Query 018191
Match_columns 359
No_of_seqs 181 out of 657
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 11:21:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.9 6.3E-09 2.2E-13 85.6 10.8 101 11-127 4-105 (110)
2 2i68_A Protein EMRE; transmemb 98.8 7.4E-09 2.5E-13 88.7 6.9 100 12-127 5-105 (137)
3 2i68_A Protein EMRE; transmemb 97.0 0.0014 4.7E-08 55.8 6.6 68 224-304 38-105 (137)
4 3b5d_A Multidrug transporter E 96.9 0.006 2.1E-07 49.6 10.1 67 225-304 39-105 (110)
5 3o7q_A L-fucose-proton symport 26.4 3.7E+02 0.013 24.4 10.5 20 165-184 83-102 (438)
6 3o7q_A L-fucose-proton symport 24.9 3.3E+02 0.011 24.8 9.4 31 48-78 252-282 (438)
7 2zxe_G FXYD10, phospholemman-l 10.9 1.5E+02 0.005 22.1 2.4 26 280-305 18-43 (74)
8 2jp3_A FXYD domain-containing 9.7 1.4E+02 0.0046 21.9 1.8 26 279-304 15-40 (67)
9 2jo1_A Phospholemman; FXYD1, N 8.6 1.5E+02 0.0051 21.9 1.6 26 279-304 14-39 (72)
10 3b9w_A Ammonium transporter fa 8.1 1.3E+03 0.046 22.2 9.5 27 243-269 287-313 (407)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.93 E-value=6.3e-09 Score=85.61 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhchhhhhhch-hhHH
Q 018191 11 FVLALLSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFTYLLEPLWWVGMAIMIVGEVANFVAYAFAPAVLVTPL-GALS 89 (359)
Q Consensus 11 v~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~~g~~~~~~l~~p~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl-~a~~ 89 (359)
-++-+++.++.+.|+.+.|++. + ..+.+.++.+.+++++++.+...++...|++.+.|+ .+++
T Consensus 4 ~l~l~~a~~~e~~~~~~lK~s~-------~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~ 67 (110)
T 3b5d_A 4 YIYLGGAILAEVIGTTLMKFSE-------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVG 67 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-------C---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHH
Confidence 3455678888999999999861 1 113456678888999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeec
Q 018191 90 IIVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHA 127 (359)
Q Consensus 90 li~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a 127 (359)
.+++.+++.+++||+++..+++|+.++++|++++...+
T Consensus 68 ~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 68 IVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999875543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.79 E-value=7.4e-09 Score=88.66 Aligned_cols=100 Identities=12% Similarity=0.054 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhchhhhhhch-hhHHH
Q 018191 12 VLALLSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFTYLLEPLWWVGMAIMIVGEVANFVAYAFAPAVLVTPL-GALSI 90 (359)
Q Consensus 12 ~LAl~ss~~~a~G~vlqk~~~~~~~~~~~~~~g~~~~~~l~~p~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl-~a~~l 90 (359)
++-+++.++.+.|+.+.|++. . ..+.|.++.|++++++++.++..++...|++.+.|+ .+++.
T Consensus 5 l~Ll~ail~ev~~~~~lK~s~-----g-----------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~p 68 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKFSE-----G-----------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (137)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----c-----------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Confidence 455678888999999999862 0 012355678999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhcCCCCccchhhHHHHhhhhheeeeec
Q 018191 91 IVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHA 127 (359)
Q Consensus 91 i~~~ila~~~L~e~l~~~~~~G~~li~~G~~liv~~a 127 (359)
+++.+++.+++||+++..+++|++++++|++++....
T Consensus 69 v~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999886543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.97 E-value=0.0014 Score=55.79 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=46.3
Q ss_pred HHHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhccc
Q 018191 224 ICVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTT 303 (359)
Q Consensus 224 ~~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~ 303 (359)
++...-..++++ |+++.|.+.++|+....-++.+++.|.++|+|.... . ..+|.+++++|++++.+.
T Consensus 38 ~~~~ls~~l~~~-------alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~--~----~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 38 ICYCASFWLLAQ-------TLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL--P----AIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHH-------HHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-------HHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCH--H----HHHHHHHHHHHHHHHhcC
Confidence 333444667788 999999999999977888999999999999996543 2 357888999999999865
Q ss_pred C
Q 018191 304 K 304 (359)
Q Consensus 304 ~ 304 (359)
+
T Consensus 105 ~ 105 (137)
T 2i68_A 105 S 105 (137)
T ss_dssp -
T ss_pred C
Confidence 4
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.94 E-value=0.006 Score=49.55 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=55.0
Q ss_pred HHHHHHHHhccchhhhhhhhhccCceeecchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhhcccC
Q 018191 225 CVIMQMNYLNKESQMMLQALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTTK 304 (359)
Q Consensus 225 ~~l~Q~~~ln~~~~~~~~AL~~~~~~~v~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lLs~~~ 304 (359)
+...-..++++ |+++.|.+.++|+....-++.+.+.|.++|+|.. ++. -.+|.++++.|+++++..+
T Consensus 39 ~~~~~~~~~~~-------al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~--s~~----~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 39 CYCASFWLLAQ-------TLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL--DLP----AIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHH-------HHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHHHHHHHhcCC
Confidence 33344567788 9999999999999888889999999999999965 344 4578889999999998754
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=26.39 E-value=3.7e+02 Score=24.43 Aligned_cols=20 Identities=0% Similarity=-0.160 Sum_probs=11.9
Q ss_pred hhcccCCCchhHHHHHHHHh
Q 018191 165 HFAPRCGNTNALVFIGICSL 184 (359)
Q Consensus 165 ~~~~r~g~~~~~~y~~i~gl 184 (359)
+...|+|+|+.+..+.+...
T Consensus 83 ~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 83 ILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHH
Confidence 45567777776655544433
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=24.88 E-value=3.3e+02 Score=24.82 Aligned_cols=31 Identities=6% Similarity=-0.030 Sum_probs=16.9
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhhch
Q 018191 48 FTYLLEPLWWVGMAIMIVGEVANFVAYAFAP 78 (359)
Q Consensus 48 ~~~l~~p~W~~G~~l~~~g~~~~~~Al~~ap 78 (359)
++.+++|.+|..++........+.....+.|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (438)
T 3o7q_A 252 SRLARIRHWRWAVLAQFCYVGAQTACWSYLI 282 (438)
T ss_dssp HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788877766665544433333333333
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=10.85 E-value=1.5e+02 Score=22.11 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccCC
Q 018191 280 AASIISEICGFVVVLSGTILLHTTKD 305 (359)
Q Consensus 280 ~~~~~~~~~G~~~~~~Gv~lLs~~~~ 305 (359)
..++.+++++.++.+.|+.++-..|=
T Consensus 18 tLRigGLifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 18 RLRVVGLIVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HheeccchhHHHHHHHHHHHHHcCcc
Confidence 46788999999999999998876653
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=9.67 E-value=1.4e+02 Score=21.90 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhcccC
Q 018191 279 TAASIISEICGFVVVLSGTILLHTTK 304 (359)
Q Consensus 279 ~~~~~~~~~~G~~~~~~Gv~lLs~~~ 304 (359)
...++.+++++.++.+.|+.++-..|
T Consensus 15 ~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 15 ESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHheecchhhHHHHHHHHHHHHHcCc
Confidence 35677888888888999988877654
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=8.65 E-value=1.5e+02 Score=21.93 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhcccC
Q 018191 279 TAASIISEICGFVVVLSGTILLHTTK 304 (359)
Q Consensus 279 ~~~~~~~~~~G~~~~~~Gv~lLs~~~ 304 (359)
...++.+++++.++.+.|+.++-..+
T Consensus 14 ~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 14 QSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHcCc
Confidence 45678888889889999998877654
No 10
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=8.13 E-value=1.3e+03 Score=22.17 Aligned_cols=27 Identities=15% Similarity=-0.123 Sum_probs=19.5
Q ss_pred hhhccCceeecchhHHHHHHHHHHHHH
Q 018191 243 ALDTFNTAVVSPIYYVMFTSLTILASV 269 (359)
Q Consensus 243 AL~~~~~~~v~Pv~~v~~t~~~i~~G~ 269 (359)
-++.-|+.-+.|+--+.=...++..|+
T Consensus 287 ~l~iDD~l~a~~vHgv~Gi~G~l~~gl 313 (407)
T 3b9w_A 287 KAKTIDTCGVHNLHGLPGLLGGFSAIL 313 (407)
T ss_dssp HSCCCCTTCHHHHTTHHHHHHHHHHHH
T ss_pred cCCCCCCCCCeecchHHHHHHHHHHHH
Confidence 467778999999877666666666553
Done!