Query 018191
Match_columns 359
No_of_seqs 181 out of 657
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:54:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2922 Uncharacterized conser 100.0 4.9E-73 1.1E-77 539.7 14.7 299 2-308 14-312 (335)
2 PF05653 Mg_trans_NIPA: Magnes 100.0 3.3E-66 7.2E-71 501.1 23.6 298 3-308 1-298 (300)
3 TIGR03340 phn_DUF6 phosphonate 99.2 1.7E-09 3.6E-14 103.6 21.7 254 10-300 2-281 (281)
4 PRK02971 4-amino-4-deoxy-L-ara 99.2 1.3E-10 2.9E-15 99.8 8.9 117 9-125 2-122 (129)
5 PRK11453 O-acetylserine/cystei 99.0 1.5E-07 3.1E-12 91.1 23.0 262 12-305 7-290 (299)
6 PF06027 DUF914: Eukaryotic pr 99.0 3.1E-07 6.8E-12 90.7 24.5 274 8-308 16-311 (334)
7 PRK15051 4-amino-4-deoxy-L-ara 98.8 2.2E-08 4.8E-13 83.8 9.7 103 12-124 4-108 (111)
8 TIGR00950 2A78 Carboxylate/Ami 98.8 3.8E-07 8.3E-12 85.3 19.1 203 57-297 51-259 (260)
9 PRK15430 putative chlorampheni 98.8 7.1E-07 1.5E-11 86.2 19.2 120 4-124 3-144 (296)
10 TIGR00776 RhaT RhaT L-rhamnose 98.7 1.5E-06 3.2E-11 84.2 19.9 222 53-303 56-289 (290)
11 PLN00411 nodulin MtN21 family 98.7 3E-06 6.5E-11 84.6 22.7 218 66-307 91-333 (358)
12 PRK11689 aromatic amino acid e 98.6 1.7E-05 3.7E-10 76.6 23.3 209 63-302 71-287 (295)
13 PRK11272 putative DMT superfam 98.6 3.2E-06 6.9E-11 81.4 18.0 211 58-304 74-287 (292)
14 TIGR00817 tpt Tpt phosphate/ph 98.5 5.7E-06 1.2E-10 79.8 17.5 66 57-123 70-135 (302)
15 COG0697 RhaT Permeases of the 98.5 6.2E-05 1.4E-09 70.4 24.0 211 58-303 75-288 (292)
16 PRK10532 threonine and homoser 98.5 4.4E-05 9.5E-10 73.7 22.7 256 6-304 9-283 (293)
17 COG2510 Predicted membrane pro 98.5 6.9E-07 1.5E-11 76.2 8.5 113 11-124 5-138 (140)
18 PF10639 UPF0546: Uncharacteri 98.4 4.2E-07 9.2E-12 76.3 4.7 104 21-124 8-113 (113)
19 PF13536 EmrE: Multidrug resis 98.3 5.1E-06 1.1E-10 69.1 9.5 68 59-127 41-108 (113)
20 PF06800 Sugar_transport: Suga 98.2 9.1E-05 2E-09 71.2 17.4 213 54-299 43-268 (269)
21 PTZ00343 triose or hexose phos 98.2 0.00026 5.7E-09 70.3 20.7 59 66-124 127-185 (350)
22 PF08449 UAA: UAA transporter 98.1 0.00051 1.1E-08 66.6 21.4 218 60-301 71-296 (303)
23 PRK09541 emrE multidrug efflux 98.1 2.6E-05 5.7E-10 65.3 10.0 97 15-128 8-106 (110)
24 PRK10452 multidrug efflux syst 98.1 3.8E-05 8.3E-10 65.3 11.0 75 55-129 32-107 (120)
25 PRK13499 rhamnose-proton sympo 98.1 0.00011 2.4E-09 72.9 15.8 287 3-303 1-342 (345)
26 PRK10532 threonine and homoser 98.0 2.3E-05 4.9E-10 75.6 9.6 126 7-133 146-289 (293)
27 TIGR00688 rarD rarD protein. T 97.9 0.0027 5.8E-08 59.7 19.8 62 63-124 80-141 (256)
28 TIGR00950 2A78 Carboxylate/Ami 97.7 0.00023 5E-09 66.5 10.5 115 6-120 125-259 (260)
29 PF00893 Multi_Drug_Res: Small 97.7 0.00021 4.5E-09 57.9 8.3 85 15-116 7-93 (93)
30 PLN00411 nodulin MtN21 family 97.7 0.00022 4.7E-09 71.4 10.0 124 6-130 186-333 (358)
31 PF04142 Nuc_sug_transp: Nucle 97.7 0.0034 7.4E-08 59.6 17.3 73 58-130 22-94 (244)
32 PRK10650 multidrug efflux syst 97.6 0.00095 2.1E-08 55.9 11.1 99 8-123 6-106 (109)
33 PF00892 EamA: EamA-like trans 97.5 8.5E-05 1.9E-09 60.8 4.1 69 56-124 57-125 (126)
34 PRK11689 aromatic amino acid e 97.5 0.00048 1E-08 66.5 9.1 117 8-124 155-286 (295)
35 KOG4510 Permease of the drug/m 97.4 0.00052 1.1E-08 65.6 8.2 267 9-307 38-330 (346)
36 PRK11272 putative DMT superfam 97.4 0.00068 1.5E-08 65.3 9.2 120 6-125 147-285 (292)
37 PRK11431 multidrug efflux syst 97.4 0.002 4.3E-08 53.6 9.8 91 16-123 8-100 (105)
38 COG2510 Predicted membrane pro 97.2 0.002 4.3E-08 55.3 8.8 77 212-303 63-140 (140)
39 PRK11453 O-acetylserine/cystei 97.2 0.003 6.6E-08 61.0 10.5 116 8-124 142-286 (299)
40 COG2076 EmrE Membrane transpor 97.0 0.0074 1.6E-07 50.2 9.7 72 52-123 28-101 (106)
41 TIGR03340 phn_DUF6 phosphonate 96.9 0.0012 2.6E-08 63.1 5.4 115 8-122 143-280 (281)
42 COG2962 RarD Predicted permeas 96.8 0.12 2.6E-06 50.2 17.8 122 5-126 3-145 (293)
43 COG0697 RhaT Permeases of the 96.8 0.0062 1.4E-07 56.8 8.9 117 8-125 153-287 (292)
44 PRK15051 4-amino-4-deoxy-L-ara 96.7 0.017 3.7E-07 48.2 9.9 106 178-303 5-110 (111)
45 PRK09541 emrE multidrug efflux 96.3 0.045 9.7E-07 45.8 10.0 79 210-304 27-105 (110)
46 KOG2234 Predicted UDP-galactos 96.2 0.36 7.7E-06 48.1 17.3 76 55-130 94-169 (345)
47 PRK15430 putative chlorampheni 96.1 0.0094 2E-07 57.6 5.8 63 64-126 224-286 (296)
48 PRK11431 multidrug efflux syst 95.9 0.084 1.8E-06 43.8 9.4 79 209-303 25-103 (105)
49 PRK02971 4-amino-4-deoxy-L-ara 95.7 0.062 1.3E-06 46.2 8.4 73 221-306 53-126 (129)
50 KOG2765 Predicted membrane pro 95.7 0.35 7.6E-06 48.6 14.5 66 66-131 172-237 (416)
51 PRK10452 multidrug efflux syst 95.6 0.13 2.9E-06 43.7 10.0 67 226-305 40-106 (120)
52 PRK10650 multidrug efflux syst 95.4 0.14 3E-06 42.9 9.1 77 209-301 31-107 (109)
53 TIGR00776 RhaT RhaT L-rhamnose 95.3 0.041 8.9E-07 53.2 6.6 117 7-125 150-288 (290)
54 PF06027 DUF914: Eukaryotic pr 95.3 0.088 1.9E-06 52.4 9.0 127 5-132 164-312 (334)
55 PF03151 TPT: Triose-phosphate 95.1 0.13 2.9E-06 43.9 8.7 113 10-122 1-150 (153)
56 TIGR00817 tpt Tpt phosphate/ph 94.8 0.054 1.2E-06 52.2 5.8 118 6-124 142-292 (302)
57 KOG3912 Predicted integral mem 94.7 1 2.2E-05 43.9 14.0 71 56-126 89-159 (372)
58 COG5006 rhtA Threonine/homoser 94.5 0.31 6.7E-06 46.7 9.8 124 6-130 145-287 (292)
59 PF06800 Sugar_transport: Suga 94.4 0.4 8.7E-06 46.3 10.7 86 213-308 42-128 (269)
60 COG2076 EmrE Membrane transpor 94.1 0.5 1.1E-05 39.4 9.1 78 210-303 27-104 (106)
61 PF00893 Multi_Drug_Res: Small 94.0 0.3 6.4E-06 39.4 7.6 64 210-285 26-89 (93)
62 PF13536 EmrE: Multidrug resis 93.3 1 2.2E-05 37.1 9.9 57 243-307 55-111 (113)
63 KOG1583 UDP-N-acetylglucosamin 92.3 2.9 6.3E-05 40.7 12.5 78 54-131 65-143 (330)
64 TIGR00803 nst UDP-galactose tr 92.0 0.5 1.1E-05 43.5 7.1 116 6-121 82-220 (222)
65 KOG4314 Predicted carbohydrate 91.9 5.3 0.00011 37.2 13.3 60 67-126 67-126 (290)
66 PF06379 RhaT: L-rhamnose-prot 91.5 16 0.00035 36.5 19.4 285 3-301 1-339 (344)
67 PF00892 EamA: EamA-like trans 91.5 0.27 5.8E-06 39.8 4.1 67 221-301 59-125 (126)
68 KOG4831 Unnamed protein [Funct 90.4 0.38 8.3E-06 40.1 3.9 77 47-124 46-124 (125)
69 COG1742 Uncharacterized conser 89.6 1.8 3.9E-05 35.9 7.2 48 81-129 60-107 (109)
70 KOG1441 Glucose-6-phosphate/ph 88.4 1.5 3.3E-05 43.4 7.2 62 64-125 94-155 (316)
71 PRK02237 hypothetical protein; 88.3 2.4 5.3E-05 35.4 7.2 47 82-129 62-108 (109)
72 PF10639 UPF0546: Uncharacteri 85.5 3.6 7.9E-05 34.7 7.0 51 243-299 61-111 (113)
73 KOG0569 Permease of the major 83.9 29 0.00063 36.4 14.3 32 164-195 81-112 (485)
74 PRK13499 rhamnose-proton sympo 83.7 31 0.00067 34.6 13.8 73 222-302 80-153 (345)
75 COG4975 GlcU Putative glucose 83.4 0.91 2E-05 43.4 2.7 86 210-305 53-139 (288)
76 COG4975 GlcU Putative glucose 82.8 0.78 1.7E-05 43.9 2.0 222 50-304 53-287 (288)
77 KOG1580 UDP-galactose transpor 81.6 52 0.0011 31.7 13.5 210 55-298 87-309 (337)
78 PTZ00343 triose or hexose phos 81.5 3.7 8E-05 40.8 6.4 52 72-123 295-346 (350)
79 PF02694 UPF0060: Uncharacteri 80.5 2.3 5.1E-05 35.4 3.8 45 83-128 61-105 (107)
80 PF04142 Nuc_sug_transp: Nucle 76.8 21 0.00045 33.8 9.7 111 5-115 110-243 (244)
81 PF08449 UAA: UAA transporter 76.5 15 0.00032 35.5 8.8 115 8-123 153-295 (303)
82 KOG2766 Predicted membrane pro 73.7 1.4 3E-05 42.5 0.7 63 71-133 96-158 (336)
83 COG5006 rhtA Threonine/homoser 72.3 99 0.0021 30.1 16.8 55 243-301 230-284 (292)
84 TIGR00803 nst UDP-galactose tr 72.0 41 0.0009 30.7 10.2 56 229-298 165-220 (222)
85 PF15048 OSTbeta: Organic solu 70.4 4.7 0.0001 34.5 3.2 42 266-307 20-61 (125)
86 PF07857 DUF1632: CEO family ( 70.0 17 0.00037 34.9 7.3 50 257-307 85-139 (254)
87 PF01306 LacY_symp: LacY proto 68.1 57 0.0012 33.5 11.1 73 85-157 146-231 (412)
88 COG3169 Uncharacterized protei 62.3 8.4 0.00018 31.8 3.0 107 3-123 4-113 (116)
89 PF04342 DUF486: Protein of un 60.6 7.7 0.00017 32.3 2.5 36 87-122 70-105 (108)
90 KOG2765 Predicted membrane pro 60.2 22 0.00048 36.1 6.1 123 6-128 244-393 (416)
91 COG2271 UhpC Sugar phosphate p 59.8 1.9E+02 0.0041 30.1 12.8 29 280-308 183-211 (448)
92 PF04657 DUF606: Protein of un 58.9 30 0.00066 29.8 6.1 66 57-122 68-138 (138)
93 PF05653 Mg_trans_NIPA: Magnes 57.3 43 0.00094 32.7 7.6 58 243-307 70-127 (300)
94 PF11970 Git3_C: G protein-cou 56.3 19 0.0004 28.2 4.0 51 248-298 12-62 (76)
95 COG4858 Uncharacterized membra 52.9 1.1E+02 0.0023 28.4 8.7 57 52-108 157-219 (226)
96 TIGR00881 2A0104 phosphoglycer 51.5 2.1E+02 0.0046 26.8 12.1 20 164-183 51-70 (379)
97 KOG4510 Permease of the drug/m 48.7 50 0.0011 32.4 6.2 52 243-304 120-171 (346)
98 COG2962 RarD Predicted permeas 45.8 1.2E+02 0.0026 29.8 8.4 71 210-290 66-136 (293)
99 PF06570 DUF1129: Protein of u 42.8 1.4E+02 0.003 27.3 8.2 56 53-108 143-204 (206)
100 KOG1581 UDP-galactose transpor 42.8 1.9E+02 0.0042 28.7 9.4 67 64-130 94-160 (327)
101 KOG1442 GDP-fucose transporter 40.0 5.8 0.00013 38.7 -1.4 58 64-121 113-170 (347)
102 KOG1443 Predicted integral mem 40.0 4E+02 0.0086 26.7 13.1 60 67-126 98-157 (349)
103 PF06609 TRI12: Fungal trichot 40.0 5.1E+02 0.011 28.1 12.9 13 56-68 111-123 (599)
104 PF06966 DUF1295: Protein of u 34.8 2.5E+02 0.0054 26.3 8.7 59 8-67 122-186 (235)
105 PRK02983 lysS lysyl-tRNA synth 33.5 6.8E+02 0.015 29.2 13.4 24 52-75 74-97 (1094)
106 PF06157 DUF973: Protein of un 30.3 5.3E+02 0.011 25.2 11.9 61 7-71 45-105 (285)
107 TIGR00893 2A0114 d-galactonate 29.9 4.6E+02 0.01 24.4 10.6 17 164-180 50-66 (399)
108 KOG1441 Glucose-6-phosphate/ph 28.5 32 0.00069 34.1 1.6 30 5-34 159-188 (316)
109 PF04531 Phage_holin_1: Bacter 26.9 3.2E+02 0.0069 21.6 7.6 22 50-71 7-28 (84)
110 KOG1580 UDP-galactose transpor 26.4 56 0.0012 31.4 2.7 39 90-128 278-316 (337)
111 COG5522 Predicted integral mem 25.8 4.8E+02 0.01 24.6 8.5 53 65-117 102-163 (236)
112 PRK09917 hypothetical protein; 25.7 4.7E+02 0.01 23.1 8.7 40 83-122 63-102 (157)
113 PF00909 Ammonium_transp: Ammo 23.7 4.6E+02 0.01 26.5 9.0 32 243-274 298-329 (399)
114 PF13347 MFS_2: MFS/sugar tran 22.2 4.6E+02 0.01 26.0 8.6 26 280-305 175-200 (428)
115 PF07457 DUF1516: Protein of u 22.1 3.8E+02 0.0081 22.4 6.6 47 262-308 44-91 (110)
116 PF11712 Vma12: Endoplasmic re 21.9 3E+02 0.0065 23.6 6.3 61 133-194 65-127 (142)
117 PLN00028 nitrate transmembrane 21.3 8.7E+02 0.019 24.6 10.9 50 252-303 384-433 (476)
118 PF08173 YbgT_YccB: Membrane b 20.5 1.6E+02 0.0034 18.8 3.0 21 5-25 4-24 (28)
119 PF03601 Cons_hypoth698: Conse 20.1 8.3E+02 0.018 23.9 14.7 76 53-128 59-135 (305)
No 1
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.9e-73 Score=539.70 Aligned_cols=299 Identities=68% Similarity=1.154 Sum_probs=293.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhchhhh
Q 018191 2 AFSKDNLKGFVLALLSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFTYLLEPLWWVGMAIMIVGEVANFVAYAFAPAVL 81 (359)
Q Consensus 2 ~~~~~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~~g~~~~~~l~~p~W~~G~~l~~~g~~~~~~Al~~ap~sl 81 (359)
.|++||++|+++|+.||++++.++++|||+++|.+.. +.|++.++++|+++|+||+|+++|++|+++||+||+|||+++
T Consensus 14 ~~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~-~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasL 92 (335)
T KOG2922|consen 14 RMSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGAS-GLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASL 92 (335)
T ss_pred hhccCceeeeeehhhccEEEeeehhhhHHHHHHHhhh-cccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhh
Confidence 3789999999999999999999999999999999885 889998999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCCCCCCHHHHHHHhcChhHHHHHHHHHHHHHH
Q 018191 82 VTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQESPITSVQEIWSLATQPAFLLYVASVIVLVFI 161 (359)
Q Consensus 82 v~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~~~~s~~el~~~~~~~~fl~y~~~~~~~~~~ 161 (359)
|+||||+++++|+++|+++||||++..+.+||++|++|++++|.|+|++++..|++|+|+++++|+|+.|+.+.++++++
T Consensus 93 VtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~i 172 (335)
T KOG2922|consen 93 VTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIVLI 172 (335)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred HHHhhcccCCCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhccchhhhh
Q 018191 162 LIFHFAPRCGNTNALVFIGICSLMGSLSVMSVKALGTSLKLTFEGKNQLLYPDTWFFMLVVAICVIMQMNYLNKESQMML 241 (359)
Q Consensus 162 li~~~~~r~g~~~~~~y~~i~gl~g~~tvl~~K~v~~~l~~~~~g~~~~~~~~ty~~l~~~v~~~l~Q~~~ln~~~~~~~ 241 (359)
++++++||+|++|+++|+++|+++|++||+++|++++++|++++|+||+.+|+||+++++++.|+.+|++||||
T Consensus 173 l~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNk------ 246 (335)
T KOG2922|consen 173 LIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNK------ 246 (335)
T ss_pred HheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhcccCCCCC
Q 018191 242 QALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTTKDFER 308 (359)
Q Consensus 242 ~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~~~~~~ 308 (359)
||++||+++|.|+||++||+++|++|.|+|+||++++..++.+++||+.+++.|+++|+++||++.
T Consensus 247 -AL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~ 312 (335)
T KOG2922|consen 247 -ALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEI 312 (335)
T ss_pred -HHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999886
No 2
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=3.3e-66 Score=501.06 Aligned_cols=298 Identities=47% Similarity=0.873 Sum_probs=285.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhchhhhh
Q 018191 3 FSKDNLKGFVLALLSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFTYLLEPLWWVGMAIMIVGEVANFVAYAFAPAVLV 82 (359)
Q Consensus 3 ~~~~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~~g~~~~~~l~~p~W~~G~~l~~~g~~~~~~Al~~ap~slv 82 (359)
|-+|+++|+.+|++||+++++|.++|||+++|.++. +.|++.+.++|++||+||+|++++++|+++|++||+|+|+++|
T Consensus 1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~-~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv 79 (300)
T PF05653_consen 1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRG-SLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLV 79 (300)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHH
Confidence 568999999999999999999999999999998874 5666556779999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCCCCCCHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 018191 83 TPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQESPITSVQEIWSLATQPAFLLYVASVIVLVFIL 162 (359)
Q Consensus 83 ~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~~~~s~~el~~~~~~~~fl~y~~~~~~~~~~l 162 (359)
||++++++++|+++|+++||||++++|++|++++++|+++++.++|++++.+|++|+++++++|+|+.|+.+..++.+++
T Consensus 80 ~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L 159 (300)
T PF05653_consen 80 APLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILIL 159 (300)
T ss_pred HHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888877777
Q ss_pred HHhhcccCCCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhccchhhhhh
Q 018191 163 IFHFAPRCGNTNALVFIGICSLMGSLSVMSVKALGTSLKLTFEGKNQLLYPDTWFFMLVVAICVIMQMNYLNKESQMMLQ 242 (359)
Q Consensus 163 i~~~~~r~g~~~~~~y~~i~gl~g~~tvl~~K~v~~~l~~~~~g~~~~~~~~ty~~l~~~v~~~l~Q~~~ln~~~~~~~~ 242 (359)
+++.+||+|++++++|.++||++|++|++++|+++..++.+++|+|||.+|.+|+++++++.|++.|++||||
T Consensus 160 ~~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~------- 232 (300)
T PF05653_consen 160 IFFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNK------- 232 (300)
T ss_pred HHhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 7888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhcccCCCCC
Q 018191 243 ALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTTKDFER 308 (359)
Q Consensus 243 AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~~~~~~ 308 (359)
||++||+++++|+|||+||++++++|.++||||++++++++.++.+|+.+++.||++|+++||.++
T Consensus 233 aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~ 298 (300)
T PF05653_consen 233 ALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEI 298 (300)
T ss_pred HHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhc
Confidence 999999999999999999999999999999999999999999999999999999999999999875
No 3
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.24 E-value=1.7e-09 Score=103.57 Aligned_cols=254 Identities=15% Similarity=0.165 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhhcC-----------c----c-cCCcccccccchhH---HHHHHHHHHHHHHH
Q 018191 10 GFVLALLSSFFIGSSFIIKKKGLRRAAAASG-----------V----R-AGVGGFTYLLEPLW---WVGMAIMIVGEVAN 70 (359)
Q Consensus 10 Gv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~-----------~----~-~g~~~~~~l~~p~W---~~G~~l~~~g~~~~ 70 (359)
.+++.+.++++.+..+++.|+...++..... + + .+ ..++..++..| ..+.........+.
T Consensus 2 ~~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQ-VGWSRLPATFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhccc-CCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999976543221000 0 0 00 00111111122 12333345566788
Q ss_pred HHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCCCCCCHHHHHHHhcChhHHH
Q 018191 71 FVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQESPITSVQEIWSLATQPAFLL 150 (359)
Q Consensus 71 ~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~~~~s~~el~~~~~~~~fl~ 150 (359)
..++...|.+.++|+...+.++..+++.+++|||+++++|+|+.++..|+.++... +.+ ..+ +....
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~--~~~-~~~----------~~g~~ 147 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS--RFA-QHR----------RKAYA 147 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc--ccc-ccc----------hhHHH
Confidence 88999999999999999999999999999999999999999999999999977532 211 111 11111
Q ss_pred HHHHHHHHHHHHHHh-hcccCCC-----chhHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCcc-ccchHHHHHHHHHH
Q 018191 151 YVASVIVLVFILIFH-FAPRCGN-----TNALVFIGICSLMGSLSVMSVKALGTSLKLTFEGKNQ-LLYPDTWFFMLVVA 223 (359)
Q Consensus 151 y~~~~~~~~~~li~~-~~~r~g~-----~~~~~y~~i~gl~g~~tvl~~K~v~~~l~~~~~g~~~-~~~~~ty~~l~~~v 223 (359)
+... ..++..++. ..+|..+ .....+..++.++++.-... -. . ..++... ...+..+.++....
T Consensus 148 ~~l~--aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~--~~~~~~~~~~~~~~~~~~~~~~ 218 (281)
T TIGR03340 148 WALA--AALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLL----LY-L--KRHGRSMFPYARQILPSATLGG 218 (281)
T ss_pred HHHH--HHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHH----HH-H--HHhccchhhhHHHHHHHHHHHH
Confidence 2111 111111121 2222211 11111222222222111000 00 0 0111111 11222233333333
Q ss_pred HHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 018191 224 ICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILL 300 (359)
Q Consensus 224 ~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lL 300 (359)
.+...-....++ ++++.+++.+.+..|. .++++++.|.++++|..+ + ....|.++++.|+++|
T Consensus 219 ~~s~l~~~l~~~-------al~~~~a~~~~~~~~l-~pv~a~l~g~~~lgE~~~--~----~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 219 LMIGGAYALVLW-------AMTRLPVATVVALRNT-SIVFAVVLGIWFLNERWY--L----TRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHH-------HHhhCCceEEEeeccc-HHHHHHHHHHHHhCCCcc--H----HHHHHHHHHHHhHHhC
Confidence 333344456678 9999999999998876 589999999999999654 3 2456777788888764
No 4
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.16 E-value=1.3e-10 Score=99.81 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccccccch--hHHHHHHHHHHHHHHHHHHHhhchhhhhhchh
Q 018191 9 KGFVLALLSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFTYLLEP--LWWVGMAIMIVGEVANFVAYAFAPAVLVTPLG 86 (359)
Q Consensus 9 iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~~g~~~~~~l~~p--~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~ 86 (359)
+|.++.+.+.++.+.|+++.|+|..+.++.+.............+| +-+.|++++++++..+..++...|++...|+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~ 81 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL 81 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 4678889999999999999999988765331111000011234567 78899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH--HhcCCCCccchhhHHHHhhhhheeee
Q 018191 87 ALSIIVSAVLAHF--ILHEKLPQLGILGCVMCIAGSIIIVI 125 (359)
Q Consensus 87 a~~li~~~ila~~--~L~e~l~~~~~~G~~li~~G~~liv~ 125 (359)
+..+++..+++.. ++||+++..+++|++++++|+.++..
T Consensus 82 sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999888888885 89999999999999999999998753
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.99 E-value=1.5e-07 Score=91.07 Aligned_cols=262 Identities=16% Similarity=0.246 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhhc--Cccc---CCcccccc---cch---hHHHHHHHHHHHHHHHHHHHhh-chh
Q 018191 12 VLALLSSFFIGSSFIIKKKGLRRAAAAS--GVRA---GVGGFTYL---LEP---LWWVGMAIMIVGEVANFVAYAF-APA 79 (359)
Q Consensus 12 ~LAl~ss~~~a~G~vlqk~~~~~~~~~~--~~~~---g~~~~~~l---~~p---~W~~G~~l~~~g~~~~~~Al~~-ap~ 79 (359)
.+++.++++-+.....-|.+..+.+... ..|- +....... +.+ ....|+........+.+.++.+ .|.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a 86 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA 86 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 4567778888888888887654321100 0110 00000011 111 1112332223333455666666 577
Q ss_pred hhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCCCCCCHHHHHHHhcChhHHHHHHHHHHH-
Q 018191 80 VLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQESPITSVQEIWSLATQPAFLLYVASVIVL- 158 (359)
Q Consensus 80 slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~~~~s~~el~~~~~~~~fl~y~~~~~~~- 158 (359)
....-+....-+++.+++++++|||+++++++|+++.++|+.++.... .++...+. .+ ..+.....+.
T Consensus 87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~-~~~~~~~~---------~G-~~l~l~aal~~ 155 (299)
T PRK11453 87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDS-LNGQHVAM---------LG-FMLTLAAAFSW 155 (299)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcccc-CCCcchhH---------HH-HHHHHHHHHHH
Confidence 788878888889999999999999999999999999999998876321 11111110 01 1111111111
Q ss_pred HHH--HHHhhcccCCCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCc------cccchHHHHH-HHHHHHHHHHH
Q 018191 159 VFI--LIFHFAPRCGNTNALVFIGICSLMGSLSVMSVKALGTSLKLTFEGKN------QLLYPDTWFF-MLVVAICVIMQ 229 (359)
Q Consensus 159 ~~~--li~~~~~r~g~~~~~~y~~i~gl~g~~tvl~~K~v~~~l~~~~~g~~------~~~~~~ty~~-l~~~v~~~l~Q 229 (359)
.+. +.-+..++.+......+......++..-.. ..+. ..++.+ ...++..|.. +...+.+...+
T Consensus 156 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~ 228 (299)
T PRK11453 156 ACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFF---VASL----ILDGSATMIHSLVTIDMTTILSLMYLAFVATIVG 228 (299)
T ss_pred HHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHH---HHHH----HhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHH
Confidence 111 101111111111122222222222211100 0000 011111 1123333433 34445667777
Q ss_pred HHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhcccCC
Q 018191 230 MNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTTKD 305 (359)
Q Consensus 230 ~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~~~ 305 (359)
....++ ++++.++..+.++ ....++++++.|.++++|... +. ..+|.+++++|+++....+.
T Consensus 229 ~~l~~~-------~l~~~~a~~~s~~-~~l~Pv~a~~~~~l~lgE~~~--~~----~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 229 YGIWGT-------LLGRYETWRVAPL-SLLVPVVGLASAALLLDERLT--GL----QFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHH-------HHHhCCHHHHHHH-HHHHHHHHHHHHHHHhCCCcc--HH----HHHHHHHHHHHHHHHhcchh
Confidence 777888 9999998887775 458899999999999999643 33 45777888888887665443
No 6
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.96 E-value=3.1e-07 Score=90.73 Aligned_cols=274 Identities=17% Similarity=0.249 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH----Hhhh---------hc--CcccCC-cccccccchhHHHHH--HHHHHHHHH
Q 018191 8 LKGFVLALLSSFFIGSSFIIKKKGLR----RAAA---------AS--GVRAGV-GGFTYLLEPLWWVGM--AIMIVGEVA 69 (359)
Q Consensus 8 ~iGv~LAl~ss~~~a~G~vlqk~~~~----~~~~---------~~--~~~~g~-~~~~~l~~p~W~~G~--~l~~~g~~~ 69 (359)
.+|=++|++-+.....+.-+.+++.. |.-- .+ --|.+. +..+.+++|+|.-=+ ++++.++..
T Consensus 16 ~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~ 95 (334)
T PF06027_consen 16 LLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYL 95 (334)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHH
Confidence 35666777766666666666665322 1000 00 011111 122334555554332 344678889
Q ss_pred HHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCCCCC-CHHHHHHHhcChhH
Q 018191 70 NFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQESPIT-SVQEIWSLATQPAF 148 (359)
Q Consensus 70 ~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~~~~-s~~el~~~~~~~~f 148 (359)
...||.+-+.+-+|=|.+.+++++++++.++||||.++.+++|+++|++|+++++......++.. +.+ +| .
T Consensus 96 ~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~-------~~-i 167 (334)
T PF06027_consen 96 VVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGS-------NP-I 167 (334)
T ss_pred HHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCC-------cc-c
Confidence 99999999999999999999999999999999999999999999999999998876642222111 100 01 0
Q ss_pred HHHHHHHHHHHHHHHHh-hccc-CCCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCccc-cchHHHHHHHHHHHH
Q 018191 149 LLYVASVIVLVFILIFH-FAPR-CGNTNALVFIGICSLMGSLSVMSVKALGTSLKLTFEGKNQL-LYPDTWFFMLVVAIC 225 (359)
Q Consensus 149 l~y~~~~~~~~~~li~~-~~~r-~g~~~~~~y~~i~gl~g~~tvl~~K~v~~~l~~~~~g~~~~-~~~~ty~~l~~~v~~ 225 (359)
+.=+.+....++..+.- ..++ -.+.+...+.+.-|++|.+-.. ..... ...++-..+ -++....+++....+
T Consensus 168 ~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~-iq~~i----le~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 168 LGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISG-IQLAI----LERSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH-HHHHh----eehhhhhccCCChhhHHHHHHHHHH
Confidence 00011111111111111 1111 1122234444555555543111 11111 001121111 134444443333333
Q ss_pred HHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhcccCC
Q 018191 226 VIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTTKD 305 (359)
Q Consensus 226 ~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~~~ 305 (359)
...=-...+- .++..+++.+.- ---.-..-+++.++.+|++.. ++ +...|+++++.|.++.+..+.
T Consensus 243 lf~~y~l~p~-------~l~~ssAt~~nL-sLLTsd~~ali~~i~~f~~~~--~~----ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 243 LFLFYSLVPI-------VLRMSSATFFNL-SLLTSDFYALIIDIFFFGYKF--SW----LYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHHHHHHHH-------HHHhCccceeeh-HHHHhhHHHHHHHHHhcCccc--cH----HHHHHHHHHHHHhheEEccCC
Confidence 2221122233 566677765433 333444558899999999843 33 467889999999999887765
Q ss_pred CCC
Q 018191 306 FER 308 (359)
Q Consensus 306 ~~~ 308 (359)
+++
T Consensus 309 ~~~ 311 (334)
T PF06027_consen 309 PEE 311 (334)
T ss_pred ccc
Confidence 543
No 7
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.84 E-value=2.2e-08 Score=83.82 Aligned_cols=103 Identities=18% Similarity=0.281 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccccccchhHHHHH--HHHHHHHHHHHHHHhhchhhhhhchhhHH
Q 018191 12 VLALLSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFTYLLEPLWWVGM--AIMIVGEVANFVAYAFAPAVLVTPLGALS 89 (359)
Q Consensus 12 ~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~~g~~~~~~l~~p~W~~G~--~l~~~g~~~~~~Al~~ap~slv~Pl~a~~ 89 (359)
++-+.|.++...|+++.|++.++.+. + .-..++.++.+. ..+.+++.++..++...|++..+|+.+++
T Consensus 4 ~~l~~ai~~ev~g~~~lK~s~~~~~~------~----~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~ 73 (111)
T PRK15051 4 LTLVFASLLSVAGQLCQKQATRPVAI------G----KRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLN 73 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCc------c----hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHH
Confidence 34566778888999999997432211 0 001133445555 66788999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccchhhHHHHhhhhheee
Q 018191 90 IIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIV 124 (359)
Q Consensus 90 li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv 124 (359)
++++.+++.+++|||++.++++|+.++++|++++.
T Consensus 74 ~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 74 FVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998764
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.83 E-value=3.8e-07 Score=85.31 Aligned_cols=203 Identities=18% Similarity=0.170 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCCCCCCH
Q 018191 57 WVGMAIMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQESPITSV 136 (359)
Q Consensus 57 ~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~~~~s~ 136 (359)
..|.+...+...+.+.|+.+.|.+...++..+.-+++.+++.+++|||+++++++|+.+.++|+.++...+ +.+. +
T Consensus 51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~--~~~~-~- 126 (260)
T TIGR00950 51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG--NLSI-N- 126 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC--cccc-c-
Confidence 55666677888899999999999999999999999999999999999999999999999999999876432 1111 1
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHH-hhccc----CCCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCcccc
Q 018191 137 QEIWSLATQPAFLLYVASVIVLVFILIF-HFAPR----CGNTNALVFIGICSLMGSLSVMSVKALGTSLKLTFEGKNQLL 211 (359)
Q Consensus 137 ~el~~~~~~~~fl~y~~~~~~~~~~li~-~~~~r----~g~~~~~~y~~i~gl~g~~tvl~~K~v~~~l~~~~~g~~~~~ 211 (359)
..-..+..+..+ +.-.+ ...++ .+......+. ....+++.- +..- ....+.+...
T Consensus 127 ---------~~G~~~~l~a~~--~~a~~~~~~k~~~~~~~~~~~~~~~-~~~~~~~~~-l~~~-------~~~~~~~~~~ 186 (260)
T TIGR00950 127 ---------PAGLLLGLGSGI--SFALGTVLYKRLVKKEGPELLQFTG-WVLLLGALL-LLPF-------AWFLGPNPQA 186 (260)
T ss_pred ---------HHHHHHHHHHHH--HHHHHHHHHhHHhhcCCchHHHHHH-HHHHHHHHH-HHHH-------HHhcCCCCCc
Confidence 101111111111 11111 11122 1111112221 111222111 1100 0112222222
Q ss_pred chHHHHH-HHHHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Q 018191 212 YPDTWFF-MLVVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGF 290 (359)
Q Consensus 212 ~~~ty~~-l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~ 290 (359)
++..|.. +...+.+........++ |+++.+++.+..+.+ ..++.+++.+.++++|.. ++. ...|.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~-------a~~~~~~~~~s~~~~-~~pv~~~ll~~~~~~E~~--~~~----~~~G~ 252 (260)
T TIGR00950 187 LSLQWGALLYLGLIGTALAYFLWNK-------GLTLVDPSAASILAL-AEPLVALLLGLLILGETL--SLP----QLIGG 252 (260)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCCchHHHHHHH-HHHHHHHHHHHHHhCCCC--CHH----HHHHH
Confidence 4555543 33333333334445578 999999888777655 789999999999999954 444 34566
Q ss_pred HHHHHhh
Q 018191 291 VVVLSGT 297 (359)
Q Consensus 291 ~~~~~Gv 297 (359)
++++.|+
T Consensus 253 ~li~~g~ 259 (260)
T TIGR00950 253 ALIIAAV 259 (260)
T ss_pred HHHHHhc
Confidence 6666664
No 9
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.77 E-value=7.1e-07 Score=86.22 Aligned_cols=120 Identities=18% Similarity=0.111 Sum_probs=88.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhc--C---------------cccCC-cccccccchhH----HHHHH
Q 018191 4 SKDNLKGFVLALLSSFFIGSSFIIKKKGLRRAAAAS--G---------------VRAGV-GGFTYLLEPLW----WVGMA 61 (359)
Q Consensus 4 ~~~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~--~---------------~~~g~-~~~~~l~~p~W----~~G~~ 61 (359)
|+++..|.++++.++++.+...+.-|... +.+... - .+.+. ..++..+++++ ..|..
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLIY-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 45778999999999999998888887531 100000 0 00000 00011122332 25556
Q ss_pred HHHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheee
Q 018191 62 IMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIV 124 (359)
Q Consensus 62 l~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv 124 (359)
...+...+.+.++...|.+...-+....-++..+++.+++|||+++++|.|+++..+|+.++.
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 667788899999999999999999999999999999999999999999999999999999875
No 10
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.73 E-value=1.5e-06 Score=84.15 Aligned_cols=222 Identities=10% Similarity=0.159 Sum_probs=138.5
Q ss_pred chhHHHHHHH---HHHHHHHHHHHHhhchhhhhhchhh-HHHHHHHHHHHHHhcCCCCccc----hhhHHHHhhhhheee
Q 018191 53 EPLWWVGMAI---MIVGEVANFVAYAFAPAVLVTPLGA-LSIIVSAVLAHFILHEKLPQLG----ILGCVMCIAGSIIIV 124 (359)
Q Consensus 53 ~p~W~~G~~l---~~~g~~~~~~Al~~ap~slv~Pl~a-~~li~~~ila~~~L~e~l~~~~----~~G~~li~~G~~liv 124 (359)
...|..|++. ...|++..+.|.....+++-.|+.. ++++++.+.+.+++||+.++++ ++|++++++|+.++.
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 3445557776 8899999999999999999999999 9999999999999999999999 999999999988876
Q ss_pred eecCCCCCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHhhccc---CCCchhHHHHHHHH-hhhhHHHHHHHHHHHHH
Q 018191 125 IHAPQESPITSVQEIWSLATQPAFLLYVASVIVLVFILIFHFAPR---CGNTNALVFIGICS-LMGSLSVMSVKALGTSL 200 (359)
Q Consensus 125 ~~a~~~~~~~s~~el~~~~~~~~fl~y~~~~~~~~~~li~~~~~r---~g~~~~~~y~~i~g-l~g~~tvl~~K~v~~~l 200 (359)
...+++.+. ++.. ..+.-+.+..+..+. ...+...+| ++..... +.-..| .+++..... .-.
T Consensus 136 ~~~~~~~~~---~~~~---~~~~Gi~~~l~sg~~--y~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~-~~~---- 201 (290)
T TIGR00776 136 RSKDKSAGI---KSEF---NFKKGILLLLMSTIG--YLVYVVVAKAFGVDGLSVL-LPQAIGMVIGGIIFNL-GHI---- 201 (290)
T ss_pred ecccccccc---cccc---chhhHHHHHHHHHHH--HHHHHHHHHHcCCCcceeh-hHHHHHHHHHHHHHHH-HHh----
Confidence 553222110 0100 012223333222221 111112222 1111111 111222 223322221 110
Q ss_pred HHhhcCCccccchHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCH
Q 018191 201 KLTFEGKNQLLYPDTWFFMLVVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTA 280 (359)
Q Consensus 201 ~~~~~g~~~~~~~~ty~~l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~ 280 (359)
+ . ........|..++.++.. ..+..+... ++++.......++.....++.+.+.|+.+++|.. ++
T Consensus 202 ~---~--~~~~~~~~~~~~~~Gi~~-~ia~~~y~~-------~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~--~~ 266 (290)
T TIGR00776 202 L---A--KPLKKYAILLNILPGLMW-GIGNFFYLF-------SAQPKVGVATSFSLSQLGVIISTLGGILILGEKK--TK 266 (290)
T ss_pred c---c--cchHHHHHHHHHHHHHHH-HHHHHHHHH-------HcccccchhhHHHHHHHHHHHHHHHHHHHhccCC--Cc
Confidence 0 1 112233334444455554 555544556 7774444455666667779999999999999976 46
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc
Q 018191 281 ASIISEICGFVVVLSGTILLHTT 303 (359)
Q Consensus 281 ~~~~~~~~G~~~~~~Gv~lLs~~ 303 (359)
.++....+|+++++.|+++.+-.
T Consensus 267 ~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 267 REMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred ceeehhHHHHHHHHHHHHHHhcc
Confidence 78889999999999999988654
No 11
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.73 E-value=3e-06 Score=84.60 Aligned_cols=218 Identities=11% Similarity=0.172 Sum_probs=119.1
Q ss_pred HHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHH------hcCCCCccchhhHHHHhhhhheeeeecCCCC------CC
Q 018191 66 GEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFI------LHEKLPQLGILGCVMCIAGSIIIVIHAPQES------PI 133 (359)
Q Consensus 66 g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~------L~e~l~~~~~~G~~li~~G~~liv~~a~~~~------~~ 133 (359)
.+.+.+.++.+.|.+...=+..+.-++++++++++ +|||+++++++|++++.+|+.++........ ..
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 33467889999999999999999999999999999 6999999999999999999987754322110 00
Q ss_pred CCHHHHH--HHhcChhHHHHHHHH-HHHHHHHHH-hhcc----cCCCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHhhc
Q 018191 134 TSVQEIW--SLATQPAFLLYVASV-IVLVFILIF-HFAP----RCGNTNALVFIGICSLMGSLSVMSVKALGTSLKLTFE 205 (359)
Q Consensus 134 ~s~~el~--~~~~~~~fl~y~~~~-~~~~~~li~-~~~~----r~g~~~~~~y~~i~gl~g~~tvl~~K~v~~~l~~~~~ 205 (359)
.+..+.. ....+...+.-..+. ...++.-++ ...+ +++. ...+.....++++.-... .+. ..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~--~~~~t~~~~~~~~~~~~~---~~l----~~~ 241 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA--AFTVSFLYTVCVSIVTSM---IGL----VVE 241 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHHHHH---HHH----HHc
Confidence 0000000 000001111111111 111111111 1112 2222 112222222222221111 110 111
Q ss_pred CC--c-cccch--HHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCH
Q 018191 206 GK--N-QLLYP--DTWFFMLVVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTA 280 (359)
Q Consensus 206 g~--~-~~~~~--~ty~~l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~ 280 (359)
+. + ....| ..+.++..++.+.+ -....|+ ++++.+++.+ .++.-..++++++.|.++++|... +
T Consensus 242 ~~~~~~~~~~~~~~~~~i~y~~i~t~l-ay~lw~~-------~v~~~ga~~a-s~~~~L~PV~a~llg~l~LgE~lt--~ 310 (358)
T PLN00411 242 KNNPSVWIIHFDITLITIVTMAIITSV-YYVIHSW-------TVRHKGPLYL-AIFKPLSILIAVVMGAIFLNDSLY--L 310 (358)
T ss_pred cCCcccceeccchHHHHHHHHHHHHHH-HHHHHHH-------HHhccCchHH-HHHHhHHHHHHHHHHHHHhCCCCc--H
Confidence 11 1 11111 22222222233333 3345788 8988888774 455667899999999999999654 3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCC
Q 018191 281 ASIISEICGFVVVLSGTILLHTTKDFE 307 (359)
Q Consensus 281 ~~~~~~~~G~~~~~~Gv~lLs~~~~~~ 307 (359)
. .++|.++++.|+.+..+.+.+|
T Consensus 311 ~----~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 311 G----CLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred H----HHHHHHHHHHHHHHHHhhhhhh
Confidence 3 4578888999999887665544
No 12
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.60 E-value=1.7e-05 Score=76.57 Aligned_cols=209 Identities=14% Similarity=0.141 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhh----chhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCCCCCCHHH
Q 018191 63 MIVGEVANFVAYAF----APAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQESPITSVQE 138 (359)
Q Consensus 63 ~~~g~~~~~~Al~~----ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~~~~s~~e 138 (359)
+.....+.+.++.+ .|.....-+..+.-++..+++++++|||++++++.|+++..+|+.++....+. .+.++
T Consensus 71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~----~~~~~ 146 (295)
T PRK11689 71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNG----LSLAE 146 (295)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCcc----chhhh
Confidence 33344445555544 35555566778889999999999999999999999999999999987643211 11111
Q ss_pred HHHHh-cChhHHHHHHHHHHHHHHHHH-hhcccCCC-chhHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcCC-ccccchH
Q 018191 139 IWSLA-TQPAFLLYVASVIVLVFILIF-HFAPRCGN-TNALVFIGICSLMGSLSVMSVKALGTSLKLTFEGK-NQLLYPD 214 (359)
Q Consensus 139 l~~~~-~~~~fl~y~~~~~~~~~~li~-~~~~r~g~-~~~~~y~~i~gl~g~~tvl~~K~v~~~l~~~~~g~-~~~~~~~ 214 (359)
.+... .++ ...........+...+ ...+|..+ .+...+... .++.. +. ... ..++. ..-.++.
T Consensus 147 ~~~~~~~~~--~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~---~~~~~-l~---~~~----~~~~~~~~~~~~~ 213 (295)
T PRK11689 147 LINNIASNP--LSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFI---LTALA-LW---IKY----FLSPQPAMVFSLP 213 (295)
T ss_pred hhhccccCh--HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHH---HHHHH-HH---HHH----HHhcCccccCCHH
Confidence 10000 011 1111111111111111 12233221 122221111 11111 10 000 01221 1122344
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Q 018191 215 TWFFMLVVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVL 294 (359)
Q Consensus 215 ty~~l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~ 294 (359)
.|..++....+...-..+.|+ ++++.+++.+.+. .-..++++++.|.++++|..+ +. ..+|.++++
T Consensus 214 ~~~~l~~~~~~t~~~~~l~~~-------al~~~~a~~~s~~-~~l~Pv~a~i~~~~~lgE~~~--~~----~~iG~~lI~ 279 (295)
T PRK11689 214 AIIKLLLAAAAMGFGYAAWNV-------GILHGNMTLLATA-SYFTPVLSAALAALLLSTPLS--FS----FWQGVAMVT 279 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHccCHHHHHHH-HHhHHHHHHHHHHHHhCCCCc--HH----HHHHHHHHH
Confidence 444433322233333455588 9999998876655 457899999999999999643 33 457777888
Q ss_pred Hhhhhhcc
Q 018191 295 SGTILLHT 302 (359)
Q Consensus 295 ~Gv~lLs~ 302 (359)
.|+++...
T Consensus 280 ~gv~~~~~ 287 (295)
T PRK11689 280 AGSLLCWL 287 (295)
T ss_pred HhHHHHhh
Confidence 88776543
No 13
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.60 E-value=3.2e-06 Score=81.44 Aligned_cols=211 Identities=11% Similarity=0.073 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHH-hhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCCCCCCH
Q 018191 58 VGMAIMIVGEVANFVAY-AFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQESPITSV 136 (359)
Q Consensus 58 ~G~~l~~~g~~~~~~Al-~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~~~~s~ 136 (359)
.|......+..+...++ ...|.....-+..+.-++..+++.+ +|||+++++++|.++.++|+.++... ++.+....
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~--~~~~~~~~ 150 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG--GNLSGNPW 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC--cccccchH
Confidence 45554455566667777 8888888889999999999999975 79999999999999999998876432 11111111
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcC-CccccchHH
Q 018191 137 QEIWSLATQPAFLLYVASVIVLVFILIFHFAPRCGNTNALVFIGICSLMGSLSVMSVKALGTSLKLTFEG-KNQLLYPDT 215 (359)
Q Consensus 137 ~el~~~~~~~~fl~y~~~~~~~~~~li~~~~~r~g~~~~~~y~~i~gl~g~~tvl~~K~v~~~l~~~~~g-~~~~~~~~t 215 (359)
.+ .+.......- .......+|..+++........-.+++..... +.. ..++ .....++..
T Consensus 151 G~-----------l~~l~a~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~ 211 (292)
T PRK11272 151 GA-----------ILILIASASW-AFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLI---ASL----LSGERLTALPTLSG 211 (292)
T ss_pred HH-----------HHHHHHHHHH-HHHHHHHHhcCCCcchHHHHHHHHHHHHHHHH---HHH----HcCCcccccCCHHH
Confidence 11 1111111100 01111233333222111111111222111110 110 0111 112234455
Q ss_pred HHHHH-HHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Q 018191 216 WFFML-VVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVL 294 (359)
Q Consensus 216 y~~l~-~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~ 294 (359)
|..++ ..+.+...-....++ ++++.+++.+..+ ....++.+.+.|.++++|.. ++. ...|.++++
T Consensus 212 ~~~i~~l~i~~s~~~~~l~~~-------~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~--t~~----~iiG~~lIi 277 (292)
T PRK11272 212 FLALGYLAVFGSIIAISAYMY-------LLRNVRPALATSY-AYVNPVVAVLLGTGLGGETL--SPI----EWLALGVIV 277 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCCC--cHH----HHHHHHHHH
Confidence 54333 333344455566678 8888888776655 66789999999999999963 333 457888899
Q ss_pred HhhhhhcccC
Q 018191 295 SGTILLHTTK 304 (359)
Q Consensus 295 ~Gv~lLs~~~ 304 (359)
.|+++++.++
T Consensus 278 ~gv~~~~~~~ 287 (292)
T PRK11272 278 FAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 14
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.52 E-value=5.7e-06 Score=79.85 Aligned_cols=66 Identities=20% Similarity=0.295 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhhee
Q 018191 57 WVGMAIMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIII 123 (359)
Q Consensus 57 ~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~li 123 (359)
..|+. +.+...++..++.+.+.+..+=+.+++.+++++++++++|||++++++.|.+++++|+.+.
T Consensus 70 ~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 70 PVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 35555 4677789999999999999999999999999999999999999999999999999999864
No 15
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.52 E-value=6.2e-05 Score=70.40 Aligned_cols=211 Identities=18% Similarity=0.262 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHH-HHhcCCCCccchhhHHHHhhhhheeeeecCCCCCCCCH
Q 018191 58 VGMAIMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAH-FILHEKLPQLGILGCVMCIAGSIIIVIHAPQESPITSV 136 (359)
Q Consensus 58 ~G~~l~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~-~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~~~~s~ 136 (359)
.|......+..+.+.++...|....+++...+.++..+++. +++|||+++++|.|..+...|+.++......+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~-- 152 (292)
T COG0697 75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILS-- 152 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHH--
Confidence 45555567888999999999999999999999999999997 777999999999999999999998865443322210
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHH-HHHhhhhHHHHHHHHHHHHHHHhhcCCccccchHH
Q 018191 137 QEIWSLATQPAFLLYVASVIVLVFILIFHFAPRCGNTNALVFIG-ICSLMGSLSVMSVKALGTSLKLTFEGKNQLLYPDT 215 (359)
Q Consensus 137 ~el~~~~~~~~fl~y~~~~~~~~~~li~~~~~r~g~~~~~~y~~-i~gl~g~~tvl~~K~v~~~l~~~~~g~~~~~~~~t 215 (359)
..-..+....... ..+.....++..+........ .... +... ... .......+....+..
T Consensus 153 ---------~~g~~~~l~a~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~--~~~~~~~~~~~~~~~ 213 (292)
T COG0697 153 ---------LLGLLLALAAALL-WALYTALVKRLSRLGPVTLALLLQLL-LALL------LLL--LFFLSGFGAPILSRA 213 (292)
T ss_pred ---------HHHHHHHHHHHHH-HHHHHHHHHHhcCCChHHHHHHHHHH-HHHH------HHH--HHHhccccccCCHHH
Confidence 1111111111111 011111122211111111111 1111 0000 000 001111122223333
Q ss_pred HHHHH-HHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Q 018191 216 WFFML-VVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVL 294 (359)
Q Consensus 216 y~~l~-~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~ 294 (359)
|..+. .++.+...-....++ ++++.+++.+.|.. ...++.+++.+.++++|.-+ .. ...|.++++
T Consensus 214 ~~~~~~~g~~~~~i~~~~~~~-------~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~~--~~----~~~G~~li~ 279 (292)
T COG0697 214 WLLLLYLGVFSTGLAYLLWYY-------ALRLLGASLVALLS-LLEPVFAALLGVLLLGEPLS--PA----QLLGAALVV 279 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCCc--HH----HHHHHHHHH
Confidence 33332 223333233455578 99999998877766 66777788899999999643 33 345557888
Q ss_pred Hhhhhhccc
Q 018191 295 SGTILLHTT 303 (359)
Q Consensus 295 ~Gv~lLs~~ 303 (359)
.|+++...+
T Consensus 280 ~g~~l~~~~ 288 (292)
T COG0697 280 LGVLLASLR 288 (292)
T ss_pred HHHHHHhcc
Confidence 888887765
No 16
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.49 E-value=4.4e-05 Score=73.65 Aligned_cols=256 Identities=13% Similarity=0.103 Sum_probs=139.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhc--Cccc--CC--------cccccccchhH----HHHHHHHHHHHHH
Q 018191 6 DNLKGFVLALLSSFFIGSSFIIKKKGLRRAAAAS--GVRA--GV--------GGFTYLLEPLW----WVGMAIMIVGEVA 69 (359)
Q Consensus 6 ~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~--~~~~--g~--------~~~~~l~~p~W----~~G~~l~~~g~~~ 69 (359)
|...|+.+.+++.++.+.+.++-|.+....+... ..|- +. ..+.-.+++.| +.|.. +.....+
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~ 87 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYL 87 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHH
Confidence 4467899999999999999999998765321110 0000 00 00001122222 45543 4566677
Q ss_pred HHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCCCCCCHHHHHHHhcChhHH
Q 018191 70 NFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQESPITSVQEIWSLATQPAFL 149 (359)
Q Consensus 70 ~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~~~~s~~el~~~~~~~~fl 149 (359)
.+.++...|.+...-+....-++..++++ |+.+ ++.+..+.++|+.+++..+...+ ..+ +.-.
T Consensus 88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~~~~~~~~-~~~----------~~G~ 150 (293)
T PRK10532 88 FYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLLPLGQDVS-HVD----------LTGA 150 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheeeecCCCcc-cCC----------hHHH
Confidence 88899999999877666666677666653 5543 45667778889887764332111 111 1001
Q ss_pred HHHHHHHHHHHHHHHh-hcccCCCc-hhHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCccccchHHHHH-HHHHHHHH
Q 018191 150 LYVASVIVLVFILIFH-FAPRCGNT-NALVFIGICSLMGSLSVMSVKALGTSLKLTFEGKNQLLYPDTWFF-MLVVAICV 226 (359)
Q Consensus 150 ~y~~~~~~~~~~li~~-~~~r~g~~-~~~~y~~i~gl~g~~tvl~~K~v~~~l~~~~~g~~~~~~~~ty~~-l~~~v~~~ 226 (359)
.+. ....++..++. ..++..++ ..... ....++++.- +. .+. ...+.....++..|.. +..++.+.
T Consensus 151 ll~--l~aa~~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~-l~--~~~-----~~~~~~~~~~~~~~~~~l~lgv~~t 219 (293)
T PRK10532 151 ALA--LGAGACWAIYILSGQRAGAEHGPATV-AIGSLIAALI-FV--PIG-----ALQAGEALWHWSILPLGLAVAILST 219 (293)
T ss_pred HHH--HHHHHHHHHHHHHHHHHhccCCchHH-HHHHHHHHHH-HH--HHH-----HHccCcccCCHHHHHHHHHHHHHHH
Confidence 111 11111111111 11221111 11111 1222333211 11 011 0111122235555543 34556677
Q ss_pred HHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhcccC
Q 018191 227 IMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTTK 304 (359)
Q Consensus 227 l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~~ 304 (359)
..+....|+ ++++.+++.+.+. ....++++++.|.++|+|.. ++. ...|.+++++|++...+.+
T Consensus 220 ~~~~~l~~~-------~~~~~~a~~as~~-~~l~Pv~a~l~~~l~lgE~~--~~~----~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 220 ALPYSLEMI-------ALTRLPTRTFGTL-MSMEPALAAVSGMIFLGETL--TLI----QWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHH-------HHHhcChhHHHHH-HHhHHHHHHHHHHHHhCCCC--cHH----HHHHHHHHHHHHHHHHhcC
Confidence 777778899 9999999886664 56899999999999999964 344 4466667777777776554
No 17
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.48 E-value=6.9e-07 Score=76.22 Aligned_cols=113 Identities=26% Similarity=0.351 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhhc--Cccc--------------CC-cccccccchhH----HHHHHHHHHHHHH
Q 018191 11 FVLALLSSFFIGSSFIIKKKGLRRAAAAS--GVRA--------------GV-GGFTYLLEPLW----WVGMAIMIVGEVA 69 (359)
Q Consensus 11 v~LAl~ss~~~a~G~vlqk~~~~~~~~~~--~~~~--------------g~-~~~~~l~~p~W----~~G~~l~~~g~~~ 69 (359)
.+.|+.|+++.++..++-|-|.+...... -.|. |. ....-...+.| ..| +.-+++-++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSG-la~glswl~ 83 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSG-LAGGLSWLL 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHH-HHHHHHHHH
Confidence 56789999999999999999976322110 0000 00 00001122222 123 444566778
Q ss_pred HHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheee
Q 018191 70 NFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIV 124 (359)
Q Consensus 70 ~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv 124 (359)
.|.|+.-+++|.|.|+-..+.++..+++..+||||++...|+|+.++++|++++.
T Consensus 84 Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 84 YFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 8999999999999999999999999999999999999999999999999998774
No 18
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.37 E-value=4.2e-07 Score=76.30 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhHHHhhhhcCc-ccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhchhhhhhchh-hHHHHHHHHHHH
Q 018191 21 IGSSFIIKKKGLRRAAAASGV-RAGVGGFTYLLEPLWWVGMAIMIVGEVANFVAYAFAPAVLVTPLG-ALSIIVSAVLAH 98 (359)
Q Consensus 21 ~a~G~vlqk~~~~~~~~~~~~-~~g~~~~~~l~~p~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~-a~~li~~~ila~ 98 (359)
-+...-+-|||.+..+..... +.-.+....++||.+++++++...|.+..+..++-+|+|+..|+. +++++++++.++
T Consensus 8 WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~ 87 (113)
T PF10639_consen 8 WGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGW 87 (113)
T ss_pred hcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHH
Confidence 344455677776543322111 001134468899999999999999999999999999999999996 999999999997
Q ss_pred HHhcCCCCccchhhHHHHhhhhheee
Q 018191 99 FILHEKLPQLGILGCVMCIAGSIIIV 124 (359)
Q Consensus 99 ~~L~e~l~~~~~~G~~li~~G~~liv 124 (359)
++-+|..+++.++|+.+++.|+.+.+
T Consensus 88 ~lge~~~~~~~~~G~~Li~~Gv~Lcv 113 (113)
T PF10639_consen 88 LLGEEVISRRTWLGMALILAGVALCV 113 (113)
T ss_pred HhcCcccchhHHHHHHHHHcCeeeeC
Confidence 77777778888999999999998753
No 19
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.29 E-value=5.1e-06 Score=69.10 Aligned_cols=68 Identities=28% Similarity=0.408 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeec
Q 018191 59 GMAIMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHA 127 (359)
Q Consensus 59 G~~l~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a 127 (359)
|.+...++..+.+.|+.++| ..+.|+.+++.+++.+++.+++|||+++++|.|++++.+|++++....
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 44455578899999999999 589999999999999999999999999999999999999999886543
No 20
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.21 E-value=9.1e-05 Score=71.16 Aligned_cols=213 Identities=15% Similarity=0.280 Sum_probs=129.2
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHhhchhhhhhchh-hHHHHHHHHHHHHHhcCCCCccchh----hHHHHhhhhheeee
Q 018191 54 PLWWVGMAI---MIVGEVANFVAYAFAPAVLVTPLG-ALSIIVSAVLAHFILHEKLPQLGIL----GCVMCIAGSIIIVI 125 (359)
Q Consensus 54 p~W~~G~~l---~~~g~~~~~~Al~~ap~slv~Pl~-a~~li~~~ila~~~L~e~l~~~~~~----G~~li~~G~~liv~ 125 (359)
..|+.+++. -.+|++.|+.++.....|...|+. +++++.|.+.+.++++|--+..+++ +.+++++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 556666643 458999999999999999999998 8999999999999999998887764 88899999998877
Q ss_pred ecCCCCCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHhhhhHHHHHHHHHHHHHHH---
Q 018191 126 HAPQESPITSVQEIWSLATQPAFLLYVASVIVLVFILIFHFAPRCGNTNALVFIGICSLMGSLSVMSVKALGTSLKL--- 202 (359)
Q Consensus 126 ~a~~~~~~~s~~el~~~~~~~~fl~y~~~~~~~~~~li~~~~~r~g~~~~~~y~~i~gl~g~~tvl~~K~v~~~l~~--- 202 (359)
...++++..+..+..+ . +... .+..+....|...||..+-+. .+.++-.+++..+-.
T Consensus 123 ~~~~~~~~~~~~~~~k-----g-i~~L--l~stigy~~Y~~~~~~~~~~~------------~~~~lPqaiGm~i~a~i~ 182 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKK-----G-ILAL--LISTIGYWIYSVIPKAFHVSG------------WSAFLPQAIGMLIGAFIF 182 (269)
T ss_pred ccccccccccccchhh-----H-HHHH--HHHHHHHHHHHHHHHhcCCCh------------hHhHHHHHHHHHHHHHHH
Confidence 6655554333222221 1 1111 111122233444455533221 122222222211110
Q ss_pred -hhcCCccccchHHHHHHHHHHHHHHHHH-HHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCH
Q 018191 203 -TFEGKNQLLYPDTWFFMLVVAICVIMQM-NYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTA 280 (359)
Q Consensus 203 -~~~g~~~~~~~~ty~~l~~~v~~~l~Q~-~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~ 280 (359)
.+. ++++.+-.+|.=++.++.-.+.=+ +++ +-+.--.+.-.|+-|.. .+.+.+.|+.+|+|.+ +.
T Consensus 183 ~~~~-~~~~~~k~~~~nil~G~~w~ignl~~~i---------s~~~~G~a~af~lSQ~~-vvIStlgGI~il~E~K--t~ 249 (269)
T PF06800_consen 183 NLFS-KKPFFEKKSWKNILTGLIWGIGNLFYLI---------SAQKNGVATAFTLSQLG-VVISTLGGIFILKEKK--TK 249 (269)
T ss_pred hhcc-cccccccchHHhhHHHHHHHHHHHHHHH---------hHHhccchhhhhHHhHH-HHHHHhhhheEEEecC--ch
Confidence 011 233334444444444432222211 222 22223344556676766 6678899999999986 45
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 018191 281 ASIISEICGFVVVLSGTIL 299 (359)
Q Consensus 281 ~~~~~~~~G~~~~~~Gv~l 299 (359)
.++....+|+++++.|.++
T Consensus 250 ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 250 KEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hhHHHHHHHHHHHHHhhhc
Confidence 6888999999999988775
No 21
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.18 E-value=0.00026 Score=70.32 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheee
Q 018191 66 GEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIV 124 (359)
Q Consensus 66 g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv 124 (359)
+..+...++.+.+.+..+=+-+++-+++++++++++|||++++.+++++++++|+.+..
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 34556699999999999999999999999999999999999999999999999999875
No 22
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.15 E-value=0.00051 Score=66.64 Aligned_cols=218 Identities=16% Similarity=0.259 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCCCCCCHHHH
Q 018191 60 MAIMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQESPITSVQEI 139 (359)
Q Consensus 60 ~~l~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~~~~s~~el 139 (359)
-+++.++..++-.|+.+.|...-+=+-+..++++++++.+++|+|.+++++++++++++|+++......++++..+.++.
T Consensus 71 ~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~ 150 (303)
T PF08449_consen 71 SFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSF 150 (303)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccc
Confidence 35666777888899999999999999999999999999999999999999999999999999988776544333221100
Q ss_pred HHHhcChhHHHHHHHHHHHHH--HH-HH--hhcccCCC--chhHHHHHHHHhhhhHHHHHH-HHHHHHHHHhhcCCcccc
Q 018191 140 WSLATQPAFLLYVASVIVLVF--IL-IF--HFAPRCGN--TNALVFIGICSLMGSLSVMSV-KALGTSLKLTFEGKNQLL 211 (359)
Q Consensus 140 ~~~~~~~~fl~y~~~~~~~~~--~l-i~--~~~~r~g~--~~~~~y~~i~gl~g~~tvl~~-K~v~~~l~~~~~g~~~~~ 211 (359)
++. ..++.+....++ +. .+ +..++++. ...+.|.-.-++......+.. + -++ ..... .-...
T Consensus 151 -----~~~-~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~-~~~-~~~~~--~f~~~ 220 (303)
T PF08449_consen 151 -----SSA-LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLP-TGE-FRSAI--RFISA 220 (303)
T ss_pred -----cch-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH-hhH-hhHHH--HHHHH
Confidence 000 011111111111 10 00 11223332 234444444333222111111 1 111 11000 11235
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Q 018191 212 YPDTWFFMLVVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFV 291 (359)
Q Consensus 212 ~~~ty~~l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~ 291 (359)
||..+..++....+...-+.+.+. -.++++++...=+ ...=...+++.+.++|++ +.++.++. |.+
T Consensus 221 ~p~~~~~l~~~s~~~~~g~~~i~~-------~~~~~~al~~t~v-~t~Rk~~sillS~~~f~~--~~~~~~~~----G~~ 286 (303)
T PF08449_consen 221 HPSVLLYLLLFSLTGALGQFFIFY-------LIKKFSALTTTIV-TTLRKFLSILLSVIIFGH--PLSPLQWI----GIV 286 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcCchhhhhH-HHHHHHHHHHHHHHhcCC--cCChHHHH----HHH
Confidence 777666665555543333445566 6777777664433 344467789999999986 56666664 445
Q ss_pred HHHHhhhhhc
Q 018191 292 VVLSGTILLH 301 (359)
Q Consensus 292 ~~~~Gv~lLs 301 (359)
+++.|+.+=+
T Consensus 287 lv~~g~~~~~ 296 (303)
T PF08449_consen 287 LVFAGIFLYS 296 (303)
T ss_pred HhHHHHHHHH
Confidence 5666666543
No 23
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.11 E-value=2.6e-05 Score=65.29 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccccccchhH-HHHHHHHHHHHHHHHHHHhhchhhhhhch-hhHHHHH
Q 018191 15 LLSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFTYLLEPLW-WVGMAIMIVGEVANFVAYAFAPAVLVTPL-GALSIIV 92 (359)
Q Consensus 15 l~ss~~~a~G~vlqk~~~~~~~~~~~~~~g~~~~~~l~~p~W-~~G~~l~~~g~~~~~~Al~~ap~slv~Pl-~a~~li~ 92 (359)
+.+.++...|....|++. + +++|.| +..++++++++.+...|+...|+++..|+ .+++.+.
T Consensus 8 ~~a~~~Ev~~~~~lK~s~-------g----------f~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~ 70 (110)
T PRK09541 8 GGAILAEVIGTTLMKFSE-------G----------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVL 70 (110)
T ss_pred HHHHHHHHHHHHHHHHhc-------C----------CCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 345666666776666641 0 234554 45667778888888999999999999999 6799999
Q ss_pred HHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecC
Q 018191 93 SAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAP 128 (359)
Q Consensus 93 ~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~ 128 (359)
+.+.+.+++||+++..+++|..++++|++++-..++
T Consensus 71 ~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999998855443
No 24
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.10 E-value=3.8e-05 Score=65.29 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhchhhhhhch-hhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCC
Q 018191 55 LWWVGMAIMIVGEVANFVAYAFAPAVLVTPL-GALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQ 129 (359)
Q Consensus 55 ~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl-~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~ 129 (359)
.|+..++++++++.+...++...|+++..|+ .+++.+...+.+.+++||+++..+++|+.++++|++.+-..+++
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~ 107 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRK 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3577788888999999999999999999999 57999999999999999999999999999999999988555543
No 25
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.09 E-value=0.00011 Score=72.94 Aligned_cols=287 Identities=12% Similarity=0.111 Sum_probs=153.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhHHHhh--------------------hhcCcccCCccccccc---chhHHHH
Q 018191 3 FSKDNLKGFVLALLSSFFIGSSFIIKKKGLRRAA--------------------AASGVRAGVGGFTYLL---EPLWWVG 59 (359)
Q Consensus 3 ~~~~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~--------------------~~~~~~~g~~~~~~l~---~p~W~~G 59 (359)
|..+..+|++..+++.++.+.=.+-+||. +.=+ ..-..+ ....+++ ...|..+
T Consensus 1 m~~~~~~G~~~~~i~~~~~GS~~~p~K~~-k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~---~f~~~~~~~~~~~~~~~ 76 (345)
T PRK13499 1 MSNAIILGIIWHLIGGASSGSFYAPFKKV-KKWSWETMWSVGGIFSWLILPWLIAALLLP---DFWAYYSSFSGSTLLPV 76 (345)
T ss_pred CCchhHHHHHHHHHHHHHhhccccccccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHhcCHHHHHHH
Confidence 56788999999999999999999989882 2100 000111 1122222 3455555
Q ss_pred H---HHHHHHHHHHHHHHhhchhhhhhchh-hHHHHHHHHHHHHHhcCCC---Ccc----chhhHHHHhhhhheeeeecC
Q 018191 60 M---AIMIVGEVANFVAYAFAPAVLVTPLG-ALSIIVSAVLAHFILHEKL---PQL----GILGCVMCIAGSIIIVIHAP 128 (359)
Q Consensus 60 ~---~l~~~g~~~~~~Al~~ap~slv~Pl~-a~~li~~~ila~~~L~e~l---~~~----~~~G~~li~~G~~liv~~a~ 128 (359)
+ ++-.+|++.++.+..+...|+-.|+. +++++.+.++..++++|=- +.. ..+|++++++|+++....+.
T Consensus 77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5 34468999999999999999999996 6889999999999998643 333 35799999999998877543
Q ss_pred CCCCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHhh-----cc----cCCCchhHHHHH---HHH-hhhhHHHHHHHH
Q 018191 129 QESPITSVQEIWSLATQPAFLLYVASVIVLVFILIFHF-----AP----RCGNTNALVFIG---ICS-LMGSLSVMSVKA 195 (359)
Q Consensus 129 ~~~~~~s~~el~~~~~~~~fl~y~~~~~~~~~~li~~~-----~~----r~g~~~~~~y~~---i~g-l~g~~tvl~~K~ 195 (359)
..++..+.+|-.+. ....-+..+++..+......+.. -+ ..|. +. .|.. .++ ++|++..-..=+
T Consensus 157 ~k~~~~~~~~~~~~-~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~-~~-~~~~lp~~~~~~~G~~~~n~~~~ 233 (345)
T PRK13499 157 LKERKMGIKKAEEF-NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGV-DP-LYAALPSYVVIMGGGAITNLGFC 233 (345)
T ss_pred hccccccccccccc-chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCC-Cc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111100000 00112222222222211110000 01 1121 11 1111 111 233331110000
Q ss_pred HHHHHH-HhhcCCccccc-----hHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccCc--eeecchhHHHHHHHHHHH
Q 018191 196 LGTSLK-LTFEGKNQLLY-----PDTWFFMLVVAICVIMQMNYLNKESQMMLQALDTFNT--AVVSPIYYVMFTSLTILA 267 (359)
Q Consensus 196 v~~~l~-~~~~g~~~~~~-----~~ty~~l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~--~~v~Pv~~v~~t~~~i~~ 267 (359)
.-..-| .+.+....+.. +..|++....-+.-..|..+.-. +. + +..++ ....++-+-...+.+.+.
T Consensus 234 ~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~----~~-~-~~g~~~~~~sw~l~m~~~Viistlw 307 (345)
T PRK13499 234 FIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAM----GH-S-KLGAQYDFVSWMLHMSFYVLCGNLW 307 (345)
T ss_pred HHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHH----HH-H-HcCCccchHHHHHhccHHHHHHHHh
Confidence 000001 01110112222 45566655555555555444322 00 1 11111 111223333344667777
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhccc
Q 018191 268 SVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTT 303 (359)
Q Consensus 268 G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~ 303 (359)
|+ +++||+..+........+|+++++.|.+++.-.
T Consensus 308 Gi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 308 GL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 87 599999988889999999999999999987643
No 26
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.04 E-value=2.3e-05 Score=75.64 Aligned_cols=126 Identities=19% Similarity=0.108 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcC----c---------ccCCcccccccch-----hHHHHHHHHHHHHH
Q 018191 7 NLKGFVLALLSSFFIGSSFIIKKKGLRRAAAASG----V---------RAGVGGFTYLLEP-----LWWVGMAIMIVGEV 68 (359)
Q Consensus 7 ~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~----~---------~~g~~~~~~l~~p-----~W~~G~~l~~~g~~ 68 (359)
..+|.++++.++++.+...++.||..++.+...- . -.-... ....++ .++.|++..++++.
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~lgv~~t~~~~~ 224 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAG-EALWHWSILPLGLAVAILSTALPYS 224 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccC-cccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999988775332111000 0 000000 011121 24667777788889
Q ss_pred HHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCCCC
Q 018191 69 ANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQESPI 133 (359)
Q Consensus 69 ~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~~~ 133 (359)
++..++...|.+.+.++..+..+++.+++.+++||+++..+++|.++++.|+.......++|++.
T Consensus 225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~ 289 (293)
T PRK10532 225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKI 289 (293)
T ss_pred HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999886655554443
No 27
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.85 E-value=0.0027 Score=59.71 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheee
Q 018191 63 MIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIV 124 (359)
Q Consensus 63 ~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv 124 (359)
+..+..+.+.++...|.+..+-+...+-++.++++++++|||+++++|+|+++..+|+.++.
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999999999999999999999999999999998764
No 28
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.74 E-value=0.00023 Score=66.52 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhc-Cc---cc------------CCcccccccchhH----HHHHHHHHH
Q 018191 6 DNLKGFVLALLSSFFIGSSFIIKKKGLRRAAAAS-GV---RA------------GVGGFTYLLEPLW----WVGMAIMIV 65 (359)
Q Consensus 6 ~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~-~~---~~------------g~~~~~~l~~p~W----~~G~~l~~~ 65 (359)
+...|..++++++++.+...++.||...+.+... .. +. -.+.........| +.|.+..++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 4467999999999999999999999754322100 00 00 0000011112223 244445567
Q ss_pred HHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhh
Q 018191 66 GEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGS 120 (359)
Q Consensus 66 g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~ 120 (359)
+..+++.++...|.+.+..+..+..+++.+++.+++||+++..++.|+.+++.|+
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999999999999999999999886
No 29
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.71 E-value=0.00021 Score=57.89 Aligned_cols=85 Identities=16% Similarity=0.046 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccccccchhHHHHHH-HHHHHHHHHHHHHhhchhhhhhchh-hHHHHH
Q 018191 15 LLSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFTYLLEPLWWVGMA-IMIVGEVANFVAYAFAPAVLVTPLG-ALSIIV 92 (359)
Q Consensus 15 l~ss~~~a~G~vlqk~~~~~~~~~~~~~~g~~~~~~l~~p~W~~G~~-l~~~g~~~~~~Al~~ap~slv~Pl~-a~~li~ 92 (359)
+++.++...+....|++ .-.+++.|..+.+ ++++++.+...|+...|.++..|+- +++.+.
T Consensus 7 ~~a~~~ev~~~~~lK~s-----------------~g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~ 69 (93)
T PF00893_consen 7 LLAILFEVVGTIALKAS-----------------HGFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVG 69 (93)
T ss_dssp HHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------------HhhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 34555666677777762 1133445555544 6788989999999999999999985 599999
Q ss_pred HHHHHHHHhcCCCCccchhhHHHH
Q 018191 93 SAVLAHFILHEKLPQLGILGCVMC 116 (359)
Q Consensus 93 ~~ila~~~L~e~l~~~~~~G~~li 116 (359)
..+.+.++.||+++..++.|+.++
T Consensus 70 ~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 70 VTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHhheeeC
Confidence 999999999999999999999875
No 30
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.69 E-value=0.00022 Score=71.37 Aligned_cols=124 Identities=17% Similarity=0.207 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcC-----------------cc-cCCcccccc--cchhHHHHHHH---
Q 018191 6 DNLKGFVLALLSSFFIGSSFIIKKKGLRRAAAASG-----------------VR-AGVGGFTYL--LEPLWWVGMAI--- 62 (359)
Q Consensus 6 ~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~-----------------~~-~g~~~~~~l--~~p~W~~G~~l--- 62 (359)
++.+|.++++.|+++.+...++||+-.++-+.... .- .+....... .++ ++..++.
T Consensus 186 ~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~y~~i 264 (358)
T PLN00411 186 DWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDI-TLITIVTMAI 264 (358)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccch-HHHHHHHHHH
Confidence 35779999999999999999999986544211100 00 000000000 011 1112221
Q ss_pred -HHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCC
Q 018191 63 -MIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQE 130 (359)
Q Consensus 63 -~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~ 130 (359)
..+++.+|..++...+.+.+....-+.-+++++++..+|+|+++..+++|+++++.|+.+......+|
T Consensus 265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 22366778888999999999999999999999999999999999999999999999999875443333
No 31
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.67 E-value=0.0034 Score=59.57 Aligned_cols=73 Identities=18% Similarity=0.342 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCC
Q 018191 58 VGMAIMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQE 130 (359)
Q Consensus 58 ~G~~l~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~ 130 (359)
+=-++|.+.+.+.++++...+.+.-|=+.-.-++++++++.++||+|+++++|++..+.+.|++++-.....+
T Consensus 22 vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 22 VPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 4447899999999999999999999999999999999999999999999999999999999999886655443
No 32
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.61 E-value=0.00095 Score=55.86 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccccccchhHHHHHH-HHHHHHHHHHHHHhhchhhhhhchh
Q 018191 8 LKGFVLALLSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFTYLLEPLWWVGMA-IMIVGEVANFVAYAFAPAVLVTPLG 86 (359)
Q Consensus 8 ~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~~g~~~~~~l~~p~W~~G~~-l~~~g~~~~~~Al~~ap~slv~Pl~ 86 (359)
...-..=+++.++.-.|....|++. + +++|.|...++ .+++++.+-..|+...|..+..++-
T Consensus 6 ~~~~~~L~~Ai~~Ev~~t~~Lk~s~-------g----------f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW 68 (109)
T PRK10650 6 WIHAAWLALAIVLEIVANIFLKFSD-------G----------FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALW 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------C----------CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHH
Confidence 3444444566677777777776540 1 44666655554 3456777778888999999999985
Q ss_pred h-HHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhhee
Q 018191 87 A-LSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIII 123 (359)
Q Consensus 87 a-~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~li 123 (359)
+ ++.+...+.+.++.||+++..+++|..+++.|++.+
T Consensus 69 ~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 69 GGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 4 899999999999999999999999999999999865
No 33
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.55 E-value=8.5e-05 Score=60.76 Aligned_cols=69 Identities=25% Similarity=0.396 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheee
Q 018191 56 WWVGMAIMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIV 124 (359)
Q Consensus 56 W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv 124 (359)
...|.+...++..+...++...|.+.++++..+..+++.+++..++||+++++++.|+++++.|+.++.
T Consensus 57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345555567888999999999999999999999999999999999999999999999999999998653
No 34
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.49 E-value=0.00048 Score=66.54 Aligned_cols=117 Identities=19% Similarity=0.150 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhc------C----c-ccCCcccccccchhHHHHH----HHHHHHHHHHHH
Q 018191 8 LKGFVLALLSSFFIGSSFIIKKKGLRRAAAAS------G----V-RAGVGGFTYLLEPLWWVGM----AIMIVGEVANFV 72 (359)
Q Consensus 8 ~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~------~----~-~~g~~~~~~l~~p~W~~G~----~l~~~g~~~~~~ 72 (359)
..|..++++|+++.+.+.++.||-.++.+... . . -.-.+....-.++..|..+ +..++++.++..
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~~ 234 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWNV 234 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999998532211000 0 0 0000000011122222111 223567788999
Q ss_pred HHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheee
Q 018191 73 AYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIV 124 (359)
Q Consensus 73 Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv 124 (359)
++...|.+.+.++..+.-+++.+++.+++||+++..+++|+++++.|+.+..
T Consensus 235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence 9999999999999999999999999999999999999999999999988663
No 35
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.43 E-value=0.00052 Score=65.62 Aligned_cols=267 Identities=20% Similarity=0.282 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhhc-Cccc-CCc-----ccccccchh--------HHHHHHHH-HHHHHHHHH
Q 018191 9 KGFVLALLSSFFIGSSFIIKKKGLRRAAAAS-GVRA-GVG-----GFTYLLEPL--------WWVGMAIM-IVGEVANFV 72 (359)
Q Consensus 9 iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~-~~~~-g~~-----~~~~l~~p~--------W~~G~~l~-~~g~~~~~~ 72 (359)
+|+.+..+| .+.+.+.++-++...-.+..- .-|- +.- ..-|.+.|- |++==.+| --|..+...
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvmlmyy 116 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVMLMYY 116 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHHHHH
Confidence 577888888 777888878777654322110 1110 000 011222221 21111122 235567788
Q ss_pred HHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheee----eecCCCCCCCCHHHHHHHhcChhH
Q 018191 73 AYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIV----IHAPQESPITSVQEIWSLATQPAF 148 (359)
Q Consensus 73 Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv----~~a~~~~~~~s~~el~~~~~~~~f 148 (359)
||.+.|++=..-+.-.+-+++.++|+.+||||.++.|.+|+.....|+++++ +|+.++....+.+ .-+..|..
T Consensus 117 a~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~---~~~~~~gt 193 (346)
T KOG4510|consen 117 ALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQ---VEYDIPGT 193 (346)
T ss_pred HHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccc---ccccCCch
Confidence 8888888777777778889999999999999999999999999999999986 4554332222211 11122331
Q ss_pred HHHHHHHHHH--HHH--HHHhhcccCCCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCcccc-chHH-HHHHHHH
Q 018191 149 LLYVASVIVL--VFI--LIFHFAPRCGNTNALVFIGICSLMGSLSVMSVKALGTSLKLTFEGKNQLL-YPDT-WFFMLVV 222 (359)
Q Consensus 149 l~y~~~~~~~--~~~--li~~~~~r~g~~~~~~y~~i~gl~g~~tvl~~K~v~~~l~~~~~g~~~~~-~~~t-y~~l~~~ 222 (359)
. +.+..++ +.+ ++-+..++-...-.+.|-+.-+++.++-.. -.+ |.-|+- .+.= |+++..+
T Consensus 194 ~--aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~--~~i---------g~~~lP~cgkdr~l~~~lG 260 (346)
T KOG4510|consen 194 V--AAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGC--ASI---------GAVQLPHCGKDRWLFVNLG 260 (346)
T ss_pred H--HHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHH--hhc---------cceecCccccceEEEEEeh
Confidence 1 1111111 111 111222221111112232222222111100 011 111111 1222 3444556
Q ss_pred HHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhcc
Q 018191 223 AICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHT 302 (359)
Q Consensus 223 v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~ 302 (359)
+.+.+.| .++.+ +||+=.+-- +.++.+...+++.+--+++|+||- +.|.+ +|.+.++..++..+.
T Consensus 261 vfgfigQ-IllTm-------~lQiErAGp-vaim~~~dvvfAf~wqv~ff~~~P--t~ws~----~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 261 VFGFIGQ-ILLTM-------GLQIERAGP-VAIMTYTDVVFAFFWQVLFFGHWP--TIWSW----VGAVMVVSSTVWVAL 325 (346)
T ss_pred hhhhHHH-HHHHH-------HhhhhccCC-eehhhHHHHHHHHHHHHHHhcCCC--hHHHh----hceeeeehhHHHHHH
Confidence 6666766 46678 888765544 345677788889999999999984 34544 455555655665555
Q ss_pred cCCCC
Q 018191 303 TKDFE 307 (359)
Q Consensus 303 ~~~~~ 307 (359)
.|-..
T Consensus 326 ~kwa~ 330 (346)
T KOG4510|consen 326 KKWAG 330 (346)
T ss_pred HHHhc
Confidence 55433
No 36
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.43 E-value=0.00068 Score=65.29 Aligned_cols=120 Identities=13% Similarity=0.059 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhc---------------CcccCCcccccccchhHH----HHHHHHHHH
Q 018191 6 DNLKGFVLALLSSFFIGSSFIIKKKGLRRAAAAS---------------GVRAGVGGFTYLLEPLWW----VGMAIMIVG 66 (359)
Q Consensus 6 ~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~---------------~~~~g~~~~~~l~~p~W~----~G~~l~~~g 66 (359)
....|..+++.++++.+.+.+..||..++.+... ..-.+...........|+ .|+...+++
T Consensus 147 ~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 147 GNPWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999888432211000 000000000101112232 344455677
Q ss_pred HHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeee
Q 018191 67 EVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVI 125 (359)
Q Consensus 67 ~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~ 125 (359)
..++..++...|.+.+..+..+..+++++++.+++||+++..+++|+++++.|+.+...
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999987643
No 37
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.35 E-value=0.002 Score=53.56 Aligned_cols=91 Identities=15% Similarity=0.078 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccccccchhHHH-HHHHHHHHHHHHHHHHhhchhhhhhchhh-HHHHHH
Q 018191 16 LSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFTYLLEPLWWV-GMAIMIVGEVANFVAYAFAPAVLVTPLGA-LSIIVS 93 (359)
Q Consensus 16 ~ss~~~a~G~vlqk~~~~~~~~~~~~~~g~~~~~~l~~p~W~~-G~~l~~~g~~~~~~Al~~ap~slv~Pl~a-~~li~~ 93 (359)
++.++.-.|....|++ + + ++++.|+. -++++.+++.+-..|+...|.++..++=+ ++.+.+
T Consensus 8 ~Ai~~Ev~~t~~Lk~s----~---g----------f~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~ 70 (105)
T PRK11431 8 IAGLLEVVWAVGLKYT----H---G----------FSRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGA 70 (105)
T ss_pred HHHHHHHHHHHHHHhh----h---C----------CccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 3455566666666653 0 0 23555544 44556778888888899999999999865 999999
Q ss_pred HHHHHHHhcCCCCccchhhHHHHhhhhhee
Q 018191 94 AVLAHFILHEKLPQLGILGCVMCIAGSIII 123 (359)
Q Consensus 94 ~ila~~~L~e~l~~~~~~G~~li~~G~~li 123 (359)
.+.+.++.||+++..+++|+.+++.|++.+
T Consensus 71 ~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 71 AITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999976
No 38
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.24 E-value=0.002 Score=55.32 Aligned_cols=77 Identities=21% Similarity=0.393 Sum_probs=54.4
Q ss_pred chHHHHHHHHH-HHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Q 018191 212 YPDTWFFMLVV-AICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGF 290 (359)
Q Consensus 212 ~~~ty~~l~~~-v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~ 290 (359)
++..|.+++.. +.+.+..+.|+ + ||+.++++.|.|+- -.....+++.+..+++|.... . ...|+
T Consensus 63 ~~k~~lflilSGla~glswl~Yf-~-------ALk~G~as~VvPld-k~svvl~~lls~lfL~E~ls~--~----~~iG~ 127 (140)
T COG2510 63 GPKSWLFLILSGLAGGLSWLLYF-R-------ALKKGKASRVVPLD-KTSVVLAVLLSILFLGERLSL--P----TWIGI 127 (140)
T ss_pred CcceehhhhHHHHHHHHHHHHHH-H-------HHhcCCcceEEEcc-cccHHHHHHHHHHHhcCCCCH--H----HHHHH
Confidence 45555554333 44444444333 5 99999999999984 456677899999999996543 3 34788
Q ss_pred HHHHHhhhhhccc
Q 018191 291 VVVLSGTILLHTT 303 (359)
Q Consensus 291 ~~~~~Gv~lLs~~ 303 (359)
+++.+|+++++++
T Consensus 128 ~LI~~Gailvs~~ 140 (140)
T COG2510 128 VLIVIGAILVSLR 140 (140)
T ss_pred HHHHhCeeeEecC
Confidence 8999999998863
No 39
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.16 E-value=0.003 Score=60.99 Aligned_cols=116 Identities=25% Similarity=0.297 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCcc--------------------cCCc----ccccccchhHH-----H
Q 018191 8 LKGFVLALLSSFFIGSSFIIKKKGLRRAAAASGVR--------------------AGVG----GFTYLLEPLWW-----V 58 (359)
Q Consensus 8 ~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~--------------------~g~~----~~~~l~~p~W~-----~ 58 (359)
..|..+++.++++.+...+++||-.++.+...... .+.. .... .++.+| .
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l 220 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVT-IDMTTILSLMYL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcc-CCHHHHHHHHHH
Confidence 47999999999999999999998532211100000 0000 0000 122222 3
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheee
Q 018191 59 GMAIMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIV 124 (359)
Q Consensus 59 G~~l~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv 124 (359)
|++..++++.+++.++...+..-+.++..+.-+++.+++.+++||+++..+++|.++++.|+.+..
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence 445556777888888888899999999999999999999999999999999999999999998653
No 40
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.0074 Score=50.21 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=61.1
Q ss_pred cchhHHHHH-HHHHHHHHHHHHHHhhchhhhhhch-hhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhhee
Q 018191 52 LEPLWWVGM-AIMIVGEVANFVAYAFAPAVLVTPL-GALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIII 123 (359)
Q Consensus 52 ~~p~W~~G~-~l~~~g~~~~~~Al~~ap~slv~Pl-~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~li 123 (359)
+|+.|.+.+ +.+++++.+-..|+...|+.+..++ .+++.+..++.+.+++||+++..+++|..++++|++.+
T Consensus 28 ~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 28 TRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 355555544 4556778888888999999999886 67899999999999999999999999999999999876
No 41
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.95 E-value=0.0012 Score=63.14 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCc-c--c-----C-C---------ccccc-ccchhH----HHHHHHHH
Q 018191 8 LKGFVLALLSSFFIGSSFIIKKKGLRRAAAASGV-R--A-----G-V---------GGFTY-LLEPLW----WVGMAIMI 64 (359)
Q Consensus 8 ~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~-~--~-----g-~---------~~~~~-l~~p~W----~~G~~l~~ 64 (359)
..|..+++.++++.+.+.++.|+...+.+..... . . + . +.... ...+.| +.+.+..+
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 222 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIG 222 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 3577789999999999998888753221110000 0 0 0 0 00000 011122 23444456
Q ss_pred HHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhhe
Q 018191 65 VGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSII 122 (359)
Q Consensus 65 ~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~l 122 (359)
+++.+++.++...|.+.+.++.-++.+++.+++.+++||+++..+++|.+++++|+.+
T Consensus 223 l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 223 GAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 7888999999999999999999999999999999999999999999999999999875
No 42
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.82 E-value=0.12 Score=50.16 Aligned_cols=122 Identities=24% Similarity=0.239 Sum_probs=78.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh----hHHHhhhhc-------------CcccCCcccccccchhHHHHHHHHHHHH
Q 018191 5 KDNLKGFVLALLSSFFIGSSFIIKKK----GLRRAAAAS-------------GVRAGVGGFTYLLEPLWWVGMAIMIVGE 67 (359)
Q Consensus 5 ~~~~iGv~LAl~ss~~~a~G~vlqk~----~~~~~~~~~-------------~~~~g~~~~~~l~~p~W~~G~~l~~~g~ 67 (359)
.+.--|+++++.+.++-+.-....|. +..+.-.+- -.|.-...++..++|+=+..+.+..+=.
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 45567899999999887766544443 111100000 0010012345678887777777776666
Q ss_pred HHHHHHHhhchhh---hhhchhh-HHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeee
Q 018191 68 VANFVAYAFAPAV---LVTPLGA-LSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIH 126 (359)
Q Consensus 68 ~~~~~Al~~ap~s---lv~Pl~a-~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~ 126 (359)
..|..-+-.+|-. +=+.+|= +.-++|.++++.++|||+++.+|+++.+..+|+......
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 6787777777755 2222221 223577899999999999999999999999999865443
No 43
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.80 E-value=0.0062 Score=56.83 Aligned_cols=117 Identities=22% Similarity=0.280 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCcc------c----------CCcccccccchhH--HHHHHHHHHHHHH
Q 018191 8 LKGFVLALLSSFFIGSSFIIKKKGLRRAAAASGVR------A----------GVGGFTYLLEPLW--WVGMAIMIVGEVA 69 (359)
Q Consensus 8 ~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~------~----------g~~~~~~l~~p~W--~~G~~l~~~g~~~ 69 (359)
..|..+++.++++.+...++.|+-. +........ . ........+...+ +.|++..+++..+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999998643 111000000 0 0000011111111 2333444457888
Q ss_pred HHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeee
Q 018191 70 NFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVI 125 (359)
Q Consensus 70 ~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~ 125 (359)
++.++...|...++|+..+..+++.+++.++++|+++..+++|+++++.|+.+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999987644
No 44
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.71 E-value=0.017 Score=48.24 Aligned_cols=106 Identities=14% Similarity=0.204 Sum_probs=68.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccCceeecchhH
Q 018191 178 FIGICSLMGSLSVMSVKALGTSLKLTFEGKNQLLYPDTWFFMLVVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYY 257 (359)
Q Consensus 178 y~~i~gl~g~~tvl~~K~v~~~l~~~~~g~~~~~~~~ty~~l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~ 257 (359)
|..++.++.....++.|.-... .+..+++|.........+.+...-..++.. ++++-|.++.+|+.+
T Consensus 5 ~l~~ai~~ev~g~~~lK~s~~~------~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-------al~~iplg~Ay~~~~ 71 (111)
T PRK15051 5 TLVFASLLSVAGQLCQKQATRP------VAIGKRRKHIVLWLGLALACLGLAMVLWLL-------VLQNVPVGIAYPMLS 71 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc------CCcchhhhHHHHHHHHHHHHHHHHHHHHHH-------HHhhCChHHHHHHHH
Confidence 4444544444444555642210 011244554334444444444445666677 999999999999998
Q ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhccc
Q 018191 258 VMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTT 303 (359)
Q Consensus 258 v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~ 303 (359)
.-.+.+.+.|..+|||..+ +. ..+|.+++++|+++++++
T Consensus 72 -l~~v~~~~~~~l~f~E~ls--~~----~~~Gi~lii~Gv~~i~~~ 110 (111)
T PRK15051 72 -LNFVWVTLAAVKLWHEPVS--PR----HWCGVAFIIGGIVILGST 110 (111)
T ss_pred -HHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHHHHHHHHhcc
Confidence 6777789999999999654 44 447778889999998865
No 45
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.33 E-value=0.045 Score=45.84 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=60.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Q 018191 210 LLYPDTWFFMLVVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICG 289 (359)
Q Consensus 210 ~~~~~ty~~l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G 289 (359)
|++|.+....++. ...-.+++.+ |+++-|..+.+|+-...=++...+.|.++|||..+ +. -..|
T Consensus 27 f~~~~~~i~~~~~---~~~sf~~l~~-------al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~--~~----~~~g 90 (110)
T PRK09541 27 FTRLWPSVGTIIC---YCASFWLLAQ-------TLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD--LP----AIIG 90 (110)
T ss_pred CCchhHHHHHHHH---HHHHHHHHHH-------HHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC--HH----HHHH
Confidence 6777776654333 3334667778 99999999999988877888899999999999654 43 4577
Q ss_pred HHHHHHhhhhhcccC
Q 018191 290 FVVVLSGTILLHTTK 304 (359)
Q Consensus 290 ~~~~~~Gv~lLs~~~ 304 (359)
..+++.|++++....
T Consensus 91 i~lIi~GVi~l~l~~ 105 (110)
T PRK09541 91 MMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHhcCC
Confidence 788999999996544
No 46
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.23 E-value=0.36 Score=48.06 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCC
Q 018191 55 LWWVGMAIMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQE 130 (359)
Q Consensus 55 ~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~ 130 (359)
.|-+=.++|.+-+-+++++++..|...-+...-+-++.++++...+|++|+++++|...++..+|+.++=+..+.+
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~ 169 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP 169 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 3445557888877799999999999999999999999999999999999999999999999999999886433333
No 47
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.15 E-value=0.0094 Score=57.56 Aligned_cols=63 Identities=13% Similarity=-0.036 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeee
Q 018191 64 IVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIH 126 (359)
Q Consensus 64 ~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~ 126 (359)
.+++.+++.+++..|.+.++++.-+..+++.+++.++++|+++...++|++++++|+.++...
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999999999999999999999988876543
No 48
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.86 E-value=0.084 Score=43.85 Aligned_cols=79 Identities=10% Similarity=0.188 Sum_probs=60.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH
Q 018191 209 QLLYPDTWFFMLVVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEIC 288 (359)
Q Consensus 209 ~~~~~~ty~~l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~ 288 (359)
.|+++.++++.++.. ..=.+++.+ |++.-|..+.+++-...=+..+.+.|.++|+|..+ +. ..+
T Consensus 25 gf~~~~~~~~~i~~~---~~sf~~Ls~-------al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~--~~----~~~ 88 (105)
T PRK11431 25 GFSRLTPSIITVTAM---IVSMALLAW-------AMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESAS--PA----RLL 88 (105)
T ss_pred CCccHHHHHHHHHHH---HHHHHHHHH-------HHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCC--HH----HHH
Confidence 377888777664443 333677888 99999999988888888888899999999999654 43 446
Q ss_pred HHHHHHHhhhhhccc
Q 018191 289 GFVVVLSGTILLHTT 303 (359)
Q Consensus 289 G~~~~~~Gv~lLs~~ 303 (359)
|+.+++.|++.|...
T Consensus 89 gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 89 SLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHhhhcc
Confidence 778899999998543
No 49
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=95.73 E-value=0.062 Score=46.21 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHH-HHhcccCCCCHHHHHHHHHHHHHHHHhhhh
Q 018191 221 VVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASV-IMFKDWDGQTAASIISEICGFVVVLSGTIL 299 (359)
Q Consensus 221 ~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~-i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~l 299 (359)
.++++...-..+.+. +|++.|.++.+|+....+....+.+-. ++|+|... +. ..+|.+++++|+++
T Consensus 53 lgl~~~~la~~~w~~-------aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls--~~----~~iGi~lIi~GV~l 119 (129)
T PRK02971 53 LGLAGYALSMLCWLK-------ALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFS--LK----KTLGVACIMLGVWL 119 (129)
T ss_pred HHHHHHHHHHHHHHH-------HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HH----HHHHHHHHHHHHHH
Confidence 344455555667778 999999999999988777544444433 48999654 33 55888899999999
Q ss_pred hcccCCC
Q 018191 300 LHTTKDF 306 (359)
Q Consensus 300 Ls~~~~~ 306 (359)
++++++.
T Consensus 120 v~~~~~~ 126 (129)
T PRK02971 120 INLPTTK 126 (129)
T ss_pred hccCCCC
Confidence 9876553
No 50
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.67 E-value=0.35 Score=48.59 Aligned_cols=66 Identities=23% Similarity=0.320 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCC
Q 018191 66 GEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQES 131 (359)
Q Consensus 66 g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~ 131 (359)
.+...=+||++-..+-.+=+.+.|=+|++.+|.++.+||++..+.+++++.+.|++++.....++.
T Consensus 172 anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 172 ANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 344444678898888899999999999999999999999999999999999999999988765443
No 51
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=95.64 E-value=0.13 Score=43.74 Aligned_cols=67 Identities=16% Similarity=0.304 Sum_probs=53.4
Q ss_pred HHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhcccCC
Q 018191 226 VIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTTKD 305 (359)
Q Consensus 226 ~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~~~ 305 (359)
...=.+++.+ |++.-|..+.+|+..-.=++...+.|.++|+|..+ .. -.+|..+++.|++.+....+
T Consensus 40 ~~~sf~~ls~-------al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s--~~----~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 40 ISLSYIFLSF-------AVKKIALGVAYALWEGIGILFITLFSVLLFDESLS--LM----KIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHH-------HHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHHHHHHHhhcCCC
Confidence 3334677888 99999999999998777888889999999999654 33 45788889999999865553
No 52
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=95.40 E-value=0.14 Score=42.92 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=59.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH
Q 018191 209 QLLYPDTWFFMLVVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEIC 288 (359)
Q Consensus 209 ~~~~~~ty~~l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~ 288 (359)
.|++|.+.+..++.. ..=.+++.+ |+++-|..+.+|+-.-.-+....+.|.++|+|..+ +. ...
T Consensus 31 gf~~~~~~~~~~~~~---~~sf~~Ls~-------al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~--~~----~~~ 94 (109)
T PRK10650 31 GFRRKIYGILSLAAV---LAAFSALSQ-------AVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLN--RK----GWI 94 (109)
T ss_pred CCcchHHHHHHHHHH---HHHHHHHHH-------HHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HH----HHH
Confidence 377887766554443 223678888 99999999988888888889999999999999654 33 446
Q ss_pred HHHHHHHhhhhhc
Q 018191 289 GFVVVLSGTILLH 301 (359)
Q Consensus 289 G~~~~~~Gv~lLs 301 (359)
|..+++.|++.|.
T Consensus 95 gi~lIi~GVi~lk 107 (109)
T PRK10650 95 GLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHhc
Confidence 7778889998874
No 53
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.30 E-value=0.041 Score=53.23 Aligned_cols=117 Identities=21% Similarity=0.158 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcC-ccc-----CC----ccc---ccccchhHH----HHHHHHHHHHHH
Q 018191 7 NLKGFVLALLSSFFIGSSFIIKKKGLRRAAAASG-VRA-----GV----GGF---TYLLEPLWW----VGMAIMIVGEVA 69 (359)
Q Consensus 7 ~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~-~~~-----g~----~~~---~~l~~p~W~----~G~~l~~~g~~~ 69 (359)
...|+..++.|+++++.-...-|+.. ..+.... +.. +. ... +-..++.+| .|+. ..+++.+
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~ 227 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAFG-VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFF 227 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC-CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 36799999999999988887777531 0000000 000 00 000 111122333 4444 4677888
Q ss_pred HHHHHh-hchhhhhhchhhHHHHHHHHHHHHHhcCCCCccch----hhHHHHhhhhheeee
Q 018191 70 NFVAYA-FAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGI----LGCVMCIAGSIIIVI 125 (359)
Q Consensus 70 ~~~Al~-~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~----~G~~li~~G~~liv~ 125 (359)
.+.+.. ..+.+...++..+..+.+.+.+.+++||+.+++++ +|+++++.|+.++..
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 888888 99999999999999999999999999999999999 999999999987643
No 54
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.30 E-value=0.088 Score=52.35 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=80.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhc-------------CcccC-CcccccccchhHHHHHHHHHHHH-HH
Q 018191 5 KDNLKGFVLALLSSFFIGSSFIIKKKGLRRAAAAS-------------GVRAG-VGGFTYLLEPLWWVGMAIMIVGE-VA 69 (359)
Q Consensus 5 ~~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~-------------~~~~g-~~~~~~l~~p~W~~G~~l~~~g~-~~ 69 (359)
++.++|-++++.|++++|+..++|++-.++.+... ..-.. .+ +.-+.+-.|=.......+|+ ++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile-~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILE-RSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhee-hhhhhccCCChhhHHHHHHHHHH
Confidence 56789999999999999999999999766533221 00000 00 01111111211222233333 45
Q ss_pred HHHHHhhchhhhh-------hchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCCC
Q 018191 70 NFVAYAFAPAVLV-------TPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQESP 132 (359)
Q Consensus 70 ~~~Al~~ap~slv-------~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~~ 132 (359)
.+.-|...|..+. .-=...+-++++++..++.|+++++.-++|.+++++|.++.....+++++
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 5666666665432 11123457888999999999999999999999999999988766655443
No 55
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=95.15 E-value=0.13 Score=43.93 Aligned_cols=113 Identities=21% Similarity=0.355 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHh----h-hhc-----------------------CcccCCccccccc-----chhH
Q 018191 10 GFVLALLSSFFIGSSFIIKKKGLRRA----A-AAS-----------------------GVRAGVGGFTYLL-----EPLW 56 (359)
Q Consensus 10 Gv~LAl~ss~~~a~G~vlqk~~~~~~----~-~~~-----------------------~~~~g~~~~~~l~-----~p~W 56 (359)
|.++++.|+++.++=.+++|+..++. . .++ ..+.........+ .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67889999999999999999877663 1 110 0000000000111 1122
Q ss_pred HHHHHHH-H---HHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhhe
Q 018191 57 WVGMAIM-I---VGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSII 122 (359)
Q Consensus 57 ~~G~~l~-~---~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~l 122 (359)
+.-++.. + .-+..++..+.........=++.+--+...+++..+++|+++..++.|++++++|+.+
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 2222222 2 2334555566667777777888899999999999999999999999999999999874
No 56
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=94.79 E-value=0.054 Score=52.21 Aligned_cols=118 Identities=17% Similarity=0.262 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCccc-------CC----------cccccc----c--------chhH
Q 018191 6 DNLKGFVLALLSSFFIGSSFIIKKKGLRRAAAASGVRA-------GV----------GGFTYL----L--------EPLW 56 (359)
Q Consensus 6 ~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~~-------g~----------~~~~~l----~--------~p~W 56 (359)
.+..|.++++.|+++.++..++.||-..+.+.++ ..- +. +..... . ...|
T Consensus 142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (302)
T TIGR00817 142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDK-TNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIY 220 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc-ccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHH
Confidence 4567999999999999999999888543111110 000 00 000000 0 0112
Q ss_pred HHHHH----HHHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheee
Q 018191 57 WVGMA----IMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIV 124 (359)
Q Consensus 57 ~~G~~----l~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv 124 (359)
..+.. .+...+..++.++...+.+...-.+.+--+++.+++.++++|+++..+++|.++++.|+.+.-
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 221 TVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 11211 122222345567788888888888888889999999999999999999999999999998653
No 57
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=94.74 E-value=1 Score=43.93 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeee
Q 018191 56 WWVGMAIMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIH 126 (359)
Q Consensus 56 W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~ 126 (359)
...=.++.+.|..+..++|-+-.++--|-+=+.-++|..+++..+||++++.++|+|+..+..|++.+...
T Consensus 89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 34456888999999999999999999999999999999999999999999999999999999999988765
No 58
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=94.50 E-value=0.31 Score=46.68 Aligned_cols=124 Identities=20% Similarity=0.222 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcC--------------cccCCcccccccch-hHHHHHHHHHHH----
Q 018191 6 DNLKGFVLALLSSFFIGSSFIIKKKGLRRAAAASG--------------VRAGVGGFTYLLEP-LWWVGMAIMIVG---- 66 (359)
Q Consensus 6 ~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~--------------~~~g~~~~~~l~~p-~W~~G~~l~~~g---- 66 (359)
-...|+.+|+.+..|-+.=.+.-||.-+..+...+ ....+.+ ..+.+| .-..++..-+.+
T Consensus 145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag-~~l~~p~ll~laLgvavlSSalP 223 (292)
T COG5006 145 LDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAG-PALFSPSLLPLALGVAVLSSALP 223 (292)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcc-hhhcChHHHHHHHHHHHHhcccc
Confidence 34589999999999988777776664321110000 0001112 233343 334455444443
Q ss_pred HHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCC
Q 018191 67 EVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQE 130 (359)
Q Consensus 67 ~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~ 130 (359)
+.+..+|++..|...-.-+.++.-.+.++.+..+|||++|..+|+|+++++.++.-......++
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence 4688999999999999999999999999999999999999999999999999998665544433
No 59
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.43 E-value=0.4 Score=46.30 Aligned_cols=86 Identities=21% Similarity=0.292 Sum_probs=64.2
Q ss_pred hHHHHH-HHHHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Q 018191 213 PDTWFF-MLVVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFV 291 (359)
Q Consensus 213 ~~ty~~-l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~ 291 (359)
+..+.+ ++.++.-.+-|..-+ + +.+.-..+...|+...+--+.+.+.|+++|+||...+ ++..=.++++
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf-~-------s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~--~~~~G~~Al~ 111 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQF-K-------SFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTT--QKIIGFLALV 111 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-H-------HHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcc--hHHHHHHHHH
Confidence 344443 344444466665544 4 6777888999999999999999999999999998643 6666667889
Q ss_pred HHHHhhhhhcccCCCCC
Q 018191 292 VVLSGTILLHTTKDFER 308 (359)
Q Consensus 292 ~~~~Gv~lLs~~~~~~~ 308 (359)
+++.|+++-+.+++.++
T Consensus 112 liiiGv~lts~~~~~~~ 128 (269)
T PF06800_consen 112 LIIIGVILTSYQDKKSD 128 (269)
T ss_pred HHHHHHHHhcccccccc
Confidence 99999998777665554
No 60
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=94.08 E-value=0.5 Score=39.38 Aligned_cols=78 Identities=21% Similarity=0.182 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Q 018191 210 LLYPDTWFFMLVVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICG 289 (359)
Q Consensus 210 ~~~~~ty~~l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G 289 (359)
|+.+.+++..++.. ..-.++|.+ |++.-|..+.+++-.-.=+..+.+.|.++|+|..+ +. -..|
T Consensus 27 f~~~~~~il~~v~~---~~sf~~Ls~-------alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~--~~----~~~g 90 (106)
T COG2076 27 FTRLWPSILTIVGY---GLSFYLLSL-------ALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLS--LI----KLLG 90 (106)
T ss_pred ccccchHHHHHHHH---HHHHHHHHH-------HHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCC--HH----HHHH
Confidence 56666665444332 223667778 99999999988888888889999999999999654 33 4467
Q ss_pred HHHHHHhhhhhccc
Q 018191 290 FVVVLSGTILLHTT 303 (359)
Q Consensus 290 ~~~~~~Gv~lLs~~ 303 (359)
..++++|++.|...
T Consensus 91 l~LiiaGvi~Lk~~ 104 (106)
T COG2076 91 LALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHhhhc
Confidence 78899999988654
No 61
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.02 E-value=0.3 Score=39.37 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=31.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHH
Q 018191 210 LLYPDTWFFMLVVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIIS 285 (359)
Q Consensus 210 ~~~~~ty~~l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~ 285 (359)
++++.++...++ +...-.+++.+ |+++-|.++.+|+....=+....+.|..+|+|..+ +.++..
T Consensus 26 ~~~~~~~~~~~~---~~~~s~~~l~~-------al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s--~~~~~g 89 (93)
T PF00893_consen 26 FTQLIPTILAVV---GYGLSFYFLSL-------ALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLS--LSKWLG 89 (93)
T ss_dssp --------HHHH---HHHHHHHHHHH-------HH-------HHHHHHHHHHHHHHHHHHHHH----------HHH
T ss_pred hcchhhHHHHHH---HHHHHHHHHHH-------HHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCC--HHHHhh
Confidence 555555544332 44444678889 99999999999999988889999999999999654 444443
No 62
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=93.32 E-value=1 Score=37.08 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=42.9
Q ss_pred hhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 018191 243 ALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTTKDFE 307 (359)
Q Consensus 243 AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~~~~~ 307 (359)
|+++.+ ..+.|+ +...++++.+.|.++|+|. .++. ...|.+++.+|++++..++...
T Consensus 55 a~~~~~-~~v~~i-~~~~pi~~~ll~~~~~~er--~~~~----~~~a~~l~~~Gv~li~~~~~~~ 111 (113)
T PF13536_consen 55 ALSYAP-ALVAAI-FSLSPIFTALLSWLFFKER--LSPR----RWLAILLILIGVILIAWSDLTG 111 (113)
T ss_pred HHHhCc-HHHHHH-HHHHHHHHHHHHHHHhcCC--CCHH----HHHHHHHHHHHHHHHhhhhccc
Confidence 888888 455654 5569999999999999994 4444 3456778889999988776544
No 63
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=92.26 E-value=2.9 Score=40.71 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc-hhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCC
Q 018191 54 PLWWVGMAIMIVGEVANFVAYAFA-PAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQES 131 (359)
Q Consensus 54 p~W~~G~~l~~~g~~~~~~Al~~a-p~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~ 131 (359)
+.|..=..++..-++.|=.|+.|. |.-+=.=+=+-+++.|.+++..++|.|-+.+++..++++.+|+++.-.+..++.
T Consensus 65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~ 143 (330)
T KOG1583|consen 65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDG 143 (330)
T ss_pred hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcch
Confidence 345444455555566676677653 222222245778999999999999999999999999999999998877765543
No 64
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=92.04 E-value=0.5 Score=43.46 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhc-------------------CcccCC--cccccc--cchhHHHHHHH
Q 018191 6 DNLKGFVLALLSSFFIGSSFIIKKKGLRRAAAAS-------------------GVRAGV--GGFTYL--LEPLWWVGMAI 62 (359)
Q Consensus 6 ~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~-------------------~~~~g~--~~~~~l--~~p~W~~G~~l 62 (359)
+.+.|+...+.+.++.+..-+.|+++.++.+... ..+++. ...... ..+.+|.=.++
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 4567777777788888888888888755321000 000000 001111 12334444455
Q ss_pred HHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhh
Q 018191 63 MIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSI 121 (359)
Q Consensus 63 ~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~ 121 (359)
.+++.++-...+.+++.....=...+..+++.+++.++.+|+++...|.|+.++..|+.
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 56666666667788888899999999999999999999999999999999999998865
No 65
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=91.93 E-value=5.3 Score=37.24 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=54.1
Q ss_pred HHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeee
Q 018191 67 EVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIH 126 (359)
Q Consensus 67 ~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~ 126 (359)
+-....||.....+.+..+.+..-.|..+++...||+|+...+++..++.+.|++++...
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 446678888999999999999999999999999999999999999999999999887653
No 66
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=91.52 E-value=16 Score=36.51 Aligned_cols=285 Identities=14% Similarity=0.205 Sum_probs=146.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhHH----H------------hhhhc---CcccCCccccccc----chhHHHH
Q 018191 3 FSKDNLKGFVLALLSSFFIGSSFIIKKKGLR----R------------AAAAS---GVRAGVGGFTYLL----EPLWWVG 59 (359)
Q Consensus 3 ~~~~~~iGv~LAl~ss~~~a~G~vlqk~~~~----~------------~~~~~---~~~~g~~~~~~l~----~p~W~~G 59 (359)
|....++|++...+++++.+.-.+=.||--. . .+-.- ... +..++++ +-+|+.-
T Consensus 1 m~~~ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv~gi~swli~P~~~a~l~ip---~~~~i~~~~~~~~l~~~~ 77 (344)
T PF06379_consen 1 MNSAIILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLVQGIFSWLIVPWLWALLAIP---DFFSIYSATPASTLFWTF 77 (344)
T ss_pred CCchHHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHhCChhHHHHHH
Confidence 5567889999999999998877766665211 0 00000 000 0111221 1222222
Q ss_pred H--HHHHHHHHHHHHHHhhchhhhhhchh-hHHHHHHHHHHHHHhcC-------CCCccchhhHHHHhhhhheeeeecCC
Q 018191 60 M--AIMIVGEVANFVAYAFAPAVLVTPLG-ALSIIVSAVLAHFILHE-------KLPQLGILGCVMCIAGSIIIVIHAPQ 129 (359)
Q Consensus 60 ~--~l~~~g~~~~~~Al~~ap~slv~Pl~-a~~li~~~ila~~~L~e-------~l~~~~~~G~~li~~G~~liv~~a~~ 129 (359)
+ ++-.+|.+..-.+..+.-.|+-+.+. .++.++..++-+.+.++ +-.+..++|++++.+|++++...+..
T Consensus 78 l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 78 LFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Confidence 1 11234555555566666666666542 45556666666666543 22335578999999999998777643
Q ss_pred CCCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHhh---cc------cCCCchhHHHHHH----HHhhhhHHHHHHHHH
Q 018191 130 ESPITSVQEIWSLATQPAFLLYVASVIVLVFILIFHF---AP------RCGNTNALVFIGI----CSLMGSLSVMSVKAL 196 (359)
Q Consensus 130 ~~~~~s~~el~~~~~~~~fl~y~~~~~~~~~~li~~~---~~------r~g~~~~~~y~~i----~gl~g~~tvl~~K~v 196 (359)
.++..+. |-.+.-- ..-+.-+++..+.....-+-. .| ..|... .|... --+.||+.+-..=++
T Consensus 158 Ke~~~~~-~~~efn~-~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~--l~~~l~~~vvv~~GGf~tN~~yc~ 233 (344)
T PF06379_consen 158 KEKELGE-EAKEFNF-KKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNP--LYANLPVYVVVLWGGFITNLIYCL 233 (344)
T ss_pred hhhhhcc-chhhhhh-hhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCc--HHHhCchhhhhhhhHHHHHHHHHH
Confidence 3222221 1111111 111222222222221111111 11 112111 11111 113444443333333
Q ss_pred HHHHH-HhhcCCcccc---ch--HHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccC--ceeecchhHHHHHHHHHHHH
Q 018191 197 GTSLK-LTFEGKNQLL---YP--DTWFFMLVVAICVIMQMNYLNKESQMMLQALDTFN--TAVVSPIYYVMFTSLTILAS 268 (359)
Q Consensus 197 ~~~l~-~~~~g~~~~~---~~--~ty~~l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~--~~~v~Pv~~v~~t~~~i~~G 268 (359)
-...+ .+.+.++.+. ++ .-|++.+..-+.=..|..++.. . +=+..| ...--++...+..+++.+.|
T Consensus 234 ~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~-G-----~s~lg~~~~~~sW~i~ma~~vl~snvwG 307 (344)
T PF06379_consen 234 ILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGM-G-----ESKLGASGPFSSWAIHMALIVLFSNVWG 307 (344)
T ss_pred HHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH-H-----HHHhcCccccHHHHHHHHHHHHHHHHHH
Confidence 32222 1121111221 22 3467777677778889888866 1 111222 23456677777777777777
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhc
Q 018191 269 VIMFKDWDGQTAASIISEICGFVVVLSGTILLH 301 (359)
Q Consensus 269 ~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs 301 (359)
+.++||++.+......+.+|+++++..++++.
T Consensus 308 -l~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG 339 (344)
T PF06379_consen 308 -LILKEWKGASKKTIRVLVLGIAVLILSVVIVG 339 (344)
T ss_pred -HHHHHhccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 67899999998888889999999998888764
No 67
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=91.47 E-value=0.27 Score=39.76 Aligned_cols=67 Identities=13% Similarity=0.280 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 018191 221 VVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILL 300 (359)
Q Consensus 221 ~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lL 300 (359)
..+.+...-....++ |+++.+++.+.++.+ ..++.+.+.|.++++|.. ++. ...|.++++.|++++
T Consensus 59 ~~~~~~~~~~~~~~~-------a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~--~~~----~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 59 LGLLGTALAYLLYFY-------ALKYISASIVSILQY-LSPVFAAILGWLFLGERP--SWR----QIIGIILIIIGVVLI 124 (126)
T ss_pred hhccceehHHHHHHH-------HHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCC--CHH----HHHHHHHHHHHHHHH
Confidence 333333333455677 999999999998877 799999999999999964 343 456666777777765
Q ss_pred c
Q 018191 301 H 301 (359)
Q Consensus 301 s 301 (359)
.
T Consensus 125 ~ 125 (126)
T PF00892_consen 125 S 125 (126)
T ss_pred H
Confidence 3
No 68
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=90.41 E-value=0.38 Score=40.09 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=64.3
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhhchhhhhhchh-hHHHHHHHHHHHHHhcCCCCc-cchhhHHHHhhhhheee
Q 018191 47 GFTYLLEPLWWVGMAIMIVGEVANFVAYAFAPAVLVTPLG-ALSIIVSAVLAHFILHEKLPQ-LGILGCVMCIAGSIIIV 124 (359)
Q Consensus 47 ~~~~l~~p~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~-a~~li~~~ila~~~L~e~l~~-~~~~G~~li~~G~~liv 124 (359)
.+.++.++..|+=+.+---|..+.+.-|+-+|.++.-|+. ++++.|+++++..+ +|+... +-++|+.+++.|+.+.+
T Consensus 46 ~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 46 MKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhhee
Confidence 4567778899999999999999999999999999999985 67889999988765 666654 55789999999987654
No 69
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=89.58 E-value=1.8 Score=35.92 Aligned_cols=48 Identities=19% Similarity=0.412 Sum_probs=39.0
Q ss_pred hhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCC
Q 018191 81 LVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQ 129 (359)
Q Consensus 81 lv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~ 129 (359)
+-+.-|.+-++.+++-....-|.+.+++||+|.+.|.+|+.++ .++|.
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vi-l~~pR 107 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVI-LFGPR 107 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeee-EeCCC
Confidence 3455677778888888999999999999999999999996544 55654
No 70
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=88.36 E-value=1.5 Score=43.36 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeee
Q 018191 64 IVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVI 125 (359)
Q Consensus 64 ~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~ 125 (359)
.+|-++.-.++...|.+..|-+-++..++++++++++.+|+.++..+.-...++.|+.+-..
T Consensus 94 ~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 94 CISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred HHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 46667778899999999999999999999999999999999999999988888888886544
No 71
>PRK02237 hypothetical protein; Provisional
Probab=88.28 E-value=2.4 Score=35.39 Aligned_cols=47 Identities=17% Similarity=0.355 Sum_probs=39.0
Q ss_pred hhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCC
Q 018191 82 VTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQ 129 (359)
Q Consensus 82 v~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~ 129 (359)
-+--|.+=++.+.+-...+-|+|.++.|++|..+|.+|+.++. ++|.
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~-~~pR 108 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM-YAPR 108 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe-ecCC
Confidence 3445677788888899999999999999999999999998764 5553
No 72
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=85.46 E-value=3.6 Score=34.66 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=40.4
Q ss_pred hhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhh
Q 018191 243 ALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTIL 299 (359)
Q Consensus 243 AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~l 299 (359)
.|.+.|-++.+|+.+..--+++++.|..+.+|..+-. -..|+.++++|+.+
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVAL 111 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeee
Confidence 6777999999999988888899999977777754321 35778888888865
No 73
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=83.91 E-value=29 Score=36.43 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=23.5
Q ss_pred HhhcccCCCchhHHHHHHHHhhhhHHHHHHHH
Q 018191 164 FHFAPRCGNTNALVFIGICSLMGSLSVMSVKA 195 (359)
Q Consensus 164 ~~~~~r~g~~~~~~y~~i~gl~g~~tvl~~K~ 195 (359)
...+.|+|+|+.+....+-+++++......|.
T Consensus 81 ~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~ 112 (485)
T KOG0569|consen 81 GLLADRFGRKNALLLSNLLAVLAALLMGLSKS 112 (485)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999998887777777777776666664
No 74
>PRK13499 rhamnose-proton symporter; Provisional
Probab=83.71 E-value=31 Score=34.61 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCC-CCHHHHHHHHHHHHHHHHhhhhh
Q 018191 222 VAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDG-QTAASIISEICGFVVVLSGTILL 300 (359)
Q Consensus 222 ~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~-~~~~~~~~~~~G~~~~~~Gv~lL 300 (359)
++.-.+-|+.+. + +.+.--.+.-.|+..-.-.+.+.+.+.++|+||.. .+..+...-..|.++++.|+.+-
T Consensus 80 G~~W~iG~i~~~-~-------s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~ 151 (345)
T PRK13499 80 GALWGIGGITYG-L-------TMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIV 151 (345)
T ss_pred HHHHHhhhhhHH-H-------HHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 344456665554 3 67777788889999999999999999999999972 12235555889999999999998
Q ss_pred cc
Q 018191 301 HT 302 (359)
Q Consensus 301 s~ 302 (359)
+.
T Consensus 152 s~ 153 (345)
T PRK13499 152 GR 153 (345)
T ss_pred HH
Confidence 87
No 75
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=83.38 E-value=0.91 Score=43.43 Aligned_cols=86 Identities=21% Similarity=0.275 Sum_probs=64.0
Q ss_pred ccchHHHHHHHHH-HHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH
Q 018191 210 LLYPDTWFFMLVV-AICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEIC 288 (359)
Q Consensus 210 ~~~~~ty~~l~~~-v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~ 288 (359)
..+++.+.+-++. ..=.+-|.+-+ | |.+.-..+...|+..-+.-+.+-+.|++.|+||.+ +.+.+.=..
T Consensus 53 ~~T~~~~iv~~isG~~Ws~GQ~~Qf-k-------a~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t--~~~~IlG~i 122 (288)
T COG4975 53 ELTLTIFIVGFISGAFWSFGQANQF-K-------AIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTT--PTQIILGFI 122 (288)
T ss_pred ccchhhHHHHHHhhhHhhhhhhhhh-h-------heeeeeeeccccccchhhHhhceeeeEEEEeccCc--chhHHHHHH
Confidence 3445555443333 22366676665 5 67777888899999999999999999999999986 457777778
Q ss_pred HHHHHHHhhhhhcccCC
Q 018191 289 GFVVVLSGTILLHTTKD 305 (359)
Q Consensus 289 G~~~~~~Gv~lLs~~~~ 305 (359)
+.++++.|+++=+..++
T Consensus 123 AliliviG~~lTs~~~~ 139 (288)
T COG4975 123 ALILIVIGIYLTSKQDR 139 (288)
T ss_pred HHHHHHHhheEeeeecc
Confidence 88899999998665554
No 76
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=82.82 E-value=0.78 Score=43.86 Aligned_cols=222 Identities=14% Similarity=0.227 Sum_probs=129.3
Q ss_pred cccchhHHHHHHHH---HHHHHHHHHHHhhchhhhhhchh-hHHHHHHHHHHHHHhcCCCCccch----hhHHHHhhhhh
Q 018191 50 YLLEPLWWVGMAIM---IVGEVANFVAYAFAPAVLVTPLG-ALSIIVSAVLAHFILHEKLPQLGI----LGCVMCIAGSI 121 (359)
Q Consensus 50 ~l~~p~W~~G~~l~---~~g~~~~~~Al~~ap~slv~Pl~-a~~li~~~ila~~~L~e~l~~~~~----~G~~li~~G~~ 121 (359)
.++-..|..|++-- .+|+..||-|......|...|+. +..++-+.+++.+.+||=-+..++ ++.+++++|..
T Consensus 53 ~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~ 132 (288)
T COG4975 53 ELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIY 132 (288)
T ss_pred ccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhhe
Confidence 34445677777544 47889999999999999999996 678999999999999998887764 46788888988
Q ss_pred eeeeecCCCCCCCCHHHHHHHhcChhHHHHHHHHHHH--HHHHHHhhcccCCCchhHHHHHHHHhhhhHHHHHHHHHHHH
Q 018191 122 IIVIHAPQESPITSVQEIWSLATQPAFLLYVASVIVL--VFILIFHFAPRCGNTNALVFIGICSLMGSLSVMSVKALGTS 199 (359)
Q Consensus 122 liv~~a~~~~~~~s~~el~~~~~~~~fl~y~~~~~~~--~~~li~~~~~r~g~~~~~~y~~i~gl~g~~tvl~~K~v~~~ 199 (359)
+-..-.+.+++..+++.+.+ ......+ +....|.+..+. +- +.+.++++-++++-.
T Consensus 133 lTs~~~~~nk~~~~~~n~kk----------gi~~L~iSt~GYv~yvvl~~~-----f~-------v~g~saiLPqAiGMv 190 (288)
T COG4975 133 LTSKQDRNNKEEENPSNLKK----------GIVILLISTLGYVGYVVLFQL-----FD-------VDGLSAILPQAIGMV 190 (288)
T ss_pred EeeeeccccccccChHhhhh----------heeeeeeeccceeeeEeeecc-----cc-------ccchhhhhHHHHHHH
Confidence 87776655555555444333 1111100 000001111111 00 333444444443321
Q ss_pred H---HHhhcCCccccchHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccC
Q 018191 200 L---KLTFEGKNQLLYPDTWFFMLVVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWD 276 (359)
Q Consensus 200 l---~~~~~g~~~~~~~~ty~~l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~ 276 (359)
+ .......+-..+-.+|.-++.++.-..--+.++-. +=+.+-++- ..+-|.. .+.+.++|..+++|.+
T Consensus 191 ~~ali~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a-------~~~~GvAt~-FSlSQlg-ViisTiGGIl~L~ekK 261 (288)
T COG4975 191 IGALILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLA-------AQKVGVATS-FSLSQLG-VIISTIGGILFLGEKK 261 (288)
T ss_pred HHHHHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHh-------hhhhceeee-eeHhhhe-eeeeecceEEEEeccC
Confidence 1 11222233445556666666555443333333322 111121111 0111111 1236778999999977
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhcccC
Q 018191 277 GQTAASIISEICGFVVVLSGTILLHTTK 304 (359)
Q Consensus 277 ~~~~~~~~~~~~G~~~~~~Gv~lLs~~~ 304 (359)
+..++.....|.++++.|.++|.--|
T Consensus 262 --tkkEm~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 262 --TKKEMVYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred --chhhhhhhhhhHHHHHHHhhhhheec
Confidence 47799999999999999999887543
No 77
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=81.61 E-value=52 Score=31.67 Aligned_cols=210 Identities=16% Similarity=0.186 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhchhhhhhchhhHH----HHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCC-
Q 018191 55 LWWVGMAIMIVGEVANFVAYAFAPAVLVTPLGALS----IIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQ- 129 (359)
Q Consensus 55 ~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl~a~~----li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~- 129 (359)
...+--+.|.++.+.+=-|+.+.|- |-..++ -+=..+++..+.|.+-++++...+.+|++|++++..--++
T Consensus 87 ~YaAcs~sYLlAMVssN~Alq~vpY----PTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv 162 (337)
T KOG1580|consen 87 MYAACSASYLLAMVSSNQALQYVPY----PTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKV 162 (337)
T ss_pred HHHHHHHHHHHHHHhccchhcccCC----cHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccccc
Confidence 3344445555666665566766663 322222 2334567778889999999999999999999998775322
Q ss_pred ---CCCCCCHHHHHHHhcChhHHHHHHHHH-HHHHHHHH--hhcccCCCchhHHHHHH-HHhhhhHHHHHHHHHHHHHHH
Q 018191 130 ---ESPITSVQEIWSLATQPAFLLYVASVI-VLVFILIF--HFAPRCGNTNALVFIGI-CSLMGSLSVMSVKALGTSLKL 202 (359)
Q Consensus 130 ---~~~~~s~~el~~~~~~~~fl~y~~~~~-~~~~~li~--~~~~r~g~~~~~~y~~i-~gl~g~~tvl~~K~v~~~l~~ 202 (359)
|+++.-..|+.-.+ .+.. ......-- +.+.+++..+++.|.-. +.+.=|...+.+--+=+.+.
T Consensus 163 ~g~e~~t~g~GElLL~l---------SL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~y- 232 (337)
T KOG1580|consen 163 GGAEDKTFGFGELLLIL---------SLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFY- 232 (337)
T ss_pred CCCcccccchHHHHHHH---------HHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHH-
Confidence 22333333432110 0000 00000000 11223344556655433 33322222222111111110
Q ss_pred hhcCCccccchHHHHHHHHH-HHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHH
Q 018191 203 TFEGKNQLLYPDTWFFMLVV-AICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAA 281 (359)
Q Consensus 203 ~~~g~~~~~~~~ty~~l~~~-v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~ 281 (359)
+ .-+||..|.=+... +.+++.| +|.=+ -...|.+.. ..+....=-+++|++++++|+... ++.
T Consensus 233 -F----~~RhP~~~~~l~l~ai~s~LGQ-~fIF~-------tv~~FgPLt-CSivTTTRKfFTil~SVllf~npl--s~r 296 (337)
T KOG1580|consen 233 -F----VQRHPYVFWDLTLLAIASCLGQ-WFIFK-------TVEEFGPLT-CSIVTTTRKFFTILISVLLFNNPL--SGR 296 (337)
T ss_pred -H----HHhccHHHHHHHHHHHHHHhhh-HHHHH-------HHHHhCCee-EEEEeehHHHHHHHHHHHHhcCcC--cHH
Confidence 0 12467665544444 4445554 55556 566666544 333344456778999999999854 566
Q ss_pred HHHHHHHHHHHHHHhhh
Q 018191 282 SIISEICGFVVVLSGTI 298 (359)
Q Consensus 282 ~~~~~~~G~~~~~~Gv~ 298 (359)
||. |.++++.+..
T Consensus 297 Qwl----gtvlVF~aL~ 309 (337)
T KOG1580|consen 297 QWL----GTVLVFSALT 309 (337)
T ss_pred HHH----HHHHHHHHhh
Confidence 664 4455554443
No 78
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=81.54 E-value=3.7 Score=40.82 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=43.2
Q ss_pred HHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhhee
Q 018191 72 VAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIII 123 (359)
Q Consensus 72 ~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~li 123 (359)
..+...+..-..=.+.+--++..+++.++++|+++..+++|+++++.|+.+.
T Consensus 295 ~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 295 YCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY 346 (350)
T ss_pred HHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence 4555566666666667777899999999999999999999999999999754
No 79
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=80.48 E-value=2.3 Score=35.40 Aligned_cols=45 Identities=22% Similarity=0.475 Sum_probs=38.1
Q ss_pred hchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecC
Q 018191 83 TPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAP 128 (359)
Q Consensus 83 ~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~ 128 (359)
+--|.+=++.+.+-...+-|+|.++.|++|..+|.+|+.++. ++|
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~-~~P 105 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL-FAP 105 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE-ecC
Confidence 445677788888899999999999999999999999998774 444
No 80
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=76.82 E-value=21 Score=33.81 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=73.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhc-------------------CcccCC--ccccccc--chhHHHHHH
Q 018191 5 KDNLKGFVLALLSSFFIGSSFIIKKKGLRRAAAAS-------------------GVRAGV--GGFTYLL--EPLWWVGMA 61 (359)
Q Consensus 5 ~~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~-------------------~~~~g~--~~~~~l~--~p~W~~G~~ 61 (359)
.+..+|+++.++++++-+.+-+...|-+++.+.+. -.+++. .....+. +++-|.=++
T Consensus 110 ~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~ 189 (244)
T PF04142_consen 110 QNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIF 189 (244)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHH
Confidence 34678999999999999999988877666532111 000000 0011222 222233334
Q ss_pred HHHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHH
Q 018191 62 IMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVM 115 (359)
Q Consensus 62 l~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~l 115 (359)
+.++|-+.-...+.++.-.+=.=-.+++++.+++++..+.+.+++..-.+|+.+
T Consensus 190 ~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 190 LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 445566666666778887777777889999999999999999999987777764
No 81
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=76.53 E-value=15 Score=35.51 Aligned_cols=115 Identities=19% Similarity=0.269 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCcc---------------------cCC--ccc-ccccchhHHHHHHHH
Q 018191 8 LKGFVLALLSSFFIGSSFIIKKKGLRRAAAASGVR---------------------AGV--GGF-TYLLEPLWWVGMAIM 63 (359)
Q Consensus 8 ~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~---------------------~g~--~~~-~~l~~p~W~~G~~l~ 63 (359)
..|+++.+++-++.+.-.+.|+|-.++.+.++ .+ .+. +.. -....|..+.-+++.
T Consensus 153 ~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~-~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~ 231 (303)
T PF08449_consen 153 ALGIILLLLSLLLDAFTGVYQEKLFKKYGKSP-WELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLF 231 (303)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHH
Confidence 34999999999999999999999766543321 00 000 000 111234433333333
Q ss_pred -HHHHHHHHHH---HhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhhee
Q 018191 64 -IVGEVANFVA---YAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIII 123 (359)
Q Consensus 64 -~~g~~~~~~A---l~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~li 123 (359)
..+.+++..- ...-......=...+--+++.+++.++.+++++...|.|.+++..|..+-
T Consensus 232 s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~ 295 (303)
T PF08449_consen 232 SLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY 295 (303)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence 2333333222 22223333445556667888999999999999999999999999998753
No 82
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=73.66 E-value=1.4 Score=42.53 Aligned_cols=63 Identities=24% Similarity=0.441 Sum_probs=53.7
Q ss_pred HHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCCCCC
Q 018191 71 FVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQESPI 133 (359)
Q Consensus 71 ~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~~~~ 133 (359)
.-|+.+-...-++-|-+-+++.-.+++.++||.|-+..++.|++.|++|+++++...-+.++.
T Consensus 96 V~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~ 158 (336)
T KOG2766|consen 96 VKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDR 158 (336)
T ss_pred eeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccc
Confidence 456777777888888999999999999999999999999999999999999988765555443
No 83
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=72.30 E-value=99 Score=30.05 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=36.5
Q ss_pred hhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhc
Q 018191 243 ALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLH 301 (359)
Q Consensus 243 AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs 301 (359)
||++-++.. .-+.-+.++.++.+.|.++++|.. ++.||....+ ++....|+.+=.
T Consensus 230 AL~rlp~~~-F~~LlSLePa~aAl~G~i~L~e~l--s~~qwlaI~~-ViaAsaG~~lt~ 284 (292)
T COG5006 230 ALRRLPART-FGTLLSLEPALAALSGLIFLGETL--TLIQWLAIAA-VIAASAGSTLTA 284 (292)
T ss_pred HHhhCChhH-HHHHHHhhHHHHHHHHHHHhcCCC--CHHHHHHHHH-HHHHHhcccccc
Confidence 777766554 455668888999999999999965 5667665443 233444554433
No 84
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=72.03 E-value=41 Score=30.66 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=37.7
Q ss_pred HHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhh
Q 018191 229 QMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTI 298 (359)
Q Consensus 229 Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~ 298 (359)
|..+.+. .++++|++ ..-+....-.+.+.+.+..+|+|.. ++. ...|..+++.|++
T Consensus 165 ~~~~v~~-------vlk~~~~~-~~~~~~~~~~~~s~lls~~~f~~~l--s~~----~~~g~~lV~~~~~ 220 (222)
T TIGR00803 165 GGLCIGG-------VVRYADNT-TKSFVTALSIILSTLASVRLFDAKI--SST----FYLGAILVFLATF 220 (222)
T ss_pred cCceeee-------hhHHhHHH-HHHHHHHHHHHHHHHHHHHHhcCCc--cHH----HHHHHHHHHeeeE
Confidence 4445666 88888877 4556667777888889999999753 333 3455556666554
No 85
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=70.44 E-value=4.7 Score=34.46 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=32.1
Q ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 018191 266 LASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTTKDFE 307 (359)
Q Consensus 266 ~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~~~~~ 307 (359)
+.-+.+|=-..+-++|++.++++.+++++.|+++|.++-...
T Consensus 20 LEemlW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~AN 61 (125)
T PF15048_consen 20 LEEMLWFFRVEDATPWNYSILALSFVVLVISFFLLGRSIQAN 61 (125)
T ss_pred HHHHHHheecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 344554444455678999999999999999999999885443
No 86
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=70.01 E-value=17 Score=34.89 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHH-----HhcccCCCCHHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 018191 257 YVMFTSLTILASVI-----MFKDWDGQTAASIISEICGFVVVLSGTILLHTTKDFE 307 (359)
Q Consensus 257 ~v~~t~~~i~~G~i-----~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~~~~~ 307 (359)
+-.|...+++.|.. +|++..+ .+..-.+=.+|.+++++|..+.+.-|.++
T Consensus 85 ~liW~s~n~l~Gw~~grfGlFg~~~~-~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 85 MLIWGSVNCLTGWASGRFGLFGLDPQ-VPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHHHHHhhceecccccc-ccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 44677778888876 5665444 45566667778888888888777766655
No 87
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=68.09 E-value=57 Score=33.50 Aligned_cols=73 Identities=16% Similarity=0.295 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecC---C----------CCCCCCHHHHHHHhcChhHHHH
Q 018191 85 LGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAP---Q----------ESPITSVQEIWSLATQPAFLLY 151 (359)
Q Consensus 85 l~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~---~----------~~~~~s~~el~~~~~~~~fl~y 151 (359)
-|+++....+.++=++.....+..-|++....++=..++....| + +.+..+..|++++++.+.|+.+
T Consensus 146 wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~ 225 (412)
T PF01306_consen 146 WGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFF 225 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHH
T ss_pred HhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHH
Confidence 36777777777777766654444446554332211111111111 0 1123456688999999999876
Q ss_pred HHHHHH
Q 018191 152 VASVIV 157 (359)
Q Consensus 152 ~~~~~~ 157 (359)
.+.+..
T Consensus 226 ~l~v~g 231 (412)
T PF01306_consen 226 VLFVIG 231 (412)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 88
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.26 E-value=8.4 Score=31.81 Aligned_cols=107 Identities=14% Similarity=0.176 Sum_probs=61.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccccccchhHHHHHHHHHHHHHHH---HHHHhhchh
Q 018191 3 FSKDNLKGFVLALLSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFTYLLEPLWWVGMAIMIVGEVAN---FVAYAFAPA 79 (359)
Q Consensus 3 ~~~~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~~g~~~~~~l~~p~W~~G~~l~~~g~~~~---~~Al~~ap~ 79 (359)
-|+.++..++|-++|+++...+- +||.+...++ . -..---.|-+.++=|.+..-.| -..|+-+-+
T Consensus 4 ~~~~~l~~vlLL~~SNvFMTFAW----YghLk~~~~p-l-------~~~i~~SWGIA~fEY~LqvPaNRiG~~v~s~~QL 71 (116)
T COG3169 4 PMSVYLYPVLLLIGSNVFMTFAW----YGHLKFTNKP-L-------VIVILASWGIAFFEYLLQVPANRIGHQVYSAAQL 71 (116)
T ss_pred CCchHHHHHHHHHhhHHHHHHHH----HHHHhccCCc-h-------hHHHHHHhhHHHHHHHHhCccchhhhhhccHHHH
Confidence 36677788889899999876653 5554433210 0 0001122333333333211111 122333333
Q ss_pred hhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhhee
Q 018191 80 VLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIII 123 (359)
Q Consensus 80 slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~li 123 (359)
-..|- .+++.+-++++.++|||+++...+.|..++..|+.++
T Consensus 72 K~mQE--VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 72 KTMQE--VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHH--HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 33433 4566677889999999999999998888887776643
No 89
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=60.57 E-value=7.7 Score=32.35 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhhe
Q 018191 87 ALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSII 122 (359)
Q Consensus 87 a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~l 122 (359)
++++..-.+++.+++||+++.....|-++++.++..
T Consensus 70 vitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 70 VITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 344555578899999999999999988888766554
No 90
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=60.18 E-value=22 Score=36.13 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCccc--C---------------------Ccccccccch----hHHH
Q 018191 6 DNLKGFVLALLSSFFIGSSFIIKKKGLRRAAAASGVRA--G---------------------VGGFTYLLEP----LWWV 58 (359)
Q Consensus 6 ~~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~~--g---------------------~~~~~~l~~p----~W~~ 58 (359)
...+|-++|+.||+++|+=.++-||-.-+++++-+... | .+...+..++ .-..
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 34799999999999999999998886544421111000 0 0000111111 1135
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecC
Q 018191 59 GMAIMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAP 128 (359)
Q Consensus 59 G~~l~~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~ 128 (359)
|++-.++...+|..|...-...+++--.++++..+.+.=..+-+.+.+...++|.+.+.+|-+++-....
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 6666667777888887766666666666777777777666666889999999999999999887765443
No 91
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=59.81 E-value=1.9e+02 Score=30.15 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccCCCCC
Q 018191 280 AASIISEICGFVVVLSGTILLHTTKDFER 308 (359)
Q Consensus 280 ~~~~~~~~~G~~~~~~Gv~lLs~~~~~~~ 308 (359)
.|+...+.-|++.++.|++++-+-||.|+
T Consensus 183 ~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 183 GWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 56778888899999999999988888776
No 92
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=58.85 E-value=30 Score=29.85 Aligned_cols=66 Identities=26% Similarity=0.327 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhh-chhhHHHHHHHHHHHH----HhcCCCCccchhhHHHHhhhhhe
Q 018191 57 WVGMAIMIVGEVANFVAYAFAPAVLVT-PLGALSIIVSAVLAHF----ILHEKLPQLGILGCVMCIAGSII 122 (359)
Q Consensus 57 ~~G~~l~~~g~~~~~~Al~~ap~slv~-Pl~a~~li~~~ila~~----~L~e~l~~~~~~G~~li~~G~~l 122 (359)
|.|=++-+.--..+.........+... =...-+++.+.++=++ .-|++++.++.+|.+++++|+.+
T Consensus 68 ~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 68 YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 444444443334444444433333332 2333445556666665 46799999999999999999864
No 93
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=57.35 E-value=43 Score=32.74 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=40.4
Q ss_pred hhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 018191 243 ALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTTKDFE 307 (359)
Q Consensus 243 AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~~~~~ 307 (359)
|+...+++++.|+--. -.+++.+.+-.+++|..+.. ...|+++++.|+.++....+++
T Consensus 70 Al~~ap~slv~Plg~~-~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~~~~~ 127 (300)
T PF05653_consen 70 ALGFAPASLVAPLGAL-SLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIFAPKE 127 (300)
T ss_pred HHHhhhHHHHHHHHhh-hhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEeCCCC
Confidence 7777899999998644 44567777778889965532 3577778888887665544433
No 94
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=56.32 E-value=19 Score=28.16 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=41.5
Q ss_pred CceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhh
Q 018191 248 NTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTI 298 (359)
Q Consensus 248 ~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~ 298 (359)
....++|+.|++-.++.++.+..-+.+....+|.-+...+.++...+.|.+
T Consensus 12 r~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~V 62 (76)
T PF11970_consen 12 RSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFV 62 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHH
Confidence 346789999999999999999999986666667677777888888887765
No 95
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=52.91 E-value=1.1e+02 Score=28.43 Aligned_cols=57 Identities=28% Similarity=0.356 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHHHHHHHHH---HHhhchhhh--hhchhhHHHHHHHHHH-HHHhcCCCCcc
Q 018191 52 LEPLWWVGMAIMIVGEVANFV---AYAFAPAVL--VTPLGALSIIVSAVLA-HFILHEKLPQL 108 (359)
Q Consensus 52 ~~p~W~~G~~l~~~g~~~~~~---Al~~ap~sl--v~Pl~a~~li~~~ila-~~~L~e~l~~~ 108 (359)
+||.||=+++......+.|+. +-+|.|.++ ..|-.++.++-.+++| ++++|+|.+..
T Consensus 157 qr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfylkkk~NIq 219 (226)
T COG4858 157 QRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILALRFYLKKKKNIQ 219 (226)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHHHHHHHHhhccc
Confidence 478899999888888877754 446777765 4455566666666666 56678887754
No 96
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=51.49 E-value=2.1e+02 Score=26.79 Aligned_cols=20 Identities=15% Similarity=-0.137 Sum_probs=12.5
Q ss_pred HhhcccCCCchhHHHHHHHH
Q 018191 164 FHFAPRCGNTNALVFIGICS 183 (359)
Q Consensus 164 ~~~~~r~g~~~~~~y~~i~g 183 (359)
-+...|+|+|+.+..+.+..
T Consensus 51 g~l~dr~g~r~~~~~~~~~~ 70 (379)
T TIGR00881 51 GSVSDRSNPRVFLPIGLILC 70 (379)
T ss_pred hHHHHhhCCeehhHHHHHHH
Confidence 34567788887666554433
No 97
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=48.68 E-value=50 Score=32.38 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=37.4
Q ss_pred hhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhcccC
Q 018191 243 ALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTTK 304 (359)
Q Consensus 243 AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~~ 304 (359)
-|...|++++.= .-++++++-+.++++|. ++.+ ..+|..+.+.||+++.|.+
T Consensus 120 ~mslaDA~vItF----ssPvft~ifaw~~LkE~--~t~~----eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 120 YMSLADAVVITF----SSPVFTIIFAWAFLKEP--FTKF----EALGSLITLLGVVLIVRPP 171 (346)
T ss_pred hcchhheEEEEe----cChHHHHHHHHHHHcCC--CcHH----HHHHHHHhhheEEEEecCC
Confidence 555678876531 12345788889999994 4554 5678889999999999765
No 98
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=45.82 E-value=1.2e+02 Score=29.81 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=43.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Q 018191 210 LLYPDTWFFMLVVAICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICG 289 (359)
Q Consensus 210 ~~~~~ty~~l~~~v~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G 289 (359)
.++|.+++.+.....-...|-.-+=- |..+..+.... .=|-.-++++++.|.++|+|.. ++.|++...++
T Consensus 66 ~~~p~~~~~~~l~a~li~~nW~lfiW-------Avn~g~~leaS-LGY~InPL~~VllG~lflkErl--s~~Q~iAV~lA 135 (293)
T COG2962 66 LKQPKTLLMLALTALLIGLNWWLFIW-------AVNNGHVLEAS-LGYFINPLVNVLLGRLFLKERL--SRLQWIAVGLA 135 (293)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHhhe-------ecCCCchhHHH-hHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHH
Confidence 56777777776666655566544433 44333322211 2233566779999999999954 57777655544
Q ss_pred H
Q 018191 290 F 290 (359)
Q Consensus 290 ~ 290 (359)
.
T Consensus 136 ~ 136 (293)
T COG2962 136 A 136 (293)
T ss_pred H
Confidence 3
No 99
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=42.82 E-value=1.4e+02 Score=27.34 Aligned_cols=56 Identities=29% Similarity=0.486 Sum_probs=32.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHH---hhchhhh---hhchhhHHHHHHHHHHHHHhcCCCCcc
Q 018191 53 EPLWWVGMAIMIVGEVANFVAY---AFAPAVL---VTPLGALSIIVSAVLAHFILHEKLPQL 108 (359)
Q Consensus 53 ~p~W~~G~~l~~~g~~~~~~Al---~~ap~sl---v~Pl~a~~li~~~ila~~~L~e~l~~~ 108 (359)
++.||-.++..++..+.+++.+ ++.|..+ +.|...+-+-..+...++++|.|.+..
T Consensus 143 r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 143 RPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKYNIT 204 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4666666666665555554333 3455443 334444444445667788888887654
No 100
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=42.79 E-value=1.9e+02 Score=28.72 Aligned_cols=67 Identities=10% Similarity=0.155 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecCCC
Q 018191 64 IVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAPQE 130 (359)
Q Consensus 64 ~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~~~ 130 (359)
.++.-++..||.+..--...=-=+.=++-..+...++-|+|.+..|.+-..++..|+.++..+.+.+
T Consensus 94 ~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 94 TLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred hcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 4666788888887664433333344566777888899999999999999999999999998885544
No 101
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.01 E-value=5.8 Score=38.69 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhh
Q 018191 64 IVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSI 121 (359)
Q Consensus 64 ~~g~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~ 121 (359)
+++-..|-..|++.|.+.-+-==++..+||.+++..+||+|-+..-..+|.+|+.|-.
T Consensus 113 i~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~ 170 (347)
T KOG1442|consen 113 ILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFG 170 (347)
T ss_pred eeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhe
Confidence 3344466667788887777777789999999999999999999999999999888865
No 102
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=39.97 E-value=4e+02 Score=26.69 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=50.7
Q ss_pred HHHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeee
Q 018191 67 EVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIH 126 (359)
Q Consensus 67 ~~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~ 126 (359)
-.++=.++.+.|+++-+-.=+.+++|-.+++..+==||.+..-.+=+.+|.+|+.+.+.-
T Consensus 98 IGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~K 157 (349)
T KOG1443|consen 98 IGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYK 157 (349)
T ss_pred cccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEec
Confidence 346677899999999999999999999999999988888887777777788888777663
No 103
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=39.97 E-value=5.1e+02 Score=28.09 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 018191 56 WWVGMAIMIVGEV 68 (359)
Q Consensus 56 W~~G~~l~~~g~~ 68 (359)
...|.++.++|.+
T Consensus 111 ~i~g~~l~vvG~I 123 (599)
T PF06609_consen 111 FIIGSLLGVVGSI 123 (599)
T ss_pred HHHHHHHHHhHHH
Confidence 3444444445544
No 104
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=34.77 E-value=2.5e+02 Score=26.27 Aligned_cols=59 Identities=20% Similarity=0.362 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccc------cccchhHHHHHHHHHHHH
Q 018191 8 LKGFVLALLSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFT------YLLEPLWWVGMAIMIVGE 67 (359)
Q Consensus 8 ~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~~g~~~~~------~l~~p~W~~G~~l~~~g~ 67 (359)
.+|+.+.+++-++..+++ .||+..++.+++.+.--..+.++ |+-+-.+|.|+.+.+.+.
T Consensus 122 ~~g~~l~~~g~~~E~~AD-~Q~~~fk~~~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~ 186 (235)
T PF06966_consen 122 ILGIALFLIGFLLETVAD-QQKYRFKKDPANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISS 186 (235)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhCcccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhh
Confidence 578888888888888888 56666666554321101123444 444566788888877655
No 105
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=33.54 E-value=6.8e+02 Score=29.21 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=18.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 018191 52 LEPLWWVGMAIMIVGEVANFVAYA 75 (359)
Q Consensus 52 ~~p~W~~G~~l~~~g~~~~~~Al~ 75 (359)
++-.||+-+++.+++.+++++-..
T Consensus 74 ~r~Aw~~~~~~~~~~~~~~l~~~l 97 (1094)
T PRK02983 74 KRAAWWVLLAYLVLAALLNVALLA 97 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457799999988888887776544
No 106
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=30.33 E-value=5.3e+02 Score=25.21 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccccccchhHHHHHHHHHHHHHHHH
Q 018191 7 NLKGFVLALLSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFTYLLEPLWWVGMAIMIVGEVANF 71 (359)
Q Consensus 7 ~~iGv~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~~g~~~~~~l~~p~W~~G~~l~~~g~~~~~ 71 (359)
....+...+++.+..-+++...|+|.++.... +.+-+ ....-.-+-..|.++.++|.+..+
T Consensus 45 ~~~~i~~~ii~lvl~iia~~~lr~GF~~L~~~-~~~~~---iG~tG~~Lilig~il~iig~i~~i 105 (285)
T PF06157_consen 45 LIVAIISLIIGLVLGIIAFYRLRRGFRILSSY-DRDVG---IGKTGATLILIGYILIIIGAILAI 105 (285)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCcc---chhhhhHHHHHHHHHHHHHHHHHH
Confidence 33455666666777777888888888776543 22211 122222334555555555555433
No 107
>TIGR00893 2A0114 d-galactonate transporter.
Probab=29.95 E-value=4.6e+02 Score=24.40 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=10.4
Q ss_pred HhhcccCCCchhHHHHH
Q 018191 164 FHFAPRCGNTNALVFIG 180 (359)
Q Consensus 164 ~~~~~r~g~~~~~~y~~ 180 (359)
-+...|.|+|+.+..+.
T Consensus 50 g~l~d~~g~r~~~~~~~ 66 (399)
T TIGR00893 50 GWLLDRFGARKTLAVFI 66 (399)
T ss_pred HHHHHhcCcceeeHHHH
Confidence 34566788777665443
No 108
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=28.46 E-value=32 Score=34.11 Aligned_cols=30 Identities=33% Similarity=0.380 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018191 5 KDNLKGFVLALLSSFFIGSSFIIKKKGLRR 34 (359)
Q Consensus 5 ~~~~iGv~LAl~ss~~~a~G~vlqk~~~~~ 34 (359)
+-+++|++.|..+.+..+.=.+++|+...+
T Consensus 159 ~fn~~G~i~a~~s~~~~al~~I~~~~ll~~ 188 (316)
T KOG1441|consen 159 SFNLFGFISAMISNLAFALRNILSKKLLTS 188 (316)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 356799999999999999999999998754
No 109
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.87 E-value=3.2e+02 Score=21.57 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=15.7
Q ss_pred cccchhHHHHHHHHHHHHHHHH
Q 018191 50 YLLEPLWWVGMAIMIVGEVANF 71 (359)
Q Consensus 50 ~l~~p~W~~G~~l~~~g~~~~~ 71 (359)
-++||.||++++..++-.+.++
T Consensus 7 R~kN~~~w~ali~~i~l~vq~~ 28 (84)
T PF04531_consen 7 RFKNKAFWVALISAILLLVQQV 28 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHH
Confidence 3689999999887665444444
No 110
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=26.42 E-value=56 Score=31.45 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecC
Q 018191 90 IIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAP 128 (359)
Q Consensus 90 li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~ 128 (359)
=.|+.+.+.++.+.+++.++|+|++++..+...=+..+.
T Consensus 278 KfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 278 KFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 368889999999999999999999999999988777764
No 111
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=25.82 E-value=4.8e+02 Score=24.64 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhchh---------hhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHh
Q 018191 65 VGEVANFVAYAFAPA---------VLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCI 117 (359)
Q Consensus 65 ~g~~~~~~Al~~ap~---------slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~ 117 (359)
-|...++.|+.+=.+ ++..=+.=.+...+++++.+-++||.+++..+-.++..
T Consensus 102 wgig~sf~AlltPDl~~~~~p~l~~~lffitH~svfls~v~~~vhfreRpgksgl~~svl~~ 163 (236)
T COG5522 102 WGIGISFMALLTPDLQYLQVPWLEFLLFFITHISVFLSAVILIVHFRERPGKSGLVMSVLVA 163 (236)
T ss_pred hhhhHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHH
Confidence 344446666655444 22333455677888999999999999999976555443
No 112
>PRK09917 hypothetical protein; Provisional
Probab=25.73 E-value=4.7e+02 Score=23.12 Aligned_cols=40 Identities=5% Similarity=-0.042 Sum_probs=24.3
Q ss_pred hchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhhe
Q 018191 83 TPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSII 122 (359)
Q Consensus 83 ~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~l 122 (359)
.=++++.+-+-.....+..|.+.+..-+-|++-.+=|...
T Consensus 63 sfiaa~~igl~s~~~Ar~~k~P~tvf~ip~iiPLVPG~~~ 102 (157)
T PRK09917 63 TFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISA 102 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEeeHhhHHhcCCCHHH
Confidence 3334444433333333558888888888888877766653
No 113
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=23.70 E-value=4.6e+02 Score=26.52 Aligned_cols=32 Identities=16% Similarity=-0.084 Sum_probs=25.6
Q ss_pred hhhccCceeecchhHHHHHHHHHHHHHHHhcc
Q 018191 243 ALDTFNTAVVSPIYYVMFTSLTILASVIMFKD 274 (359)
Q Consensus 243 AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E 274 (359)
=++.-|+.-+.|+--+.=....+..|..--+|
T Consensus 298 ~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~ 329 (399)
T PF00909_consen 298 RLKIDDPVGAFAVHGVGGIWGTILTGLFASPE 329 (399)
T ss_dssp HHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCH
T ss_pred eeEeccccceEeeeeccHHHHHHHHHHHhccc
Confidence 78888999999999888888888887766666
No 114
>PF13347 MFS_2: MFS/sugar transport protein
Probab=22.17 E-value=4.6e+02 Score=25.95 Aligned_cols=26 Identities=12% Similarity=0.039 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccCC
Q 018191 280 AASIISEICGFVVVLSGTILLHTTKD 305 (359)
Q Consensus 280 ~~~~~~~~~G~~~~~~Gv~lLs~~~~ 305 (359)
.+.+...+.+.+..++-.+.....||
T Consensus 175 ~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 175 GYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheeee
Confidence 45666666665555554444444455
No 115
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=22.05 E-value=3.8e+02 Score=22.37 Aligned_cols=47 Identities=23% Similarity=0.315 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHhhhhhcccCCCCC
Q 018191 262 SLTILASVIMFKD-WDGQTAASIISEICGFVVVLSGTILLHTTKDFER 308 (359)
Q Consensus 262 ~~~i~~G~i~f~E-~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~~~~~~ 308 (359)
+..++.|...+-+ +.+.+.....-.++|..++..-=..++|+++.+.
T Consensus 44 lliiisG~~L~~~~~~~~~~l~~iK~l~gl~vI~lmEm~l~rkkk~k~ 91 (110)
T PF07457_consen 44 LLIIISGVWLFIRTFAGNPMLYIIKMLLGLIVIGLMEMALARKKKGKP 91 (110)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3466666666665 7777778888899998887777778887776543
No 116
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=21.92 E-value=3e+02 Score=23.64 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=26.1
Q ss_pred CCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHh-hcc-cCCCchhHHHHHHHHhhhhHHHHHHH
Q 018191 133 ITSVQEIWSLATQPAFLLYVASVIVLVFILIFH-FAP-RCGNTNALVFIGICSLMGSLSVMSVK 194 (359)
Q Consensus 133 ~~s~~el~~~~~~~~fl~y~~~~~~~~~~li~~-~~~-r~g~~~~~~y~~i~gl~g~~tvl~~K 194 (359)
..|.++-++-.++-...+.=+++.++.++...| ... ..+ ..-..+-.++|+++|+-++.+-
T Consensus 65 ~~t~~~~~k~~~~qls~v~Nilvsv~~~~~~~~~~~~~~~~-~~~~~~Rvllgl~~al~vlvAE 127 (142)
T PF11712_consen 65 EDTPAQELKSVKRQLSTVFNILVSVFAVFFAGWYWAGYSFG-GWSFPYRVLLGLFGALLVLVAE 127 (142)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHH
Confidence 345665555555443333333333333233233 222 111 1123445566666666655443
No 117
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=21.31 E-value=8.7e+02 Score=24.63 Aligned_cols=50 Identities=6% Similarity=-0.005 Sum_probs=26.8
Q ss_pred ecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhccc
Q 018191 252 VSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTT 303 (359)
Q Consensus 252 v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~ 303 (359)
+.-+....-.+.+++.+.++ + ......++.....+|.+.++++++.+-..
T Consensus 384 ~~g~~~~~g~lg~~i~~~l~-~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 384 ISGLTGAGGNVGAVLTQLLF-F-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhhhhccccHHHHHHHHHH-H-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 34444555566777777654 3 21222355566666766666666554444
No 118
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=20.48 E-value=1.6e+02 Score=18.77 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 018191 5 KDNLKGFVLALLSSFFIGSSF 25 (359)
Q Consensus 5 ~~~~iGv~LAl~ss~~~a~G~ 25 (359)
-.|++|+.+|..-+++++...
T Consensus 4 faWilG~~lA~~~~i~~a~wl 24 (28)
T PF08173_consen 4 FAWILGVLLACAFGILNAMWL 24 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999998887653
No 119
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=20.14 E-value=8.3e+02 Score=23.95 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=45.5
Q ss_pred chhHHHHHHHHHHHH-HHHHHHHhhchhhhhhchhhHHHHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeecC
Q 018191 53 EPLWWVGMAIMIVGE-VANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHAP 128 (359)
Q Consensus 53 ~p~W~~G~~l~~~g~-~~~~~Al~~ap~slv~Pl~a~~li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a~ 128 (359)
+..--.|++++.... +.++..++..+..+..-.....+.+...+++.++|-.-+..-.+|+-..++|...+...+|
T Consensus 59 k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~ 135 (305)
T PF03601_consen 59 KKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAP 135 (305)
T ss_pred HHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcc
Confidence 344457778776654 4666666665555554455555555666665555555444445677777777776655554
Done!