BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018190
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 105/174 (60%), Gaps = 11/174 (6%)
Query: 3 WNKASNLLFVESPAGVGWSYSNTTSD-YNCGDASTARDMHVFMMNWYEKFPEFKSRELFL 61
WNK +N+LF++SPAGVG+SY+NT+SD Y GD TA D + F+ W+E+FP +K R+ ++
Sbjct: 95 WNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYI 154
Query: 62 TGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMI 121
GESYAGHY+P+L+ ++ SK N+KG +GN L+ D +EF+W+HG++
Sbjct: 155 AGESYAGHYVPELSQLV----HRSKNPVINLKGFMVGNGLIDDYHDYVGTFEFWWNHGIV 210
Query: 122 SDEIGLTIMSDCDFDDYVSGTSHNMTNSCIEAITEANKIVGDYINNYDVILDVC 175
SD+ + C D ++ + + +C A A G+ I+ Y + VC
Sbjct: 211 SDDTYRRLKEACLHDSFI-----HPSPACDAATDVATAEQGN-IDMYSLYTPVC 258
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 105/174 (60%), Gaps = 11/174 (6%)
Query: 3 WNKASNLLFVESPAGVGWSYSNTTSD-YNCGDASTARDMHVFMMNWYEKFPEFKSRELFL 61
WNK +N+LF++SPAGVG+SY+NT+SD Y GD TA D + F+ W+E+FP +K R+ ++
Sbjct: 95 WNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYI 154
Query: 62 TGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMI 121
GESYAGHY+P+L+ ++ SK N+KG +GN L+ D +EF+W+HG++
Sbjct: 155 AGESYAGHYVPELSQLV----HRSKNPVINLKGFMVGNGLIDDYHDYVGTFEFWWNHGIV 210
Query: 122 SDEIGLTIMSDCDFDDYVSGTSHNMTNSCIEAITEANKIVGDYINNYDVILDVC 175
SD+ + C D ++ + + +C A A G+ I+ Y + VC
Sbjct: 211 SDDTYRRLKEACLHDSFI-----HPSPACDAATDVATAEQGN-IDMYSLYTPVC 258
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 105/174 (60%), Gaps = 11/174 (6%)
Query: 3 WNKASNLLFVESPAGVGWSYSNTTSD-YNCGDASTARDMHVFMMNWYEKFPEFKSRELFL 61
WNK +N+LF++SPAGVG+SY+NT+SD Y GD TA D + F+ W+E+FP +K R+ ++
Sbjct: 90 WNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYI 149
Query: 62 TGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMI 121
GESYAGHY+P+L+ ++ SK N+KG +GN L+ D +EF+W+HG++
Sbjct: 150 AGESYAGHYVPELSQLV----HRSKNPVINLKGFMVGNGLIDDYHDYVGTFEFWWNHGIV 205
Query: 122 SDEIGLTIMSDCDFDDYVSGTSHNMTNSCIEAITEANKIVGDYINNYDVILDVC 175
SD+ + C D ++ + + +C A A G+ I+ Y + VC
Sbjct: 206 SDDTYRRLKEACLHDSFI-----HPSPACDAATDVATAEQGN-IDMYSLYTPVC 253
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 105/174 (60%), Gaps = 11/174 (6%)
Query: 3 WNKASNLLFVESPAGVGWSYSNTTSD-YNCGDASTARDMHVFMMNWYEKFPEFKSRELFL 61
WNK +N+LF++SPAGVG+SY+NT+SD Y GD TA D + F+ W+E+FP +K R+ ++
Sbjct: 91 WNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYI 150
Query: 62 TGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMI 121
GESYAGHY+P+L+ ++ SK N+KG +GN L+ D +EF+W+HG++
Sbjct: 151 AGESYAGHYVPELSQLV----HRSKNPVINLKGFMVGNGLIDDYHDYVGTFEFWWNHGIV 206
Query: 122 SDEIGLTIMSDCDFDDYVSGTSHNMTNSCIEAITEANKIVGDYINNYDVILDVC 175
SD+ + C D ++ + + +C A A G+ I+ Y + VC
Sbjct: 207 SDDTYRRLKEACLHDSFI-----HPSPACDAATDVATAEQGN-IDMYSLYTPVC 254
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 186/384 (48%), Gaps = 59/384 (15%)
Query: 2 SWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKFPEFKSRELFL 61
SWN +N+L++ESPAGVG+SYS+ Y D A+ + +++ FPE+K+ +LFL
Sbjct: 88 SWNLIANVLYLESPAGVGFSYSDDKF-YATNDTEVAQSNFEALQDFFRLFPEYKNNKLFL 146
Query: 62 TGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMI 121
TGESYAG YIP LA +++ + N++G+A+GN L +Q+ ++ F + HG++
Sbjct: 147 TGESYAGIYIPTLAVLVMQDPS------MNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLL 200
Query: 122 SDEIGLTIMSDCDFDDYVSGTSHNMTN-------SCIEAITEANKIVGDY-INNYDVILD 173
+ + ++ + C S N N C+ + E +IVG+ +N Y++
Sbjct: 201 GNRLWSSLQTHC--------CSQNKCNFYDNKDLECVTNLQEVARIVGNSGLNIYNLYAP 252
Query: 174 VC----------YPTIVEQE-------LRLRKM--------ATKMSVGVDVCMTLERFFY 208
T+V Q+ L L++M K+ + T Y
Sbjct: 253 CAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTY 312
Query: 209 LNLPEVQKALHANRTNLPYGWSMCSGVLN--YSDTDSNINILPVLKRIIQNGIPVWVFSG 266
LN P V+KAL+ LP W MC+ ++N Y ++N LK + + +++G
Sbjct: 313 LNNPYVRKALNIPE-QLP-QWDMCNFLVNLQYRRLYRSMNS-QYLKLLSSQKYQILLYNG 369
Query: 267 DQDSVVPLLGSRTLIRELARDLNFEVT---VPYGAWFHKQQVGGWGTEYGNLLTFVTVRG 323
D D +G + L + + + V YG +Q+ G+ E+ + + F+T++G
Sbjct: 370 DVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGD--SGEQIAGFVKEFSH-IAFLTIKG 426
Query: 324 AAHMVPYAQPSRALHLFSSFVHGR 347
A HMVP +P A +FS F++ +
Sbjct: 427 AGHMVPTDKPLAAFTMFSRFLNKQ 450
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 104/175 (59%), Gaps = 12/175 (6%)
Query: 2 SWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKFPEFKSRELFL 61
+WNKA+N+LF ESPAGVG+SYSNT+SD + GD A+D + F++ W+E+FP + RE ++
Sbjct: 95 AWNKAANILFAESPAGVGFSYSNTSSDLSMGDDKMAQDTYTFLVKWFERFPHYNYREFYI 154
Query: 62 TGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMI 121
GES GH+IPQL+ V+ + +S N +G+ + + L +D+ ++E +W HG+I
Sbjct: 155 AGES--GHFIPQLSQVVYRNRNNSP--FINFQGLLVSSGLTNDHEDMIGMFESWWHHGLI 210
Query: 122 SDEIGLTIMSDCDFDDYVSGTSH-NMTNSCIEAITEANKIVGDYINNYDVILDVC 175
SDE + + C GTS + T C E +A G+ IN Y + C
Sbjct: 211 SDETRDSGLKVC------PGTSFMHPTPECTEVWNKALAEQGN-INPYTIYTPTC 258
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 93/157 (59%), Gaps = 9/157 (5%)
Query: 198 DVCMTLERFFYLNLPEVQKALHANRTNL-PYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 256
D C YLNLPEVQ ALHAN + + Y W++CS + + ++LPV + +IQ
Sbjct: 5 DPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQ 64
Query: 257 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFH---KQQVGGWGTEYG 313
G+ VWV+SGD DSVVP+ +R R LA L V + W+ +++VGGW +Y
Sbjct: 65 AGLRVWVYSGDTDSVVPVSSTR---RSLAA-LELPVKTSWYPWYMAPTEREVGGWSVQYE 120
Query: 314 NLLTFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLP 350
LT+VTVRGA H+VP +P++A LF F+ G +P
Sbjct: 121 G-LTYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMP 156
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 198 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 256
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 5 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 64
Query: 257 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 316
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 65 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 119
Query: 317 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNNTRPA 356
T V+VRGA H VP +P +AL LF F+ G+ +P T+ A
Sbjct: 120 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQTKNA 159
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 85/156 (54%), Gaps = 6/156 (3%)
Query: 198 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 256
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 257 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 316
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 317 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNN 352
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQ 153
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 198 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 256
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 257 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 316
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 317 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPN 351
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 152
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 198 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 256
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 257 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 316
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 317 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPN 351
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 152
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 94/169 (55%), Gaps = 22/169 (13%)
Query: 2 SWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKFPEFKSRELFL 61
SWN +N+L++ESPAGVG+SYS+ Y D A+ + +++ FPE+K+ +LFL
Sbjct: 90 SWNLIANVLYLESPAGVGFSYSDDKF-YATNDTEVAQSNFEALQDFFRLFPEYKNNKLFL 148
Query: 62 TGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMI 121
TGESYAG YIP LA +++ + N++G+A+GN L +Q+ ++ F + HG++
Sbjct: 149 TGESYAGIYIPTLAVLVMQDPS------MNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLL 202
Query: 122 SDEIGLTIMSDCDFDDYVSGTSHNMTN-------SCIEAITEANKIVGD 163
+ + ++ + C S N N C+ + E +IVG+
Sbjct: 203 GNRLWSSLQTHC--------CSQNKCNFYDNKDLECVTNLQEVARIVGN 243
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 161/376 (42%), Gaps = 72/376 (19%)
Query: 2 SWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKFPEF--KSREL 59
SWN + ++F++ P VG+SYS ++ N + +D++ F+ ++++FPE+ K ++
Sbjct: 83 SWNSNATVIFLDQPVNVGFSYSGSSGVSNT--VAAGKDVYNFLELFFDQFPEYVNKGQDF 140
Query: 60 FLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGN----PLLRLDQDVP-AIYEF 114
+ GESYAGHYIP A +L H K FN+ V IGN PL + + P A E
Sbjct: 141 HIAGESYAGHYIPVFASEILSH----KDRNFNLTSVLIGNGLTDPLTQYNYYEPMACGEG 196
Query: 115 FWSHGMISDEIG---------LTIMSDCDFDDYVSGTSHNMTNSCIEAITEANKIVGDYI 165
+ S+E L ++ C +D + T C A + G
Sbjct: 197 GEPSVLPSEECSAMEDSLERCLGLIESC-YDSQSVWSCVPATIYCNNAQLAPYQRTGR-- 253
Query: 166 NNYDVILD-----VCYPTIVEQELRLRKMATKMSVGVDVCMTLERFFYLNLPEVQKALHA 220
N YD+ D +CYPT+ + + L + K +VG +V + + N + L A
Sbjct: 254 NVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEV----DHYESCNFDINRNFLFA 309
Query: 221 NRTNLPYGWSMCSGVLNYSDTDSNINILPVLKRIIQNGIPVWVFSGDQDSVVPLLGSRTL 280
PY ++ TD ++ +P+ V++GD+D + LG++
Sbjct: 310 GDWMKPYHTAV---------TD-----------LLNQDLPILVYAGDKDFICNWLGNKAW 349
Query: 281 IRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL----------TFVTVRGAAHMVPY 330
L + E F Q+V W + + T++ V HMVP+
Sbjct: 350 TDVLPWKYDEE--------FASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPF 401
Query: 331 AQPSRALHLFSSFVHG 346
P AL + + ++HG
Sbjct: 402 DVPENALSMVNEWIHG 417
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 160/376 (42%), Gaps = 72/376 (19%)
Query: 2 SWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKFPEF--KSREL 59
SWN + ++F++ P VG+SYS ++ N + +D++ F+ ++++FPE+ K ++
Sbjct: 83 SWNSNATVIFLDQPVNVGFSYSGSSGVSNT--VAAGKDVYNFLELFFDQFPEYVNKGQDF 140
Query: 60 FLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGN----PLLRLDQDVP-AIYEF 114
+ G SYAGHYIP A +L H K FN+ V IGN PL + + P A E
Sbjct: 141 HIAGASYAGHYIPVFASEILSH----KDRNFNLTSVLIGNGLTDPLTQYNYYEPMACGEG 196
Query: 115 FWSHGMISDEIG---------LTIMSDCDFDDYVSGTSHNMTNSCIEAITEANKIVGDYI 165
+ S+E L ++ C +D + T C A + G
Sbjct: 197 GEPSVLPSEECSAMEDSLERCLGLIESC-YDSQSVWSCVPATIYCNNAQLAPYQRTGR-- 253
Query: 166 NNYDVILD-----VCYPTIVEQELRLRKMATKMSVGVDVCMTLERFFYLNLPEVQKALHA 220
N YD+ D +CYPT+ + + L + K +VG +V + + N + L A
Sbjct: 254 NVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEV----DHYESCNFDINRNFLFA 309
Query: 221 NRTNLPYGWSMCSGVLNYSDTDSNINILPVLKRIIQNGIPVWVFSGDQDSVVPLLGSRTL 280
PY ++ TD ++ +P+ V++GD+D + LG++
Sbjct: 310 GDWMKPYHTAV---------TD-----------LLNQDLPILVYAGDKDFICNWLGNKAW 349
Query: 281 IRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL----------TFVTVRGAAHMVPY 330
L + E F Q+V W + + T++ V HMVP+
Sbjct: 350 TDVLPWKYDEE--------FASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPF 401
Query: 331 AQPSRALHLFSSFVHG 346
P AL + + ++HG
Sbjct: 402 DVPENALSMVNEWIHG 417
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 160/369 (43%), Gaps = 58/369 (15%)
Query: 2 SWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHV-------FMMNWYEKFPEF 54
SW +LLF++ P G G+S + D+ F+ N+++ FPE
Sbjct: 106 SWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPED 165
Query: 55 KSRELFLTGESYAGHYIPQLADVLLDHNAHSK--GFKFNIKGVAIGNPLLRLDQDVPAIY 112
+R++ L+GESYAG YIP A+ +L+HN SK G +++K + IGN + + +
Sbjct: 166 LTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYL 225
Query: 113 EFFWSHGMISD------------EIGLTIMSDCDFDD---YVSGTSHNMTNSCIEAITEA 157
F +I + E +++ D+ + N+ N + E+
Sbjct: 226 PFAMEKKLIDESNPNFKHLTNAHENCQNLINSASTDEAAHFSYQECENILNLLLSYTRES 285
Query: 158 N-KIVGDYINNYDVILDVCYPTIVEQELRLRKMATKMSVGVDVCMTLERFFYLNLPEVQK 216
+ K D +N Y+ L YP + M+ D+ + +FF + P V
Sbjct: 286 SQKGTADCLNMYNFNLKDSYP------------SCGMNWPKDISF-VSKFF--STPGVID 330
Query: 217 ALHANRTNLPYGWSMCSGV----LNYSDTDSNINILPVLKRIIQNGIPVWVFSGDQDSVV 272
+LH + + + W C+ L+ + +I++LP L +++GI + +F+GD+D +
Sbjct: 331 SLHLDSDKIDH-WKECTNSVGTKLSNPISKPSIHLLPGL---LESGIEIVLFNGDKDLIC 386
Query: 273 PLLGSRTLIREL--ARDLNFEVTVPYGAWFHK-------QQVGGWGTEYGNLLTFVTVRG 323
G I L F W HK ++ G+ +Y LTFV+V
Sbjct: 387 NNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGY-VKYDRNLTFVSVYN 445
Query: 324 AAHMVPYAQ 332
A+HMVP+ +
Sbjct: 446 ASHMVPFDK 454
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 208 YLNLPEVQKALHANRTNLPYGWSMCSGVLN--YSDTDSNINILPVLKRIIQNGIPVWVFS 265
YLN P V+KAL+ LP W MC+ ++N Y ++N LK + + +++
Sbjct: 14 YLNNPYVRKALNIPE-QLP-QWDMCNFLVNLQYRRLYRSMNS-QYLKLLSSQKYQILLYN 70
Query: 266 GDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHK-----QQVGGWGTEYGNLLTFVT 320
GD D +G + L N ++ V W K +Q+ G+ E+ ++ F+T
Sbjct: 71 GDVDMACNFMGDEWFVDSL----NQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHI-AFLT 125
Query: 321 VRGAAHMVPYAQPSRALHLFSSFVHGR 347
++GA HMVP +P A +FS F++ +
Sbjct: 126 IKGAGHMVPTDKPLAAFTMFSRFLNKQ 152
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IPVWVFSGDQDSVVPLLGSRTLIRELAR 286
IP+WVF + D VVP+ SR L+++LA
Sbjct: 309 IPIWVFHAEDDPVVPVENSRVLVKKLAE 336
>pdb|3BWN|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWN|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWN|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWN|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWN|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 86 KGFKFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHN 145
K K + K + + + ++ LD P YE +W + D +TI CD Y S +
Sbjct: 9 KPEKISNKNIPMSDFVVNLDHGDPTAYEEYWRK--MGDRCTVTIRG-CDLMSYFS----D 61
Query: 146 MTNSC-------IEAITEANKIVGD 163
MTN C +AI + + +VG+
Sbjct: 62 MTNLCWFLEPELEDAIKDLHGVVGN 86
>pdb|3BWN|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWO|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWO|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWO|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWO|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 86 KGFKFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHN 145
K K + K + + + ++ LD P YE +W + D +TI CD Y S +
Sbjct: 9 KPEKISNKNIPMSDFVVNLDHGDPTAYEEYWRK--MGDRCTVTIRG-CDLMSYFS----D 61
Query: 146 MTNSC-------IEAITEANKIVGD 163
MTN C +AI + + +VG+
Sbjct: 62 MTNLCWFLEPELEDAIKDLHGVVGN 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,382,029
Number of Sequences: 62578
Number of extensions: 493651
Number of successful extensions: 1226
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 23
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)