Query 018191
Match_columns 359
No_of_seqs 181 out of 657
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 11:22:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018191.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018191hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 67.8 12 0.00088 32.4 9.6 18 164-181 80-97 (447)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 9.4 1.6E+02 0.012 17.2 3.3 23 212-234 15-37 (37)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 8.7 5.6E+02 0.041 22.1 11.8 28 243-270 303-330 (383)
4 d1r3jc_ f.14.1.1 (C:) Potassiu 6.5 1.4E+02 0.0098 21.0 2.6 40 253-300 43-82 (103)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 5.9 99 0.0072 17.9 1.1 11 52-62 1-11 (34)
6 d1rzhh2 f.23.10.1 (H:11-35) Ph 5.9 1.6E+02 0.012 15.8 1.9 11 212-222 7-17 (26)
7 d1t01a1 a.24.9.1 (A:1-125) Vin 5.0 77 0.0056 23.9 0.3 9 351-359 67-75 (125)
8 d1m56d_ f.23.8.1 (D:) Bacteria 4.6 1.6E+02 0.011 18.0 1.5 18 210-227 19-36 (42)
9 d1qled_ f.23.8.1 (D:) Bacteria 4.3 1.7E+02 0.013 17.9 1.5 18 210-227 20-37 (43)
10 d1ciia1 f.1.1.1 (A:451-624) Co 3.2 1.8E+02 0.013 23.1 1.1 35 66-100 127-162 (174)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=67.76 E-value=12 Score=32.36 Aligned_cols=18 Identities=17% Similarity=-0.188 Sum_probs=10.7
Q ss_pred HhhcccCCCchhHHHHHH
Q 018191 164 FHFAPRCGNTNALVFIGI 181 (359)
Q Consensus 164 ~~~~~r~g~~~~~~y~~i 181 (359)
-+..-|+|+|+.+..+.+
T Consensus 80 G~l~Dr~g~r~~~~~~~~ 97 (447)
T d1pw4a_ 80 GSVSDRSNPRVFLPAGLI 97 (447)
T ss_dssp HHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHH
Confidence 345567777776655443
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.43 E-value=1.6e+02 Score=17.20 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhc
Q 018191 212 YPDTWFFMLVVAICVIMQMNYLN 234 (359)
Q Consensus 212 ~~~ty~~l~~~v~~~l~Q~~~ln 234 (359)
.-..|-++++.+.++++-.||+|
T Consensus 15 tsLy~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC
Confidence 34556677777778888888876
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=8.75 E-value=5.6e+02 Score=22.11 Aligned_cols=28 Identities=14% Similarity=-0.039 Sum_probs=21.8
Q ss_pred hhhccCceeecchhHHHHHHHHHHHHHH
Q 018191 243 ALDTFNTAVVSPIYYVMFTSLTILASVI 270 (359)
Q Consensus 243 AL~~~~~~~v~Pv~~v~~t~~~i~~G~i 270 (359)
-++.-|+.-+.|+--+.=...++..|..
T Consensus 303 ~~~iDD~~~~~~vHg~~Gi~G~l~~glf 330 (383)
T d1u7ga_ 303 LLRVDDPCDVFGVHGVCGIVGCIMTGIF 330 (383)
T ss_dssp HHCSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccceEeehhhhHHHHHHHHHHh
Confidence 5778899999999877777777777754
No 4
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.51 E-value=1.4e+02 Score=20.97 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=19.9
Q ss_pred cchhHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 018191 253 SPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILL 300 (359)
Q Consensus 253 ~Pv~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~~~Gv~lL 300 (359)
..+|+++-|+.+ +=|+|..+.++. .-+++++.++.|+.++
T Consensus 43 ~aly~~~vT~tT-----vGYGDi~P~t~~---gr~~~~~~~~~Gi~~~ 82 (103)
T d1r3jc_ 43 RALWWSVETATT-----VGYGDLYPVTLW---GRCVAVVVMVAGITSF 82 (103)
T ss_dssp HHHHHHHHHHTT-----CCCSSSCCCSHH---HHHHHHHHHHHHHHHH
T ss_pred hhhhhheeeecc-----cccCccccCChh---HHHHHHHHHHHHHHHH
Confidence 345555444444 336787665543 3334444555555443
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.93 E-value=99 Score=17.95 Aligned_cols=11 Identities=36% Similarity=0.658 Sum_probs=7.5
Q ss_pred cchhHHHHHHH
Q 018191 52 LEPLWWVGMAI 62 (359)
Q Consensus 52 ~~p~W~~G~~l 62 (359)
|-|+|++|.+.
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 34888887654
No 6
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.85 E-value=1.6e+02 Score=15.82 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=6.8
Q ss_pred chHHHHHHHHH
Q 018191 212 YPDTWFFMLVV 222 (359)
Q Consensus 212 ~~~ty~~l~~~ 222 (359)
-|.+|.++..+
T Consensus 7 iw~fw~ffall 17 (26)
T d1rzhh2 7 IYSFWIFLAGL 17 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46667666555
No 7
>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.02 E-value=77 Score=23.89 Aligned_cols=9 Identities=11% Similarity=0.416 Sum_probs=5.4
Q ss_pred hhHHhhhcC
Q 018191 351 EDFCRQEMY 359 (359)
Q Consensus 351 ~~~~~~~~~ 359 (359)
++++|||||
T Consensus 67 d~~lk~eM~ 75 (125)
T d1t01a1 67 DQILKRDMP 75 (125)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 355677764
No 8
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.63 E-value=1.6e+02 Score=17.97 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=12.0
Q ss_pred ccchHHHHHHHHHHHHHH
Q 018191 210 LLYPDTWFFMLVVAICVI 227 (359)
Q Consensus 210 ~~~~~ty~~l~~~v~~~l 227 (359)
|..|.+|..+++.++.++
T Consensus 19 Fik~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 19 FVRMVTWAAVVIVAALIF 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667778877766655543
No 9
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=4.28 E-value=1.7e+02 Score=17.88 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=12.2
Q ss_pred ccchHHHHHHHHHHHHHH
Q 018191 210 LLYPDTWFFMLVVAICVI 227 (359)
Q Consensus 210 ~~~~~ty~~l~~~v~~~l 227 (359)
|..|.+|..+++.++.++
T Consensus 20 Fi~~~t~~~i~~i~~lif 37 (43)
T d1qled_ 20 FIKGATWVSILSIAVLVF 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677888877766655543
No 10
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=3.22 E-value=1.8e+02 Score=23.13 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhchhhhhhchhhHHH-HHHHHHHHHH
Q 018191 66 GEVANFVAYAFAPAVLVTPLGALSI-IVSAVLAHFI 100 (359)
Q Consensus 66 g~~~~~~Al~~ap~slv~Pl~a~~l-i~~~ila~~~ 100 (359)
|.....++..+.|..+-.|+|.+++ +...+.+.++
T Consensus 127 g~~asav~a~~fs~~~g~~lgi~g~ali~~~v~a~I 162 (174)
T d1ciia1 127 GNAATALVALVFSILTGSALGIIGYGLLMAVTGALI 162 (174)
T ss_dssp TCBHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3344455566667777789999988 5555555554
Done!