Query 018193
Match_columns 359
No_of_seqs 299 out of 2175
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:55:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 8.4E-19 1.8E-23 169.9 7.0 78 252-356 203-281 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 6.7E-16 1.5E-20 107.2 2.3 44 306-349 1-44 (44)
3 COG5540 RING-finger-containing 99.4 9.3E-14 2E-18 130.7 3.8 51 304-354 322-373 (374)
4 PF12678 zf-rbx1: RING-H2 zinc 99.4 5.7E-13 1.2E-17 102.7 4.1 45 305-349 19-73 (73)
5 COG5243 HRD1 HRD ubiquitin lig 99.3 1.1E-12 2.4E-17 126.3 5.3 57 297-353 279-345 (491)
6 PHA02929 N1R/p28-like protein; 99.3 1.4E-12 3.1E-17 121.5 4.4 50 304-353 173-227 (238)
7 PLN03208 E3 ubiquitin-protein 99.0 2E-10 4.4E-15 103.3 4.5 50 303-355 16-81 (193)
8 cd00162 RING RING-finger (Real 99.0 2.3E-10 5.1E-15 77.9 3.1 44 307-352 1-45 (45)
9 PF13920 zf-C3HC4_3: Zinc fing 99.0 2.3E-10 5.1E-15 81.5 2.7 46 305-353 2-48 (50)
10 KOG0317 Predicted E3 ubiquitin 98.9 5.8E-10 1.3E-14 105.0 3.9 55 298-355 232-286 (293)
11 PF13923 zf-C3HC4_2: Zinc fing 98.9 6.9E-10 1.5E-14 75.0 3.2 39 308-348 1-39 (39)
12 KOG0802 E3 ubiquitin ligase [P 98.9 2.4E-10 5.3E-15 119.1 1.4 56 301-356 287-344 (543)
13 PF12861 zf-Apc11: Anaphase-pr 98.9 6.5E-10 1.4E-14 87.2 3.2 51 303-353 19-82 (85)
14 KOG0823 Predicted E3 ubiquitin 98.9 8E-10 1.7E-14 101.2 4.1 51 301-354 43-96 (230)
15 PHA02926 zinc finger-like prot 98.8 3.4E-09 7.4E-14 96.6 2.6 51 303-353 168-230 (242)
16 PF14634 zf-RING_5: zinc-RING 98.8 4.7E-09 1E-13 72.8 2.7 44 307-350 1-44 (44)
17 PF00097 zf-C3HC4: Zinc finger 98.7 6.4E-09 1.4E-13 70.7 2.6 39 308-348 1-41 (41)
18 KOG0828 Predicted E3 ubiquitin 98.7 1.5E-08 3.3E-13 101.1 6.0 51 304-354 570-635 (636)
19 smart00184 RING Ring finger. E 98.7 7.8E-09 1.7E-13 67.9 2.6 38 308-348 1-39 (39)
20 KOG0320 Predicted E3 ubiquitin 98.7 1E-08 2.2E-13 90.4 2.8 50 305-355 131-180 (187)
21 smart00504 Ubox Modified RING 98.7 2.2E-08 4.8E-13 74.1 4.1 46 306-354 2-47 (63)
22 KOG1734 Predicted RING-contain 98.7 1.4E-08 2.9E-13 94.8 3.3 51 303-353 222-281 (328)
23 PF15227 zf-C3HC4_4: zinc fing 98.6 2.1E-08 4.6E-13 68.9 2.6 38 308-348 1-42 (42)
24 TIGR00599 rad18 DNA repair pro 98.5 6.8E-08 1.5E-12 96.4 3.0 50 303-355 24-73 (397)
25 smart00744 RINGv The RING-vari 98.5 8.2E-08 1.8E-12 68.2 2.5 42 307-349 1-49 (49)
26 COG5194 APC11 Component of SCF 98.4 1.7E-07 3.6E-12 72.1 2.6 48 306-353 21-81 (88)
27 KOG1493 Anaphase-promoting com 98.3 8.4E-08 1.8E-12 73.1 -0.0 50 303-352 18-80 (84)
28 PF11793 FANCL_C: FANCL C-term 98.3 2E-07 4.4E-12 71.2 0.9 49 305-353 2-66 (70)
29 PF13445 zf-RING_UBOX: RING-ty 98.2 7.7E-07 1.7E-11 61.5 2.7 38 308-346 1-43 (43)
30 COG5219 Uncharacterized conser 98.2 3.6E-07 7.8E-12 97.2 -0.1 50 301-353 1465-1523(1525)
31 COG5574 PEX10 RING-finger-cont 98.2 8.2E-07 1.8E-11 83.0 2.1 51 303-356 213-265 (271)
32 KOG2164 Predicted E3 ubiquitin 98.1 1.4E-06 3E-11 88.1 3.2 49 305-356 186-239 (513)
33 PF04564 U-box: U-box domain; 98.1 2E-06 4.3E-11 66.1 2.2 48 304-354 3-51 (73)
34 KOG2930 SCF ubiquitin ligase, 97.9 5.3E-06 1.1E-10 66.9 1.8 47 305-351 46-106 (114)
35 KOG0804 Cytoplasmic Zn-finger 97.9 5.5E-06 1.2E-10 82.5 1.8 49 303-353 173-222 (493)
36 KOG4445 Uncharacterized conser 97.9 3E-06 6.4E-11 80.4 -0.1 52 306-357 116-190 (368)
37 KOG0825 PHD Zn-finger protein 97.8 2.9E-06 6.3E-11 89.0 -1.2 49 306-354 124-172 (1134)
38 KOG2177 Predicted E3 ubiquitin 97.8 7.5E-06 1.6E-10 76.5 1.0 45 303-350 11-55 (386)
39 KOG0287 Postreplication repair 97.7 8.2E-06 1.8E-10 78.6 0.8 46 306-354 24-69 (442)
40 KOG4265 Predicted E3 ubiquitin 97.6 3.7E-05 7.9E-10 75.0 3.5 49 303-354 288-337 (349)
41 COG5432 RAD18 RING-finger-cont 97.5 3.6E-05 7.8E-10 72.9 2.0 45 306-353 26-70 (391)
42 KOG1039 Predicted E3 ubiquitin 97.5 3.5E-05 7.5E-10 75.8 1.9 50 303-352 159-220 (344)
43 KOG0311 Predicted E3 ubiquitin 97.5 1E-05 2.2E-10 78.6 -2.3 51 303-356 41-93 (381)
44 KOG1941 Acetylcholine receptor 97.3 6.1E-05 1.3E-09 73.9 0.1 46 305-350 365-413 (518)
45 PF14835 zf-RING_6: zf-RING of 97.2 0.00012 2.7E-09 54.5 1.2 49 306-358 8-56 (65)
46 KOG4159 Predicted E3 ubiquitin 97.1 0.00025 5.4E-09 71.2 1.9 49 303-354 82-130 (398)
47 PF05883 Baculo_RING: Baculovi 97.1 0.00017 3.6E-09 61.6 0.5 36 304-339 25-66 (134)
48 KOG4172 Predicted E3 ubiquitin 97.1 0.00011 2.3E-09 52.8 -0.6 46 305-353 7-54 (62)
49 KOG1428 Inhibitor of type V ad 96.9 0.00044 9.5E-09 76.8 2.6 52 302-353 3483-3544(3738)
50 KOG0297 TNF receptor-associate 96.9 0.0005 1.1E-08 69.2 2.4 52 303-356 19-70 (391)
51 KOG1785 Tyrosine kinase negati 96.7 0.00055 1.2E-08 67.6 1.0 45 307-354 371-417 (563)
52 KOG0801 Predicted E3 ubiquitin 96.6 0.00084 1.8E-08 58.7 1.5 38 296-333 168-205 (205)
53 PF12906 RINGv: RING-variant d 96.5 0.0019 4.1E-08 45.4 2.2 40 308-348 1-47 (47)
54 PHA02862 5L protein; Provision 96.4 0.0017 3.6E-08 55.9 2.1 43 306-352 3-52 (156)
55 PF11789 zf-Nse: Zinc-finger o 96.4 0.0018 3.9E-08 47.4 1.9 41 305-347 11-53 (57)
56 KOG3970 Predicted E3 ubiquitin 96.4 0.0025 5.4E-08 58.6 3.1 53 304-357 49-109 (299)
57 KOG0978 E3 ubiquitin ligase in 96.3 0.00088 1.9E-08 71.1 -0.2 49 305-356 643-692 (698)
58 PHA02825 LAP/PHD finger-like p 96.0 0.0044 9.5E-08 54.3 2.7 46 303-352 6-58 (162)
59 PF10367 Vps39_2: Vacuolar sor 96.0 0.0039 8.6E-08 50.5 1.9 36 301-337 74-109 (109)
60 KOG1814 Predicted E3 ubiquitin 95.9 0.0032 6.8E-08 62.6 1.2 47 303-349 182-236 (445)
61 PF14570 zf-RING_4: RING/Ubox 95.8 0.0043 9.3E-08 43.8 1.2 43 308-351 1-46 (48)
62 COG5152 Uncharacterized conser 95.6 0.0036 7.9E-08 56.6 0.4 42 307-351 198-239 (259)
63 KOG1952 Transcription factor N 95.5 0.0053 1.1E-07 65.9 1.2 50 301-350 187-244 (950)
64 KOG1002 Nucleotide excision re 95.4 0.005 1.1E-07 62.9 0.7 48 304-354 535-587 (791)
65 KOG1571 Predicted E3 ubiquitin 95.4 0.013 2.8E-07 57.5 3.2 44 304-353 304-347 (355)
66 KOG0827 Predicted E3 ubiquitin 95.2 0.00093 2E-08 65.8 -5.3 51 305-355 196-247 (465)
67 KOG2879 Predicted E3 ubiquitin 95.1 0.024 5.3E-07 53.8 4.0 50 302-353 236-287 (298)
68 PHA03096 p28-like protein; Pro 94.9 0.0096 2.1E-07 57.4 0.9 44 306-349 179-230 (284)
69 KOG1813 Predicted E3 ubiquitin 94.7 0.018 3.9E-07 55.1 2.0 44 306-352 242-285 (313)
70 KOG0826 Predicted E3 ubiquitin 94.6 0.056 1.2E-06 52.5 5.2 47 300-349 295-342 (357)
71 KOG3039 Uncharacterized conser 94.5 0.039 8.4E-07 51.6 3.9 53 304-356 220-273 (303)
72 KOG1645 RING-finger-containing 94.0 0.032 7E-07 55.6 2.2 33 319-351 20-54 (463)
73 PF14447 Prok-RING_4: Prokaryo 93.7 0.042 9.1E-07 39.8 1.9 47 306-357 8-54 (55)
74 KOG4692 Predicted E3 ubiquitin 93.6 0.04 8.8E-07 54.0 2.1 48 303-353 420-467 (489)
75 KOG2660 Locus-specific chromos 93.6 0.019 4.2E-07 55.7 -0.2 49 303-353 13-61 (331)
76 COG5222 Uncharacterized conser 93.4 0.033 7.2E-07 53.4 1.1 44 306-352 275-321 (427)
77 PF08746 zf-RING-like: RING-li 92.3 0.069 1.5E-06 36.8 1.2 41 308-348 1-43 (43)
78 PF07800 DUF1644: Protein of u 92.2 0.14 3.1E-06 44.9 3.3 37 304-340 1-47 (162)
79 KOG1940 Zn-finger protein [Gen 92.1 0.054 1.2E-06 51.9 0.7 45 306-350 159-204 (276)
80 KOG1609 Protein involved in mR 91.6 0.12 2.6E-06 49.9 2.5 49 305-353 78-134 (323)
81 KOG4275 Predicted E3 ubiquitin 91.2 0.051 1.1E-06 52.0 -0.6 43 305-354 300-343 (350)
82 KOG3268 Predicted E3 ubiquitin 90.8 0.14 3.1E-06 45.7 1.9 32 323-354 187-229 (234)
83 COG5236 Uncharacterized conser 90.4 0.2 4.3E-06 49.2 2.6 49 300-351 56-106 (493)
84 PF04641 Rtf2: Rtf2 RING-finge 89.0 0.47 1E-05 45.2 4.1 51 303-354 111-162 (260)
85 KOG2114 Vacuolar assembly/sort 88.5 0.16 3.4E-06 55.0 0.5 42 306-352 841-882 (933)
86 PF03854 zf-P11: P-11 zinc fin 88.5 0.19 4.1E-06 35.3 0.7 33 323-355 15-48 (50)
87 KOG2034 Vacuolar sorting prote 88.4 0.19 4.2E-06 54.6 1.1 38 301-339 813-850 (911)
88 KOG1001 Helicase-like transcri 88.3 0.18 3.9E-06 54.3 0.8 45 306-354 455-501 (674)
89 KOG0802 E3 ubiquitin ligase [P 87.8 0.23 5E-06 52.3 1.2 50 300-356 474-523 (543)
90 KOG3053 Uncharacterized conser 87.3 0.22 4.7E-06 47.0 0.5 49 304-352 19-81 (293)
91 KOG3002 Zn finger protein [Gen 85.9 0.49 1.1E-05 46.1 2.2 45 303-354 46-92 (299)
92 KOG2932 E3 ubiquitin ligase in 85.7 0.27 5.7E-06 47.6 0.3 44 306-353 91-134 (389)
93 KOG0298 DEAD box-containing he 84.5 0.23 4.9E-06 56.1 -0.9 46 305-352 1153-1198(1394)
94 PF10272 Tmpp129: Putative tra 84.3 0.61 1.3E-05 46.5 2.1 28 326-353 311-351 (358)
95 COG5183 SSM4 Protein involved 84.1 0.62 1.3E-05 50.4 2.1 49 303-352 10-65 (1175)
96 KOG3161 Predicted E3 ubiquitin 83.3 0.25 5.5E-06 52.0 -1.1 43 306-351 12-55 (861)
97 KOG4362 Transcriptional regula 83.0 0.28 6E-06 52.4 -0.9 49 305-356 21-72 (684)
98 KOG0309 Conserved WD40 repeat- 82.5 0.71 1.5E-05 49.6 1.8 25 323-347 1045-1069(1081)
99 COG5175 MOT2 Transcriptional r 81.8 0.8 1.7E-05 44.9 1.8 53 303-355 12-66 (480)
100 KOG1100 Predicted E3 ubiquitin 81.7 1.2 2.7E-05 41.0 2.9 40 308-354 161-201 (207)
101 KOG3899 Uncharacterized conser 81.6 0.62 1.4E-05 44.8 0.9 28 326-353 325-365 (381)
102 PF14446 Prok-RING_1: Prokaryo 80.4 2.1 4.6E-05 31.0 3.1 43 305-351 5-50 (54)
103 KOG3005 GIY-YIG type nuclease 79.7 0.83 1.8E-05 43.5 1.0 47 305-351 182-241 (276)
104 KOG1829 Uncharacterized conser 78.5 0.69 1.5E-05 48.8 0.1 41 305-348 511-556 (580)
105 KOG1812 Predicted E3 ubiquitin 78.4 0.76 1.6E-05 46.4 0.4 38 305-342 146-184 (384)
106 KOG3842 Adaptor protein Pellin 73.1 3 6.4E-05 40.7 2.8 55 299-353 335-414 (429)
107 COG5220 TFB3 Cdk activating ki 72.5 1.7 3.6E-05 40.8 1.0 47 304-350 9-61 (314)
108 KOG2817 Predicted E3 ubiquitin 72.4 2.8 6.1E-05 42.0 2.6 49 303-351 332-383 (394)
109 KOG0825 PHD Zn-finger protein 69.2 2.9 6.2E-05 45.4 2.0 51 304-354 95-155 (1134)
110 KOG4185 Predicted E3 ubiquitin 65.8 3.9 8.5E-05 39.3 2.1 32 321-352 22-54 (296)
111 PF13901 DUF4206: Domain of un 65.2 4.8 0.0001 36.9 2.4 41 305-350 152-197 (202)
112 PF05290 Baculo_IE-1: Baculovi 65.0 4.3 9.2E-05 34.8 1.8 49 304-355 79-134 (140)
113 KOG1815 Predicted E3 ubiquitin 64.8 3.1 6.7E-05 42.7 1.2 37 303-341 68-104 (444)
114 KOG2066 Vacuolar assembly/sort 64.4 2.7 5.8E-05 45.6 0.6 45 303-348 782-830 (846)
115 KOG0269 WD40 repeat-containing 63.4 5 0.00011 43.4 2.4 42 305-347 779-820 (839)
116 smart00249 PHD PHD zinc finger 62.5 4.7 0.0001 26.6 1.4 30 308-337 2-31 (47)
117 KOG1812 Predicted E3 ubiquitin 60.9 3.9 8.3E-05 41.3 1.0 46 303-348 304-351 (384)
118 smart00132 LIM Zinc-binding do 58.3 11 0.00024 23.8 2.6 37 308-353 2-38 (39)
119 PF02891 zf-MIZ: MIZ/SP-RING z 56.6 4 8.7E-05 28.9 0.2 42 307-351 4-50 (50)
120 PF00628 PHD: PHD-finger; Int 56.0 7.6 0.00016 26.9 1.6 43 308-350 2-50 (51)
121 KOG4718 Non-SMC (structural ma 55.6 5.2 0.00011 36.9 0.8 42 305-348 181-222 (235)
122 PHA02898 virion envelope prote 54.6 62 0.0013 25.8 6.5 38 95-132 33-72 (92)
123 PF14169 YdjO: Cold-inducible 53.5 6.6 0.00014 28.9 0.9 16 342-357 39-54 (59)
124 COG5524 Bacteriorhodopsin [Gen 53.0 55 0.0012 31.7 7.2 107 58-195 98-214 (285)
125 COG3671 Predicted membrane pro 51.5 73 0.0016 26.9 6.8 47 206-252 68-114 (125)
126 PF03119 DNA_ligase_ZBD: NAD-d 50.5 7.4 0.00016 24.2 0.7 16 344-359 1-16 (28)
127 PF13717 zinc_ribbon_4: zinc-r 50.0 9 0.00019 25.2 1.1 26 306-331 3-36 (36)
128 PF13239 2TM: 2TM domain 43.4 38 0.00083 26.2 3.9 60 54-124 2-62 (83)
129 cd00350 rubredoxin_like Rubred 42.9 17 0.00038 23.2 1.6 19 326-350 7-25 (33)
130 KOG2041 WD40 repeat protein [G 42.2 19 0.00042 39.1 2.6 48 302-353 1128-1185(1189)
131 PF07975 C1_4: TFIIH C1-like d 40.5 20 0.00044 25.6 1.7 41 308-349 2-50 (51)
132 PF04710 Pellino: Pellino; In 40.5 9.3 0.0002 38.5 0.0 45 304-351 276-337 (416)
133 PRK11827 hypothetical protein; 38.7 12 0.00027 27.7 0.4 20 336-355 2-21 (60)
134 PF04710 Pellino: Pellino; In 38.7 10 0.00022 38.2 0.0 49 305-353 328-401 (416)
135 PF13748 ABC_membrane_3: ABC t 38.2 43 0.00094 31.6 4.0 46 79-133 119-164 (237)
136 PF00412 LIM: LIM domain; Int 38.2 31 0.00068 24.1 2.5 39 308-355 1-39 (58)
137 PF04423 Rad50_zn_hook: Rad50 37.9 12 0.00026 26.6 0.2 14 342-355 20-33 (54)
138 KOG2068 MOT2 transcription fac 37.6 24 0.00052 34.7 2.3 49 306-355 250-300 (327)
139 KOG3039 Uncharacterized conser 36.1 30 0.00064 32.9 2.6 38 300-340 38-75 (303)
140 PF07649 C1_3: C1-like domain; 35.1 25 0.00054 21.8 1.4 29 307-335 2-30 (30)
141 COG4214 XylH ABC-type xylose t 35.1 1.9E+02 0.004 29.2 8.0 27 109-135 181-207 (394)
142 KOG1729 FYVE finger containing 34.7 8.1 0.00018 37.5 -1.4 38 306-343 215-252 (288)
143 PF07191 zinc-ribbons_6: zinc- 33.4 7.2 0.00016 29.8 -1.6 39 306-352 2-40 (70)
144 PF11712 Vma12: Endoplasmic re 33.2 73 0.0016 27.3 4.5 27 166-192 78-104 (142)
145 PLN02189 cellulose synthase 30.5 46 0.001 37.8 3.3 50 304-353 33-87 (1040)
146 PF10329 DUF2417: Region of un 29.9 1.3E+02 0.0028 28.4 5.7 23 169-191 36-58 (232)
147 KOG3579 Predicted E3 ubiquitin 29.5 32 0.00069 33.3 1.6 35 305-342 268-306 (352)
148 PF15048 OSTbeta: Organic solu 29.4 48 0.001 28.1 2.5 21 64-92 31-51 (125)
149 PF06906 DUF1272: Protein of u 29.3 70 0.0015 23.4 3.0 45 307-355 7-54 (57)
150 PF09723 Zn-ribbon_8: Zinc rib 29.2 27 0.00057 23.6 0.8 28 322-350 7-34 (42)
151 KOG3113 Uncharacterized conser 29.0 40 0.00088 32.1 2.2 51 304-356 110-161 (293)
152 KOG2071 mRNA cleavage and poly 29.0 27 0.00059 36.9 1.2 36 303-338 511-556 (579)
153 PRK05978 hypothetical protein; 28.9 31 0.00068 30.2 1.4 22 328-354 43-64 (148)
154 PF13719 zinc_ribbon_5: zinc-r 28.7 37 0.0008 22.3 1.4 26 306-331 3-36 (37)
155 PF06844 DUF1244: Protein of u 28.3 29 0.00062 26.2 0.9 12 329-340 11-22 (68)
156 KOG2927 Membrane component of 27.8 1.4E+02 0.0029 30.0 5.7 29 103-132 186-214 (372)
157 PLN02638 cellulose synthase A 27.7 80 0.0017 36.1 4.6 50 304-353 16-70 (1079)
158 PF05677 DUF818: Chlamydia CHL 26.9 84 0.0018 31.5 4.1 51 55-116 17-68 (365)
159 KOG4185 Predicted E3 ubiquitin 26.7 11 0.00024 36.1 -2.0 47 305-351 207-265 (296)
160 PF01363 FYVE: FYVE zinc finge 26.5 38 0.00083 24.9 1.4 36 305-340 9-45 (69)
161 PRK10633 hypothetical protein; 26.3 2.3E+02 0.0051 22.2 5.7 20 173-192 13-32 (80)
162 KOG1815 Predicted E3 ubiquitin 26.0 30 0.00065 35.5 0.9 39 304-342 225-268 (444)
163 PF02656 DUF202: Domain of unk 25.9 1.7E+02 0.0036 21.7 4.8 44 82-125 17-63 (73)
164 KOG4050 Glutamate transporter 25.7 1.3E+02 0.0029 26.7 4.7 64 171-235 72-138 (188)
165 PF14311 DUF4379: Domain of un 25.2 47 0.001 23.6 1.5 22 326-348 34-55 (55)
166 KOG3799 Rab3 effector RIM1 and 25.0 19 0.0004 31.1 -0.7 49 302-350 62-115 (169)
167 PF06814 Lung_7-TM_R: Lung sev 24.8 5.3E+02 0.012 24.5 9.3 61 72-132 45-106 (295)
168 PF02985 HEAT: HEAT repeat; I 24.3 60 0.0013 20.0 1.8 17 46-62 9-25 (31)
169 PF10856 DUF2678: Protein of u 23.7 67 0.0015 27.0 2.4 48 80-129 36-84 (118)
170 TIGR00622 ssl1 transcription f 23.5 90 0.002 26.0 3.1 44 306-349 56-110 (112)
171 PF13061 DUF3923: Protein of u 23.3 1.4E+02 0.003 22.5 3.8 50 72-121 2-59 (66)
172 PF15431 TMEM190: Transmembran 23.3 96 0.0021 25.9 3.2 30 98-127 49-81 (134)
173 COG3752 Steroid 5-alpha reduct 22.9 1.9E+02 0.004 27.8 5.4 52 76-133 42-93 (272)
174 PF10571 UPF0547: Uncharacteri 22.8 47 0.001 20.3 1.0 14 338-351 10-23 (26)
175 COG5109 Uncharacterized conser 22.5 59 0.0013 32.0 2.1 46 304-349 335-383 (396)
176 KOG3195 Uncharacterized membra 22.5 1.7E+02 0.0038 26.8 4.9 48 69-129 31-79 (213)
177 PF05297 Herpes_LMP1: Herpesvi 22.1 30 0.00064 33.7 0.0 17 206-222 54-70 (381)
178 PF13832 zf-HC5HC2H_2: PHD-zin 21.8 72 0.0016 25.7 2.2 32 305-338 55-88 (110)
179 PLN02436 cellulose synthase A 21.4 87 0.0019 35.8 3.4 50 304-353 35-89 (1094)
180 PF07857 DUF1632: CEO family ( 20.7 7.4E+02 0.016 23.6 9.7 46 79-124 86-132 (254)
181 PF01036 Bac_rhodopsin: Bacter 20.2 1E+02 0.0023 28.2 3.2 101 62-195 71-181 (222)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.4e-19 Score=169.90 Aligned_cols=78 Identities=35% Similarity=0.779 Sum_probs=66.8
Q ss_pred cCCCCCHHHhhcCCCceeeeccCcccccCCCCcccccccCCCccccccccCCCCccccccCCCccCCCceEEcCCCceeC
Q 018193 252 GQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFH 331 (359)
Q Consensus 252 ~~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH 331 (359)
+.++..+..++++|.+.|+...+++ .. ..|+||||+|++||++|.|||+|.||
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~--------------------------~~-~~CaIClEdY~~GdklRiLPC~H~FH 255 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDED--------------------------AT-DTCAICLEDYEKGDKLRILPCSHKFH 255 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccC--------------------------CC-ceEEEeecccccCCeeeEecCCCchh
Confidence 5567889999999999998755431 11 58999999999999999999999999
Q ss_pred hhhHHHhhhcCC-CCCcccccccCCC
Q 018193 332 STCIVKWLKMNA-TCPLCKYNILKGN 356 (359)
Q Consensus 332 ~~CId~WL~~~~-tCPlCR~~I~~~~ 356 (359)
..|||+||..+. .||+||+++.++.
T Consensus 256 ~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 256 VNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hccchhhHhhcCccCCCCCCcCCCCC
Confidence 999999998875 4999999998754
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.58 E-value=6.7e-16 Score=107.24 Aligned_cols=44 Identities=52% Similarity=1.276 Sum_probs=40.9
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccc
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCK 349 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR 349 (359)
++|+||+++|++++.+..++|+|.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999999999999999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=9.3e-14 Score=130.66 Aligned_cols=51 Identities=39% Similarity=1.013 Sum_probs=47.5
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhh-cCCCCCcccccccC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPLCKYNILK 354 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~-~~~tCPlCR~~I~~ 354 (359)
.+.+|+|||++|-+++.++.|||+|.||..||++|+. .+..||+||.+|++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3478999999999999999999999999999999997 78899999999875
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.35 E-value=5.7e-13 Score=102.69 Aligned_cols=45 Identities=49% Similarity=1.061 Sum_probs=36.9
Q ss_pred CccccccCCCccC----------CCceEEcCCCceeChhhHHHhhhcCCCCCccc
Q 018193 305 DAECCICLSSYED----------GTELHALPCNHHFHSTCIVKWLKMNATCPLCK 349 (359)
Q Consensus 305 ~~~C~ICL~~~~~----------~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR 349 (359)
++.|+||++.|.+ +-.+...+|+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4569999999942 23556668999999999999999999999997
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.1e-12 Score=126.35 Aligned_cols=57 Identities=32% Similarity=0.858 Sum_probs=47.5
Q ss_pred cccccCCCCccccccCCC-ccCC---------CceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 297 NERILLPEDAECCICLSS-YEDG---------TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 297 ~~~~~~~~~~~C~ICL~~-~~~~---------~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
.++++..+|..|.||+++ |+.+ ...++|||||+||..|++.|+++++|||.||.++.
T Consensus 279 t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 279 TEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred hhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 344556778899999999 5543 24478999999999999999999999999999953
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.30 E-value=1.4e-12 Score=121.54 Aligned_cols=50 Identities=36% Similarity=0.796 Sum_probs=41.9
Q ss_pred CCccccccCCCccCCCc----eEE-cCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 304 EDAECCICLSSYEDGTE----LHA-LPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~----lr~-LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
.+.+|+||++.+.+++. +.. ++|+|.||.+||++|++.+.+||+||.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 45789999999876541 234 469999999999999999999999999875
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.03 E-value=2e-10 Score=103.30 Aligned_cols=50 Identities=34% Similarity=0.753 Sum_probs=42.1
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc----------------CCCCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM----------------NATCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~----------------~~tCPlCR~~I~~~ 355 (359)
.++.+|+||++.++++ ..++|||.||..||.+|+.. ..+||+||.+|...
T Consensus 16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 4568899999998876 67899999999999999852 34799999998653
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.00 E-value=2.3e-10 Score=77.95 Aligned_cols=44 Identities=50% Similarity=1.103 Sum_probs=37.1
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCcccccc
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNI 352 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I 352 (359)
+|+||++.+ .+.+..++|+|.||..|+++|++. +..||.||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 344556669999999999999998 77899999864
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.99 E-value=2.3e-10 Score=81.47 Aligned_cols=46 Identities=39% Similarity=0.875 Sum_probs=39.7
Q ss_pred CccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCccccccc
Q 018193 305 DAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
+..|.||++...+ ...+||||. |+.+|+++|++.+.+||+||++|.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999998654 588899999 999999999999999999999885
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.8e-10 Score=105.01 Aligned_cols=55 Identities=29% Similarity=0.733 Sum_probs=47.3
Q ss_pred ccccCCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 298 ERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 298 ~~~~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
+....+.+..|.+||+..+++ -.+||||+||..||..|+..++.||+||....+.
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 334445667899999998877 7899999999999999999999999999987654
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.93 E-value=6.9e-10 Score=74.96 Aligned_cols=39 Identities=44% Similarity=1.059 Sum_probs=33.8
Q ss_pred ccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcc
Q 018193 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLC 348 (359)
Q Consensus 308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlC 348 (359)
|+||++.+.+ .+..++|||.|+.+|+.+|++.+.+||.|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998877 45788999999999999999999999998
No 12
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.4e-10 Score=119.13 Aligned_cols=56 Identities=34% Similarity=0.816 Sum_probs=48.7
Q ss_pred cCCCCccccccCCCccCCCc--eEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193 301 LLPEDAECCICLSSYEDGTE--LHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356 (359)
Q Consensus 301 ~~~~~~~C~ICL~~~~~~~~--lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 356 (359)
....+..|+||++++..+.+ .++|||+|+||..|+.+|+++.++||+||..+..++
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYV 344 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhccc
Confidence 44567899999999988665 689999999999999999999999999999665543
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.92 E-value=6.5e-10 Score=87.24 Aligned_cols=51 Identities=35% Similarity=0.863 Sum_probs=40.1
Q ss_pred CCCccccccCCCcc--------CCC--ceEEcCCCceeChhhHHHhhhc---CCCCCccccccc
Q 018193 303 PEDAECCICLSSYE--------DGT--ELHALPCNHHFHSTCIVKWLKM---NATCPLCKYNIL 353 (359)
Q Consensus 303 ~~~~~C~ICL~~~~--------~~~--~lr~LpC~H~FH~~CId~WL~~---~~tCPlCR~~I~ 353 (359)
.+|+.|.||...|+ .|+ .+..-.|+|.||..||.+|+.. +++||+||++..
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 34778999999997 222 3444459999999999999975 568999999764
No 14
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=8e-10 Score=101.24 Aligned_cols=51 Identities=29% Similarity=0.633 Sum_probs=42.9
Q ss_pred cCCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC---CCCCcccccccC
Q 018193 301 LLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN---ATCPLCKYNILK 354 (359)
Q Consensus 301 ~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~---~tCPlCR~~I~~ 354 (359)
......+|.|||+.=+|+ ..+.|||.||..||.+||..+ +.||+||..|..
T Consensus 43 ~~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 345668999999987776 778899999999999999864 468999998864
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.76 E-value=3.4e-09 Score=96.65 Aligned_cols=51 Identities=31% Similarity=0.739 Sum_probs=38.3
Q ss_pred CCCccccccCCCccCC-----CceEEc-CCCceeChhhHHHhhhcC------CCCCccccccc
Q 018193 303 PEDAECCICLSSYEDG-----TELHAL-PCNHHFHSTCIVKWLKMN------ATCPLCKYNIL 353 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~-----~~lr~L-pC~H~FH~~CId~WL~~~------~tCPlCR~~I~ 353 (359)
+.+.+|+|||+..-+. .....| +|+|.||..||++|.+.+ .+||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4568999999986332 123355 599999999999999753 35999998653
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.76 E-value=4.7e-09 Score=72.81 Aligned_cols=44 Identities=27% Similarity=0.769 Sum_probs=39.7
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccc
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKY 350 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~ 350 (359)
.|.||+++|.+....+.++|||+|+..|+++.......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999977778899999999999999999977779999985
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.73 E-value=6.4e-09 Score=70.69 Aligned_cols=39 Identities=49% Similarity=1.185 Sum_probs=34.5
Q ss_pred ccccCCCccCCCceEEcCCCceeChhhHHHhhh--cCCCCCcc
Q 018193 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLK--MNATCPLC 348 (359)
Q Consensus 308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~--~~~tCPlC 348 (359)
|+||++.++++. ..++|+|.|+..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988774 5889999999999999998 45589998
No 18
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.5e-08 Score=101.15 Aligned_cols=51 Identities=25% Similarity=0.867 Sum_probs=40.8
Q ss_pred CCccccccCCCccC--------------CCceEEcCCCceeChhhHHHhhh-cCCCCCcccccccC
Q 018193 304 EDAECCICLSSYED--------------GTELHALPCNHHFHSTCIVKWLK-MNATCPLCKYNILK 354 (359)
Q Consensus 304 ~~~~C~ICL~~~~~--------------~~~lr~LpC~H~FH~~CId~WL~-~~~tCPlCR~~I~~ 354 (359)
...+|+|||.+++- ......+||+|+||..|+.+|+. .+-.||.||.+++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34679999999861 11234569999999999999999 66699999999864
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.72 E-value=7.8e-09 Score=67.88 Aligned_cols=38 Identities=53% Similarity=1.162 Sum_probs=33.0
Q ss_pred ccccCCCccCCCceEEcCCCceeChhhHHHhhh-cCCCCCcc
Q 018193 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPLC 348 (359)
Q Consensus 308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~-~~~tCPlC 348 (359)
|+||++. .+....++|+|.||..|+++|++ .+.+||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899988 34568899999999999999998 66789998
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1e-08 Score=90.44 Aligned_cols=50 Identities=34% Similarity=0.665 Sum_probs=42.6
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
..-|+|||+.|++... .-+.|||+||++||+.-++....||+|++.|...
T Consensus 131 ~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 3679999999987643 3467999999999999999999999999877653
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.67 E-value=2.2e-08 Score=74.13 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=41.5
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
..|+||.+-++++ ..+||||.|...||.+|++.+.+||.|+.++..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4699999999987 678999999999999999999999999988744
No 22
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.4e-08 Score=94.76 Aligned_cols=51 Identities=33% Similarity=0.734 Sum_probs=43.7
Q ss_pred CCCccccccCCCccCCC-------ceEEcCCCceeChhhHHHhh--hcCCCCCccccccc
Q 018193 303 PEDAECCICLSSYEDGT-------ELHALPCNHHFHSTCIVKWL--KMNATCPLCKYNIL 353 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~-------~lr~LpC~H~FH~~CId~WL--~~~~tCPlCR~~I~ 353 (359)
.+|..|+||=..+...+ ...+|.|+|.||..||+.|. ..++|||-||..+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 46778999999987655 77899999999999999996 56889999998664
No 23
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.62 E-value=2.1e-08 Score=68.92 Aligned_cols=38 Identities=39% Similarity=0.982 Sum_probs=30.5
Q ss_pred ccccCCCccCCCceEEcCCCceeChhhHHHhhhcC----CCCCcc
Q 018193 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN----ATCPLC 348 (359)
Q Consensus 308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~----~tCPlC 348 (359)
|+||++-|.++ ..|+|||.|+..||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999998 889999999999999999764 369988
No 24
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=6.8e-08 Score=96.39 Aligned_cols=50 Identities=28% Similarity=0.630 Sum_probs=43.7
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
.....|+||++.|.+. ..++|+|.||..||..|+.....||+||..+...
T Consensus 24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 4557899999999876 5789999999999999999888999999987653
No 25
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.48 E-value=8.2e-08 Score=68.24 Aligned_cols=42 Identities=31% Similarity=0.816 Sum_probs=33.7
Q ss_pred cccccCCCccCCCceEEcCCC-----ceeChhhHHHhhhcC--CCCCccc
Q 018193 307 ECCICLSSYEDGTELHALPCN-----HHFHSTCIVKWLKMN--ATCPLCK 349 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~-----H~FH~~CId~WL~~~--~tCPlCR 349 (359)
.|-||++ .+++++....||. |.+|.+|+++|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 4445555688985 999999999999654 4899995
No 26
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.40 E-value=1.7e-07 Score=72.12 Aligned_cols=48 Identities=35% Similarity=0.844 Sum_probs=36.3
Q ss_pred ccccccCCCc-----------cCCCceEEc--CCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 306 AECCICLSSY-----------EDGTELHAL--PCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 306 ~~C~ICL~~~-----------~~~~~lr~L--pC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
+.|+||...| ..+++.... -|+|.||..||.+||..++.||++|+...
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 4566666554 345554333 39999999999999999999999998653
No 27
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=8.4e-08 Score=73.12 Aligned_cols=50 Identities=34% Similarity=0.921 Sum_probs=37.4
Q ss_pred CCCccccccCCCcc--------CCCceEEc--CCCceeChhhHHHhhhc---CCCCCcccccc
Q 018193 303 PEDAECCICLSSYE--------DGTELHAL--PCNHHFHSTCIVKWLKM---NATCPLCKYNI 352 (359)
Q Consensus 303 ~~~~~C~ICL~~~~--------~~~~lr~L--pC~H~FH~~CId~WL~~---~~tCPlCR~~I 352 (359)
..++.|.||...|+ .++....+ -|.|.||..||.+|+.. ++.||+||+..
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 34558999999997 23332222 39999999999999965 44799999865
No 28
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.29 E-value=2e-07 Score=71.20 Aligned_cols=49 Identities=33% Similarity=0.773 Sum_probs=23.9
Q ss_pred CccccccCCCccCCCceEEc-----CCCceeChhhHHHhhhc-----------CCCCCccccccc
Q 018193 305 DAECCICLSSYEDGTELHAL-----PCNHHFHSTCIVKWLKM-----------NATCPLCKYNIL 353 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~L-----pC~H~FH~~CId~WL~~-----------~~tCPlCR~~I~ 353 (359)
+.+|.||.+...+++++..+ .|++.||..|+.+||.. ..+||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 35799999987744433222 38999999999999963 136999999874
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.23 E-value=7.7e-07 Score=61.48 Aligned_cols=38 Identities=34% Similarity=0.794 Sum_probs=22.8
Q ss_pred ccccCCCccCCC-ceEEcCCCceeChhhHHHhhhcCC----CCC
Q 018193 308 CCICLSSYEDGT-ELHALPCNHHFHSTCIVKWLKMNA----TCP 346 (359)
Q Consensus 308 C~ICL~~~~~~~-~lr~LpC~H~FH~~CId~WL~~~~----tCP 346 (359)
|+||.+ |.+++ .-+.|+|||.|..+||+++++.+. +||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 86544 457899999999999999998542 577
No 30
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.17 E-value=3.6e-07 Score=97.16 Aligned_cols=50 Identities=36% Similarity=0.973 Sum_probs=39.4
Q ss_pred cCCCCccccccCCCcc-CCCceEEcC------CCceeChhhHHHhhhcC--CCCCccccccc
Q 018193 301 LLPEDAECCICLSSYE-DGTELHALP------CNHHFHSTCIVKWLKMN--ATCPLCKYNIL 353 (359)
Q Consensus 301 ~~~~~~~C~ICL~~~~-~~~~lr~Lp------C~H~FH~~CId~WL~~~--~tCPlCR~~I~ 353 (359)
..+...||+||..-.. .+ |.|| |.|.||..|+.+|++.+ .+||+||..|+
T Consensus 1465 ~fsG~eECaICYsvL~~vd---r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVD---RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHh---ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3455679999998775 22 4554 78999999999999864 58999998875
No 31
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=8.2e-07 Score=83.00 Aligned_cols=51 Identities=31% Similarity=0.783 Sum_probs=43.1
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHH-hhhcCCC-CCcccccccCCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVK-WLKMNAT-CPLCKYNILKGN 356 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~-WL~~~~t-CPlCR~~I~~~~ 356 (359)
..|..|.||++..+.. ..+||||+|+..||-. |-+.+.. ||+||+.+..++
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 3467899999987776 7889999999999999 9877776 999998776543
No 32
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.4e-06 Score=88.11 Aligned_cols=49 Identities=29% Similarity=0.721 Sum_probs=40.0
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC-----CCCCcccccccCCC
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN-----ATCPLCKYNILKGN 356 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~-----~tCPlCR~~I~~~~ 356 (359)
+..|+|||+...-+ ..+.|||+||..||-+.+... ..||+|+..|..+|
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 78999999986665 445599999999999988654 37999999886643
No 33
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.06 E-value=2e-06 Score=66.14 Aligned_cols=48 Identities=23% Similarity=0.459 Sum_probs=38.7
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCcccccccC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNILK 354 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~ 354 (359)
+...|+||.+-+.++ ..+||||.|-..||.+|++. +.+||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 446799999999998 78899999999999999998 8899999988765
No 34
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=5.3e-06 Score=66.95 Aligned_cols=47 Identities=36% Similarity=0.767 Sum_probs=34.7
Q ss_pred CccccccCCCcc------------CCCceEEc--CCCceeChhhHHHhhhcCCCCCccccc
Q 018193 305 DAECCICLSSYE------------DGTELHAL--PCNHHFHSTCIVKWLKMNATCPLCKYN 351 (359)
Q Consensus 305 ~~~C~ICL~~~~------------~~~~lr~L--pC~H~FH~~CId~WL~~~~tCPlCR~~ 351 (359)
-+.|+||..-+- ..++...- -|+|-||..||.+||+.++.||||.++
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 356999874331 22333222 499999999999999999999999764
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.86 E-value=5.5e-06 Score=82.47 Aligned_cols=49 Identities=35% Similarity=0.980 Sum_probs=39.6
Q ss_pred CCCccccccCCCccCCC-ceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 303 PEDAECCICLSSYEDGT-ELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~-~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
-|-..|++||+.+.+.. .++...|+|-||..|+.+|- ..+||+||+-..
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 45578999999997654 45666799999999999994 568999998544
No 36
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.86 E-value=3e-06 Score=80.43 Aligned_cols=52 Identities=27% Similarity=0.802 Sum_probs=44.8
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhh-----------------------cCCCCCcccccccCCCC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-----------------------MNATCPLCKYNILKGNE 357 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~-----------------------~~~tCPlCR~~I~~~~~ 357 (359)
.+|.|||..|.++++..+++|.|.||..|+.+.|. ....||+||..|..+.+
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 57999999999999999999999999999998873 13369999999876554
No 37
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.81 E-value=2.9e-06 Score=88.99 Aligned_cols=49 Identities=27% Similarity=0.519 Sum_probs=44.4
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
..|++|+..+.++...-..+|+|.||..||+.|-+.-+|||+||..+.+
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 4699999999999888888899999999999999999999999986643
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=7.5e-06 Score=76.53 Aligned_cols=45 Identities=31% Similarity=0.839 Sum_probs=40.3
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKY 350 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~ 350 (359)
.+...|+||++.|.+. +.+||+|.|+..|+..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4567899999999998 89999999999999999885568999993
No 39
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.74 E-value=8.2e-06 Score=78.64 Aligned_cols=46 Identities=33% Similarity=0.784 Sum_probs=42.4
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
..|.||.+=|..+ ..+||+|-||.-||.+.|..+..||+|+.++.+
T Consensus 24 LRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 24 LRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 5699999999887 888999999999999999999999999988765
No 40
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=3.7e-05 Score=74.97 Aligned_cols=49 Identities=35% Similarity=0.718 Sum_probs=41.2
Q ss_pred CCCccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCcccccccC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
++..+|.|||++-.+- ..|||.|. .|..|-+.---.++.||+||++|..
T Consensus 288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 5578999999987765 89999996 6889998876678889999998854
No 41
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.54 E-value=3.6e-05 Score=72.91 Aligned_cols=45 Identities=29% Similarity=0.613 Sum_probs=40.6
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
..|-||-+-|..+ ..++|||-||.-||..-|..+.-||+||.+..
T Consensus 26 lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 26 LRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 4699999988877 77889999999999999999999999998754
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=3.5e-05 Score=75.82 Aligned_cols=50 Identities=34% Similarity=0.911 Sum_probs=38.7
Q ss_pred CCCccccccCCCccCCC----ceEEcC-CCceeChhhHHHhh--hc-----CCCCCcccccc
Q 018193 303 PEDAECCICLSSYEDGT----ELHALP-CNHHFHSTCIVKWL--KM-----NATCPLCKYNI 352 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~----~lr~Lp-C~H~FH~~CId~WL--~~-----~~tCPlCR~~I 352 (359)
..+.+|.||++..-+.. ....|| |+|.|+..||++|- ++ +..||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45689999999876543 123456 99999999999998 33 46799999754
No 43
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=1e-05 Score=78.55 Aligned_cols=51 Identities=31% Similarity=0.619 Sum_probs=42.1
Q ss_pred CCCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhc-CCCCCcccccccCCC
Q 018193 303 PEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKM-NATCPLCKYNILKGN 356 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~ 356 (359)
..+..|+|||+-+... +..+ |.|-||.+||.+-++. +++||.||+.+..+.
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 3457899999988765 5555 9999999999999976 669999999887653
No 44
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.29 E-value=6.1e-05 Score=73.93 Aligned_cols=46 Identities=37% Similarity=0.837 Sum_probs=39.5
Q ss_pred CccccccCCCcc-CCCceEEcCCCceeChhhHHHhhhcCC--CCCcccc
Q 018193 305 DAECCICLSSYE-DGTELHALPCNHHFHSTCIVKWLKMNA--TCPLCKY 350 (359)
Q Consensus 305 ~~~C~ICL~~~~-~~~~lr~LpC~H~FH~~CId~WL~~~~--tCPlCR~ 350 (359)
+.-|..|=+.|. .++.+-.|||.|+||..|+.+.|.++. +||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 346999999985 556788999999999999999998876 7999983
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.23 E-value=0.00012 Score=54.46 Aligned_cols=49 Identities=27% Similarity=0.624 Sum_probs=23.8
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCCCC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 358 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~ 358 (359)
..|++|.+-++++ +-.-.|.|.|++.||..-+. ..||+|+.+--..|-+
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS--
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHH
Confidence 4699999987766 23345999999999988544 4599999887555543
No 46
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00025 Score=71.18 Aligned_cols=49 Identities=29% Similarity=0.797 Sum_probs=43.6
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
..+.+|+||+..+.+. ..+||||.|+..||++=+.++..||+||.++.+
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccccc
Confidence 5678999999988877 677999999999999988888899999998874
No 47
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.06 E-value=0.00017 Score=61.55 Aligned_cols=36 Identities=19% Similarity=0.509 Sum_probs=32.0
Q ss_pred CCccccccCCCccCCCceEEcCCC------ceeChhhHHHhh
Q 018193 304 EDAECCICLSSYEDGTELHALPCN------HHFHSTCIVKWL 339 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~------H~FH~~CId~WL 339 (359)
...||.||++.+.+++.+..++|+ |.||.+|+.+|=
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 357899999999997788888887 999999999994
No 48
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00011 Score=52.81 Aligned_cols=46 Identities=26% Similarity=0.571 Sum_probs=32.7
Q ss_pred CccccccCCCccCCCceEEcCCCce-eChhhH-HHhhhcCCCCCccccccc
Q 018193 305 DAECCICLSSYEDGTELHALPCNHH-FHSTCI-VKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CI-d~WL~~~~tCPlCR~~I~ 353 (359)
++||.||++.-.+. ....|||. .+-+|- +.|-..+.+||+||++|.
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 47899999875554 33459996 345564 445447889999999874
No 49
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.95 E-value=0.00044 Score=76.82 Aligned_cols=52 Identities=31% Similarity=0.656 Sum_probs=43.2
Q ss_pred CCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC----------CCCCccccccc
Q 018193 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN----------ATCPLCKYNIL 353 (359)
Q Consensus 302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~----------~tCPlCR~~I~ 353 (359)
...|+.|-||+.+--......+|.|+|+||.+|...-|++. -.||+|+.+|.
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 34567899999988788888999999999999998777542 27999998874
No 50
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.89 E-value=0.0005 Score=69.23 Aligned_cols=52 Identities=27% Similarity=0.715 Sum_probs=44.1
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 356 (359)
.++..|+||.....++-.. +.|||.|+..|+.+|+..++.||.|+..+...+
T Consensus 19 ~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred cccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccchhh
Confidence 5567899999999988322 579999999999999999999999988776543
No 51
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.72 E-value=0.00055 Score=67.56 Aligned_cols=45 Identities=29% Similarity=0.853 Sum_probs=37.1
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhhc--CCCCCcccccccC
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--NATCPLCKYNILK 354 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~--~~tCPlCR~~I~~ 354 (359)
-|-||-+. +..++.=||||..|..|+..|-.. .++||.||.+|..
T Consensus 371 LCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 59999775 445678899999999999999743 6799999998753
No 52
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.00084 Score=58.75 Aligned_cols=38 Identities=34% Similarity=0.757 Sum_probs=33.5
Q ss_pred ccccccCCCCccccccCCCccCCCceEEcCCCceeChh
Q 018193 296 ANERILLPEDAECCICLSSYEDGTELHALPCNHHFHST 333 (359)
Q Consensus 296 ~~~~~~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~ 333 (359)
-+++++..+.-||.|||++++.++.+..|||-.+||+.
T Consensus 168 YNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK~ 205 (205)
T KOG0801|consen 168 YNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHKQ 205 (205)
T ss_pred cccchhcccCCcEEEEhhhccCCCceeccceEEEeecC
Confidence 35667777778999999999999999999999999974
No 53
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.48 E-value=0.0019 Score=45.42 Aligned_cols=40 Identities=33% Similarity=0.937 Sum_probs=27.8
Q ss_pred ccccCCCccCCCceEEcCCC-----ceeChhhHHHhhhc--CCCCCcc
Q 018193 308 CCICLSSYEDGTELHALPCN-----HHFHSTCIVKWLKM--NATCPLC 348 (359)
Q Consensus 308 C~ICL~~~~~~~~lr~LpC~-----H~FH~~CId~WL~~--~~tCPlC 348 (359)
|-||+++-++++ .-..||+ -..|.+|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999877665 3446764 48999999999974 4579988
No 54
>PHA02862 5L protein; Provisional
Probab=96.45 E-value=0.0017 Score=55.95 Aligned_cols=43 Identities=26% Similarity=0.675 Sum_probs=33.3
Q ss_pred ccccccCCCccCCCceEEcCCC-----ceeChhhHHHhhhcC--CCCCcccccc
Q 018193 306 AECCICLSSYEDGTELHALPCN-----HHFHSTCIVKWLKMN--ATCPLCKYNI 352 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~-----H~FH~~CId~WL~~~--~tCPlCR~~I 352 (359)
+.|=||.++-+++ .-||. ..-|.+|+.+|++.+ .+||+||.+.
T Consensus 3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 5799999985433 35754 789999999999754 4799999764
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.42 E-value=0.0018 Score=47.43 Aligned_cols=41 Identities=27% Similarity=0.734 Sum_probs=28.6
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhc--CCCCCc
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--NATCPL 347 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~--~~tCPl 347 (359)
+..|+|.+..|+++ ++...|+|.|-++.|.+|++. ...||.
T Consensus 11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 35799999998865 566789999999999999954 347998
No 56
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0025 Score=58.64 Aligned_cols=53 Identities=25% Similarity=0.580 Sum_probs=43.0
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc--------CCCCCcccccccCCCC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--------NATCPLCKYNILKGNE 357 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~--------~~tCPlCR~~I~~~~~ 357 (359)
.+..|..|-...+.+|.+| |-|-|.||.+|+++|--. .-.||.|-.+|++..+
T Consensus 49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred CCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 3456999999999888755 679999999999999743 2369999999987544
No 57
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.00088 Score=71.07 Aligned_cols=49 Identities=20% Similarity=0.586 Sum_probs=39.4
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-CCCcccccccCCC
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNILKGN 356 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~~ 356 (359)
-..|+.|-....+- ..+.|+|.||.+||.+-+...+ .||.|-.++...|
T Consensus 643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 35799999776664 4555999999999999997655 7999998887654
No 58
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.05 E-value=0.0044 Score=54.32 Aligned_cols=46 Identities=26% Similarity=0.712 Sum_probs=34.1
Q ss_pred CCCccccccCCCccCCCceEEcCCC--c---eeChhhHHHhhhcC--CCCCcccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCN--H---HFHSTCIVKWLKMN--ATCPLCKYNI 352 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~--H---~FH~~CId~WL~~~--~tCPlCR~~I 352 (359)
..+.+|=||.++.. ++ .-||. . .-|.+|+.+|+..+ .+||+|+++.
T Consensus 6 ~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 45678999998843 22 24754 4 67999999999764 4799998754
No 59
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.96 E-value=0.0039 Score=50.53 Aligned_cols=36 Identities=25% Similarity=0.756 Sum_probs=29.7
Q ss_pred cCCCCccccccCCCccCCCceEEcCCCceeChhhHHH
Q 018193 301 LLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVK 337 (359)
Q Consensus 301 ~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~ 337 (359)
...++..|++|-..+.. ......||||+||..|+++
T Consensus 74 ~i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred EECCCCCccCcCCcCCC-ceEEEeCCCeEEecccccC
Confidence 34556789999999977 5678889999999999863
No 60
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.0032 Score=62.64 Aligned_cols=47 Identities=28% Similarity=0.716 Sum_probs=39.1
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC--------CCCCccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN--------ATCPLCK 349 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~--------~tCPlCR 349 (359)
....+|+||+++.....-...|||+|+|++.|+...+.+. -.||-|+
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 3456899999998887889999999999999999999642 2688764
No 61
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.79 E-value=0.0043 Score=43.77 Aligned_cols=43 Identities=21% Similarity=0.595 Sum_probs=21.3
Q ss_pred ccccCCCccCCCceEEcC--CCceeChhhHHHhhh-cCCCCCccccc
Q 018193 308 CCICLSSYEDGTELHALP--CNHHFHSTCIVKWLK-MNATCPLCKYN 351 (359)
Q Consensus 308 C~ICL~~~~~~~~lr~Lp--C~H~FH~~CId~WL~-~~~tCPlCR~~ 351 (359)
|++|.+++... ....+| |++..+..|...-++ .++.||-||.+
T Consensus 1 cp~C~e~~d~~-d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDET-DKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CC-CTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccC-CCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 78999998332 234455 889999999777775 47799999975
No 62
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.60 E-value=0.0036 Score=56.55 Aligned_cols=42 Identities=29% Similarity=0.670 Sum_probs=37.7
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccc
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYN 351 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~ 351 (359)
.|.||-.+|+.+ ..+.|||+||..|.-+=++...+|-.|-+.
T Consensus 198 ~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 198 LCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred eehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 699999999987 677899999999999988888999999654
No 63
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.52 E-value=0.0053 Score=65.86 Aligned_cols=50 Identities=32% Similarity=0.765 Sum_probs=38.9
Q ss_pred cCCCCccccccCCCccCCCceEEc-CCCceeChhhHHHhhhcCC-------CCCcccc
Q 018193 301 LLPEDAECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLKMNA-------TCPLCKY 350 (359)
Q Consensus 301 ~~~~~~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~~~~-------tCPlCR~ 350 (359)
+..+..+|.||.+.+...+.+--- .|-|+||..||.+|-+... .||.|+.
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 445678999999999877665433 3889999999999986421 5999984
No 64
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.43 E-value=0.005 Score=62.94 Aligned_cols=48 Identities=31% Similarity=0.748 Sum_probs=38.1
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhh-----cCCCCCcccccccC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-----MNATCPLCKYNILK 354 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~-----~~~tCPlCR~~I~~ 354 (359)
+..+|.+|-+.-++. .+..|.|.||.-||.++.. .+.|||.|...+.-
T Consensus 535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 456899998875554 6778999999999998874 35699999877643
No 65
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.013 Score=57.54 Aligned_cols=44 Identities=27% Similarity=0.654 Sum_probs=33.0
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
-...|.||+++..+ ...+||||.-+ |..-- +...+||+||+.|.
T Consensus 304 ~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 34579999998776 48899999965 66554 33445999998774
No 66
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.00093 Score=65.80 Aligned_cols=51 Identities=25% Similarity=0.606 Sum_probs=45.6
Q ss_pred CccccccCCCccCC-CceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 305 DAECCICLSSYEDG-TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 305 ~~~C~ICL~~~~~~-~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
...|+||..+|..+ +.+..+-|||.+|.+||.+||.....||.|++.+...
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 35699999999888 7888899999999999999999988999999988653
No 67
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.024 Score=53.75 Aligned_cols=50 Identities=28% Similarity=0.438 Sum_probs=37.9
Q ss_pred CCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc--CCCCCccccccc
Q 018193 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--NATCPLCKYNIL 353 (359)
Q Consensus 302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~--~~tCPlCR~~I~ 353 (359)
...+.+|++|-+.=.. .-...+|+|+||-.||.+=+.- +-+||.|-.++.
T Consensus 236 ~t~~~~C~~Cg~~Pti--P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTI--PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCC--CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3567899999776332 3345569999999999987654 359999988765
No 68
>PHA03096 p28-like protein; Provisional
Probab=94.92 E-value=0.0096 Score=57.44 Aligned_cols=44 Identities=27% Similarity=0.514 Sum_probs=32.3
Q ss_pred ccccccCCCccCC----CceEEcC-CCceeChhhHHHhhhcCC---CCCccc
Q 018193 306 AECCICLSSYEDG----TELHALP-CNHHFHSTCIVKWLKMNA---TCPLCK 349 (359)
Q Consensus 306 ~~C~ICL~~~~~~----~~lr~Lp-C~H~FH~~CId~WL~~~~---tCPlCR 349 (359)
.+|.||++..... ..-..|+ |.|.|+..||..|-..+. +||.||
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 7899999987643 2334677 999999999999986432 455544
No 69
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.018 Score=55.12 Aligned_cols=44 Identities=23% Similarity=0.538 Sum_probs=39.2
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccc
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I 352 (359)
..|-||...|..+ ..+.|+|.|+..|--+=++....|++|-+.+
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccc
Confidence 3599999999988 7788999999999999889899999997754
No 70
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.056 Score=52.54 Aligned_cols=47 Identities=26% Similarity=0.585 Sum_probs=37.1
Q ss_pred ccCCCCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcCCCCCccc
Q 018193 300 ILLPEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPLCK 349 (359)
Q Consensus 300 ~~~~~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR 349 (359)
.+..+...|++|+.+-.++. .+. -|-+||-.||-+.++.++.||+=-
T Consensus 295 ~l~~~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~ 342 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTG 342 (357)
T ss_pred cCCCccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccC
Confidence 34456678999999976652 333 489999999999999999999843
No 71
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.54 E-value=0.039 Score=51.63 Aligned_cols=53 Identities=13% Similarity=0.262 Sum_probs=46.7
Q ss_pred CCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193 304 EDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 356 (359)
....|+||.+.+.+...+..|. |||+|..+|+++-++....||+|-.++-+.|
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 5578999999999998888775 9999999999999999999999988776544
No 72
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.032 Score=55.58 Aligned_cols=33 Identities=42% Similarity=0.946 Sum_probs=25.8
Q ss_pred CceEEcCCCceeChhhHHHhhhc--CCCCCccccc
Q 018193 319 TELHALPCNHHFHSTCIVKWLKM--NATCPLCKYN 351 (359)
Q Consensus 319 ~~lr~LpC~H~FH~~CId~WL~~--~~tCPlCR~~ 351 (359)
.-+..|.|+|.|-.+||++||.+ ...||.|+..
T Consensus 20 hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 20 HRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred eEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 34566779999999999999952 2369999754
No 73
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.74 E-value=0.042 Score=39.78 Aligned_cols=47 Identities=26% Similarity=0.574 Sum_probs=34.5
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCCC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNE 357 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 357 (359)
..|..|... +..-..+||+|+-...|.+- .+-+-||.|.+++..++.
T Consensus 8 ~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDDP 54 (55)
T ss_pred eeEEEcccc---ccccccccccceeeccccCh--hhccCCCCCCCcccCCCC
Confidence 345555544 23347899999999999765 567789999999877654
No 74
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.04 Score=53.95 Aligned_cols=48 Identities=29% Similarity=0.591 Sum_probs=41.3
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
.||..|+||...=-.. ...||+|.=|..||.+=|.+++.|=.||..+.
T Consensus 420 sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 5778899998763333 67799999999999999999999999998776
No 75
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=93.55 E-value=0.019 Score=55.72 Aligned_cols=49 Identities=33% Similarity=0.657 Sum_probs=39.2
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
.....|.+|-.=|.|... ..-|-|-||+.||-+.|..+.+||.|...|-
T Consensus 13 n~~itC~LC~GYliDATT--I~eCLHTFCkSCivk~l~~~~~CP~C~i~ih 61 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATT--ITECLHTFCKSCIVKYLEESKYCPTCDIVIH 61 (331)
T ss_pred ccceehhhccceeecchh--HHHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence 455789999776666632 2249999999999999999999999977554
No 76
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.36 E-value=0.033 Score=53.40 Aligned_cols=44 Identities=27% Similarity=0.656 Sum_probs=34.2
Q ss_pred ccccccCCCccCCCceEEcC-CCceeChhhHHHhhhc-CCCCCccc-ccc
Q 018193 306 AECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKM-NATCPLCK-YNI 352 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~-~~tCPlCR-~~I 352 (359)
..|+.|-.-..+. ..+| |+|.|+.+||..-|.. ...||.|. ++|
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdv 321 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDV 321 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccc
Confidence 5699998877666 5557 8999999999988754 55899994 444
No 77
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.29 E-value=0.069 Score=36.78 Aligned_cols=41 Identities=27% Similarity=0.734 Sum_probs=22.2
Q ss_pred ccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC--CCCcc
Q 018193 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA--TCPLC 348 (359)
Q Consensus 308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~--tCPlC 348 (359)
|.+|-+-.-.|+.-..-.|+=.+|..|++++++... +||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 456665555553322234888999999999998766 79988
No 78
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.22 E-value=0.14 Score=44.94 Aligned_cols=37 Identities=30% Similarity=0.600 Sum_probs=23.4
Q ss_pred CCccccccCCCccCCCceE---------EcCCC-ceeChhhHHHhhh
Q 018193 304 EDAECCICLSSYEDGTELH---------ALPCN-HHFHSTCIVKWLK 340 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr---------~LpC~-H~FH~~CId~WL~ 340 (359)
|+..|+|||+-=-+..-+. -.=|+ -.=|..|+|+.-+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 4678999998654442111 11154 4468999999864
No 79
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.14 E-value=0.054 Score=51.90 Aligned_cols=45 Identities=29% Similarity=0.584 Sum_probs=38.4
Q ss_pred ccccccCCCccCCC-ceEEcCCCceeChhhHHHhhhcCCCCCcccc
Q 018193 306 AECCICLSSYEDGT-ELHALPCNHHFHSTCIVKWLKMNATCPLCKY 350 (359)
Q Consensus 306 ~~C~ICL~~~~~~~-~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~ 350 (359)
..|+||.+.+-+.. .+..++|+|.-|..|...-...+-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34999998876655 4578899999999999999888899999988
No 80
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=91.62 E-value=0.12 Score=49.85 Aligned_cols=49 Identities=33% Similarity=0.744 Sum_probs=37.7
Q ss_pred CccccccCCCccCCCc-eEEcCCC-----ceeChhhHHHhhh--cCCCCCccccccc
Q 018193 305 DAECCICLSSYEDGTE-LHALPCN-----HHFHSTCIVKWLK--MNATCPLCKYNIL 353 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~-lr~LpC~-----H~FH~~CId~WL~--~~~tCPlCR~~I~ 353 (359)
+..|-||.++.+.... .-+.||. +..|..|+++|+. .+.+|..|+....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 5789999998765432 4566765 7889999999998 4557999987554
No 81
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=0.051 Score=52.03 Aligned_cols=43 Identities=26% Similarity=0.658 Sum_probs=31.3
Q ss_pred CccccccCCCccCCCceEEcCCCcee-ChhhHHHhhhcCCCCCcccccccC
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHF-HSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~F-H~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
+.-|.||++.- -....|+|||.- +.+|=. +-+.||+||+-|.+
T Consensus 300 ~~LC~ICmDaP---~DCvfLeCGHmVtCt~CGk----rm~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAP---RDCVFLECGHMVTCTKCGK----RMNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCC---cceEEeecCcEEeehhhcc----ccccCchHHHHHHH
Confidence 66799999874 445899999975 344532 23489999987754
No 82
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.78 E-value=0.14 Score=45.75 Aligned_cols=32 Identities=31% Similarity=0.869 Sum_probs=25.8
Q ss_pred EcCCCceeChhhHHHhhhc-----------CCCCCcccccccC
Q 018193 323 ALPCNHHFHSTCIVKWLKM-----------NATCPLCKYNILK 354 (359)
Q Consensus 323 ~LpC~H~FH~~CId~WL~~-----------~~tCPlCR~~I~~ 354 (359)
...||.-||.-|+..||+. -..||.|-.+|.-
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 4469999999999999963 2369999988853
No 83
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.40 E-value=0.2 Score=49.16 Aligned_cols=49 Identities=33% Similarity=0.653 Sum_probs=37.0
Q ss_pred ccCCCCccccccCCCccCCCceEEcCCCceeChhhHHH--hhhcCCCCCccccc
Q 018193 300 ILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVK--WLKMNATCPLCKYN 351 (359)
Q Consensus 300 ~~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~--WL~~~~tCPlCR~~ 351 (359)
...++...|.||-.... ..-.+||+|..+--|--+ -|.....||+||..
T Consensus 56 dtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 56 DTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 33455667999987753 347899999999999654 35668899999974
No 84
>PF04641 Rtf2: Rtf2 RING-finger
Probab=89.02 E-value=0.47 Score=45.20 Aligned_cols=51 Identities=18% Similarity=0.426 Sum_probs=40.6
Q ss_pred CCCccccccCCCccCCCceEEc-CCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 303 PEDAECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
.....|+|...+|........| ||||+|-..+|++- +....||+|-.++..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcccc
Confidence 4456899999999766665555 79999999999997 345689999887664
No 85
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.54 E-value=0.16 Score=55.02 Aligned_cols=42 Identities=21% Similarity=0.695 Sum_probs=32.4
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccc
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I 352 (359)
..|..|--..+-+ ..-.-|+|.||..|+. .....||-|+.+.
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 4799998876554 2344599999999999 5566899998744
No 86
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=88.49 E-value=0.19 Score=35.26 Aligned_cols=33 Identities=21% Similarity=0.597 Sum_probs=23.5
Q ss_pred EcCCC-ceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 323 ALPCN-HHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 323 ~LpC~-H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
...|+ |..+..|+..-|.++..||+|+.+++..
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 33586 9999999999999999999999998764
No 87
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.43 E-value=0.19 Score=54.62 Aligned_cols=38 Identities=24% Similarity=0.621 Sum_probs=29.9
Q ss_pred cCCCCccccccCCCccCCCceEEcCCCceeChhhHHHhh
Q 018193 301 LLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWL 339 (359)
Q Consensus 301 ~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL 339 (359)
..+.++.|.+|...+... .-..-||||.||.+||.+=.
T Consensus 813 v~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred EecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 335567899998887654 55777999999999998765
No 88
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=88.35 E-value=0.18 Score=54.28 Aligned_cols=45 Identities=31% Similarity=0.703 Sum_probs=36.1
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhc--CCCCCcccccccC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--NATCPLCKYNILK 354 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~--~~tCPlCR~~I~~ 354 (359)
..|.||++ .+.....+|+|.|+.+|+.+-+.. .+.||+||..+..
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 78999999 445577889999999999888754 3469999986643
No 89
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.84 E-value=0.23 Score=52.26 Aligned_cols=50 Identities=30% Similarity=0.797 Sum_probs=41.4
Q ss_pred ccCCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193 300 ILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356 (359)
Q Consensus 300 ~~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 356 (359)
...+...+|.||+.+. ..+..+|. |..|+.+|+..+..||+|+..+..++
T Consensus 474 ~l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 474 QLREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred hhhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 4445567899999998 45788899 99999999999999999988766544
No 90
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.26 E-value=0.22 Score=47.04 Aligned_cols=49 Identities=27% Similarity=0.786 Sum_probs=34.9
Q ss_pred CCccccccCCCccCCCce-EEcCC-----CceeChhhHHHhhhcCC--------CCCcccccc
Q 018193 304 EDAECCICLSSYEDGTEL-HALPC-----NHHFHSTCIVKWLKMNA--------TCPLCKYNI 352 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~l-r~LpC-----~H~FH~~CId~WL~~~~--------tCPlCR~~I 352 (359)
.+..|=||+..=+|+..- -.=|| +|..|..|+..|+..++ +||-|+.+-
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 345688999986665322 12365 39999999999995432 699998753
No 91
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=85.87 E-value=0.49 Score=46.11 Aligned_cols=45 Identities=24% Similarity=0.632 Sum_probs=35.6
Q ss_pred CCCccccccCCCccCCCceEEcCC--CceeChhhHHHhhhcCCCCCcccccccC
Q 018193 303 PEDAECCICLSSYEDGTELHALPC--NHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC--~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
.+-.+|+||.+.+..+ ...| ||.-+..|=. +.+..||.||.++.+
T Consensus 46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 3457899999998875 5567 5888888854 568899999998874
No 92
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=85.73 E-value=0.27 Score=47.63 Aligned_cols=44 Identities=25% Similarity=0.544 Sum_probs=29.8
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
-.|--|=-.+ .-.-|..||.|+||.+|-.. ...+.||+|-..|.
T Consensus 91 HfCd~Cd~PI--~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPI--AIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcc--eeeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 3455563333 23347889999999999654 34568999976654
No 93
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=84.48 E-value=0.23 Score=56.07 Aligned_cols=46 Identities=28% Similarity=0.596 Sum_probs=38.2
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccc
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I 352 (359)
...|.||++...... ...-|+|.+++.|...|+..+..||.|+...
T Consensus 1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 358999999887332 3456999999999999999999999998643
No 94
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=84.28 E-value=0.61 Score=46.47 Aligned_cols=28 Identities=25% Similarity=0.825 Sum_probs=20.8
Q ss_pred CCceeChhhHHHhhhc-------------CCCCCccccccc
Q 018193 326 CNHHFHSTCIVKWLKM-------------NATCPLCKYNIL 353 (359)
Q Consensus 326 C~H~FH~~CId~WL~~-------------~~tCPlCR~~I~ 353 (359)
|.-..|.+|+.+|+-. +.+||+||+.+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 3455678999999832 448999999764
No 95
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=84.14 E-value=0.62 Score=50.36 Aligned_cols=49 Identities=24% Similarity=0.796 Sum_probs=36.3
Q ss_pred CCCccccccCCCccCCCceEEcCCC-----ceeChhhHHHhhhcCC--CCCcccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCN-----HHFHSTCIVKWLKMNA--TCPLCKYNI 352 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~-----H~FH~~CId~WL~~~~--tCPlCR~~I 352 (359)
+++..|-||..+=..++++- =||. ...|.+|+-+|+.-++ .|-+|++++
T Consensus 10 ~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred ccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 34578999998755554432 2554 6789999999998665 599999865
No 96
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.34 E-value=0.25 Score=51.95 Aligned_cols=43 Identities=33% Similarity=0.635 Sum_probs=33.3
Q ss_pred ccccccCCCccCCC-ceEEcCCCceeChhhHHHhhhcCCCCCccccc
Q 018193 306 AECCICLSSYEDGT-ELHALPCNHHFHSTCIVKWLKMNATCPLCKYN 351 (359)
Q Consensus 306 ~~C~ICL~~~~~~~-~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~ 351 (359)
..|.||+..|.... +-+-|-|||.-|..|+.+ ..|++|| |+++
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCcc
Confidence 56999998887653 335556999999999987 5678999 7664
No 97
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.05 E-value=0.28 Score=52.38 Aligned_cols=49 Identities=35% Similarity=0.683 Sum_probs=39.7
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhc---CCCCCcccccccCCC
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM---NATCPLCKYNILKGN 356 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~---~~tCPlCR~~I~~~~ 356 (359)
..+|.||+..|.++ ..+.|.|.|...|+-.=|.. ...||+|+..+.+..
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s 72 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRS 72 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhh
Confidence 46899999999887 56779999999998876644 347999998876644
No 98
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.53 E-value=0.71 Score=49.61 Aligned_cols=25 Identities=28% Similarity=0.907 Sum_probs=22.6
Q ss_pred EcCCCceeChhhHHHhhhcCCCCCc
Q 018193 323 ALPCNHHFHSTCIVKWLKMNATCPL 347 (359)
Q Consensus 323 ~LpC~H~FH~~CId~WL~~~~tCPl 347 (359)
...|+|+-|..|...|+++...||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhcCCcCCC
Confidence 3459999999999999999999996
No 99
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=81.83 E-value=0.8 Score=44.91 Aligned_cols=53 Identities=19% Similarity=0.526 Sum_probs=34.9
Q ss_pred CCCccccccCCCccCCCc-eEEcCCCceeChhhHHHhh-hcCCCCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTE-LHALPCNHHFHSTCIVKWL-KMNATCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~-lr~LpC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~ 355 (359)
.+++-|+.|++.+.-.++ ..--|||...|.-|-..-- .-+..||-||+.-.++
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 344559999999876554 3334588777777733322 2367999999865443
No 100
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.65 E-value=1.2 Score=41.02 Aligned_cols=40 Identities=25% Similarity=0.603 Sum_probs=28.2
Q ss_pred ccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCcccccccC
Q 018193 308 CCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 308 C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
|-.|-+ .+..+-.|||.|+ ++..|=+. -.+||+|+.....
T Consensus 161 Cr~C~~---~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGE---REATVLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCc---CCceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence 666755 4666889999865 66678554 3459999986654
No 101
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.60 E-value=0.62 Score=44.78 Aligned_cols=28 Identities=25% Similarity=0.764 Sum_probs=21.7
Q ss_pred CCceeChhhHHHhh-------------hcCCCCCccccccc
Q 018193 326 CNHHFHSTCIVKWL-------------KMNATCPLCKYNIL 353 (359)
Q Consensus 326 C~H~FH~~CId~WL-------------~~~~tCPlCR~~I~ 353 (359)
|.-..|.+|+.+|+ +.+.+||+||+++.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 44667789999988 23668999999864
No 102
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=80.41 E-value=2.1 Score=30.99 Aligned_cols=43 Identities=26% Similarity=0.726 Sum_probs=33.2
Q ss_pred CccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcCCCCCc--cccc
Q 018193 305 DAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPL--CKYN 351 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPl--CR~~ 351 (359)
...|.+|-+.|.+++.+.+-| |+-.+|..|-++ ...|-. |..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 356999999999888888888 999999999544 555644 5443
No 103
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=79.71 E-value=0.83 Score=43.49 Aligned_cols=47 Identities=28% Similarity=0.592 Sum_probs=36.3
Q ss_pred CccccccCCCccCCCceEEc---C-CCceeChhhHHHhhh---------cCCCCCccccc
Q 018193 305 DAECCICLSSYEDGTELHAL---P-CNHHFHSTCIVKWLK---------MNATCPLCKYN 351 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~L---p-C~H~FH~~CId~WL~---------~~~tCPlCR~~ 351 (359)
..+|-+|.++|.+.++.+.. | |+-++|..|+..-+. ..+.||.|++-
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 36899999999766665554 2 999999999999543 24579999873
No 104
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=78.52 E-value=0.69 Score=48.78 Aligned_cols=41 Identities=24% Similarity=0.676 Sum_probs=26.8
Q ss_pred CccccccCC-----CccCCCceEEcCCCceeChhhHHHhhhcCCCCCcc
Q 018193 305 DAECCICLS-----SYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLC 348 (359)
Q Consensus 305 ~~~C~ICL~-----~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlC 348 (359)
...|.+|-. .|+.....+...|+++||..|... .+..||-|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 356778832 233333445566999999999443 45559999
No 105
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.40 E-value=0.76 Score=46.36 Aligned_cols=38 Identities=24% Similarity=0.683 Sum_probs=28.3
Q ss_pred CccccccCCCccCC-CceEEcCCCceeChhhHHHhhhcC
Q 018193 305 DAECCICLSSYEDG-TELHALPCNHHFHSTCIVKWLKMN 342 (359)
Q Consensus 305 ~~~C~ICL~~~~~~-~~lr~LpC~H~FH~~CId~WL~~~ 342 (359)
..+|.||..++..+ +....+.|+|.|+.+|+.+-+..+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 46799999554444 444456699999999999888643
No 106
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=73.11 E-value=3 Score=40.70 Aligned_cols=55 Identities=24% Similarity=0.542 Sum_probs=36.8
Q ss_pred cccCCCCccccccCCCcc--------------C-CC-ceEEcCCCceeChhhHHHhhhc---------CCCCCccccccc
Q 018193 299 RILLPEDAECCICLSSYE--------------D-GT-ELHALPCNHHFHSTCIVKWLKM---------NATCPLCKYNIL 353 (359)
Q Consensus 299 ~~~~~~~~~C~ICL~~~~--------------~-~~-~lr~LpC~H~FH~~CId~WL~~---------~~tCPlCR~~I~ 353 (359)
+.....+.+|++|+..=. | +- .-..-||||+--.+-+.-|-++ ++.||.|-+.+.
T Consensus 335 e~~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 335 ENTGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cccCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 334455678999996421 1 00 0113389999999999999875 457999977654
No 107
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=72.54 E-value=1.7 Score=40.85 Aligned_cols=47 Identities=26% Similarity=0.632 Sum_probs=34.7
Q ss_pred CCccccccCCCc-cCCC-ceEEcC-CCceeChhhHHHhhhcCC-CCC--cccc
Q 018193 304 EDAECCICLSSY-EDGT-ELHALP-CNHHFHSTCIVKWLKMNA-TCP--LCKY 350 (359)
Q Consensus 304 ~~~~C~ICL~~~-~~~~-~lr~Lp-C~H~FH~~CId~WL~~~~-tCP--lCR~ 350 (359)
+|..|+||-.+- -.++ .+-.-| |-|..|..|+|+-+.... .|| -|-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 456799999774 3333 334446 999999999999997754 799 6744
No 108
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.41 E-value=2.8 Score=42.00 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=40.2
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC---CCCccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA---TCPLCKYN 351 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~---tCPlCR~~ 351 (359)
..-..|+|=-+.=.+++....|.|||+-.++-+++-.+... .||.|=.+
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 34568999888888888899999999999999999776543 69999443
No 109
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=69.20 E-value=2.9 Score=45.38 Aligned_cols=51 Identities=10% Similarity=0.144 Sum_probs=36.1
Q ss_pred CCccccccCCCccC-CCceEEcC---CCceeChhhHHHhhhc------CCCCCcccccccC
Q 018193 304 EDAECCICLSSYED-GTELHALP---CNHHFHSTCIVKWLKM------NATCPLCKYNILK 354 (359)
Q Consensus 304 ~~~~C~ICL~~~~~-~~~lr~Lp---C~H~FH~~CId~WL~~------~~tCPlCR~~I~~ 354 (359)
+...|.||.-++.+ .+....+| |.|-||-.||..|... +-+|++|...|..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 33456666666554 33445666 9999999999999953 4479999987754
No 110
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.81 E-value=3.9 Score=39.27 Aligned_cols=32 Identities=28% Similarity=0.669 Sum_probs=26.7
Q ss_pred eEEcCCCceeChhhHHHhhhcCC-CCCcccccc
Q 018193 321 LHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNI 352 (359)
Q Consensus 321 lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I 352 (359)
.|.|.|||-|+..|+.+-+.... .||.||...
T Consensus 22 p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 22 PRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 37777999999999998876644 699999873
No 111
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=65.23 E-value=4.8 Score=36.92 Aligned_cols=41 Identities=32% Similarity=0.732 Sum_probs=27.9
Q ss_pred CccccccCCC-----ccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccc
Q 018193 305 DAECCICLSS-----YEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKY 350 (359)
Q Consensus 305 ~~~C~ICL~~-----~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~ 350 (359)
+..|-||-++ |+.+...+--.|+-+||..|..+ ..||-|.+
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 4578888753 33433444445999999999662 67999943
No 112
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=65.02 E-value=4.3 Score=34.84 Aligned_cols=49 Identities=27% Similarity=0.690 Sum_probs=34.9
Q ss_pred CCccccccCCCccCCCceEEc-C---CCceeChhhHH-Hhh--hcCCCCCcccccccCC
Q 018193 304 EDAECCICLSSYEDGTELHAL-P---CNHHFHSTCIV-KWL--KMNATCPLCKYNILKG 355 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~L-p---C~H~FH~~CId-~WL--~~~~tCPlCR~~I~~~ 355 (359)
.-.+|.||-+.-.+. +-| | ||-.-+..|-. -|= ..++.||.||...-..
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 347899999986665 445 3 88777777755 453 3567899999987553
No 113
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.83 E-value=3.1 Score=42.70 Aligned_cols=37 Identities=35% Similarity=0.811 Sum_probs=31.6
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM 341 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~ 341 (359)
..+.+|-||.+.+.. ++..+.|+|.|+..|....+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 456789999999887 6677789999999999999854
No 114
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.40 E-value=2.7 Score=45.57 Aligned_cols=45 Identities=22% Similarity=0.569 Sum_probs=33.3
Q ss_pred CCCccccccCCCccC-C---CceEEcCCCceeChhhHHHhhhcCCCCCcc
Q 018193 303 PEDAECCICLSSYED-G---TELHALPCNHHFHSTCIVKWLKMNATCPLC 348 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~-~---~~lr~LpC~H~FH~~CId~WL~~~~tCPlC 348 (359)
..+..|+-|.+.... + +.+..+-|+|.||+.|+..-..+++ |-.|
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 344579999887652 2 4567888999999999998877666 5444
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=63.43 E-value=5 Score=43.42 Aligned_cols=42 Identities=19% Similarity=0.487 Sum_probs=30.3
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCc
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPL 347 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPl 347 (359)
.+.|++|-..+..- .+..=-|+|.-|.+|+.+|+..+.-||.
T Consensus 779 ~~~CtVC~~vi~G~-~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGV-DVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceeeee-EeecccccccccHHHHHHHHhcCCCCcc
Confidence 45799996654321 1122139999999999999999888876
No 116
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.91 E-value=3.9 Score=41.32 Aligned_cols=46 Identities=24% Similarity=0.480 Sum_probs=36.3
Q ss_pred CCCccccccCCCccCCCceEEcC--CCceeChhhHHHhhhcCCCCCcc
Q 018193 303 PEDAECCICLSSYEDGTELHALP--CNHHFHSTCIVKWLKMNATCPLC 348 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~Lp--C~H~FH~~CId~WL~~~~tCPlC 348 (359)
..-.+|++|...++..+....+. |+|.|+-.|-..|...+.+|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 34467999998887766544443 89999999999999988888665
No 118
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=58.30 E-value=11 Score=23.80 Aligned_cols=37 Identities=19% Similarity=0.486 Sum_probs=24.2
Q ss_pred ccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
|..|-..+.+++.... .=+..||.+|. +|..|+..+.
T Consensus 2 C~~C~~~i~~~~~~~~-~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELVLR-ALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEEEE-eCCccccccCC--------CCcccCCcCc
Confidence 7778888777633222 23788998773 5777776653
No 119
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=56.61 E-value=4 Score=28.86 Aligned_cols=42 Identities=19% Similarity=0.468 Sum_probs=20.3
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-----CCCccccc
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-----TCPLCKYN 351 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-----tCPlCR~~ 351 (359)
.|+|....++- .+|-..|.|.-+. =++.||+.+. .||.|.++
T Consensus 4 ~CPls~~~i~~--P~Rg~~C~H~~CF-Dl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKNCKHLQCF-DLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEETT--SS--E-EHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe--CccCCcCcccceE-CHHHHHHHhhccCCeECcCCcCc
Confidence 58887777655 4677779886321 2446775433 59999864
No 120
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=56.02 E-value=7.6 Score=26.88 Aligned_cols=43 Identities=30% Similarity=0.672 Sum_probs=29.1
Q ss_pred ccccCCCccCCCceEEcCCCceeChhhHHHhhhc------CCCCCcccc
Q 018193 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM------NATCPLCKY 350 (359)
Q Consensus 308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~------~~tCPlCR~ 350 (359)
|.||-..-.+++.+.--.|+..||..|++.=... .-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 7889884444444444459999999999865431 236888863
No 121
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=55.55 E-value=5.2 Score=36.93 Aligned_cols=42 Identities=29% Similarity=0.749 Sum_probs=34.1
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcc
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLC 348 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlC 348 (359)
-..|.+|.+-.-.+ +|.=.||-.+|..|+.+.+++...||.|
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc 222 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHC 222 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCch
Confidence 46799998765544 2333588999999999999999999999
No 122
>PHA02898 virion envelope protein; Provisional
Probab=54.56 E-value=62 Score=25.82 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=28.0
Q ss_pred cccCCCC-Cccch-hhhhHhhhhHHHHHHHHHhHhhhhhc
Q 018193 95 ITINERP-STRIR-LWICGYALQCLVHVVLVWMEYRRRNT 132 (359)
Q Consensus 95 ls~~E~p-~~PL~-~Wi~gY~~~c~~~~~~~~~~yr~r~~ 132 (359)
+||+++| +++.| +=++.+.+|-++.+.++...-+.|+.
T Consensus 33 fSK~~~~~~~~wRalSii~FIlgivl~lG~~ifs~y~r~C 72 (92)
T PHA02898 33 LSKSEKPADSALRSISIISFILAIILILGIIFFKGYNMFC 72 (92)
T ss_pred hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4899999 77777 44788889999999886655444443
No 123
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=53.46 E-value=6.6 Score=28.95 Aligned_cols=16 Identities=38% Similarity=1.001 Sum_probs=12.6
Q ss_pred CCCCCcccccccCCCC
Q 018193 342 NATCPLCKYNILKGNE 357 (359)
Q Consensus 342 ~~tCPlCR~~I~~~~~ 357 (359)
..+||+|+.+..++..
T Consensus 39 ~p~CPlC~s~M~~~~r 54 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGTR 54 (59)
T ss_pred CccCCCcCCcccccee
Confidence 4589999998877654
No 124
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=53.05 E-value=55 Score=31.67 Aligned_cols=107 Identities=18% Similarity=0.317 Sum_probs=64.1
Q ss_pred HHHH-HHHhcCCCcccceehhHHHH-------HHHHHHHHhhhhhcc-cCCCCCccchhhhhHhhhhHHHHHHHHHhHhh
Q 018193 58 AREL-EERRADWGYSKPVVALDIMW-------NSAFVIVSAAMLIIT-INERPSTRIRLWICGYALQCLVHVVLVWMEYR 128 (359)
Q Consensus 58 ~~~~-~~r~~~w~~s~~~v~l~l~~-------nl~~iva~i~vL~ls-~~E~p~~PL~~Wi~gY~~~c~~~~~~~~~~yr 128 (359)
-+|. =.|-.||--+-|++.+.+-| +++.++++..+..++ ---....-..-| .=|++++++++..++.-+-
T Consensus 98 ~r~i~yaRYIdWllttPllll~l~lla~~~~~ti~~~v~ad~~~iv~~laaa~~~~tykW-~~y~ig~~a~lvvl~~l~~ 176 (285)
T COG5524 98 YRQIYYARYIDWLLTTPLLLLYLGLLAGTSLWTIAGVVAADIIMIVTGLAAALTHSTYKW-AYYAIGAAAFLVVLAVLVT 176 (285)
T ss_pred eehhhHHHHHHHHHhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhhchhhhH-HHHHHHHHHHHHHHHHHHh
Confidence 4455 78899999999999998865 444444332222221 000111111234 3489999998877765543
Q ss_pred hhh-cccCCCccCCCCCCCCCCCCCCCcccccccccccccchhhhhhHHHHHHHHHHHHhhceEEEee
Q 018193 129 RRN-TRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVS 195 (359)
Q Consensus 129 ~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~f~~vWfvvG~~wv~~ 195 (359)
... ..+.++ +.+.+-+.++.+++.+.|+..=.+|...
T Consensus 177 ~~~~~a~~~~------------------------------~~v~~~F~~l~~~~vvLWl~YPivW~ig 214 (285)
T COG5524 177 GFFAKAKTRG------------------------------TEVRSLFLTLRNYTVVLWLGYPIVWLIG 214 (285)
T ss_pred hhhhhhcccc------------------------------hHHHHHHHHHHHHHHHHHHhccceeEEc
Confidence 322 211111 2334456777889999999998999983
No 125
>COG3671 Predicted membrane protein [Function unknown]
Probab=51.45 E-value=73 Score=26.89 Aligned_cols=47 Identities=19% Similarity=0.505 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhc
Q 018193 206 RLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAG 252 (359)
Q Consensus 206 ~Ly~l~iv~La~~vff~If~~~L~~ll~Ialccclp~ii~~ly~~~~ 252 (359)
+.||+++.+..+++++..+.+.+..++...+=....+++...|...+
T Consensus 68 RTFw~~vl~~iIg~Llt~lgiGv~i~~AlgvW~i~Riv~G~~yl~~g 114 (125)
T COG3671 68 RTFWLAVLWWIIGLLLTFLGIGVVILVALGVWYIYRIVIGFKYLNEG 114 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46899988888888777776666666666555555666666665544
No 126
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=50.48 E-value=7.4 Score=24.20 Aligned_cols=16 Identities=31% Similarity=0.924 Sum_probs=9.0
Q ss_pred CCCcccccccCCCCCC
Q 018193 344 TCPLCKYNILKGNEQV 359 (359)
Q Consensus 344 tCPlCR~~I~~~~~~~ 359 (359)
+||.|...+.+.+++|
T Consensus 1 ~CP~C~s~l~~~~~ev 16 (28)
T PF03119_consen 1 TCPVCGSKLVREEGEV 16 (28)
T ss_dssp B-TTT--BEEE-CCTT
T ss_pred CcCCCCCEeEcCCCCE
Confidence 5999999998766653
No 127
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=49.96 E-value=9 Score=25.18 Aligned_cols=26 Identities=31% Similarity=0.643 Sum_probs=16.7
Q ss_pred ccccccCCCccCCCc--------eEEcCCCceeC
Q 018193 306 AECCICLSSYEDGTE--------LHALPCNHHFH 331 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~--------lr~LpC~H~FH 331 (359)
.+|+=|...|+-+++ ++--.|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 368888888874442 33334788875
No 128
>PF13239 2TM: 2TM domain
Probab=43.38 E-value=38 Score=26.16 Aligned_cols=60 Identities=23% Similarity=0.505 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCCcccceehhHHHHHHHHHHHHhhhhhcccCCCCCccchhh-hhHhhhhHHHHHHHHH
Q 018193 54 RETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW-ICGYALQCLVHVVLVW 124 (359)
Q Consensus 54 r~~~~~~~~~r~~~w~~s~~~v~l~l~~nl~~iva~i~vL~ls~~E~p~~PL~~W-i~gY~~~c~~~~~~~~ 124 (359)
++.|.+++++|..= |.+ -++++++.++...+-.-..|..+-.+| ++|++++.++|..-++
T Consensus 2 y~~A~~~v~~~k~f--y~H---------l~~y~ivn~~l~~in~~~~~~~~W~~~~~~~Wgi~L~~h~~~vf 62 (83)
T PF13239_consen 2 YERAKKRVKRRKGF--YRH---------LAVYLIVNSFLIFINLFTGPGYFWPLWPILGWGIGLAIHALKVF 62 (83)
T ss_pred hHHHHHHHHHHHHH--HHH---------HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 46677788777763 332 122333333333332223555444445 5788899888988876
No 129
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=42.92 E-value=17 Score=23.18 Aligned_cols=19 Identities=21% Similarity=0.600 Sum_probs=11.8
Q ss_pred CCceeChhhHHHhhhcCCCCCcccc
Q 018193 326 CNHHFHSTCIVKWLKMNATCPLCKY 350 (359)
Q Consensus 326 C~H~FH~~CId~WL~~~~tCPlCR~ 350 (359)
|||++-..- ....||.|..
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCEECCCc------CCCcCcCCCC
Confidence 566555432 3448999965
No 130
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=42.20 E-value=19 Score=39.10 Aligned_cols=48 Identities=31% Similarity=0.649 Sum_probs=32.3
Q ss_pred CCCCccccccCCCcc----CCCc-----eEEcC-CCceeChhhHHHhhhcCCCCCccccccc
Q 018193 302 LPEDAECCICLSSYE----DGTE-----LHALP-CNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 302 ~~~~~~C~ICL~~~~----~~~~-----lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
.+.+..|+-|-..|- .|.. .-.-| |.|.-|..=|.+ ..+||+|...+.
T Consensus 1128 ~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1128 DPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred CccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 345677888887774 2211 22224 999999887765 789999987653
No 131
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=40.51 E-value=20 Score=25.62 Aligned_cols=41 Identities=29% Similarity=0.758 Sum_probs=19.1
Q ss_pred ccccCCCccCCC------ceEEcC-CCceeChhhHHHhhhc-CCCCCccc
Q 018193 308 CCICLSSYEDGT------ELHALP-CNHHFHSTCIVKWLKM-NATCPLCK 349 (359)
Q Consensus 308 C~ICL~~~~~~~------~lr~Lp-C~H~FH~~CId~WL~~-~~tCPlCR 349 (359)
|--|+..|.++. ...+=| |+++|+.+| |..... =..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 444555555542 222334 999999999 444432 34799884
No 132
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=40.48 E-value=9.3 Score=38.51 Aligned_cols=45 Identities=24% Similarity=0.529 Sum_probs=0.0
Q ss_pred CCccccccCCCcc-----------CCCceEEcCCCceeChhhHHHhhhc------CCCCCccccc
Q 018193 304 EDAECCICLSSYE-----------DGTELHALPCNHHFHSTCIVKWLKM------NATCPLCKYN 351 (359)
Q Consensus 304 ~~~~C~ICL~~~~-----------~~~~lr~LpC~H~FH~~CId~WL~~------~~tCPlCR~~ 351 (359)
...+|++=|.... +.+.-..|.|||++- ...|-.. ..+||+||..
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG---~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHG---YHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -----------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceee---ecccccccccccccccCCCcccc
Confidence 3456777665443 334455678998765 3468642 3479999863
No 133
>PRK11827 hypothetical protein; Provisional
Probab=38.71 E-value=12 Score=27.66 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=14.6
Q ss_pred HHhhhcCCCCCcccccccCC
Q 018193 336 VKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 336 d~WL~~~~tCPlCR~~I~~~ 355 (359)
|+||..--.||.||.++..+
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 56777777788888887643
No 134
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=38.67 E-value=10 Score=38.20 Aligned_cols=49 Identities=22% Similarity=0.525 Sum_probs=0.0
Q ss_pred CccccccCCCcc--------------CCC--ceEEcCCCceeChhhHHHhhhc---------CCCCCccccccc
Q 018193 305 DAECCICLSSYE--------------DGT--ELHALPCNHHFHSTCIVKWLKM---------NATCPLCKYNIL 353 (359)
Q Consensus 305 ~~~C~ICL~~~~--------------~~~--~lr~LpC~H~FH~~CId~WL~~---------~~tCPlCR~~I~ 353 (359)
..+|++|+..-. |.. ...--||||+--.+...-|-+. ++.||.|-.++.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 678999996422 111 1123489999999999999865 357999977764
No 135
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=38.23 E-value=43 Score=31.57 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhhhhcccCCCCCccchhhhhHhhhhHHHHHHHHHhHhhhhhcc
Q 018193 79 IMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTR 133 (359)
Q Consensus 79 l~~nl~~iva~i~vL~ls~~E~p~~PL~~Wi~gY~~~c~~~~~~~~~~yr~r~~~ 133 (359)
++-++++++.+++||.. +-.|+-.-++..++-+.+++.+|-++|.+
T Consensus 119 lits~vsivga~vmLl~---------~e~~~g~~~l~~l~~~~~i~~~f~~~~~~ 164 (237)
T PF13748_consen 119 LITSVVSIVGAAVMLLV---------FEFWLGLACLLILALFLLILPRFARRNYR 164 (237)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999876 34899999999999999999999888865
No 136
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=38.16 E-value=31 Score=24.10 Aligned_cols=39 Identities=18% Similarity=0.450 Sum_probs=20.9
Q ss_pred ccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
|.-|-..+.+++.+ ...-+..||.+| -+|=.|+.+|..+
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEccc--------cccCCCCCccCCC
Confidence 45565665544332 123566677666 3466666665543
No 137
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.90 E-value=12 Score=26.64 Aligned_cols=14 Identities=29% Similarity=0.733 Sum_probs=7.1
Q ss_pred CCCCCcccccccCC
Q 018193 342 NATCPLCKYNILKG 355 (359)
Q Consensus 342 ~~tCPlCR~~I~~~ 355 (359)
++.||+|.+++.++
T Consensus 20 ~~~CPlC~r~l~~e 33 (54)
T PF04423_consen 20 KGCCPLCGRPLDEE 33 (54)
T ss_dssp SEE-TTT--EE-HH
T ss_pred CCcCCCCCCCCCHH
Confidence 33899999988653
No 138
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=37.64 E-value=24 Score=34.75 Aligned_cols=49 Identities=20% Similarity=0.468 Sum_probs=36.7
Q ss_pred ccccccCCCccCCCceEEcC--CCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 306 AECCICLSSYEDGTELHALP--CNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~Lp--C~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
..|+||-+.....+ .-.+| |+|.-|..|...=...+.+||.||.+...+
T Consensus 250 ~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 250 PSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCcccccc-cccccccccccchhhhhhcccccCCCCCccCCccccC
Confidence 57999998763322 24555 788888888888888899999999776543
No 139
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.14 E-value=30 Score=32.88 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=31.2
Q ss_pred ccCCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhh
Q 018193 300 ILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK 340 (359)
Q Consensus 300 ~~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~ 340 (359)
....+-+.|+.||..+.++ ...|=||+|..+||-+.+.
T Consensus 38 DsiK~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred cccCCcceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 3444556899999999998 7788899999999988763
No 140
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=35.14 E-value=25 Score=21.81 Aligned_cols=29 Identities=21% Similarity=0.553 Sum_probs=11.4
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhH
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCI 335 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CI 335 (359)
.|.+|-.....+...+-..|+-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47788887766455566679999999985
No 141
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=35.12 E-value=1.9e+02 Score=29.22 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=20.9
Q ss_pred hhHhhhhHHHHHHHHHhHhhhhhcccC
Q 018193 109 ICGYALQCLVHVVLVWMEYRRRNTRRV 135 (359)
Q Consensus 109 i~gY~~~c~~~~~~~~~~yr~r~~~~~ 135 (359)
+.+|.++.++.+.++++..|+|+++++
T Consensus 181 ~~~~~~~~v~~~~~v~~~~r~R~~r~~ 207 (394)
T COG4214 181 ILGWILGLVALAAIVFAGLRGRRRRIR 207 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457777788888899999888877543
No 142
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=34.70 E-value=8.1 Score=37.50 Aligned_cols=38 Identities=29% Similarity=0.572 Sum_probs=31.7
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA 343 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~ 343 (359)
.+|.+|+++|+.+.....+-|.-+||..|+-.|++...
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred eecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 38999999998766666776666999999999997654
No 143
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=33.35 E-value=7.2 Score=29.76 Aligned_cols=39 Identities=26% Similarity=0.455 Sum_probs=19.8
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccc
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I 352 (359)
..|+.|-.+++... +|.++..|-.. ++..+.||-|..++
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHH
Confidence 46888877655432 55556666443 45567889888766
No 144
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=33.19 E-value=73 Score=27.29 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=21.4
Q ss_pred ccchhhhhhHHHHHHHHHHHHhhceEE
Q 018193 166 TRTSFTKRCESINTMASFLWWIVGFYW 192 (359)
Q Consensus 166 ~~~~~~~~l~~~l~~f~~vWfvvG~~w 192 (359)
..+.+.+.+-++++.|+++||..+..|
T Consensus 78 qls~v~Nilvsv~~~~~~~~~~~~~~~ 104 (142)
T PF11712_consen 78 QLSTVFNILVSVFAVFFAGWYWAGYSF 104 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345778888888999999998887666
No 145
>PLN02189 cellulose synthase
Probab=30.52 E-value=46 Score=37.76 Aligned_cols=50 Identities=24% Similarity=0.428 Sum_probs=34.1
Q ss_pred CCccccccCCCcc---CCCceEEcC-CCceeChhhHHHhh-hcCCCCCccccccc
Q 018193 304 EDAECCICLSSYE---DGTELHALP-CNHHFHSTCIVKWL-KMNATCPLCKYNIL 353 (359)
Q Consensus 304 ~~~~C~ICL~~~~---~~~~lr~Lp-C~H~FH~~CId~WL-~~~~tCPlCR~~I~ 353 (359)
....|.||-++.. +|+.-..-. |+---|..|.+-=- .-++.||-||+.-.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3458999999985 444433333 66779999985322 34678999987543
No 146
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=29.86 E-value=1.3e+02 Score=28.40 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=18.4
Q ss_pred hhhhhhHHHHHHHHHHHHhhceE
Q 018193 169 SFTKRCESINTMASFLWWIVGFY 191 (359)
Q Consensus 169 ~~~~~l~~~l~~f~~vWfvvG~~ 191 (359)
+..+.+-.++.++.++||++-.+
T Consensus 36 r~~r~i~~~~l~i~~iw~v~llv 58 (232)
T PF10329_consen 36 RNLRWILNIFLAINFIWWVLLLV 58 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567777888899999998776
No 147
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.46 E-value=32 Score=33.33 Aligned_cols=35 Identities=29% Similarity=0.613 Sum_probs=27.8
Q ss_pred CccccccCCCccCCCceEEcCC----CceeChhhHHHhhhcC
Q 018193 305 DAECCICLSSYEDGTELHALPC----NHHFHSTCIVKWLKMN 342 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC----~H~FH~~CId~WL~~~ 342 (359)
-..|.+|.+.+||. ....| .|.||..|-.+-+|.+
T Consensus 268 pLcCTLC~ERLEDT---HFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 268 PLCCTLCHERLEDT---HFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred ceeehhhhhhhccC---ceeecCCCcccceecccCHHHHHhh
Confidence 35788999999986 33345 5999999999988764
No 148
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=29.39 E-value=48 Score=28.11 Aligned_cols=21 Identities=24% Similarity=0.640 Sum_probs=11.8
Q ss_pred HhcCCCcccceehhHHHHHHHHHHHHhhh
Q 018193 64 RRADWGYSKPVVALDIMWNSAFVIVSAAM 92 (359)
Q Consensus 64 r~~~w~~s~~~v~l~l~~nl~~iva~i~v 92 (359)
..+.|-|| +.-|+++|+.|.+
T Consensus 31 D~tpWNys--------iL~Ls~vvlvi~~ 51 (125)
T PF15048_consen 31 DATPWNYS--------ILALSFVVLVISF 51 (125)
T ss_pred CCCCcchH--------HHHHHHHHHHHHH
Confidence 34667777 5555555544443
No 149
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=29.33 E-value=70 Score=23.39 Aligned_cols=45 Identities=24% Similarity=0.591 Sum_probs=31.2
Q ss_pred cccccCCCccCCC-ceEEcCCC--ceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 307 ECCICLSSYEDGT-ELHALPCN--HHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 307 ~C~ICL~~~~~~~-~lr~LpC~--H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
.|-.|-.++..+. +-++ |+ .-|+.+|.+.-| +..||.|--++.+.
T Consensus 7 nCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 4666766766554 2222 43 569999999976 78899998777653
No 150
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=29.23 E-value=27 Score=23.63 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=16.3
Q ss_pred EEcCCCceeChhhHHHhhhcCCCCCcccc
Q 018193 322 HALPCNHHFHSTCIVKWLKMNATCPLCKY 350 (359)
Q Consensus 322 r~LpC~H~FH~~CId~WL~~~~tCPlCR~ 350 (359)
+-..|||.|-.--=-.= .....||.|..
T Consensus 7 ~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 7 RCEECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred EeCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 34468888875321100 23447999987
No 151
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.95 E-value=40 Score=32.09 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=35.7
Q ss_pred CCccccccCCCccCCCceEEc-CCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193 304 EDAECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 356 (359)
....|+|=--++......-.| +|||+|-..-+.+- ...+|++|.+..-..|
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 446799977777666554444 59999998776653 2568999988765443
No 152
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=28.95 E-value=27 Score=36.94 Aligned_cols=36 Identities=31% Similarity=0.567 Sum_probs=23.8
Q ss_pred CCCccccccCCCccC----CCce------EEcCCCceeChhhHHHh
Q 018193 303 PEDAECCICLSSYED----GTEL------HALPCNHHFHSTCIVKW 338 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~----~~~l------r~LpC~H~FH~~CId~W 338 (359)
+....|+||-++|++ .++. ..+.=|-+||..|+..=
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 344679999999972 1111 12225789999999764
No 153
>PRK05978 hypothetical protein; Provisional
Probab=28.85 E-value=31 Score=30.19 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=18.4
Q ss_pred ceeChhhHHHhhhcCCCCCcccccccC
Q 018193 328 HHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 328 H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
|.|+ .+|+.+.+||.|-.++..
T Consensus 43 ~LF~-----g~Lkv~~~C~~CG~~~~~ 64 (148)
T PRK05978 43 KLFR-----AFLKPVDHCAACGEDFTH 64 (148)
T ss_pred cccc-----cccccCCCccccCCcccc
Confidence 8887 799999999999776644
No 154
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=28.73 E-value=37 Score=22.29 Aligned_cols=26 Identities=19% Similarity=0.534 Sum_probs=16.3
Q ss_pred ccccccCCCccCCC--------ceEEcCCCceeC
Q 018193 306 AECCICLSSYEDGT--------ELHALPCNHHFH 331 (359)
Q Consensus 306 ~~C~ICL~~~~~~~--------~lr~LpC~H~FH 331 (359)
..|+=|-..|+-++ .++--.|+|.|+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 35888888886443 233334788886
No 155
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=28.27 E-value=29 Score=26.19 Aligned_cols=12 Identities=33% Similarity=1.054 Sum_probs=8.7
Q ss_pred eeChhhHHHhhh
Q 018193 329 HFHSTCIVKWLK 340 (359)
Q Consensus 329 ~FH~~CId~WL~ 340 (359)
-||..|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 156
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.80 E-value=1.4e+02 Score=29.97 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=18.5
Q ss_pred ccchhhhhHhhhhHHHHHHHHHhHhhhhhc
Q 018193 103 TRIRLWICGYALQCLVHVVLVWMEYRRRNT 132 (359)
Q Consensus 103 ~PL~~Wi~gY~~~c~~~~~~~~~~yr~r~~ 132 (359)
.|+..|++|..+ .++++.++++..|-++-
T Consensus 186 ~~~~~~vl~~~f-vl~tlaivLFPLWP~~m 214 (372)
T KOG2927|consen 186 RPLMWQVLGVLF-VLVTLAIVLFPLWPRRM 214 (372)
T ss_pred CchhHHHHHHHH-HHHHHHHHhcccCcHHH
Confidence 556667776665 56666666666665554
No 157
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=27.75 E-value=80 Score=36.10 Aligned_cols=50 Identities=26% Similarity=0.468 Sum_probs=33.0
Q ss_pred CCccccccCCCcc---CCCceEEcC-CCceeChhhHHH-hhhcCCCCCccccccc
Q 018193 304 EDAECCICLSSYE---DGTELHALP-CNHHFHSTCIVK-WLKMNATCPLCKYNIL 353 (359)
Q Consensus 304 ~~~~C~ICL~~~~---~~~~lr~Lp-C~H~FH~~CId~-WL~~~~tCPlCR~~I~ 353 (359)
+...|-||=++.. +|+.-..-. |+---|..|.+= .=.-++.||-||+.-.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4458999999985 444332222 555599999852 2234778999987543
No 158
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=26.91 E-value=84 Score=31.48 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCCcccceehhHHHHHHHHHHHHhhhhhcccCCCCCccc-hhhhhHhhhhH
Q 018193 55 ETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRI-RLWICGYALQC 116 (359)
Q Consensus 55 ~~~~~~~~~r~~~w~~s~~~v~l~l~~nl~~iva~i~vL~ls~~E~p~~PL-~~Wi~gY~~~c 116 (359)
.++|+++.||+. +|-...-++|++|.++..++++++.. || -.|+++=.++-
T Consensus 17 s~~~~~~~~~r~--~~p~~~~i~~~i~~i~K~i~~~I~f~---------Plgl~w~l~kicqn 68 (365)
T PF05677_consen 17 SEHARKAWERRK--AHPVLYKILDVIIRIFKFIIALIIFI---------PLGLLWVLQKICQN 68 (365)
T ss_pred hHHHHHHHHHHh--cCccHHHHHHHHHHHHHHHHHHHHhc---------cHHHHHHHHHHHHH
Confidence 578899988888 67888889999999999888887731 43 36766655443
No 159
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.72 E-value=11 Score=36.13 Aligned_cols=47 Identities=26% Similarity=0.594 Sum_probs=37.5
Q ss_pred CccccccCCCccCCC---ceEEcC--------CCceeChhhHHHhhhcCC-CCCccccc
Q 018193 305 DAECCICLSSYEDGT---ELHALP--------CNHHFHSTCIVKWLKMNA-TCPLCKYN 351 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~---~lr~Lp--------C~H~FH~~CId~WL~~~~-tCPlCR~~ 351 (359)
+..|.||...|+.++ ..+.+. |+|--+..|++.=+.... +||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 467999999998432 345666 999999999999986654 89999864
No 160
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=26.48 E-value=38 Score=24.90 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=18.3
Q ss_pred CccccccCCCccCCCceEEc-CCCceeChhhHHHhhh
Q 018193 305 DAECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLK 340 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~ 340 (359)
...|.+|..+|.--..-..= .||++|+..|......
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 46799999999643221222 3999999999987664
No 161
>PRK10633 hypothetical protein; Provisional
Probab=26.26 E-value=2.3e+02 Score=22.17 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHhhceEE
Q 018193 173 RCESINTMASFLWWIVGFYW 192 (359)
Q Consensus 173 ~l~~~l~~f~~vWfvvG~~w 192 (359)
+.-..++++.++||.+.-|.
T Consensus 13 ~~al~L~l~y~~~W~~~aY~ 32 (80)
T PRK10633 13 RWALGLTLLYLAAWLVAAYL 32 (80)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45677899999999998883
No 162
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.96 E-value=30 Score=35.50 Aligned_cols=39 Identities=21% Similarity=0.450 Sum_probs=29.5
Q ss_pred CCccccccCCCccCCCce-----EEcCCCceeChhhHHHhhhcC
Q 018193 304 EDAECCICLSSYEDGTEL-----HALPCNHHFHSTCIVKWLKMN 342 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~l-----r~LpC~H~FH~~CId~WL~~~ 342 (359)
+...|+.|...++.++.- ...+|+|.||.-|+..|-...
T Consensus 225 ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 225 NTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred cCccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 345599999999877632 222599999999999998763
No 163
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=25.88 E-value=1.7e+02 Score=21.72 Aligned_cols=44 Identities=27% Similarity=0.237 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhhhcccCCCCCc---cchhhhhHhhhhHHHHHHHHHh
Q 018193 82 NSAFVIVSAAMLIITINERPST---RIRLWICGYALQCLVHVVLVWM 125 (359)
Q Consensus 82 nl~~iva~i~vL~ls~~E~p~~---PL~~Wi~gY~~~c~~~~~~~~~ 125 (359)
.++.++++++++-....+++.. .-...++|+.+-.+..+.+++.
T Consensus 17 ~l~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
T PF02656_consen 17 ALALVGVGLALLRFFSLDHPSSSASRRVSKVLGLLLIVLGLLTLIYG 63 (73)
T ss_pred HHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666655444321 2335566766666555555543
No 164
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=25.70 E-value=1.3e+02 Score=26.75 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=35.6
Q ss_pred hhhhHHHHHHHHHHHHhhceEEEeeccccc---cccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018193 171 TKRCESINTMASFLWWIVGFYWVVSGGDLL---LQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIA 235 (359)
Q Consensus 171 ~~~l~~~l~~f~~vWfvvG~~wv~~~~~~~---~~~ap~Ly~l~iv~La~~vff~If~~~L~~ll~Ia 235 (359)
....++++.....+-.+-+++|-++..... ..+.| ++.++.++++-..++.+|.-++.++++++
T Consensus 72 ~sp~~iilglivvvlvi~~liwa~~~~a~~krmr~~hp-~~~l~gvllv~yfli~v~~~vlv~~F~il 138 (188)
T KOG4050|consen 72 ISPQDIILGLIVVVLVIGTLIWAASADANIKRMRTDHP-LVTLAGVLLVGYFLISVFGGVLVFAFAIL 138 (188)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666665555588988554432 22333 45566666555555566665555555543
No 165
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=25.17 E-value=47 Score=23.57 Aligned_cols=22 Identities=23% Similarity=0.819 Sum_probs=13.4
Q ss_pred CCceeChhhHHHhhhcCCCCCcc
Q 018193 326 CNHHFHSTCIVKWLKMNATCPLC 348 (359)
Q Consensus 326 C~H~FH~~CId~WL~~~~tCPlC 348 (359)
|+|.|... |..-......||.|
T Consensus 34 Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEcc-HhhhccCCCCCCCC
Confidence 66766554 23223567789988
No 166
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.02 E-value=19 Score=31.06 Aligned_cols=49 Identities=29% Similarity=0.613 Sum_probs=27.2
Q ss_pred CCCCccccccCC-CccCCCceEEcCCCceeChhhHHHhhhc-CC---CCCcccc
Q 018193 302 LPEDAECCICLS-SYEDGTELHALPCNHHFHSTCIVKWLKM-NA---TCPLCKY 350 (359)
Q Consensus 302 ~~~~~~C~ICL~-~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~---tCPlCR~ 350 (359)
..+|+.|.||+. +|.||-.-..--|.-.||..|-.+--.+ |. .|-+|+.
T Consensus 62 v~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRK 115 (169)
T ss_pred cCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcH
Confidence 367889999996 4666622112223334555555544333 33 4888864
No 167
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=24.79 E-value=5.3e+02 Score=24.53 Aligned_cols=61 Identities=11% Similarity=0.197 Sum_probs=46.7
Q ss_pred cceehhHHHHHHHHHHHHhhhhhcc-cCCCCCccchhhhhHhhhhHHHHHHHHHhHhhhhhc
Q 018193 72 KPVVALDIMWNSAFVIVSAAMLIIT-INERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNT 132 (359)
Q Consensus 72 ~~~v~l~l~~nl~~iva~i~vL~ls-~~E~p~~PL~~Wi~gY~~~c~~~~~~~~~~yr~r~~ 132 (359)
.|...+-.++.++..+..+.-+... ++-+--.|+.-|+.+..+-..+.+.+.+..|...|.
T Consensus 45 ~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih~~i~~vl~l~~~~~~~~~~~y~~~n~ 106 (295)
T PF06814_consen 45 YPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIHYLILAVLILKMLELAFWFIYYHYINK 106 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555666677777777666666654 455557889999999999999999999988888776
No 168
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=24.29 E-value=60 Score=19.97 Aligned_cols=17 Identities=41% Similarity=0.341 Sum_probs=13.7
Q ss_pred CCCchHHHHHHHHHHHH
Q 018193 46 GHGPSMLVRETAARELE 62 (359)
Q Consensus 46 ~~~~~~~~r~~~~~~~~ 62 (359)
+.+|+-.||++|++-|-
T Consensus 9 l~D~~~~VR~~a~~~l~ 25 (31)
T PF02985_consen 9 LNDPSPEVRQAAAECLG 25 (31)
T ss_dssp HT-SSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 47899999999998764
No 169
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=23.71 E-value=67 Score=26.97 Aligned_cols=48 Identities=21% Similarity=0.521 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCccchhhh-hHhhhhHHHHHHHHHhHhhh
Q 018193 80 MWNSAFVIVSAAMLIITINERPSTRIRLWI-CGYALQCLVHVVLVWMEYRR 129 (359)
Q Consensus 80 ~~nl~~iva~i~vL~ls~~E~p~~PL~~Wi-~gY~~~c~~~~~~~~~~yr~ 129 (359)
..+.+++.+++ +.+.-..-.|..|+.+.. +.-.+-|+-+..+++| ||+
T Consensus 36 ~vT~l~VLvti-i~afvf~~~~p~p~~iffavcI~l~~~s~~lLI~W-YR~ 84 (118)
T PF10856_consen 36 AVTSLFVLVTI-ISAFVFPQDPPKPLHIFFAVCILLICISAILLIFW-YRQ 84 (118)
T ss_pred HHHHHHHHHHH-hheEEecCCCCCceEEehHHHHHHHHHHHHhheee-hhc
Confidence 44555555533 233334445566666544 4445555555555554 665
No 170
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.54 E-value=90 Score=26.05 Aligned_cols=44 Identities=20% Similarity=0.387 Sum_probs=30.4
Q ss_pred ccccccCCCccCCC-----------ceEEcCCCceeChhhHHHhhhcCCCCCccc
Q 018193 306 AECCICLSSYEDGT-----------ELHALPCNHHFHSTCIVKWLKMNATCPLCK 349 (359)
Q Consensus 306 ~~C~ICL~~~~~~~-----------~lr~LpC~H~FH~~CId~WL~~~~tCPlCR 349 (359)
..|--|+..|.+.. ..+--.|+++|+.+|=--+-+.=..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 45888888886431 122334999999999655555666899996
No 171
>PF13061 DUF3923: Protein of unknown function (DUF3923)
Probab=23.32 E-value=1.4e+02 Score=22.51 Aligned_cols=50 Identities=14% Similarity=0.355 Sum_probs=35.3
Q ss_pred cceehhHHHHHHHHHHHHhhhhhcccC-----CCCCcc---chhhhhHhhhhHHHHHH
Q 018193 72 KPVVALDIMWNSAFVIVSAAMLIITIN-----ERPSTR---IRLWICGYALQCLVHVV 121 (359)
Q Consensus 72 ~~~v~l~l~~nl~~iva~i~vL~ls~~-----E~p~~P---L~~Wi~gY~~~c~~~~~ 121 (359)
|-|...-++|.+.|+..++.+..-+.| |.|+.. |-+|.+.|.+--+.++.
T Consensus 2 k~w~i~ni~~lilf~~~a~~I~~R~vDgaGv~qT~~~k~itl~vl~i~~~~i~i~q~I 59 (66)
T PF13061_consen 2 KFWWIFNIIWLILFLIVAIFIWLRKVDGAGVVQTPELKLITLAVLGIFFIIILIIQLI 59 (66)
T ss_pred eEEEehHHHHHHHHHHHHHHheeeeccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557778889999999999999988876 334332 55666666665554443
No 172
>PF15431 TMEM190: Transmembrane protein 190
Probab=23.27 E-value=96 Score=25.86 Aligned_cols=30 Identities=20% Similarity=0.562 Sum_probs=22.2
Q ss_pred CCCCCccch---hhhhHhhhhHHHHHHHHHhHh
Q 018193 98 NERPSTRIR---LWICGYALQCLVHVVLVWMEY 127 (359)
Q Consensus 98 ~E~p~~PL~---~Wi~gY~~~c~~~~~~~~~~y 127 (359)
+.+|+.-+| .|.+|++++-++.+.+...-|
T Consensus 49 hQRpDEnmrrKHmWaL~wtC~gll~Li~~iclF 81 (134)
T PF15431_consen 49 HQRPDENMRRKHMWALGWTCGGLLLLICSICLF 81 (134)
T ss_pred ccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456766655 899999999998887754333
No 173
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=22.90 E-value=1.9e+02 Score=27.76 Aligned_cols=52 Identities=27% Similarity=0.500 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHhhhhhcccCCCCCccchhhhhHhhhhHHHHHHHHHhHhhhhhcc
Q 018193 76 ALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTR 133 (359)
Q Consensus 76 ~l~l~~nl~~iva~i~vL~ls~~E~p~~PL~~Wi~gY~~~c~~~~~~~~~~yr~r~~~ 133 (359)
.+|.+|...+++++.+.+.+ .+..|-|-|++- .+..+..+-+-+.-||| ++.
T Consensus 42 ~VD~~Wg~~~~~~a~~~~l~----~~~~~~r~~l~~-~LvtlWs~RL~~hl~rR-~~~ 93 (272)
T COG3752 42 WVDAVWGGGFVAVAVVLALL----GEGDPRRRWLLL-FLVTLWSLRLGWHLYRR-TRG 93 (272)
T ss_pred eeehhccchHHHHHHHHHHH----cCCchHHHHHHH-HHHHHHHHHHHHHHHHh-hcC
Confidence 46999999999888777777 334456777664 34455555555544444 553
No 174
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=22.76 E-value=47 Score=20.28 Aligned_cols=14 Identities=29% Similarity=0.705 Sum_probs=7.2
Q ss_pred hhhcCCCCCccccc
Q 018193 338 WLKMNATCPLCKYN 351 (359)
Q Consensus 338 WL~~~~tCPlCR~~ 351 (359)
+-.....||.|-+.
T Consensus 10 V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 10 VPESAKFCPHCGYD 23 (26)
T ss_pred chhhcCcCCCCCCC
Confidence 33344456666544
No 175
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=22.51 E-value=59 Score=32.03 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=34.3
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC---CCCccc
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA---TCPLCK 349 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~---tCPlCR 349 (359)
.-..|++=-+.-.+......|.|||+.-.+-++.--+... .||.|-
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 3456887666666667778899999999999988655422 599994
No 176
>KOG3195 consensus Uncharacterized membrane protein NPD008/CGI-148 [General function prediction only]
Probab=22.45 E-value=1.7e+02 Score=26.76 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=27.8
Q ss_pred CcccceehhHHHHHHHHHHHHhhhhhcccCCCCCccchhhhhH-hhhhHHHHHHHHHhHhhh
Q 018193 69 GYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICG-YALQCLVHVVLVWMEYRR 129 (359)
Q Consensus 69 ~~s~~~v~l~l~~nl~~iva~i~vL~ls~~E~p~~PL~~Wi~g-Y~~~c~~~~~~~~~~yr~ 129 (359)
-|++|++. ..-|+|=+++|++-.+. .|..- +..+-+..+.++-.-||.
T Consensus 31 k~~hP~~~---fFHL~Fr~aAi~~Yil~----------~~f~nSFi~~fv~ivlLLs~DFW~ 79 (213)
T KOG3195|consen 31 KSSHPVAL---FFHLFFRGAAIVFYILC----------ELFSNSFITQFVVIVLLLSCDFWT 79 (213)
T ss_pred hccCchHH---HHHHHhhhHHHHHHHHH----------HHHHhhhHHHHHHHHHHHhhhhhe
Confidence 38888865 45667777777765553 12222 555555555555555554
No 177
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=22.15 E-value=30 Score=33.66 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHH
Q 018193 206 RLYWLAVVFLAFDVFFA 222 (359)
Q Consensus 206 ~Ly~l~iv~La~~vff~ 222 (359)
.+|.++++++++..++.
T Consensus 54 vl~sfAvvliiIIiIIm 70 (381)
T PF05297_consen 54 VLYSFAVVLIIIIIIIM 70 (381)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666655544433
No 178
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=21.78 E-value=72 Score=25.71 Aligned_cols=32 Identities=34% Similarity=0.688 Sum_probs=22.6
Q ss_pred CccccccCCCccCCCceEEcC--CCceeChhhHHHh
Q 018193 305 DAECCICLSSYEDGTELHALP--CNHHFHSTCIVKW 338 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~Lp--C~H~FH~~CId~W 338 (359)
...|.||... .|.-+.--. |...||..|..+.
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 4689999987 443333333 8889999998663
No 179
>PLN02436 cellulose synthase A
Probab=21.40 E-value=87 Score=35.79 Aligned_cols=50 Identities=28% Similarity=0.489 Sum_probs=33.7
Q ss_pred CCccccccCCCcc---CCCceEEcC-CCceeChhhHHHhh-hcCCCCCccccccc
Q 018193 304 EDAECCICLSSYE---DGTELHALP-CNHHFHSTCIVKWL-KMNATCPLCKYNIL 353 (359)
Q Consensus 304 ~~~~C~ICL~~~~---~~~~lr~Lp-C~H~FH~~CId~WL-~~~~tCPlCR~~I~ 353 (359)
....|.||-++.. +||.-..-. |+---|..|.+-=- .-++.||-||+.-.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3458999999974 555443333 66669999985322 23678999987543
No 180
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=20.72 E-value=7.4e+02 Score=23.58 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhhhhcc-cCCCCCccchhhhhHhhhhHHHHHHHHH
Q 018193 79 IMWNSAFVIVSAAMLIIT-INERPSTRIRLWICGYALQCLVHVVLVW 124 (359)
Q Consensus 79 l~~nl~~iva~i~vL~ls-~~E~p~~PL~~Wi~gY~~~c~~~~~~~~ 124 (359)
++|+.+.++..=.+--.- -.++|+.|-..|+---++.+++.....+
T Consensus 86 liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f 132 (254)
T PF07857_consen 86 LIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIF 132 (254)
T ss_pred HHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhe
Confidence 467777766443321110 1244555544544433444433333333
No 181
>PF01036 Bac_rhodopsin: Bacteriorhodopsin-like protein; InterPro: IPR001425 The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [, ]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). There are several classes of these bacterial proteins: they include bacteriorhodopsin and archaerhodopsin, which are light-driven proton pumps; halorhodopsin, a light-driven chloride pump; and sensory rhodopsin, which mediates both photoattractant (in the red) and photophobic (in the UV) responses.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 3QBI_B 3QBK_D 3QBL_D 3QBG_B 3AM6_D 1UAZ_B 1E12_A 2JAF_A 2JAG_A 3UG9_A ....
Probab=20.24 E-value=1e+02 Score=28.23 Aligned_cols=101 Identities=16% Similarity=0.354 Sum_probs=57.0
Q ss_pred HHHhcCCCcccceehhHHH-------HHHHH-HHHHhhhhhcc--cCCCCCccchhhhhHhhhhHHHHHHHHHhHhhhhh
Q 018193 62 EERRADWGYSKPVVALDIM-------WNSAF-VIVSAAMLIIT--INERPSTRIRLWICGYALQCLVHVVLVWMEYRRRN 131 (359)
Q Consensus 62 ~~r~~~w~~s~~~v~l~l~-------~nl~~-iva~i~vL~ls--~~E~p~~PL~~Wi~gY~~~c~~~~~~~~~~yr~r~ 131 (359)
--|-.||.-.-|++.+.+. ..+.. |++..+++... -.-.+. -.-| ..|+++|+..+.++|.-+..-+
T Consensus 71 ~~RYidW~lT~Plll~~L~~lag~~~~~~~~~i~~~~~mi~~g~~g~~~~~--~~kw-~~~~~~~~~~~~i~y~l~~~~~ 147 (222)
T PF01036_consen 71 WARYIDWLLTTPLLLLALALLAGASRRLLLFLIAADVVMIVTGLVGALVPG--TYKW-GWFLVSCAAFLYIVYLLFGPLR 147 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHTSH--HHHH-HHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhccc--HHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899988898776654 12222 22222222221 111111 1244 6778888888888876664433
Q ss_pred cccCCCccCCCCCCCCCCCCCCCcccccccccccccchhhhhhHHHHHHHHHHHHhhceEEEee
Q 018193 132 TRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVS 195 (359)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~f~~vWfvvG~~wv~~ 195 (359)
+...+. .... +....+..+..++|.+....|..+
T Consensus 148 ~~a~~~-----------------------------~~~~-~~~~~l~~~~~~~W~~YPi~w~l~ 181 (222)
T PF01036_consen 148 RAASAV-----------------------------SPSV-GLYNKLRNLTVVLWILYPIVWLLS 181 (222)
T ss_dssp HHHTTS-----------------------------THHH-HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhc-----------------------------CchH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 211000 0122 455556668888899999999984
Done!