BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018193
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 61.2 bits (147), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCK 349
E C +C+ +E L LPCNH FH+ C+ KWLK N TCP+C+
Sbjct: 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
+C ICLS E+G ++ LPC H FH C+ +WL N CP+C+ +I
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354
C +CL ++ EL PC H FH C++KWL++ CPLC +L+
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356
EC +C Y G + LPCNH FH +CIV WL+ + +CP+C+ ++ N
Sbjct: 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 302 LPEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPLCKYNIL 353
+ + EC +CL+ EDG E LP C H FH+ C+ WL ++TCPLC+ ++
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNE 357
L ++ ECCIC+ DG LPC H F CI KW + CP+C+ + NE
Sbjct: 12 LTDEEECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCK 349
C IC S Y G LPC+H+FH C+ WL+ + TCP+C+
Sbjct: 43 CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 308 CCICLSSYEDGTELH-ALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
C ICL ED + ALPC H F CI +W++ N TCPLCK +
Sbjct: 8 CPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354
C +C + D T + + C H F TCIV++L+ + CP+C + K
Sbjct: 18 CVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPICDVQVHK 62
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354
C +C + D T + + C H F TCIV++L+ + CP+C + K
Sbjct: 18 CVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPICDVQVHK 62
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354
C +C + D T + + C H F TCIV++L+ + CP+C + K
Sbjct: 14 CVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPICDVQVHK 58
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 301 LLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
+L + +C IC + E L C H F S CI +W+K CP+C+ +I
Sbjct: 49 VLENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 301 LLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
+L + +C IC + E L C H F S CI +W+K CP+C+ +I
Sbjct: 60 VLENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 325 PCNHHFHSTCIVKWLKMNATCPLCKYN 351
CNH FH+ C+ W+K N CPLC+ +
Sbjct: 47 ECNHSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 301 LLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
+L + +C IC + E L C H F S CI +W+K CP+C+ +I
Sbjct: 49 VLENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 36.2 bits (82), Expect = 0.032, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 326 CNHHFHSTCIVKWLKMNATCPL 347
CNH FH CI +WLK CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 35.8 bits (81), Expect = 0.035, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 326 CNHHFHSTCIVKWLKMNATCPL 347
CNH FH CI +WLK CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 35.8 bits (81), Expect = 0.042, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 326 CNHHFHSTCIVKWLKMNATCPL 347
CNH FH CI +WLK CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 35.8 bits (81), Expect = 0.042, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 326 CNHHFHSTCIVKWLKMNATCPL 347
CNH FH CI +WLK CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 35.8 bits (81), Expect = 0.042, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 326 CNHHFHSTCIVKWLKMNATCPL 347
CNH FH CI +WLK CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 35.4 bits (80), Expect = 0.048, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 326 CNHHFHSTCIVKWLKMNATCPL 347
CNH FH CI +WLK CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 35.0 bits (79), Expect = 0.056, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 326 CNHHFHSTCIVKWLKMNATCPL 347
CNH FH CI +WLK CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 308 CCICLSSY----EDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
C IC+ Y ++G + + C H F S C+ LK TCP C+ I
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 308 CCICLSSY----EDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
C IC+ Y ++G + + C H F S C+ LK TCP C+ I
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 308 CCICLSSY----EDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
C IC+ Y ++G + + C H F S C+ LK TCP C+ I
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWL---KMNATCPLCKYNILKGNEQ 358
EC ICL ++ + C+H F C++K L K + CPLCK +I K + Q
Sbjct: 23 ECPICLELIKEPV---STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 322 HALPCNHHFHSTCIVKWLKMNATCPLCK 349
H LPC H H TC + LK CPLC
Sbjct: 23 HVLPCGHLLHRTCYEEMLKEGYRCPLCS 50
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 322 HALPCNHHFHSTCIVKWLKMNATCPLCKYN 351
H LPC H H TC + LK CPLC ++
Sbjct: 23 HVLPCGHLLHRTCYEEMLKEGYRCPLCMHS 52
>pdb|4B7Y|C Chain C, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B7Y|D Chain D, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B86|C Chain C, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|D Chain D, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|G Chain G, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|H Chain H, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|K Chain K, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|L Chain L, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
Length = 116
Score = 32.0 bits (71), Expect = 0.51, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 301 LLP---EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCK-YNILKGN 356
LLP + CC+C +D C H+ TC K + M +C CK Y + N
Sbjct: 34 LLPYFRQSLSCCVCGHLLQDPIAPTNSTCQHYVCKTCKGKKMMMKPSCSWCKDYEQFEEN 93
Query: 357 EQV 359
+Q+
Sbjct: 94 KQL 96
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 308 CCICLSSYEDGTELHALPCN-----HHFHSTCIVKWLKMNAT--CPLCKYNIL 353
C IC +D + L PC+ H H C+ +W+K + T C LCKY +
Sbjct: 18 CRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPL 347
L EC ICL + + + PC H F CI+K ++ CP+
Sbjct: 22 LESKYECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPV 65
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPL 347
L EC ICL + + + PC H F CI+K ++ CP+
Sbjct: 15 LESKYECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNAT-CPLCKYNILKGNEQV 359
C IC E+ ++ PC H ++C+ W + + CP C+ I KG E +
Sbjct: 29 CKICA---ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI-KGTEPI 77
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPL 347
EC ICL + + + PC H F CI+K ++ CP+
Sbjct: 8 ECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPV 46
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNAT-CPLCKYNILKGNEQV 359
C IC E+ ++ PC H ++C+ W + CP C+ I KG E +
Sbjct: 30 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI-KGTEPI 78
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNAT-CPLCKYNILKGNEQV 359
C IC E+ ++ PC H ++C+ W + CP C+ I KG E +
Sbjct: 27 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI-KGTEPI 75
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 307 ECCICLSSY----EDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
C IC+ Y ++G + + C H F S C+ LK TCP C+ I
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 307 ECCICLSSY----EDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352
C IC+ Y ++G + + C H F S C+ LK TCP C+ I
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNAT-CPLCKYNILKGNEQV 359
C IC E+ ++ PC H ++C+ W + + CP C+ I KG E +
Sbjct: 341 CKICA---ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI-KGTEPI 389
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNAT-CPLCKYNILKGNEQV 359
C IC E+ ++ PC H ++C+ W + CP C+ I KG E +
Sbjct: 337 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI-KGTEPI 385
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNAT-CPLCKYNILKGNEQV 359
C IC E+ ++ PC H ++C+ W + CP C+ I KG E +
Sbjct: 337 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI-KGTEPI 385
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNAT-CPLCKYNILKGNEQV 359
C IC E+ ++ PC H ++C+ W + CP C+ I KG E +
Sbjct: 335 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI-KGTEPI 383
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNAT-CPLCKYNILKGNEQV 359
C IC E+ ++ PC H ++C+ W + CP C+ I KG E +
Sbjct: 335 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI-KGTEPI 383
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,326,952
Number of Sequences: 62578
Number of extensions: 272257
Number of successful extensions: 350
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 52
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)