESVRKCCKNLV-LKLS--------------DGSELRTDLVVVAVGEEP 449 (659)
T ss_pred --HHHHHHHHHHHH-HhcCceeccchhhhhhhhhccceE-EEec--------------CCCeeeeeeEEEEecCCC
Confidence 111223334444 478999999999988866544332 3333 357899999999999543
No 393
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.69 E-value=0.097 Score=43.83 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=29.0
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 94 VIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 94 VvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
|+|+|+|..|+..|..|++. |.+|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence 68999999999999999998 99999999875
No 394
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.63 E-value=0.082 Score=46.17 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=27.5
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 94 VIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 94 VvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
|.|||+|..|...|..++.. |.+|+++|.+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence 78999999999999999999 99999999875
No 395
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.25 E-value=0.092 Score=44.69 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=29.0
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 94 VIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 94 VvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
|.|||||..|.++|..|+++ |.+|.|..+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 79999999999999999999 99999998764
No 396
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.22 E-value=0.12 Score=45.25 Aligned_cols=34 Identities=29% Similarity=0.563 Sum_probs=28.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
...|+|||+|.++.-+|+.|++. |.+|+++-|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence 46899999999999999999999 99999998875
No 397
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=93.19 E-value=0.22 Score=48.02 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=33.9
Q ss_pred ccEEEECCChHHHHHHHHhhcC---CCCeEEEEeeccCCCCCc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKN---PSIRVAIIEQSVSPGGGA 131 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~---~G~~V~vlEk~~~~GG~~ 131 (359)
..+-|||+|.|||++|..|-+. .|.++-|+|.-+..||+.
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSl 65 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSL 65 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCC
Confidence 5688999999999999999873 278999999988877653
No 398
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.85 E-value=0.12 Score=51.87 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCC
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSP 127 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~ 127 (359)
.|+|||.|++|+++|..|.+. |.+|++.|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC-CCEEEEECCCCch
Confidence 489999999999999999999 9999999987643
No 399
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.84 E-value=0.13 Score=46.64 Aligned_cols=33 Identities=33% Similarity=0.597 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccC
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVS 126 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~ 126 (359)
.++|||+|..|...|..|.+. |..|+++|+...
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHH
Confidence 589999999999999999999 999999998763
No 400
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=0.18 Score=47.98 Aligned_cols=101 Identities=20% Similarity=0.301 Sum_probs=65.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
-.-+|||||..+|.||-.|+-- |+.|+|+=|+-.+.| || +
T Consensus 199 GkTLvVGa~YVaLECAgFL~gf-g~~vtVmVRSI~LrG----------------------------FD-----------q 238 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGF-GYDVTVMVRSILLRG----------------------------FD-----------Q 238 (503)
T ss_pred CceEEEccceeeeehhhhHhhc-CCCcEEEEEEeeccc----------------------------cc-----------H
Confidence 3579999999999999999988 999999888743322 21 1
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeC-CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
++.+. ..+..++.|++++..+..+.+++-+ ++. -|.... ..++ +...-..+.|+.|.|..+
T Consensus 239 dmae~-v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~------t~t~---~~~~~~ydTVl~AiGR~~ 300 (503)
T KOG4716|consen 239 DMAEL-VAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKN------TNTG---EEGEEEYDTVLWAIGRKA 300 (503)
T ss_pred HHHHH-HHHHHHHhCCceeecccceeeeeccCCcE-EEEeec------cccc---ccccchhhhhhhhhcccc
Confidence 22333 3333457899999887777777644 442 233321 1111 223445688999999554
No 401
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.37 E-value=0.16 Score=39.99 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=29.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQS 124 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~ 124 (359)
...|+|||||..|..-+..|.+. |.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence 36899999999999999999999 9999999876
No 402
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=92.10 E-value=1.1 Score=48.85 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=38.7
Q ss_pred CCCcEEEcceeeeeEEEe-CCEEEEEEEceeee------eccCCCC----------CCCCCeEEEcCEEEEcCCC
Q 018188 184 RPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV------SMNHDTQ----------SCMDPNVMEAKIVVSSCGH 241 (359)
Q Consensus 184 ~~gv~i~~~~~V~~l~~~-~~~v~gv~~~~~~~------~~~~~~~----------~~g~~~~i~A~~VIlAtGg 241 (359)
+.||++.+++...+++.+ ++++.++++..... ..-.+++ ..+...++.||.||+|.|-
T Consensus 652 eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~ 726 (1028)
T PRK06567 652 ALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGI 726 (1028)
T ss_pred HcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEeccc
Confidence 679999999999999875 47888887753210 0000000 0113468999999999993
No 403
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=92.02 E-value=0.74 Score=47.21 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=29.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
...|+|||+|.+|+-.|..|++. ..+|.+.-|+.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~-a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRV-AKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTT-SCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHh-cCCeEEEEecc
Confidence 46899999999999999999998 88999887764
No 404
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.89 E-value=0.16 Score=44.63 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=26.4
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||.|..|+.+|..|++. |.+|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK-GHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence 589999999999999999999 99999999875
No 405
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.63 E-value=0.26 Score=49.22 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..|+|+|+|.+|+.+|..|++. |.+|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 5799999999999999999999 99999999864
No 406
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.55 E-value=0.25 Score=44.06 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..|+|||||.+|...+..|.+. |.+|+|+....
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA-GAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 4799999999999999999999 99999998753
No 407
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.52 E-value=0.21 Score=47.35 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
+|.|||+|..|...|..|+++ |.+|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence 599999999999999999999 99999999875
No 408
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.27 E-value=0.31 Score=41.93 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..|+|+|+|.+|..|+..|... |.+|+++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence 6899999999999999999999 99999999864
No 409
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.17 E-value=0.31 Score=38.69 Aligned_cols=31 Identities=26% Similarity=0.535 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 94 VIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 94 VvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
|+|+|.|..|...+..|.+. +.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCc
Confidence 69999999999999999997 88999999985
No 410
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=91.17 E-value=0.35 Score=45.99 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..|+|||+|..|...|..|++. |.+|+++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 4699999999999999999999 99999999864
No 411
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.11 E-value=0.34 Score=40.04 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCe-EEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIR-VAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~vlEk~~ 125 (359)
...++|||+|.+|-.+++.|.+. |.+ |+|+-|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCH
Confidence 46899999999999999999999 877 99998863
No 412
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.87 E-value=0.33 Score=46.01 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..|+|||+|..|...|..|++. |.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence 3699999999999999999999 99999999963
No 413
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.86 E-value=0.35 Score=41.24 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=28.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEee
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQ 123 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk 123 (359)
...|+|||||..|..-+..|.+. |.+|+||.+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~-ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDT-GAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcC
Confidence 46799999999999999999998 999999953
No 414
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=90.82 E-value=0.34 Score=43.09 Aligned_cols=34 Identities=21% Similarity=0.498 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
...|+|||+|..|...|..|++. |. +++|+|...
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCCE
Confidence 47899999999999999999999 98 699999873
No 415
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.60 E-value=0.94 Score=43.45 Aligned_cols=98 Identities=16% Similarity=0.247 Sum_probs=64.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCCcccCCcceeehhcchhHHHHHHHcCCcceecCCeEEEechH
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAQRFLDELGVEYDEQDNYVVIKHAA 171 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 171 (359)
..++|||||..++..|--++-. |..+-|+=|...+ |+ .||.
T Consensus 190 kr~vvvGaGYIavE~Agi~~gL-gsethlfiR~~kv-----------------------LR----~FD~----------- 230 (478)
T KOG0405|consen 190 KRVVVVGAGYIAVEFAGIFAGL-GSETHLFIRQEKV-----------------------LR----GFDE----------- 230 (478)
T ss_pred ceEEEEccceEEEEhhhHHhhc-CCeeEEEEecchh-----------------------hc----chhH-----------
Confidence 4799999999988888777777 8888888777543 00 0111
Q ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 172 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 172 ~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
.++.+..+-.+..|++++.++.+++++..++...-++.. .......|.|+.|+|...
T Consensus 231 -~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~--------------~~~i~~vd~llwAiGR~P 287 (478)
T KOG0405|consen 231 -MISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITS--------------HGTIEDVDTLLWAIGRKP 287 (478)
T ss_pred -HHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEe--------------ccccccccEEEEEecCCC
Confidence 133333333357899999999999998865433223332 112234899999999653
No 416
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.37 E-value=0.36 Score=47.18 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=30.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..+|+|||+|.+|+.+|..|... |.+|+++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence 46799999999999999999999 99999999863
No 417
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.32 E-value=0.27 Score=46.30 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=31.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..+|+|||||.+|..+|.-+.-. |.+|+++|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCH
Confidence 46899999999999999998888 99999999873
No 418
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.30 E-value=0.42 Score=42.50 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=29.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQS 124 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~ 124 (359)
...|+|||||-.|...+..|.+. |.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 36899999999999999999999 9999999864
No 419
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.22 E-value=0.33 Score=40.00 Aligned_cols=33 Identities=18% Similarity=0.654 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
..|+|||+|..|...|..|++. |. +++|+|...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcc
Confidence 5799999999999999999999 87 699999874
No 420
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.04 E-value=0.45 Score=44.28 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=31.8
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCC-CeEEEEeeccC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPS-IRVAIIEQSVS 126 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G-~~V~vlEk~~~ 126 (359)
....|+|||.|..|..+|..|++. | -+++|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCEe
Confidence 457899999999999999999999 8 57999997753
No 421
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.93 E-value=0.4 Score=44.94 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||+|..|...|..++++ |.+|+++|+..
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 599999999999999999999 99999999864
No 422
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.89 E-value=0.39 Score=45.12 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccC
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVS 126 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~ 126 (359)
.|.|||+|..|...|..+++. |.+|+++|..+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 699999999999999999999 999999998764
No 423
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.89 E-value=0.36 Score=49.00 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
...|+|+|+|++|+.++..+... |.+|+++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 46899999999999999998888 99999999875
No 424
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.86 E-value=0.34 Score=47.22 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=35.7
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccCCCCC
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGG 130 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~~GG~ 130 (359)
.+|||||||.|..-...|.+.++. |.+|+=+|++..-||.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYGg~ 46 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYGGN 46 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccCCc
Confidence 359999999999988888888898 9999999999988764
No 425
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.45 E-value=0.42 Score=44.82 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||+|..|...|..|+++ |.+|+++|++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence 589999999999999999999 99999999875
No 426
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.40 E-value=0.48 Score=46.89 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.-.|+|+|.|+.|+.+|..|... |.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence 35799999999999999999888 99999999864
No 427
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=88.98 E-value=0.5 Score=44.44 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEee
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQ 123 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk 123 (359)
.|.|||+|..|...|..|++. |.+|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence 489999999999999999999 999999988
No 428
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.92 E-value=0.53 Score=45.05 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||+|..|...|..++.. |++|+++|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999875
No 429
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.90 E-value=0.54 Score=44.09 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeec
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQS 124 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~ 124 (359)
.|.|||+|..|...|..|++. |.+|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence 489999999999999999999 9999999984
No 430
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.87 E-value=0.59 Score=43.89 Aligned_cols=33 Identities=27% Similarity=0.254 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..|.|||+|..|...|..|+++ |.+|+++|+..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 3699999999999999999999 99999999864
No 431
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.83 E-value=0.52 Score=44.26 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||+|..|...|..+++. |.+|+++|+..
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 599999999999999999999 99999999875
No 432
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.78 E-value=0.61 Score=44.99 Aligned_cols=34 Identities=24% Similarity=0.574 Sum_probs=31.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 47899999999999999999999 88 899999864
No 433
>PRK04148 hypothetical protein; Provisional
Probab=88.69 E-value=1.4 Score=36.54 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccC
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVS 126 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~ 126 (359)
..+++||.| .|...|..|++. |.+|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES-GFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC-CCEEEEEECCHH
Confidence 469999999 898889899999 999999998753
No 434
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.43 E-value=0.62 Score=44.90 Aligned_cols=34 Identities=26% Similarity=0.553 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 46899999999999999999999 87 799999875
No 435
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.40 E-value=0.69 Score=41.09 Aligned_cols=34 Identities=21% Similarity=0.536 Sum_probs=30.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
+..|+|||.|..|..+|..|++. |. +++++|...
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence 47899999999999999999999 87 799999874
No 436
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.93 E-value=0.6 Score=43.61 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||+|..|...|..+++. |.+|+++|.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCH
Confidence 599999999999999999999 99999999765
No 437
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=87.92 E-value=0.91 Score=43.45 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeeccC
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSVS 126 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~~ 126 (359)
..|.|||+|..|...|+.++.. |+ +++|+|....
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence 5799999999999999999888 85 8999998654
No 438
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.70 E-value=0.75 Score=43.69 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCC--CeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPS--IRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G--~~V~vlEk~~ 125 (359)
.|.|||+|..|..+|+.|+.. | ..+.++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCc
Confidence 589999999999999999998 7 4799999865
No 439
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=87.66 E-value=0.73 Score=41.76 Aligned_cols=34 Identities=18% Similarity=0.472 Sum_probs=30.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCe---EEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIR---VAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~---V~vlEk~~ 125 (359)
+..++|+|+|.+|..+|..|.+. |.+ +.|+++..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 35799999999999999999998 874 99999874
No 440
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.56 E-value=0.72 Score=45.13 Aligned_cols=33 Identities=30% Similarity=0.513 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCC-CeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPS-IRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~vlEk~~ 125 (359)
.+|+|||+|..|..+|..|+++ + .+|++.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCH
Confidence 3799999999999999999999 7 8999999973
No 441
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=87.54 E-value=0.71 Score=43.37 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
..|+|||+|.+|.++|+.|++. |. +|+|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCCH
Confidence 5799999999999999999998 87 799998863
No 442
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=87.34 E-value=1 Score=42.98 Aligned_cols=34 Identities=32% Similarity=0.604 Sum_probs=29.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC--eEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI--RVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~vlEk~~ 125 (359)
...|.|||+|..|..+|+.|+.. ++ .+.|+|...
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~-~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQ-GIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 46899999999999999999988 66 799999754
No 443
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.28 E-value=0.85 Score=39.53 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=28.4
Q ss_pred EEEECCChHHHHHHHHhhcCCCCe-EEEEeecc
Q 018188 94 VIVVGAGSAGLSCAYEISKNPSIR-VAIIEQSV 125 (359)
Q Consensus 94 VvIIGgG~aGl~aA~~La~~~G~~-V~vlEk~~ 125 (359)
|+|||+|..|...|..|++. |.. ++++|...
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 89999999999999999999 885 99999874
No 444
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.18 E-value=0.95 Score=37.57 Aligned_cols=32 Identities=22% Similarity=0.563 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
.|+|||.|..|...|..|++. |. +++++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCC
Confidence 389999999999999999999 87 699999774
No 445
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=86.95 E-value=0.77 Score=43.99 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||+|..|...|..|++. |.+|+++++..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence 599999999999999999999 99999999864
No 446
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=86.95 E-value=0.73 Score=38.31 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=27.4
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeeccC
Q 018188 94 VIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVS 126 (359)
Q Consensus 94 VvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~ 126 (359)
++|+|+|..+...+..+... |++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL-GFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC-TEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCcc
Confidence 58999999999999999889 999999998754
No 447
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=86.82 E-value=1.5 Score=43.12 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=34.8
Q ss_pred CCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCCC
Q 018188 184 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 243 (359)
Q Consensus 184 ~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~s 243 (359)
..||-++.+.+|..|..++..| +++ ++.+|..|..++|||...
T Consensus 269 nGGvAvl~G~kvvkid~~d~~V---~Ln--------------DG~~I~YdkcLIATG~~P 311 (659)
T KOG1346|consen 269 NGGVAVLRGRKVVKIDEEDKKV---ILN--------------DGTTIGYDKCLIATGVRP 311 (659)
T ss_pred cCceEEEeccceEEeecccCeE---Eec--------------CCcEeehhheeeecCcCc
Confidence 6789999999999997776643 454 357899999999999765
No 448
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=86.64 E-value=0.93 Score=43.03 Aligned_cols=32 Identities=19% Similarity=0.521 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
.|.|||+|..|...|+.++.. |. +|+++|...
T Consensus 3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence 589999999999999999987 65 899999854
No 449
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.59 E-value=1 Score=40.44 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCe-EEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIR-VAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~vlEk~~ 125 (359)
...|+|||+|..|..+|..|++. |.. ++++|...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 47899999999999999999999 875 99999874
No 450
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=86.56 E-value=1.2 Score=38.46 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=29.9
Q ss_pred CcccEEEECCCh-HHHHHHHHhhcCCCCeEEEEeec
Q 018188 90 ADTDVIVVGAGS-AGLSCAYEISKNPSIRVAIIEQS 124 (359)
Q Consensus 90 ~~~DVvIIGgG~-aGl~aA~~La~~~G~~V~vlEk~ 124 (359)
....|+|||+|- +|..+|..|.++ |.+|.++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence 357899999996 699999999998 9999999876
No 451
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=86.51 E-value=2.1 Score=44.03 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=38.8
Q ss_pred hCCCcEEEcceeeeeEEEeC---CEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCCC
Q 018188 183 ARPNVKLFNAVAAEDLIVKG---GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD 242 (359)
Q Consensus 183 ~~~gv~i~~~~~V~~l~~~~---~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg~ 242 (359)
+..+++++.++.|.+|+.++ ++|.+|...+ .+ .++..+++||.||+|+|+.
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d------~~---~g~~~~v~A~~vVLAagaI 278 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRD------LL---SGDRFEIKADVYVLACGAV 278 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEE------CC---CCcEEEEECCEEEEccCch
Confidence 46679999999999998864 3688886642 11 1245789999999999965
No 452
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=85.88 E-value=2.8 Score=41.74 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeEEEe-CCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCCC
Q 018188 171 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGH 241 (359)
Q Consensus 171 ~~~~~~L~~~~~~~~gv~i~~~~~V~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtGg 241 (359)
..+.+.|.+.+. +.|++|++++.|++|..+ ++++++|.+.++ .+ ....++.||.||+|+..
T Consensus 213 ~~l~~~l~~~l~-~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~------~~---~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYIT-SRGGEVRLNSRLKEIVLNEDGSVKHFVLADG------EG---QRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHH-hcCCEEeCCCeeEEEEECCCCCEEEEEEecC------CC---CceeEEECCEEEEcCCH
Confidence 345677766664 679999999999999864 455777776310 00 01127899999999873
No 453
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=85.53 E-value=1.1 Score=42.25 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCe-EEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIR-VAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~vlEk~~ 125 (359)
..++|+|+|.+|.++|+.|++. |.+ |.|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence 4699999999999999999999 886 99998863
No 454
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.52 E-value=1.1 Score=42.69 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||+|..|...|..|+++ |.+|.++.+..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-KISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-CCeEEEEecCH
Confidence 489999999999999999999 99999999854
No 455
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.47 E-value=1.1 Score=42.49 Aligned_cols=32 Identities=22% Similarity=0.475 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||+|..|...|..|++. |.+|+++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence 599999999999999999998 99999999764
No 456
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=85.45 E-value=1.1 Score=44.12 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=30.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
...|+|+|.|..|..+|..|... |.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCCh
Confidence 45899999999999999999988 99999999765
No 457
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=85.43 E-value=1.1 Score=40.59 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=29.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQS 124 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~ 124 (359)
...|+|||||.+++.=+..|.+. |.+|+|+-..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKK-GCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 45799999999999989999998 9999999654
No 458
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=85.33 E-value=1.1 Score=44.52 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..|.|||.|..|+..|..|++. |.+|+++|++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR-QKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC-CCEEEEEeCCH
Confidence 3599999999999999999999 99999999865
No 459
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=85.25 E-value=1.3 Score=40.51 Aligned_cols=34 Identities=15% Similarity=0.431 Sum_probs=29.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
...|+|||+|..|..+|..|++. |. +++++|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAA-GVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCc
Confidence 46899999999999999999999 75 688888764
No 460
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.17 E-value=1 Score=45.69 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
...|+|+|+|.+|+.++..+... |.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 36899999999999999999888 99999999874
No 461
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.91 E-value=1.2 Score=41.97 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||+|..|...|..+++. |.+|+++|+..
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 599999999999999999999 99999999875
No 462
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.66 E-value=2 Score=38.15 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=30.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeec
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQS 124 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~ 124 (359)
...++|+|.|-.|..+|..|.+. |.+|++.|++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~ 60 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN 60 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 35799999999999999999999 9999998865
No 463
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.59 E-value=1.4 Score=40.43 Aligned_cols=34 Identities=18% Similarity=0.423 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
...|+|||.|..|..+|..|++. |+ +++|+|...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 47899999999999999999999 76 688988764
No 464
>PRK08328 hypothetical protein; Provisional
Probab=84.50 E-value=1.4 Score=39.94 Aligned_cols=34 Identities=29% Similarity=0.595 Sum_probs=29.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 46899999999999999999999 76 588888664
No 465
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=84.30 E-value=1.4 Score=40.48 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=29.6
Q ss_pred CcccEEEECCChHHHHHHHHhhcCC----------CCeEEEEeecc
Q 018188 90 ADTDVIVVGAGSAGLSCAYEISKNP----------SIRVAIIEQSV 125 (359)
Q Consensus 90 ~~~DVvIIGgG~aGl~aA~~La~~~----------G~~V~vlEk~~ 125 (359)
....|+|||+|..|...+..|++.+ |.+++|+|...
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 3479999999999999999999861 23888888764
No 466
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=84.21 E-value=1.2 Score=41.97 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=27.8
Q ss_pred EEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 94 VIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 94 VvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
|.|||+|..|..+|+.++.+ ++ .|+++|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCC
Confidence 57999999999999999987 76 999999875
No 467
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.15 E-value=1.2 Score=43.02 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=25.5
Q ss_pred cEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
.|+|+|+||.||.++..+... |. +|+++|..+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCH
Confidence 599999999999997776667 64 577777764
No 468
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=83.79 E-value=1.2 Score=44.08 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||.|..|+..|..|++. |.+|+++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-CCeEEEEECCH
Confidence 489999999999999999999 99999999865
No 469
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.76 E-value=1.5 Score=43.75 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..|+|+|+|..|.++|..|++. |.+|++.|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 3589999999999999999999 99999999754
No 470
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=83.43 E-value=1.4 Score=43.02 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.+.|||.|..||..|..|++. |..|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence 589999999999999999999 99999999765
No 471
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=83.40 E-value=1.6 Score=41.33 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||+|..|...|..|++. |.+|.++++..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 599999999999999999999 99999999864
No 472
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=83.40 E-value=1.8 Score=37.89 Aligned_cols=33 Identities=21% Similarity=0.496 Sum_probs=29.2
Q ss_pred cccEEEECC-ChHHHHHHHHhhcCCCCeEEEEeec
Q 018188 91 DTDVIVVGA-GSAGLSCAYEISKNPSIRVAIIEQS 124 (359)
Q Consensus 91 ~~DVvIIGg-G~aGl~aA~~La~~~G~~V~vlEk~ 124 (359)
...++|+|| |..|..+|..|++. |.+|+++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 357999997 99999999999998 8999999775
No 473
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=83.34 E-value=1.5 Score=43.53 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=30.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
...|+|+|.|..|..+|..|... |.+|+++|..+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp 245 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDP 245 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 35799999999999999999988 99999999765
No 474
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=83.28 E-value=1.8 Score=40.90 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
...|+|||.|.+|..++..|... |.+|.++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 46899999999999999999998 99999999874
No 475
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=83.21 E-value=1.7 Score=41.18 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCC--CeEEEEeeccC
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPS--IRVAIIEQSVS 126 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G--~~V~vlEk~~~ 126 (359)
.|+|||+|.+|.++|+.|+.. | ..+.++|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcc
Confidence 489999999999999999988 7 37999998653
No 476
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.10 E-value=2 Score=42.89 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=30.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccC
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVS 126 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~ 126 (359)
..++|+|.|.+|+++|..|+++ |.+|++.|....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 4699999999999999999999 999999997653
No 477
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.06 E-value=1.7 Score=39.46 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
...|+|||.|..|..+|..|++. |. +++|+|...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCE
Confidence 36899999999999999999999 77 788998764
No 478
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.06 E-value=1.9 Score=41.21 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||+|..|...|..|++. |.+|.++++..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999864
No 479
>PRK06223 malate dehydrogenase; Reviewed
Probab=83.00 E-value=1.8 Score=40.97 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
.|.|||+|..|...|+.++.. |. .|.++|...
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence 699999999999999999987 65 899999854
No 480
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=82.97 E-value=1.8 Score=39.18 Aligned_cols=34 Identities=26% Similarity=0.567 Sum_probs=30.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
...|+|||.|..|...|..|++. |. +++|+|...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 46899999999999999999999 87 688888764
No 481
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.94 E-value=1.3 Score=47.10 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||+|..|...|..++.. |++|+++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999875
No 482
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=82.92 E-value=1.6 Score=40.69 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
..|+|+|+|.++-++++.|++. |. +|.|+.|..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~ 156 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA-GFTDGTIVARNE 156 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence 3799999999999999999998 76 599998874
No 483
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=82.90 E-value=1.5 Score=44.75 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeeccC
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVS 126 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~ 126 (359)
.|.|||+|..|...|..+++. |++|+++|+...
T Consensus 7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 599999999999999999999 999999998753
No 484
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=82.76 E-value=3.4 Score=40.22 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=35.1
Q ss_pred HHHHHHhCCCcEEEcceeeeeEEEeCCEEEEEEEceeeeeccCCCCCCCCCeEEEcCEEEEcCC
Q 018188 177 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCG 240 (359)
Q Consensus 177 L~~~~~~~~gv~i~~~~~V~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A~~VIlAtG 240 (359)
|.+.+ ++.|++|+++++|++|..+++++..+... +..++.||.||+|+-
T Consensus 203 l~~~l-~~~g~~i~~~~~V~~i~~~~~~~~~~~~~--------------~g~~~~~d~vi~a~p 251 (419)
T TIGR03467 203 ARRWL-DSRGGEVRLGTRVRSIEANAGGIRALVLS--------------GGETLPADAVVLAVP 251 (419)
T ss_pred HHHHH-HHcCCEEEcCCeeeEEEEcCCcceEEEec--------------CCccccCCEEEEcCC
Confidence 44444 35689999999999999887765433221 125689999999876
No 485
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.69 E-value=2 Score=40.70 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..|.|||+|..|...|..|+++ |.+|.+.++..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 3699999999999999999999 99999999874
No 486
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=82.53 E-value=1.9 Score=38.23 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCe-EEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIR-VAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~vlEk~~ 125 (359)
+..|+|||.|..|..+|..|++. |.+ ++++|...
T Consensus 19 ~s~VlviG~gglGsevak~L~~~-GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA-GIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCc
Confidence 37899999999999999999999 875 88998764
No 487
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=82.41 E-value=1.8 Score=40.68 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
...|+|||.|..|...|..|... |.+|++++|..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 46799999999999999999998 99999999864
No 488
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=82.29 E-value=1.7 Score=39.68 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeeccC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSVS 126 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~~ 126 (359)
+..|+|||-|.+|.+++-.|++. |+ +++|||....
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRs-Gig~itlID~D~v 65 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARS-GIGRITLIDMDDV 65 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHc-CCCeEEEEecccc
Confidence 46899999999999999999999 76 7999998763
No 489
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.27 E-value=1.4 Score=44.32 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..|.|+|.|.+|+++|..|.+. |.+|.+.|+..
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL-GAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC-CCEEEEECCCC
Confidence 3699999999999999999999 99999999764
No 490
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.23 E-value=1.6 Score=45.10 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccC
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVS 126 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~ 126 (359)
+-+++|+|.|..|...|..|.++ |.+|+++|+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCHH
Confidence 35799999999999999999999 999999999853
No 491
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.90 E-value=1.6 Score=43.39 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|+|+|+|..|...|..|.+. |.+|+++|++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence 589999999999999999998 99999999854
No 492
>PRK07774 short chain dehydrogenase; Provisional
Probab=81.81 E-value=2.5 Score=38.04 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=29.4
Q ss_pred ccEEEECC-ChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGA-GSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGg-G~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..++|.|+ |..|..+|.+|+++ |.+|+++.+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~~ 40 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE-GASVVVADINA 40 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 45999998 89999999999999 99999998763
No 493
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=81.78 E-value=1.8 Score=37.00 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=27.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..++|+|=|..|-.+|..|... |.+|+|.|..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL-GARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhC-CCEEEEEECCh
Confidence 5799999999999999999999 99999999885
No 494
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=81.69 E-value=2.2 Score=40.38 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC--eEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSI--RVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~vlEk~~ 125 (359)
..|.|||.|..|.+.|..|.+. |. +|.++++..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCH
Confidence 3699999999999999999988 74 899998864
No 495
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=81.67 E-value=1.7 Score=46.25 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 93 DVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 93 DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
.|.|||+|..|...|..++.. |++|+++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999875
No 496
>PRK07576 short chain dehydrogenase; Provisional
Probab=81.52 E-value=2.4 Score=38.78 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=29.3
Q ss_pred cccEEEECC-ChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 91 DTDVIVVGA-GSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGg-G~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
...++|.|| |..|..+|..|+++ |.+|+++.++.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~-G~~V~~~~r~~ 43 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARA-GANVAVASRSQ 43 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 357899988 78999999999999 99999998763
No 497
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=81.45 E-value=2.1 Score=43.65 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeeccC
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVS 126 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~~ 126 (359)
..|.|||+|..|...|..+++. |+.|+++|+...
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 3599999999999999999999 999999998753
No 498
>PLN02572 UDP-sulfoquinovose synthase
Probab=81.32 E-value=3.6 Score=41.13 Aligned_cols=30 Identities=37% Similarity=0.660 Sum_probs=27.6
Q ss_pred cEEEECC-ChHHHHHHHHhhcCCCCeEEEEee
Q 018188 93 DVIVVGA-GSAGLSCAYEISKNPSIRVAIIEQ 123 (359)
Q Consensus 93 DVvIIGg-G~aGl~aA~~La~~~G~~V~vlEk 123 (359)
.|+|.|| |..|...+..|.++ |.+|+++++
T Consensus 49 ~VLVTGatGfIGs~Lv~~L~~~-G~~V~~~d~ 79 (442)
T PLN02572 49 KVMVIGGDGYCGWATALHLSKR-GYEVAIVDN 79 (442)
T ss_pred EEEEECCCcHHHHHHHHHHHHC-CCeEEEEec
Confidence 5899997 99999999999999 999999875
No 499
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=81.23 E-value=2.3 Score=39.88 Aligned_cols=34 Identities=18% Similarity=0.436 Sum_probs=29.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeecc
Q 018188 91 DTDVIVVGAGSAGLSCAYEISKNPSI-RVAIIEQSV 125 (359)
Q Consensus 91 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~vlEk~~ 125 (359)
...|+|||+|.++-++++.|.+. |. +|+|+.|..
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~-G~~~i~I~nRt~ 159 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASL-GVTDITVINRNP 159 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHc-CCCeEEEEeCCH
Confidence 35799999999999999999998 76 699998763
No 500
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=81.16 E-value=2.1 Score=39.68 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeecc
Q 018188 92 TDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSV 125 (359)
Q Consensus 92 ~DVvIIGgG~aGl~aA~~La~~~G~~V~vlEk~~ 125 (359)
..++|+|+|.+|.+++..|++. |.+|.++.|..
T Consensus 118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 4799999999999999999998 89999998763
Done!