Query 018193
Match_columns 359
No_of_seqs 299 out of 2175
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 11:23:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 8.1E-18 2.8E-22 133.6 6.0 78 251-354 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 8.1E-18 2.8E-22 128.4 4.1 53 303-355 21-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 5E-16 1.7E-20 111.1 5.2 51 303-353 3-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.6 2E-15 6.7E-20 113.1 6.3 54 302-355 11-64 (69)
5 2ep4_A Ring finger protein 24; 99.6 1.9E-15 6.5E-20 114.7 6.1 54 303-356 13-66 (74)
6 2ect_A Ring finger protein 126 99.6 2.1E-15 7.3E-20 115.6 6.2 54 303-356 13-66 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 6E-15 2E-19 114.5 4.5 51 304-354 14-76 (81)
8 2ecm_A Ring finger and CHY zin 99.5 1.5E-14 5.2E-19 103.2 4.9 50 304-353 4-54 (55)
9 3ng2_A RNF4, snurf, ring finge 99.5 1.6E-14 5.4E-19 108.4 3.3 54 303-356 8-65 (71)
10 2ea6_A Ring finger protein 4; 99.4 4.9E-14 1.7E-18 104.8 4.8 53 302-354 12-68 (69)
11 1v87_A Deltex protein 2; ring- 99.4 5.4E-14 1.8E-18 115.4 5.4 51 304-354 24-94 (114)
12 3dpl_R Ring-box protein 1; ubi 99.4 4.5E-14 1.5E-18 115.4 4.7 50 303-352 35-99 (106)
13 2xeu_A Ring finger protein 4; 99.4 3.6E-14 1.2E-18 104.1 3.1 53 304-356 2-58 (64)
14 2d8s_A Cellular modulator of i 99.4 8.9E-14 3.1E-18 107.9 5.3 53 302-355 12-71 (80)
15 2ecn_A Ring finger protein 141 99.4 9.4E-14 3.2E-18 104.1 3.7 51 303-357 13-63 (70)
16 1chc_A Equine herpes virus-1 r 99.4 2.3E-13 7.7E-18 101.3 4.6 50 303-354 3-52 (68)
17 2djb_A Polycomb group ring fin 99.4 4.6E-13 1.6E-17 101.1 5.6 51 303-356 13-64 (72)
18 2d8t_A Dactylidin, ring finger 99.4 2.7E-13 9.4E-18 102.1 4.2 49 303-354 13-61 (71)
19 2ct2_A Tripartite motif protei 99.3 9.8E-13 3.4E-17 102.5 5.5 54 302-355 12-69 (88)
20 2yur_A Retinoblastoma-binding 99.3 1.4E-12 4.7E-17 99.2 5.8 52 303-357 13-67 (74)
21 4a0k_B E3 ubiquitin-protein li 99.3 1.6E-13 5.3E-18 114.0 0.3 50 303-352 46-110 (117)
22 2csy_A Zinc finger protein 183 99.3 1.5E-12 5.3E-17 100.4 4.9 48 303-353 13-60 (81)
23 2ysl_A Tripartite motif-contai 99.3 2.5E-12 8.5E-17 96.9 5.7 51 303-356 18-71 (73)
24 2ecy_A TNF receptor-associated 99.3 2E-12 6.9E-17 95.8 4.2 51 303-356 13-64 (66)
25 2ct0_A Non-SMC element 1 homol 99.3 3.1E-12 1.1E-16 97.6 5.1 55 302-358 12-68 (74)
26 4ayc_A E3 ubiquitin-protein li 99.2 2E-12 6.9E-17 109.9 2.5 48 304-354 52-99 (138)
27 2ecv_A Tripartite motif-contai 99.2 7.6E-12 2.6E-16 96.4 5.4 50 303-355 17-72 (85)
28 2ecw_A Tripartite motif-contai 99.2 1E-11 3.4E-16 95.7 6.0 50 303-355 17-72 (85)
29 4ap4_A E3 ubiquitin ligase RNF 99.2 3.6E-12 1.2E-16 106.2 3.3 53 303-355 5-61 (133)
30 1t1h_A Gspef-atpub14, armadill 99.2 9.3E-12 3.2E-16 95.1 4.7 50 303-355 6-56 (78)
31 2ysj_A Tripartite motif-contai 99.2 2.3E-11 7.9E-16 89.1 6.1 44 302-348 17-63 (63)
32 3lrq_A E3 ubiquitin-protein li 99.2 4.3E-12 1.5E-16 102.1 2.0 50 303-355 20-71 (100)
33 2egp_A Tripartite motif-contai 99.2 4E-12 1.4E-16 97.1 1.7 50 303-355 10-66 (79)
34 3ztg_A E3 ubiquitin-protein li 99.2 1.8E-11 6.3E-16 96.4 5.2 50 301-353 9-61 (92)
35 2ecj_A Tripartite motif-contai 99.2 1.6E-11 5.4E-16 88.1 4.0 43 303-348 13-58 (58)
36 4ap4_A E3 ubiquitin ligase RNF 99.2 9E-12 3.1E-16 103.8 3.0 54 303-356 70-127 (133)
37 1g25_A CDK-activating kinase a 99.2 1.4E-11 4.9E-16 90.9 3.5 53 304-356 2-57 (65)
38 2y43_A E3 ubiquitin-protein li 99.2 7.9E-12 2.7E-16 100.0 2.3 48 304-354 21-69 (99)
39 2ckl_A Polycomb group ring fin 99.1 2.4E-11 8.4E-16 98.7 3.5 51 303-355 13-63 (108)
40 3fl2_A E3 ubiquitin-protein li 99.1 3.5E-11 1.2E-15 100.2 3.2 48 304-354 51-99 (124)
41 2ckl_B Ubiquitin ligase protei 99.1 5.2E-11 1.8E-15 104.0 3.6 49 304-354 53-102 (165)
42 3hct_A TNF receptor-associated 99.1 5.5E-11 1.9E-15 98.3 3.2 50 303-355 16-66 (118)
43 1jm7_A BRCA1, breast cancer ty 99.0 7.3E-11 2.5E-15 96.0 3.5 48 305-355 21-71 (112)
44 3l11_A E3 ubiquitin-protein li 99.0 4.1E-11 1.4E-15 98.4 0.8 48 303-353 13-61 (115)
45 1rmd_A RAG1; V(D)J recombinati 99.0 9.6E-11 3.3E-15 96.3 2.0 49 304-355 22-71 (116)
46 1z6u_A NP95-like ring finger p 99.0 1.6E-10 5.4E-15 99.8 2.9 49 304-355 77-126 (150)
47 1bor_A Transcription factor PM 98.9 2.3E-10 8E-15 82.2 2.5 49 303-357 4-52 (56)
48 2vje_A E3 ubiquitin-protein li 98.9 2.6E-10 9E-15 84.3 2.5 47 304-353 7-56 (64)
49 1e4u_A Transcriptional repress 98.9 8.9E-10 3E-14 84.8 4.2 53 303-356 9-64 (78)
50 2y1n_A E3 ubiquitin-protein li 98.9 8.9E-10 3E-14 108.4 4.5 47 305-354 332-379 (389)
51 3k1l_B Fancl; UBC, ring, RWD, 98.9 5.2E-10 1.8E-14 107.6 2.2 51 303-353 306-372 (381)
52 2kre_A Ubiquitin conjugation f 98.9 3E-09 1E-13 85.7 6.3 50 303-355 27-76 (100)
53 3knv_A TNF receptor-associated 98.9 5.9E-10 2E-14 95.2 2.2 48 303-353 29-77 (141)
54 2kr4_A Ubiquitin conjugation f 98.9 1.5E-09 5.2E-14 84.7 4.4 49 303-354 12-60 (85)
55 2vje_B MDM4 protein; proto-onc 98.8 7.9E-10 2.7E-14 81.5 2.3 48 305-353 7-55 (63)
56 1jm7_B BARD1, BRCA1-associated 98.8 7.3E-10 2.5E-14 91.3 2.3 48 303-355 20-68 (117)
57 1wgm_A Ubiquitin conjugation f 98.8 2.3E-09 7.9E-14 86.0 4.5 50 303-355 20-70 (98)
58 1vyx_A ORF K3, K3RING; zinc-bi 98.8 1.8E-09 6.2E-14 78.9 2.8 48 303-353 4-58 (60)
59 4ic3_A E3 ubiquitin-protein li 98.8 1.1E-09 3.7E-14 83.2 1.0 44 304-354 23-67 (74)
60 3hcs_A TNF receptor-associated 98.8 2.8E-09 9.5E-14 93.3 3.1 50 303-355 16-66 (170)
61 2ea5_A Cell growth regulator w 98.6 3.1E-08 1E-12 74.1 5.1 47 301-354 11-58 (68)
62 2c2l_A CHIP, carboxy terminus 98.6 2E-08 6.8E-13 93.6 4.4 49 303-354 206-255 (281)
63 2yu4_A E3 SUMO-protein ligase 98.6 1.7E-08 5.7E-13 80.1 2.6 46 303-351 5-59 (94)
64 2ecg_A Baculoviral IAP repeat- 98.5 2.5E-08 8.4E-13 75.7 2.4 45 304-355 24-69 (75)
65 1wim_A KIAA0161 protein; ring 98.5 3.7E-08 1.3E-12 77.9 2.8 48 304-351 4-61 (94)
66 2yho_A E3 ubiquitin-protein li 98.4 3.2E-08 1.1E-12 76.1 1.0 44 304-354 17-61 (79)
67 2f42_A STIP1 homology and U-bo 98.4 1.2E-07 4.3E-12 83.9 3.5 50 302-354 103-153 (179)
68 3t6p_A Baculoviral IAP repeat- 98.3 1.8E-07 6.1E-12 91.1 2.9 45 303-354 293-338 (345)
69 2bay_A PRE-mRNA splicing facto 98.3 1.9E-07 6.3E-12 68.3 2.1 47 306-355 4-51 (61)
70 3htk_C E3 SUMO-protein ligase 98.1 1.3E-06 4.3E-11 81.5 2.6 50 303-354 179-232 (267)
71 3nw0_A Non-structural maintena 97.9 8.2E-06 2.8E-10 75.4 4.0 52 304-357 179-232 (238)
72 3vk6_A E3 ubiquitin-protein li 97.7 1.9E-05 6.6E-10 62.8 3.2 45 308-354 4-49 (101)
73 2lri_C Autoimmune regulator; Z 94.4 0.048 1.6E-06 40.0 4.6 47 303-352 10-60 (66)
74 2jun_A Midline-1; B-BOX, TRIM, 94.1 0.033 1.1E-06 43.6 3.4 36 304-339 2-38 (101)
75 2ko5_A Ring finger protein Z; 94.0 0.023 7.9E-07 44.5 2.1 46 305-355 28-74 (99)
76 1we9_A PHD finger family prote 91.8 0.07 2.4E-06 38.5 2.0 49 303-351 4-58 (64)
77 2puy_A PHD finger protein 21A; 89.3 0.092 3.1E-06 37.5 0.6 52 304-358 4-59 (60)
78 1wil_A KIAA1045 protein; ring 89.3 0.25 8.5E-06 37.9 3.0 36 302-338 12-47 (89)
79 2k16_A Transcription initiatio 88.8 0.16 5.5E-06 37.7 1.7 53 304-356 17-73 (75)
80 2l5u_A Chromodomain-helicase-D 88.8 0.31 1E-05 34.9 3.1 46 303-351 9-58 (61)
81 1mm2_A MI2-beta; PHD, zinc fin 87.8 0.2 6.9E-06 35.9 1.6 50 303-355 7-60 (61)
82 1f62_A Transcription factor WS 86.4 0.44 1.5E-05 32.6 2.6 44 307-350 2-49 (51)
83 2ysm_A Myeloid/lymphoid or mix 85.7 0.48 1.6E-05 37.8 2.9 47 303-349 5-55 (111)
84 2yql_A PHD finger protein 21A; 83.9 0.3 1E-05 34.2 0.8 45 303-350 7-55 (56)
85 2kgg_A Histone demethylase jar 83.8 0.67 2.3E-05 31.9 2.6 43 307-349 4-52 (52)
86 2e6r_A Jumonji/ARID domain-con 83.7 0.32 1.1E-05 37.9 1.0 49 303-351 14-66 (92)
87 1xwh_A Autoimmune regulator; P 83.1 0.52 1.8E-05 34.2 1.9 46 303-351 6-55 (66)
88 2lv9_A Histone-lysine N-methyl 82.1 0.91 3.1E-05 35.6 3.1 46 305-350 27-75 (98)
89 1fp0_A KAP-1 corepressor; PHD 80.7 1.6 5.3E-05 33.8 3.9 47 302-351 22-72 (88)
90 1wep_A PHF8; structural genomi 80.5 1.6 5.4E-05 32.7 3.8 46 306-351 12-63 (79)
91 2l43_A N-teminal domain from h 80.3 0.61 2.1E-05 35.9 1.5 54 301-354 21-78 (88)
92 2vpb_A Hpygo1, pygopus homolog 79.3 1.3 4.6E-05 32.0 3.0 35 303-337 6-42 (65)
93 1wem_A Death associated transc 78.9 1.1 3.8E-05 33.2 2.5 46 306-351 16-70 (76)
94 1wee_A PHD finger family prote 76.5 0.94 3.2E-05 33.3 1.5 46 305-351 16-66 (72)
95 3o70_A PHD finger protein 13; 74.0 1.3 4.3E-05 32.4 1.6 46 304-350 18-66 (68)
96 1wen_A Inhibitor of growth fam 73.7 2.8 9.7E-05 30.8 3.4 45 305-353 16-67 (71)
97 2e6s_A E3 ubiquitin-protein li 73.5 1.2 4.2E-05 33.4 1.4 44 307-350 28-76 (77)
98 1weu_A Inhibitor of growth fam 73.3 2.5 8.6E-05 32.7 3.2 45 305-352 35-86 (91)
99 3m62_A Ubiquitin conjugation f 72.6 1.9 6.5E-05 46.8 3.2 50 302-354 888-938 (968)
100 1wew_A DNA-binding family prot 72.5 2.2 7.4E-05 31.9 2.6 47 305-352 16-73 (78)
101 3v43_A Histone acetyltransfera 71.9 1.9 6.6E-05 34.4 2.4 46 305-350 61-111 (112)
102 1wev_A Riken cDNA 1110020M19; 71.2 0.68 2.3E-05 35.6 -0.5 50 304-353 15-74 (88)
103 3v43_A Histone acetyltransfera 69.9 6.1 0.00021 31.4 4.9 34 304-337 4-43 (112)
104 2xb1_A Pygopus homolog 2, B-ce 69.1 3.4 0.00012 32.7 3.2 47 305-351 3-61 (105)
105 2yt5_A Metal-response element- 68.8 2.1 7.3E-05 30.6 1.8 50 303-352 4-62 (66)
106 2ri7_A Nucleosome-remodeling f 68.8 1.3 4.4E-05 37.9 0.7 46 304-350 7-58 (174)
107 2ku3_A Bromodomain-containing 67.4 1.7 5.7E-05 32.1 1.0 49 303-351 14-66 (71)
108 3asl_A E3 ubiquitin-protein li 66.5 1.7 5.7E-05 31.9 0.8 43 307-350 20-68 (70)
109 2rsd_A E3 SUMO-protein ligase 66.2 1.4 4.7E-05 32.1 0.3 45 306-350 10-64 (68)
110 3shb_A E3 ubiquitin-protein li 64.9 1.9 6.6E-05 32.3 0.9 44 307-350 28-76 (77)
111 3c6w_A P28ING5, inhibitor of g 64.8 1.6 5.4E-05 30.9 0.4 42 306-350 9-57 (59)
112 3ask_A E3 ubiquitin-protein li 64.7 2.6 8.8E-05 38.2 1.8 44 307-350 176-224 (226)
113 2vnf_A ING 4, P29ING4, inhibit 62.8 1.8 6E-05 30.8 0.3 42 306-350 10-58 (60)
114 2kwj_A Zinc finger protein DPF 61.9 3.9 0.00013 32.7 2.3 34 306-339 2-42 (114)
115 3o7a_A PHD finger protein 13 v 60.1 3.3 0.00011 28.3 1.3 44 307-350 5-51 (52)
116 4gne_A Histone-lysine N-methyl 56.9 12 0.00042 29.7 4.3 44 303-352 13-63 (107)
117 2g6q_A Inhibitor of growth pro 56.1 2.8 9.6E-05 30.0 0.4 42 306-350 11-59 (62)
118 1iml_A CRIP, cysteine rich int 53.9 8.4 0.00029 27.7 2.8 44 302-349 24-68 (76)
119 2co8_A NEDD9 interacting prote 53.3 13 0.00044 27.4 3.8 41 304-354 14-54 (82)
120 2dj7_A Actin-binding LIM prote 51.8 22 0.00074 26.0 4.8 40 304-353 14-53 (80)
121 2cu8_A Cysteine-rich protein 2 51.8 18 0.00062 25.9 4.3 40 305-354 9-48 (76)
122 3kqi_A GRC5, PHD finger protei 51.7 5 0.00017 29.5 1.2 48 304-351 8-61 (75)
123 3ql9_A Transcriptional regulat 49.4 14 0.00047 30.4 3.6 46 303-351 55-111 (129)
124 2kwj_A Zinc finger protein DPF 48.9 2.9 9.9E-05 33.5 -0.6 47 307-353 60-110 (114)
125 2ysm_A Myeloid/lymphoid or mix 48.4 4.5 0.00015 32.0 0.5 46 306-351 55-104 (111)
126 2pk7_A Uncharacterized protein 46.0 6.8 0.00023 28.7 1.1 20 335-354 1-20 (69)
127 2lbm_A Transcriptional regulat 44.6 21 0.00071 29.8 4.0 46 303-351 61-117 (142)
128 1weo_A Cellulose synthase, cat 44.1 29 0.001 26.7 4.4 50 304-353 15-69 (93)
129 1z2q_A LM5-1; membrane protein 43.8 30 0.001 25.8 4.5 50 304-353 20-78 (84)
130 2d8v_A Zinc finger FYVE domain 43.8 23 0.00077 25.7 3.5 31 303-337 6-37 (67)
131 2jny_A Uncharacterized BCR; st 42.7 5.7 0.0002 29.0 0.2 18 336-353 4-21 (67)
132 1x4i_A Inhibitor of growth pro 42.0 8.5 0.00029 28.1 1.1 44 306-352 6-56 (70)
133 2gmg_A Hypothetical protein PF 39.1 9.6 0.00033 30.2 1.1 24 325-353 72-95 (105)
134 3f6q_B LIM and senescent cell 38.8 25 0.00085 24.5 3.2 42 305-355 11-52 (72)
135 3i2d_A E3 SUMO-protein ligase 38.8 18 0.00061 35.0 3.1 46 306-354 250-300 (371)
136 1x62_A C-terminal LIM domain p 37.5 34 0.0011 24.7 3.9 39 304-353 14-52 (79)
137 4fo9_A E3 SUMO-protein ligase 37.3 20 0.00068 34.6 3.1 47 306-355 216-267 (360)
138 3mjh_B Early endosome antigen 36.9 3.1 0.00011 26.3 -1.7 15 305-319 5-19 (34)
139 2ks1_B Epidermal growth factor 36.0 58 0.002 21.6 4.4 18 115-132 22-39 (44)
140 1x4l_A Skeletal muscle LIM-pro 35.6 32 0.0011 24.2 3.4 39 306-353 6-46 (72)
141 1zbd_B Rabphilin-3A; G protein 34.8 21 0.00072 29.4 2.5 33 304-336 54-88 (134)
142 1x64_A Alpha-actinin-2 associa 34.3 87 0.003 22.9 5.9 41 304-355 24-64 (89)
143 2jmi_A Protein YNG1, ING1 homo 34.1 12 0.0004 28.8 0.8 41 307-350 27-75 (90)
144 2d8x_A Protein pinch; LIM doma 34.0 31 0.001 24.1 3.0 38 306-354 6-43 (70)
145 1x61_A Thyroid receptor intera 33.9 57 0.002 22.7 4.6 38 306-352 6-43 (72)
146 1wyh_A SLIM 2, skeletal muscle 33.8 36 0.0012 23.8 3.4 40 306-354 6-45 (72)
147 1vfy_A Phosphatidylinositol-3- 32.5 36 0.0012 24.6 3.3 34 306-339 12-46 (73)
148 1a7i_A QCRP2 (LIM1); LIM domai 32.5 20 0.00067 26.0 1.8 39 306-354 8-46 (81)
149 2d8y_A Eplin protein; LIM doma 32.2 63 0.0022 23.8 4.7 40 305-354 15-54 (91)
150 1x63_A Skeletal muscle LIM-pro 31.9 49 0.0017 23.7 4.0 41 306-355 16-56 (82)
151 1v6g_A Actin binding LIM prote 31.8 44 0.0015 24.0 3.7 38 306-354 16-53 (81)
152 1x4k_A Skeletal muscle LIM-pro 31.6 47 0.0016 23.1 3.8 40 306-354 6-45 (72)
153 1dvp_A HRS, hepatocyte growth 31.4 28 0.00097 30.6 3.0 35 305-339 161-196 (220)
154 1z60_A TFIIH basal transcripti 31.4 21 0.0007 25.3 1.6 42 306-348 16-58 (59)
155 3kv5_D JMJC domain-containing 31.3 13 0.00045 37.3 0.8 48 304-351 35-88 (488)
156 2jr6_A UPF0434 protein NMA0874 31.2 7.2 0.00025 28.5 -0.8 15 338-352 4-18 (68)
157 1wfk_A Zinc finger, FYVE domai 31.0 40 0.0014 25.4 3.4 36 304-339 8-44 (88)
158 1g47_A Pinch protein; LIM doma 30.8 52 0.0018 23.2 3.9 41 305-354 11-51 (77)
159 2kpi_A Uncharacterized protein 30.7 7.9 0.00027 27.1 -0.7 20 335-354 3-22 (56)
160 1x6a_A LIMK-2, LIM domain kina 30.4 28 0.00096 25.1 2.4 37 307-354 17-53 (81)
161 2yw8_A RUN and FYVE domain-con 29.4 45 0.0015 24.7 3.4 35 305-339 19-54 (82)
162 2dar_A PDZ and LIM domain prot 28.7 61 0.0021 23.9 4.1 39 305-354 25-63 (90)
163 2jvx_A NF-kappa-B essential mo 28.2 13 0.00046 22.3 0.2 13 342-354 3-15 (28)
164 2hf1_A Tetraacyldisaccharide-1 28.2 7.2 0.00025 28.5 -1.3 15 338-352 4-18 (68)
165 2js4_A UPF0434 protein BB2007; 28.1 7.8 0.00027 28.4 -1.1 14 339-352 5-18 (70)
166 3t7l_A Zinc finger FYVE domain 28.0 38 0.0013 25.6 2.8 35 305-339 20-55 (90)
167 2kdx_A HYPA, hydrogenase/ureas 27.4 31 0.001 27.5 2.3 26 320-351 73-99 (119)
168 3zyq_A Hepatocyte growth facto 27.4 37 0.0013 30.2 3.0 49 305-353 164-221 (226)
169 2l3k_A Rhombotin-2, linker, LI 26.8 35 0.0012 27.0 2.5 39 300-339 31-69 (123)
170 1joc_A EEA1, early endosomal a 26.8 39 0.0013 27.3 2.8 34 306-339 70-104 (125)
171 1wd2_A Ariadne-1 protein homol 26.7 20 0.00069 25.2 0.9 38 305-342 6-48 (60)
172 2d8z_A Four and A half LIM dom 26.6 80 0.0027 21.8 4.2 37 306-353 6-42 (70)
173 1x4u_A Zinc finger, FYVE domai 26.6 54 0.0019 24.3 3.4 35 305-339 14-49 (84)
174 2rgt_A Fusion of LIM/homeobox 26.3 41 0.0014 28.1 3.0 39 307-354 67-105 (169)
175 2l2t_A Receptor tyrosine-prote 26.1 94 0.0032 20.6 4.1 17 117-133 23-39 (44)
176 2cs3_A Protein C14ORF4, MY039 25.6 1.5E+02 0.0052 22.3 5.6 37 304-341 14-52 (93)
177 2lcq_A Putative toxin VAPC6; P 25.2 33 0.0011 28.6 2.2 28 322-355 134-161 (165)
178 1wig_A KIAA1808 protein; LIM d 24.4 54 0.0018 23.2 2.9 9 308-316 8-16 (73)
179 4bbq_A Lysine-specific demethy 24.3 11 0.00038 29.8 -0.9 43 308-350 62-113 (117)
180 1x68_A FHL5 protein; four-and- 24.1 69 0.0023 22.7 3.5 39 306-353 6-46 (76)
181 2zet_C Melanophilin; complex, 23.3 39 0.0013 28.4 2.3 46 304-350 67-116 (153)
182 2l4z_A DNA endonuclease RBBP8, 22.9 53 0.0018 26.1 2.9 39 305-353 61-99 (123)
183 2o35_A Hypothetical protein DU 22.8 27 0.00092 27.4 1.0 12 330-341 43-54 (105)
184 2cur_A Skeletal muscle LIM-pro 22.5 75 0.0026 21.9 3.4 37 306-353 6-42 (69)
185 3fyb_A Protein of unknown func 22.5 28 0.00094 27.3 1.0 11 330-340 42-52 (104)
186 1y02_A CARP2, FYVE-ring finger 22.4 19 0.00065 29.1 0.1 44 306-349 20-64 (120)
187 1nyp_A Pinch protein; LIM doma 22.1 59 0.002 22.2 2.7 38 306-354 6-43 (66)
188 2cor_A Pinch protein; LIM doma 21.9 83 0.0028 22.6 3.6 39 305-354 15-53 (79)
189 2a20_A Regulating synaptic mem 21.8 16 0.00053 26.0 -0.5 48 303-350 7-59 (62)
190 1rut_X Flinc4, fusion protein 21.2 64 0.0022 27.4 3.3 40 307-355 71-110 (188)
191 2egq_A FHL1 protein; LIM domai 21.0 83 0.0028 22.1 3.4 39 306-354 16-58 (77)
192 1fjk_A Cardiac phospholamban; 20.7 81 0.0028 21.0 2.8 14 221-234 32-45 (52)
193 2jtn_A LIM domain-binding prot 20.4 47 0.0016 28.1 2.2 38 307-353 121-158 (182)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.71 E-value=8.1e-18 Score=133.57 Aligned_cols=78 Identities=29% Similarity=0.680 Sum_probs=66.2
Q ss_pred hcCCCCCHHHhhcCCCceeeeccCcccccCCCCcccccccCCCccccccccCCCCccccccCCCccCCCceEEcCCCcee
Q 018193 251 AGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHF 330 (359)
Q Consensus 251 ~~~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~lr~LpC~H~F 330 (359)
....|++++.++.||.+.+...... ..++.+|+||+++|.+++.++.|||+|.|
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~--------------------------~~~~~~C~IC~~~~~~~~~~~~l~C~H~F 65 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGA--------------------------VGQEMCCPICCSEYVKGDVATELPCHHYF 65 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSS--------------------------SSSCSEETTTTEECCTTCEEEEETTTEEE
T ss_pred cCCCCCCHHHHHhCCCeeecccccc--------------------------cCCCCCCcccChhhcCCCcEEecCCCChH
Confidence 3467899999999998776643211 13457899999999999999999999999
Q ss_pred ChhhHHHhhhcCCCCCcccccccC
Q 018193 331 HSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 331 H~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
|..||++|++.+.+||+||+.+..
T Consensus 66 h~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 66 HKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred HHHHHHHHHHcCCcCcCcCccCCC
Confidence 999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.1e-18 Score=128.44 Aligned_cols=53 Identities=42% Similarity=1.010 Sum_probs=48.9
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
.++.+|+||+++|.+++.++.+||+|.||..||++|++.+.+||+||+++.+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34578999999999999999999999999999999999999999999998764
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.61 E-value=5e-16 Score=111.09 Aligned_cols=51 Identities=43% Similarity=1.102 Sum_probs=47.1
Q ss_pred CCCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcCCCCCccccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
+++.+|+||+++|++++.+..+| |+|.||..||++|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 35678999999999999999998 9999999999999999999999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=113.05 Aligned_cols=54 Identities=39% Similarity=0.962 Sum_probs=49.1
Q ss_pred CCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
..++.+|+||++.|..++.++.+||+|.||..||.+|++.+.+||+||+.+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999999999989999999999999999999999999999999988653
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=114.69 Aligned_cols=54 Identities=35% Similarity=0.934 Sum_probs=49.4
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 356 (359)
.++.+|+||++.|.+++.++.|||+|.||..||++|++.+.+||+||+++.+-.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 456789999999999999999999999999999999999999999999987643
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=2.1e-15 Score=115.56 Aligned_cols=54 Identities=39% Similarity=0.972 Sum_probs=49.6
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 356 (359)
.++.+|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 456789999999999999999999999999999999999999999999987654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=6e-15 Score=114.53 Aligned_cols=51 Identities=35% Similarity=0.795 Sum_probs=42.9
Q ss_pred CCccccccCCCccC-----------CCceEEcC-CCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 304 EDAECCICLSSYED-----------GTELHALP-CNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 304 ~~~~C~ICL~~~~~-----------~~~lr~Lp-C~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
++.+|+||+++|++ ++.++.++ |+|.||.+||++||+.+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45678888888864 45566776 99999999999999999999999998754
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.50 E-value=1.5e-14 Score=103.18 Aligned_cols=50 Identities=36% Similarity=0.719 Sum_probs=44.2
Q ss_pred CCccccccCCCccCC-CceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 304 EDAECCICLSSYEDG-TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~-~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
++.+|+||+++|.++ +.+..+||+|.||..||++|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 457899999999664 45788999999999999999999999999999874
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.47 E-value=1.6e-14 Score=108.37 Aligned_cols=54 Identities=30% Similarity=0.633 Sum_probs=47.5
Q ss_pred CCCccccccCCCccCC----CceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193 303 PEDAECCICLSSYEDG----TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~----~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 356 (359)
.++.+|+||++.|.+. +....++|||.||..||++|++.+.+||+||+++...+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 4567899999999763 56688999999999999999999999999999987654
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.9e-14 Score=104.83 Aligned_cols=53 Identities=30% Similarity=0.636 Sum_probs=46.0
Q ss_pred CCCCccccccCCCccCC----CceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 302 LPEDAECCICLSSYEDG----TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 302 ~~~~~~C~ICL~~~~~~----~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
..++.+|+||++.|.+. +.+..++|+|.||..||++|++.+.+||+||.++.+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 35667899999999864 455789999999999999999999999999998864
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.45 E-value=5.4e-14 Score=115.40 Aligned_cols=51 Identities=24% Similarity=0.562 Sum_probs=42.8
Q ss_pred CCccccccCCCccCCC---------------ceEEcCCCceeChhhHHHhh-----hcCCCCCcccccccC
Q 018193 304 EDAECCICLSSYEDGT---------------ELHALPCNHHFHSTCIVKWL-----KMNATCPLCKYNILK 354 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~---------------~lr~LpC~H~FH~~CId~WL-----~~~~tCPlCR~~I~~ 354 (359)
.+.+|+||+++|.++. .++.++|+|.||..||++|+ +.+.+||+||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999997653 45588999999999999999 457799999998754
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.45 E-value=4.5e-14 Score=115.36 Aligned_cols=50 Identities=34% Similarity=0.626 Sum_probs=43.7
Q ss_pred CCCccccccCCCccCC---------------CceEEcCCCceeChhhHHHhhhcCCCCCcccccc
Q 018193 303 PEDAECCICLSSYEDG---------------TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~---------------~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I 352 (359)
.++..|+||++.|++. ..++.++|+|.||..||++||+.+.+||+||+++
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 3567899999999865 1367889999999999999999999999999985
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.43 E-value=3.6e-14 Score=104.05 Aligned_cols=53 Identities=30% Similarity=0.629 Sum_probs=46.3
Q ss_pred CCccccccCCCccCC----CceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193 304 EDAECCICLSSYEDG----TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~----~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 356 (359)
++.+|+||++.|.++ +.+..++|||.||.+||++|++.+.+||+||.++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 457899999999764 55688899999999999999999999999999987653
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=8.9e-14 Score=107.90 Aligned_cols=53 Identities=32% Similarity=0.825 Sum_probs=45.2
Q ss_pred CCCCccccccCCCccCCCceEEcCCC-----ceeChhhHHHhhhcCC--CCCcccccccCC
Q 018193 302 LPEDAECCICLSSYEDGTELHALPCN-----HHFHSTCIVKWLKMNA--TCPLCKYNILKG 355 (359)
Q Consensus 302 ~~~~~~C~ICL~~~~~~~~lr~LpC~-----H~FH~~CId~WL~~~~--tCPlCR~~I~~~ 355 (359)
..++.+|.||+++|++++.+ .+||+ |.||.+||++||+.+. +||+||+++.-.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34567899999999988776 58997 9999999999998764 899999988643
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=9.4e-14 Score=104.11 Aligned_cols=51 Identities=39% Similarity=1.036 Sum_probs=45.6
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNE 357 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 357 (359)
.++.+|+||++.+.+ ..+||+|.||..||++|++.+.+||+||+++...+.
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 456789999999877 788999999999999999999999999999886554
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.38 E-value=2.3e-13 Score=101.34 Aligned_cols=50 Identities=40% Similarity=0.866 Sum_probs=43.7
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
.++.+|+||++.+.++ ...+||+|.||..||++|++.+.+||+||+++..
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3457899999998753 4789999999999999999999999999998754
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.6e-13 Score=101.11 Aligned_cols=51 Identities=25% Similarity=0.608 Sum_probs=44.4
Q ss_pred CCCccccccCCCccCCCceEEc-CCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193 303 PEDAECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 356 (359)
.++..|+||++.+.+. ..+ +|+|.||..||++|++.+.+||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 4567899999999875 454 99999999999999999999999999987654
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.7e-13 Score=102.08 Aligned_cols=49 Identities=31% Similarity=0.647 Sum_probs=43.8
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
.++.+|+||++.+.+. ..+||+|.||..||++|++.+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4567899999999775 778999999999999999999999999998864
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.8e-13 Score=102.48 Aligned_cols=54 Identities=30% Similarity=0.594 Sum_probs=46.6
Q ss_pred CCCCccccccCCCccCCCc-eEEcCCCceeChhhHHHhhhcC---CCCCcccccccCC
Q 018193 302 LPEDAECCICLSSYEDGTE-LHALPCNHHFHSTCIVKWLKMN---ATCPLCKYNILKG 355 (359)
Q Consensus 302 ~~~~~~C~ICL~~~~~~~~-lr~LpC~H~FH~~CId~WL~~~---~tCPlCR~~I~~~ 355 (359)
..++.+|+||++.|.+++. .+.++|||.||..||++|++.+ .+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3556789999999998765 6888999999999999999886 7999999987654
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=99.15 Aligned_cols=52 Identities=29% Similarity=0.672 Sum_probs=44.7
Q ss_pred CCCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcC--CCCCcccccccCCCC
Q 018193 303 PEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMN--ATCPLCKYNILKGNE 357 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~--~tCPlCR~~I~~~~~ 357 (359)
.++..|+||++.|.++ ..+| |+|.||..||++|++.+ .+||+||+++...+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 4567899999999876 6799 99999999999999876 689999998766543
No 21
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.32 E-value=1.6e-13 Score=113.97 Aligned_cols=50 Identities=34% Similarity=0.629 Sum_probs=1.5
Q ss_pred CCCccccccCCCccCC-------------C--ceEEcCCCceeChhhHHHhhhcCCCCCcccccc
Q 018193 303 PEDAECCICLSSYEDG-------------T--ELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~-------------~--~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I 352 (359)
.+++.|+||+++|++. + .+..++|+|.||..||++||+.+.+||+||+++
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CCC--------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 3567899999999762 2 233458999999999999999999999999985
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=100.36 Aligned_cols=48 Identities=19% Similarity=0.551 Sum_probs=43.0
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
.++..|+||++.|.+. ..+||+|.||..||.+|++.+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567899999999775 56899999999999999999999999999875
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.5e-12 Score=96.87 Aligned_cols=51 Identities=31% Similarity=0.643 Sum_probs=43.8
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhh---cCCCCCcccccccCCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK---MNATCPLCKYNILKGN 356 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~---~~~tCPlCR~~I~~~~ 356 (359)
.++..|+||++.|.+. ..+||+|.||..||.+|++ .+.+||+||.++..++
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 5567899999999865 6779999999999999997 4568999999987654
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2e-12 Score=95.79 Aligned_cols=51 Identities=22% Similarity=0.546 Sum_probs=43.5
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhh-hcCCCCCcccccccCCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWL-KMNATCPLCKYNILKGN 356 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~~ 356 (359)
.++..|+||++.+.++ ..++|||.||..||.+|+ +.+.+||+||.++..++
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4567899999999877 347999999999999999 45679999999987653
No 25
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=3.1e-12 Score=97.64 Aligned_cols=55 Identities=24% Similarity=0.495 Sum_probs=45.5
Q ss_pred CCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC--CCCCcccccccCCCCC
Q 018193 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN--ATCPLCKYNILKGNEQ 358 (359)
Q Consensus 302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~--~tCPlCR~~I~~~~~~ 358 (359)
.+...+|+||.+.+..++... .|+|.||..||++||+.+ .+||+||++...+..+
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred cCCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence 345578999999998775433 799999999999999987 7999999988765544
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.23 E-value=2e-12 Score=109.93 Aligned_cols=48 Identities=33% Similarity=0.886 Sum_probs=42.9
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
++..|+||++.|.++ ..+||||.||..||.+|++.+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 345799999999875 678999999999999999999999999998854
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=7.6e-12 Score=96.42 Aligned_cols=50 Identities=28% Similarity=0.686 Sum_probs=43.9
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc------CCCCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM------NATCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~------~~tCPlCR~~I~~~ 355 (359)
.++.+|+||++.|.+. ..+||+|.||..||.+|++. +.+||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4567899999999876 56799999999999999987 77999999988754
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=1e-11 Score=95.73 Aligned_cols=50 Identities=30% Similarity=0.688 Sum_probs=44.0
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc------CCCCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM------NATCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~------~~tCPlCR~~I~~~ 355 (359)
.++..|+||++.|.++ ..+||+|.||..||.+|++. +.+||+||..+..+
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4567899999999887 57899999999999999987 67899999988654
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=3.6e-12 Score=106.21 Aligned_cols=53 Identities=30% Similarity=0.643 Sum_probs=46.5
Q ss_pred CCCccccccCCCccCC----CceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDG----TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~----~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
.++.+|+||++.|.++ +....++|||.||.+||++|++.+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 4567899999999764 5668899999999999999999999999999988654
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.20 E-value=9.3e-12 Score=95.08 Aligned_cols=50 Identities=28% Similarity=0.558 Sum_probs=43.9
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~ 355 (359)
.++..|+||++.|.++ ..++|||.||..||.+|++. +.+||+||.++...
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 4567899999999876 66799999999999999987 78999999988654
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.3e-11 Score=89.12 Aligned_cols=44 Identities=34% Similarity=0.727 Sum_probs=38.3
Q ss_pred CCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhh---cCCCCCcc
Q 018193 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK---MNATCPLC 348 (359)
Q Consensus 302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~---~~~tCPlC 348 (359)
..++..|+||++.|.+. ..+||||.||..||.+|++ .+.+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35667899999999876 6789999999999999998 45689998
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.18 E-value=4.3e-12 Score=102.10 Aligned_cols=50 Identities=28% Similarity=0.665 Sum_probs=43.1
Q ss_pred CCCccccccCCCccCCCceEE-cCCCceeChhhHHHhhhcC-CCCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHA-LPCNHHFHSTCIVKWLKMN-ATCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~-LpC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~ 355 (359)
.++..|+||++.|.++ .. ++|||.||..||.+|++.+ .+||+||.++...
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 4557899999999864 55 8999999999999999988 6999999988653
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.18 E-value=4e-12 Score=97.10 Aligned_cols=50 Identities=28% Similarity=0.608 Sum_probs=43.2
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-------CCCCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-------NATCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-------~~tCPlCR~~I~~~ 355 (359)
.++..|+||++.|.+. ..+||||.||..||.+|++. +.+||+||..+...
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4567899999999876 45899999999999999987 66899999988653
No 34
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.17 E-value=1.8e-11 Score=96.35 Aligned_cols=50 Identities=30% Similarity=0.697 Sum_probs=43.1
Q ss_pred cCCCCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcC--CCCCccccccc
Q 018193 301 LLPEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMN--ATCPLCKYNIL 353 (359)
Q Consensus 301 ~~~~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~--~tCPlCR~~I~ 353 (359)
...++..|+||++.|.++ ..+| |||.||..||.+|+..+ .+||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345678999999999877 6889 99999999999999754 58999999874
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.6e-11 Score=88.14 Aligned_cols=43 Identities=30% Similarity=0.950 Sum_probs=37.2
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhh---hcCCCCCcc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWL---KMNATCPLC 348 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL---~~~~tCPlC 348 (359)
.++..|+||++.+.++ ..++|+|.||..||++|+ +.+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999887 558999999999999995 456789998
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.16 E-value=9e-12 Score=103.79 Aligned_cols=54 Identities=30% Similarity=0.633 Sum_probs=46.7
Q ss_pred CCCccccccCCCccCC----CceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCC
Q 018193 303 PEDAECCICLSSYEDG----TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 356 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~----~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 356 (359)
+++.+|+||++.|++. .....++|||.||..||++|++.+.+||+||.++.+++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 4567899999999763 45578899999999999999999999999999987653
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.4e-11 Score=90.88 Aligned_cols=53 Identities=23% Similarity=0.522 Sum_probs=42.9
Q ss_pred CCccccccCC-CccCCCce-EEcCCCceeChhhHHHhhhc-CCCCCcccccccCCC
Q 018193 304 EDAECCICLS-SYEDGTEL-HALPCNHHFHSTCIVKWLKM-NATCPLCKYNILKGN 356 (359)
Q Consensus 304 ~~~~C~ICL~-~~~~~~~l-r~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~ 356 (359)
++..|+||++ .|.++... ..++|||.||..||++|+.. +.+||+||..+.+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3567999999 77776543 46799999999999999765 468999999987654
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.16 E-value=7.9e-12 Score=99.99 Aligned_cols=48 Identities=27% Similarity=0.731 Sum_probs=42.2
Q ss_pred CCccccccCCCccCCCceEEc-CCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 304 EDAECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
++..|+||++.|.++ ..+ +|||.||..||.+|++.+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 456899999999875 455 899999999999999999999999998864
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.11 E-value=2.4e-11 Score=98.71 Aligned_cols=51 Identities=29% Similarity=0.729 Sum_probs=43.3
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
.++..|+||++.|.++ +..++|||.||..||.+|++.+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3457899999999764 33349999999999999999999999999988753
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.08 E-value=3.5e-11 Score=100.19 Aligned_cols=48 Identities=21% Similarity=0.607 Sum_probs=42.0
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-CCCcccccccC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNILK 354 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I~~ 354 (359)
++..|+||++.|.++ ..+||||.||..||.+|++.+. +||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 446899999999876 6789999999999999998655 99999999865
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.07 E-value=5.2e-11 Score=103.96 Aligned_cols=49 Identities=29% Similarity=0.752 Sum_probs=41.6
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCcccccccC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNILK 354 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~ 354 (359)
++..|+||++.|.+. +..+||||.||..||++|++. +.+||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456899999999874 344599999999999999997 7799999998853
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.06 E-value=5.5e-11 Score=98.27 Aligned_cols=50 Identities=30% Similarity=0.697 Sum_probs=43.5
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-CCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~ 355 (359)
.++..|+||++.+.++ ..++|||.||..||.+|++.+. +||+||.++...
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4557899999999876 6689999999999999998766 999999988653
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=7.3e-11 Score=95.98 Aligned_cols=48 Identities=38% Similarity=0.767 Sum_probs=41.6
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC---CCCcccccccCC
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA---TCPLCKYNILKG 355 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~---tCPlCR~~I~~~ 355 (359)
+..|+||++.|.++ ..+||||.||..||.+|+..+. +||+||.++...
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 45799999999876 4579999999999999998764 899999988754
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.01 E-value=4.1e-11 Score=98.39 Aligned_cols=48 Identities=25% Similarity=0.719 Sum_probs=42.1
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCccccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNIL 353 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~ 353 (359)
.++..|+||++.|.+. ..+||||.||..||.+|++. +.+||+||..+.
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3457899999999876 67899999999999999977 668999999875
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.99 E-value=9.6e-11 Score=96.29 Aligned_cols=49 Identities=31% Similarity=0.729 Sum_probs=42.6
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCcccccccCC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNILKG 355 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~ 355 (359)
++..|+||++.+.++ ..++|||.||..||++|++. +.+||+||.++...
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 356899999999876 56899999999999999987 77999999988653
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.97 E-value=1.6e-10 Score=99.85 Aligned_cols=49 Identities=18% Similarity=0.508 Sum_probs=42.8
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-CCCcccccccCC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNILKG 355 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~ 355 (359)
++..|+||++.|.++ ..+||+|.||..||.+|++.+. +||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 346899999999876 5689999999999999998765 899999998765
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=2.3e-10 Score=82.19 Aligned_cols=49 Identities=24% Similarity=0.512 Sum_probs=41.4
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCCCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNE 357 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 357 (359)
.++..|+||++.|.+. +.|||+|.||..||.+| +.+||+||+.+...+.
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 3457899999999886 67899999999999985 6789999998875543
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.94 E-value=2.6e-10 Score=84.31 Aligned_cols=47 Identities=30% Similarity=0.545 Sum_probs=40.2
Q ss_pred CCccccccCCCccCCCceEEc--CCCce-eChhhHHHhhhcCCCCCccccccc
Q 018193 304 EDAECCICLSSYEDGTELHAL--PCNHH-FHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~L--pC~H~-FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
++.+|.||++...+. ..+ ||||. |+.+|+++|.+.+.+||+||++|.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999987664 444 99999 789999999999999999999885
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.90 E-value=8.9e-10 Score=84.81 Aligned_cols=53 Identities=19% Similarity=0.452 Sum_probs=41.4
Q ss_pred CCCccccccCCCccCCCceEEc--CCCceeChhhHHHhhh-cCCCCCcccccccCCC
Q 018193 303 PEDAECCICLSSYEDGTELHAL--PCNHHFHSTCIVKWLK-MNATCPLCKYNILKGN 356 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~L--pC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~~ 356 (359)
+++.+|+||++.+...+. ..+ +|||.||..|+.++.+ .+..||.||+.+.+.+
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 566789999999864332 344 4999999999999875 3568999999887644
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.88 E-value=8.9e-10 Score=108.43 Aligned_cols=47 Identities=28% Similarity=0.724 Sum_probs=41.8
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhh-cCCCCCcccccccC
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPLCKYNILK 354 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~-~~~tCPlCR~~I~~ 354 (359)
..+|+||++.+.+. ..+||||.||..|+.+|+. .+.+||+||.++..
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 36899999998664 7899999999999999998 78899999998865
No 51
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.86 E-value=5.2e-10 Score=107.64 Aligned_cols=51 Identities=31% Similarity=0.772 Sum_probs=41.2
Q ss_pred CCCccccccCCCccCCCceE-----EcCCCceeChhhHHHhhhcC-----------CCCCccccccc
Q 018193 303 PEDAECCICLSSYEDGTELH-----ALPCNHHFHSTCIVKWLKMN-----------ATCPLCKYNIL 353 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr-----~LpC~H~FH~~CId~WL~~~-----------~tCPlCR~~I~ 353 (359)
....+|+||++.+.++.++. ..+|+|.||..||.+||+.. ++||.||++|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45678999999998854443 34699999999999999753 57999999875
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.86 E-value=3e-09 Score=85.69 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=45.4
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
+++..|+||++-|.++ ..+||||.|+..||.+|+..+.+||.||.++...
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 5678899999999998 7889999999999999999899999999988653
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.86 E-value=5.9e-10 Score=95.24 Aligned_cols=48 Identities=19% Similarity=0.474 Sum_probs=42.2
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-CCCccccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNIL 353 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I~ 353 (359)
+++..|+||++.+.++ ..++|||.||..||.+|++.+. +||+||.++.
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4567899999999887 6689999999999999998765 8999999764
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.86 E-value=1.5e-09 Score=84.67 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=44.7
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
.++..|+||++-|.++ ..++|||.|+..||.+|+..+.+||.||.++..
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 5678899999999998 788999999999999999999999999998754
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.85 E-value=7.9e-10 Score=81.45 Aligned_cols=48 Identities=27% Similarity=0.503 Sum_probs=39.8
Q ss_pred CccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCccccccc
Q 018193 305 DAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
+.+|.||++...+.. +..+||||. |+.+|+.+|.+.+.+||+||++|.
T Consensus 7 ~~~C~IC~~~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGN-IIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEE-EEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeE-EEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 467999999866541 223499998 999999999998899999999885
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.84 E-value=7.3e-10 Score=91.32 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=41.6
Q ss_pred CCCccccccCCCccCCCceEEc-CCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
.++..|+||++.|.++ ..+ +|||.||..||.+|+. .+||+||..+...
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 3467899999999876 566 8999999999999998 8899999988543
No 57
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.82 E-value=2.3e-09 Score=86.00 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=45.3
Q ss_pred CCCccccccCCCccCCCceEEcCCC-ceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCN-HHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~-H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
+++..|+||++-|.++ ..++|| |.|+..||.+|+..+.+||+||.++...
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 5678899999999998 778999 9999999999999999999999988653
No 58
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.80 E-value=1.8e-09 Score=78.95 Aligned_cols=48 Identities=27% Similarity=0.703 Sum_probs=37.8
Q ss_pred CCCccccccCCCccCCCceEEcCCC--c---eeChhhHHHhhhc--CCCCCccccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCN--H---HFHSTCIVKWLKM--NATCPLCKYNIL 353 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~--H---~FH~~CId~WL~~--~~tCPlCR~~I~ 353 (359)
++...|.||+++. ++++ .+||. | .||..|+++|+.. +.+||+||+++.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3457899999983 3344 68965 4 9999999999975 678999998764
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.78 E-value=1.1e-09 Score=83.21 Aligned_cols=44 Identities=27% Similarity=0.542 Sum_probs=38.3
Q ss_pred CCccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCcccccccC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
++..|+||++.+.+. ..+||||. |+..|+.+| .+||+||.++.+
T Consensus 23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 456899999987664 77899999 999999999 889999998864
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.75 E-value=2.8e-09 Score=93.28 Aligned_cols=50 Identities=30% Similarity=0.697 Sum_probs=43.2
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-CCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~ 355 (359)
.++..|+||++.+.++ ..++|||.|+..||.+|++.+. +||+||.++..+
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4567899999999876 6689999999999999998754 999999988653
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=3.1e-08 Score=74.06 Aligned_cols=47 Identities=21% Similarity=0.634 Sum_probs=38.9
Q ss_pred cCCCCccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCcccccccC
Q 018193 301 LLPEDAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 301 ~~~~~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
...++..|.||++...+ +..+||+|. |+..|+.. ..+||+||.+|..
T Consensus 11 ~~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 33556789999998765 488999999 99999984 5789999998864
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=2e-08 Score=93.58 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=43.1
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC-CCCcccccccC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYNILK 354 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~I~~ 354 (359)
++...|+||++-|.++ ..+||||.|+..||.+|+..+. +||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4667899999999988 7899999999999999998754 59999998854
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=1.7e-08 Score=80.15 Aligned_cols=46 Identities=22% Similarity=0.480 Sum_probs=39.6
Q ss_pred CCCccccccCCCccCCCceEEcC-CCceeChhhHHHhhhcC------CCCCc--cccc
Q 018193 303 PEDAECCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKMN------ATCPL--CKYN 351 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~~------~tCPl--CR~~ 351 (359)
.++..|+||++-|.++ ..+| |||.|+..||.+|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4567899999999987 6786 99999999999999864 48999 9865
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=2.5e-08 Score=75.69 Aligned_cols=45 Identities=27% Similarity=0.524 Sum_probs=37.4
Q ss_pred CCccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCcccccccCC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
++.+|+||++.+.+. ..+||||. |+..|+.+ ..+||+||.++...
T Consensus 24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 456799999998765 67899999 99999965 47899999988653
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.51 E-value=3.7e-08 Score=77.86 Aligned_cols=48 Identities=21% Similarity=0.618 Sum_probs=40.5
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc--------CCCCCc--cccc
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM--------NATCPL--CKYN 351 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~--------~~tCPl--CR~~ 351 (359)
+..+|+||++++.+++.+...+|+|.|+.+|+.++++. ..+||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35689999999988777666789999999999999964 237999 9987
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.45 E-value=3.2e-08 Score=76.08 Aligned_cols=44 Identities=23% Similarity=0.675 Sum_probs=37.0
Q ss_pred CCccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCcccccccC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
++..|.||++.+.+. ..+||||. |+..|+.+| ..||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 346899999987654 78899999 999999987 389999998754
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.39 E-value=1.2e-07 Score=83.93 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=43.4
Q ss_pred CCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC-CCCCcccccccC
Q 018193 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN-ATCPLCKYNILK 354 (359)
Q Consensus 302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~-~tCPlCR~~I~~ 354 (359)
.++...|+||++-|.++ ..+||||.|...||.+|+..+ .+||.|+.++..
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 35667899999999987 778999999999999999874 479999998754
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.32 E-value=1.8e-07 Score=91.11 Aligned_cols=45 Identities=24% Similarity=0.620 Sum_probs=39.1
Q ss_pred CCCccccccCCCccCCCceEEcCCCce-eChhhHHHhhhcCCCCCcccccccC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHH-FHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~-FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
.++..|+||++.+.+. ..+||||. ||..|+.+| ..||+||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4567899999998765 77899999 999999998 789999998854
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.31 E-value=1.9e-07 Score=68.35 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=41.7
Q ss_pred ccccccCCCccCCCceEEc-CCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 306 AECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
..|+||++-++++ ..+ +|||.|-..||.+|++.+.+||+++.++...
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 5699999999976 666 8999999999999999999999999987543
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.3e-06 Score=81.52 Aligned_cols=50 Identities=28% Similarity=0.503 Sum_probs=41.1
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC--CCCCc--ccccccC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN--ATCPL--CKYNILK 354 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~--~tCPl--CR~~I~~ 354 (359)
..+..|+||++-|.++ ++.+.|||.|+..||.+|++.+ .+||. ||..+..
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3457899999999776 3446899999999999999865 47999 9987754
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.85 E-value=8.2e-06 Score=75.41 Aligned_cols=52 Identities=27% Similarity=0.546 Sum_probs=41.8
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC--CCCcccccccCCCC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA--TCPLCKYNILKGNE 357 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~--tCPlCR~~I~~~~~ 357 (359)
...+|.||.+-...+.... .|+|.||..|+++|++.+. +||.|+.+......
T Consensus 179 ~i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 4678999999988773332 3999999999999998765 89999998765543
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.69 E-value=1.9e-05 Score=62.80 Aligned_cols=45 Identities=24% Similarity=0.544 Sum_probs=36.4
Q ss_pred ccccCCCccCCCceEEcCCCceeChhhHHHhhhc-CCCCCcccccccC
Q 018193 308 CCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-NATCPLCKYNILK 354 (359)
Q Consensus 308 C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~tCPlCR~~I~~ 354 (359)
|.+|--.+. ...|.+||+|.|+-+|+..|.++ .++||.|+.+|.+
T Consensus 4 C~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 666655543 35689999999999999999855 6799999998864
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.43 E-value=0.048 Score=40.02 Aligned_cols=47 Identities=21% Similarity=0.448 Sum_probs=34.2
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCcccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYNI 352 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~I 352 (359)
..+..|.||-+ .++.+.-=.|...||..|++..|.... .||.|+..-
T Consensus 10 ~~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34577999974 344333334899999999999986543 699998654
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.12 E-value=0.033 Score=43.64 Aligned_cols=36 Identities=14% Similarity=0.370 Sum_probs=28.7
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHH-hh
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVK-WL 339 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~-WL 339 (359)
++..|.||+++|..+....-++|+|.|+..|+.. |-
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4568999998865554555699999999999998 54
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.97 E-value=0.023 Score=44.47 Aligned_cols=46 Identities=24% Similarity=0.588 Sum_probs=37.7
Q ss_pred CccccccCCCccCCCceEEcCCC-ceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 305 DAECCICLSSYEDGTELHALPCN-HHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~-H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
-..|-.|.-+.+. ...|+ |..+..|+..-|.++..||+|+.+++..
T Consensus 28 ~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3569999876432 44575 9999999999999999999999998764
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.83 E-value=0.07 Score=38.48 Aligned_cols=49 Identities=22% Similarity=0.464 Sum_probs=34.5
Q ss_pred CCCccccccCCCccCCCceEE-cCCCceeChhhHHHhhh-----cCCCCCccccc
Q 018193 303 PEDAECCICLSSYEDGTELHA-LPCNHHFHSTCIVKWLK-----MNATCPLCKYN 351 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~-LpC~H~FH~~CId~WL~-----~~~tCPlCR~~ 351 (359)
.++..|+||...|.++..... -.|...||..|+.---. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 455679999999875544333 34999999999975432 23479999653
No 77
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=89.31 E-value=0.092 Score=37.48 Aligned_cols=52 Identities=31% Similarity=0.630 Sum_probs=36.7
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCcccccccCCCCC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYNILKGNEQ 358 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~I~~~~~~ 358 (359)
++..|.+|-.. ++.+.--.|...||..|+++=+.... .||.|+....+.++-
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~~~~ 59 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEEA 59 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHTTTT
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhchhcc
Confidence 46789999874 44333335899999999997654322 599998877666553
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=89.26 E-value=0.25 Score=37.88 Aligned_cols=36 Identities=19% Similarity=0.544 Sum_probs=24.4
Q ss_pred CCCCccccccCCCccCCCceEEcCCCceeChhhHHHh
Q 018193 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKW 338 (359)
Q Consensus 302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~W 338 (359)
...|..|.||- .+..++.+.-=-|+-.||..|+.+-
T Consensus 12 ~~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 35678899984 4444432222228899999999995
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=88.80 E-value=0.16 Score=37.72 Aligned_cols=53 Identities=19% Similarity=0.341 Sum_probs=35.7
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc----CCCCCcccccccCCC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM----NATCPLCKYNILKGN 356 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~----~~tCPlCR~~I~~~~ 356 (359)
++..|.||-.....+.-+.-=.|.-.||..|+..-... .-.||.|+..+.+..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~k 73 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDK 73 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSCC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhcc
Confidence 34569999887643223332348999999999865543 236999988776543
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.76 E-value=0.31 Score=34.91 Aligned_cols=46 Identities=20% Similarity=0.549 Sum_probs=32.3
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC----CCCCccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN----ATCPLCKYN 351 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~----~tCPlCR~~ 351 (359)
.++..|.||-.. ++.+.--.|...||..|++.=+... =.||.|+..
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456789999863 4333333488999999999865432 269999763
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.81 E-value=0.2 Score=35.89 Aligned_cols=50 Identities=28% Similarity=0.544 Sum_probs=34.1
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCcccccccCC
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYNILKG 355 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~I~~~ 355 (359)
.++..|.||-+. ++.+.--.|...||..|++.=|.... .||.|+....++
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k~ 60 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG 60 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCTT
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhcC
Confidence 346679999752 33322224889999999997654322 599998876654
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.37 E-value=0.44 Score=32.55 Aligned_cols=44 Identities=30% Similarity=0.591 Sum_probs=30.0
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCcccc
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKY 350 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~ 350 (359)
.|.||...-+.++.+.--.|...||..|++.=+.... .||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5889987644444444445999999999986444322 5999975
No 83
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.66 E-value=0.48 Score=37.79 Aligned_cols=47 Identities=26% Similarity=0.606 Sum_probs=31.6
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhc----CCCCCccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM----NATCPLCK 349 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~----~~tCPlCR 349 (359)
.++..|.||.+.=+..+.+.--.|...||..|++..+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 466789999886333333444459999999999987742 12466553
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.90 E-value=0.3 Score=34.25 Aligned_cols=45 Identities=29% Similarity=0.616 Sum_probs=31.3
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCcccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKY 350 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~ 350 (359)
.++..|.+|-.. ++.+.--.|...||..|+++=|.... .||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999874 43333335889999999997654322 5988854
No 85
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=83.79 E-value=0.67 Score=31.91 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=30.0
Q ss_pred cccccCCCccCCCceEE-c-CCCceeChhhHHHhh----hcCCCCCccc
Q 018193 307 ECCICLSSYEDGTELHA-L-PCNHHFHSTCIVKWL----KMNATCPLCK 349 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~-L-pC~H~FH~~CId~WL----~~~~tCPlCR 349 (359)
.|++|...|.+++.... - .|...||..|+.--- ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 58899999876554333 3 488899999987432 2455799985
No 86
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.72 E-value=0.32 Score=37.86 Aligned_cols=49 Identities=24% Similarity=0.524 Sum_probs=33.2
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYN 351 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~ 351 (359)
.++..|.||...-..++.+.-=.|...||..|+++=|.... .||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45667999998754333333334999999999985443322 49999753
No 87
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=83.10 E-value=0.52 Score=34.19 Aligned_cols=46 Identities=24% Similarity=0.584 Sum_probs=32.2
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYN 351 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~ 351 (359)
.++..|.||-.. ++.+.-=.|...||..|++.=|.... .||.|+..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 456789999863 43333334889999999997654322 59999754
No 88
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=82.07 E-value=0.91 Score=35.58 Aligned_cols=46 Identities=24% Similarity=0.417 Sum_probs=31.1
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhc---CCCCCcccc
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM---NATCPLCKY 350 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~---~~tCPlCR~ 350 (359)
+..-+||-...+++..+.-=.|.-.||..|+..=+.. .-.||.|+.
T Consensus 27 d~vrCiC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCCTTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEeECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3333399888776654444459999999999753322 236999974
No 89
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.69 E-value=1.6 Score=33.77 Aligned_cols=47 Identities=23% Similarity=0.513 Sum_probs=33.1
Q ss_pred CCCCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCccccc
Q 018193 302 LPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYN 351 (359)
Q Consensus 302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~ 351 (359)
..++..|.+|... ++-+.--.|.-.||..|+++=|.... .||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3566789999864 44333334889999999987665422 59999754
No 90
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.54 E-value=1.6 Score=32.66 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=30.6
Q ss_pred ccccccCCCccCCCc-eEEcCCCceeChhhHHHhhh-----cCCCCCccccc
Q 018193 306 AECCICLSSYEDGTE-LHALPCNHHFHSTCIVKWLK-----MNATCPLCKYN 351 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~-lr~LpC~H~FH~~CId~WL~-----~~~tCPlCR~~ 351 (359)
...+||-..+.++.. +.--.|...||..|+.-=-. ..-.||.|+..
T Consensus 12 ~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 344499998864443 33334999999999963221 23479999864
No 91
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=80.26 E-value=0.61 Score=35.92 Aligned_cols=54 Identities=24% Similarity=0.411 Sum_probs=34.0
Q ss_pred cCCCCccccccCCCcc-CCCceEEc-CCCceeChhhHHHhhhc--CCCCCcccccccC
Q 018193 301 LLPEDAECCICLSSYE-DGTELHAL-PCNHHFHSTCIVKWLKM--NATCPLCKYNILK 354 (359)
Q Consensus 301 ~~~~~~~C~ICL~~~~-~~~~lr~L-pC~H~FH~~CId~WL~~--~~tCPlCR~~I~~ 354 (359)
...++..|.||...-. +++.+..- .|.-.||..|+..=+.- .=-||.|+.....
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 3456788999997642 22232222 38899999999854311 1259999765443
No 92
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=79.30 E-value=1.3 Score=32.02 Aligned_cols=35 Identities=23% Similarity=0.477 Sum_probs=25.8
Q ss_pred CCCccccccCCCccCCCceEEc--CCCceeChhhHHH
Q 018193 303 PEDAECCICLSSYEDGTELHAL--PCNHHFHSTCIVK 337 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~L--pC~H~FH~~CId~ 337 (359)
+....|++|...|.+++....- .|.-.||..|+.-
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 4456799999999877655444 5999999999863
No 93
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.86 E-value=1.1 Score=33.18 Aligned_cols=46 Identities=24% Similarity=0.480 Sum_probs=31.4
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhh---------hcCCCCCccccc
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWL---------KMNATCPLCKYN 351 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL---------~~~~tCPlCR~~ 351 (359)
..-+||-..+.++..+.--.|...||..|+.-=- ...-.||.|+..
T Consensus 16 ~~~C~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCSTTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEEECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3444999887654444444599999999996322 235589999754
No 94
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.50 E-value=0.94 Score=33.29 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=31.0
Q ss_pred CccccccCCCccCCC-ceEEcCCCceeChhhHHHhh----hcCCCCCccccc
Q 018193 305 DAECCICLSSYEDGT-ELHALPCNHHFHSTCIVKWL----KMNATCPLCKYN 351 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~-~lr~LpC~H~FH~~CId~WL----~~~~tCPlCR~~ 351 (359)
...| ||-..+.+++ .+.-=.|...||..|+.-=- ...-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3457 7988876664 33333499999999987532 223479999753
No 95
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=73.97 E-value=1.3 Score=32.43 Aligned_cols=46 Identities=15% Similarity=0.439 Sum_probs=30.6
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhh---cCCCCCcccc
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK---MNATCPLCKY 350 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~---~~~tCPlCR~ 350 (359)
+...| ||-..+.++..+.--.|...||..|+.-=-. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34456 9998776443444445999999999974321 2336999964
No 96
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=73.72 E-value=2.8 Score=30.80 Aligned_cols=45 Identities=24% Similarity=0.529 Sum_probs=27.2
Q ss_pred CccccccCCCccCCCceEEcC--CC-ceeChhhHHHhhhcC----CCCCccccccc
Q 018193 305 DAECCICLSSYEDGTELHALP--CN-HHFHSTCIVKWLKMN----ATCPLCKYNIL 353 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~Lp--C~-H~FH~~CId~WL~~~----~tCPlCR~~I~ 353 (359)
..-| ||-.... ++.+.-=. |. ..||..|+. |... -.||.|+..-.
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 3345 8987643 43222113 55 689999998 4432 26999976543
No 97
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.47 E-value=1.2 Score=33.37 Aligned_cols=44 Identities=30% Similarity=0.553 Sum_probs=28.4
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhhc-----CCCCCcccc
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-----NATCPLCKY 350 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-----~~tCPlCR~ 350 (359)
.|.||...=..++.+.-=.|...||..|+++=|.. .=.||.|+.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68888865333333322248999999999964433 125999965
No 98
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.26 E-value=2.5 Score=32.74 Aligned_cols=45 Identities=24% Similarity=0.600 Sum_probs=27.3
Q ss_pred CccccccCCCccCCCceEEcC--CC-ceeChhhHHHhhhc----CCCCCcccccc
Q 018193 305 DAECCICLSSYEDGTELHALP--CN-HHFHSTCIVKWLKM----NATCPLCKYNI 352 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~Lp--C~-H~FH~~CId~WL~~----~~tCPlCR~~I 352 (359)
+...+||-.... ++.+.-=. |. ..||..||. |.. +-.||.|+..-
T Consensus 35 e~~yCiC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCSTTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEEECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 334449988653 33222223 54 689999998 433 22699997654
No 99
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=72.61 E-value=1.9 Score=46.78 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=43.8
Q ss_pred CCCCccccccCCCccCCCceEEcCCC-ceeChhhHHHhhhcCCCCCcccccccC
Q 018193 302 LPEDAECCICLSSYEDGTELHALPCN-HHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 302 ~~~~~~C~ICL~~~~~~~~lr~LpC~-H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
.++...|+|-++-+.|+ ..+|-| |.|-..+|.+||..+.+||.=|.++..
T Consensus 888 iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 35667899999999998 889987 689999999999999999998887754
No 100
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=72.54 E-value=2.2 Score=31.86 Aligned_cols=47 Identities=21% Similarity=0.513 Sum_probs=31.0
Q ss_pred CccccccCCCccCCCceEEc--CCCceeChhhHHHhhh---------cCCCCCcccccc
Q 018193 305 DAECCICLSSYEDGTELHAL--PCNHHFHSTCIVKWLK---------MNATCPLCKYNI 352 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~L--pC~H~FH~~CId~WL~---------~~~tCPlCR~~I 352 (359)
...| ||-....++..+.-= .|...||..|+.-=-. .+-.||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 3445 898875555444433 5999999999963221 244799997643
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=71.89 E-value=1.9 Score=34.37 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=30.3
Q ss_pred CccccccCCCccC-CCceEEcCCCceeChhhHHHhhhcCC----CCCcccc
Q 018193 305 DAECCICLSSYED-GTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKY 350 (359)
Q Consensus 305 ~~~C~ICL~~~~~-~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~ 350 (359)
-..|.||...-++ ++.+.--.|...||..|+++=|.... .||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3468888865323 33233334899999999987665422 6999974
No 102
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.19 E-value=0.68 Score=35.62 Aligned_cols=50 Identities=16% Similarity=0.384 Sum_probs=33.6
Q ss_pred CCccccccCCCccCC-CceEEc-CCCceeChhhHHHhhhc--------CCCCCccccccc
Q 018193 304 EDAECCICLSSYEDG-TELHAL-PCNHHFHSTCIVKWLKM--------NATCPLCKYNIL 353 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~-~~lr~L-pC~H~FH~~CId~WL~~--------~~tCPlCR~~I~ 353 (359)
++..|.||...-..+ +.+..= .|...||..|++.=|.. .=.||.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 467899999864432 232222 38999999999976642 126999976543
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=69.93 E-value=6.1 Score=31.37 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=23.5
Q ss_pred CCccccccCCCcc------CCCceEEcCCCceeChhhHHH
Q 018193 304 EDAECCICLSSYE------DGTELHALPCNHHFHSTCIVK 337 (359)
Q Consensus 304 ~~~~C~ICL~~~~------~~~~lr~LpC~H~FH~~CId~ 337 (359)
....|.+|+..=+ .++.+.--.|+..||..|++.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 3467999997632 223344445999999999964
No 104
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=69.07 E-value=3.4 Score=32.73 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=33.6
Q ss_pred CccccccCCCccCCCceEEc--CCCceeChhhHHHhh----h------cCCCCCccccc
Q 018193 305 DAECCICLSSYEDGTELHAL--PCNHHFHSTCIVKWL----K------MNATCPLCKYN 351 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~L--pC~H~FH~~CId~WL----~------~~~tCPlCR~~ 351 (359)
...|.||...|.++.+...= .|...||..|+.-=- . .+-.||.|+..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 35699999999776654444 489999999996321 0 23379999764
No 105
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=68.79 E-value=2.1 Score=30.55 Aligned_cols=50 Identities=18% Similarity=0.520 Sum_probs=33.6
Q ss_pred CCCccccccCCCccC--CCceEEcCCCceeChhhHHHhhhc-------CCCCCcccccc
Q 018193 303 PEDAECCICLSSYED--GTELHALPCNHHFHSTCIVKWLKM-------NATCPLCKYNI 352 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~--~~~lr~LpC~H~FH~~CId~WL~~-------~~tCPlCR~~I 352 (359)
.++..|.||...... ++.+.--.|.-.||..|++.=+.. .=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 456789999987543 322222249999999999975432 22699997643
No 106
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=68.78 E-value=1.3 Score=37.95 Aligned_cols=46 Identities=20% Similarity=0.523 Sum_probs=30.7
Q ss_pred CCccccccCCCccCCCce-EEcCCCceeChhhHHHhhh-----cCCCCCcccc
Q 018193 304 EDAECCICLSSYEDGTEL-HALPCNHHFHSTCIVKWLK-----MNATCPLCKY 350 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~l-r~LpC~H~FH~~CId~WL~-----~~~tCPlCR~ 350 (359)
++.-| +|...+.++... .-=.|...||..|+.---. ..-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 34567 999887654433 3334899999999963221 2347999975
No 107
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=67.40 E-value=1.7 Score=32.08 Aligned_cols=49 Identities=24% Similarity=0.424 Sum_probs=31.2
Q ss_pred CCCccccccCCCc-cCCCceEEc-CCCceeChhhHHHhhhcC--CCCCccccc
Q 018193 303 PEDAECCICLSSY-EDGTELHAL-PCNHHFHSTCIVKWLKMN--ATCPLCKYN 351 (359)
Q Consensus 303 ~~~~~C~ICL~~~-~~~~~lr~L-pC~H~FH~~CId~WL~~~--~tCPlCR~~ 351 (359)
.++..|.||...- .+++++..= .|.-.||..|++.=..-. =.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4567899998764 233333332 489999999998532111 158888653
No 108
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=66.47 E-value=1.7 Score=31.94 Aligned_cols=43 Identities=23% Similarity=0.540 Sum_probs=26.8
Q ss_pred cccccCCCccCCCceEEc-CCCceeChhhHHHhhhc-----CCCCCcccc
Q 018193 307 ECCICLSSYEDGTELHAL-PCNHHFHSTCIVKWLKM-----NATCPLCKY 350 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~L-pC~H~FH~~CId~WL~~-----~~tCPlCR~ 350 (359)
.|.||...=..+ ++..= .|...||..|+++=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466776542222 32222 38899999999965543 226999975
No 109
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=66.18 E-value=1.4 Score=32.07 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=27.8
Q ss_pred ccccccCCCccCCCceEEc--CCCceeChhhHHHhh---h-----cCCCCCcccc
Q 018193 306 AECCICLSSYEDGTELHAL--PCNHHFHSTCIVKWL---K-----MNATCPLCKY 350 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~L--pC~H~FH~~CId~WL---~-----~~~tCPlCR~ 350 (359)
..-+||-...+++..+.-= .|...||..|+.-=- . .+-.||.||.
T Consensus 10 ~v~C~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECCTTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEeECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3445897766666433322 388999999984210 1 1346999974
No 110
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=64.88 E-value=1.9 Score=32.31 Aligned_cols=44 Identities=25% Similarity=0.546 Sum_probs=26.6
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhhcC-----CCCCcccc
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN-----ATCPLCKY 350 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~-----~tCPlCR~ 350 (359)
.|.||-..-..++.+.-=.|...||..|+++=|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466665543222222222388999999999766432 25999975
No 111
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=64.79 E-value=1.6 Score=30.94 Aligned_cols=42 Identities=26% Similarity=0.602 Sum_probs=25.6
Q ss_pred ccccccCCCccCCCceEEcC--CC-ceeChhhHHHhhhcC----CCCCcccc
Q 018193 306 AECCICLSSYEDGTELHALP--CN-HHFHSTCIVKWLKMN----ATCPLCKY 350 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~Lp--C~-H~FH~~CId~WL~~~----~tCPlCR~ 350 (359)
...+||-... .++.+.-=. |. ..||..|+. |... -.||.|+.
T Consensus 9 ~~yC~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYCLCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEETTTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEEECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3444998764 243222223 55 699999998 4332 26999965
No 112
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=64.70 E-value=2.6 Score=38.15 Aligned_cols=44 Identities=25% Similarity=0.546 Sum_probs=25.3
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhhcC-----CCCCcccc
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN-----ATCPLCKY 350 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~-----~tCPlCR~ 350 (359)
.|.+|-..=..++-+.-=.|...||..|+++=|... =.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 588887643333333322489999999999655431 25999975
No 113
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=62.78 E-value=1.8 Score=30.78 Aligned_cols=42 Identities=26% Similarity=0.628 Sum_probs=25.1
Q ss_pred ccccccCCCccCCCceEEcC--CC-ceeChhhHHHhhhcC----CCCCcccc
Q 018193 306 AECCICLSSYEDGTELHALP--CN-HHFHSTCIVKWLKMN----ATCPLCKY 350 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~Lp--C~-H~FH~~CId~WL~~~----~tCPlCR~ 350 (359)
...+||..... ++.+.-=. |. ..||..|+. |... -.||.|+.
T Consensus 10 ~~~C~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEETTTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEEECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44559987642 32222113 44 689999998 5432 26999964
No 114
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=61.91 E-value=3.9 Score=32.69 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=22.9
Q ss_pred ccccccCCCccC------C-CceEEcCCCceeChhhHHHhh
Q 018193 306 AECCICLSSYED------G-TELHALPCNHHFHSTCIVKWL 339 (359)
Q Consensus 306 ~~C~ICL~~~~~------~-~~lr~LpC~H~FH~~CId~WL 339 (359)
..|.||+..-.. + +-+.--.|+..||..|++...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChh
Confidence 358999876421 2 233334599999999998763
No 115
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=60.09 E-value=3.3 Score=28.29 Aligned_cols=44 Identities=16% Similarity=0.477 Sum_probs=28.9
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhh---cCCCCCcccc
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK---MNATCPLCKY 350 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~---~~~tCPlCR~ 350 (359)
.=+||-..+.++..+.--.|+..||..|+.-=-. .+-.||.|+.
T Consensus 5 ~~C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 5 VTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp BCSTTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred eEEEeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 3458887765444444445999999999974322 2347999975
No 116
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=56.89 E-value=12 Score=29.68 Aligned_cols=44 Identities=25% Similarity=0.559 Sum_probs=28.1
Q ss_pred CCCccccccCCCccCCCceEEc---CCCceeChhhHHHhhhcCC----CCCcccccc
Q 018193 303 PEDAECCICLSSYEDGTELHAL---PCNHHFHSTCIVKWLKMNA----TCPLCKYNI 352 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~L---pC~H~FH~~CId~WL~~~~----tCPlCR~~I 352 (359)
.++..|.+|.+ .+ ++..= .|...||..|++ |.... .||.|+-.+
T Consensus 13 ~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 45667999983 23 33322 377999999998 54322 488765443
No 117
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=56.09 E-value=2.8 Score=29.96 Aligned_cols=42 Identities=26% Similarity=0.638 Sum_probs=25.2
Q ss_pred ccccccCCCccCCCceEEcC--CC-ceeChhhHHHhhhc----CCCCCcccc
Q 018193 306 AECCICLSSYEDGTELHALP--CN-HHFHSTCIVKWLKM----NATCPLCKY 350 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~Lp--C~-H~FH~~CId~WL~~----~~tCPlCR~ 350 (359)
...+||-... .++.+.-=. |. ..||..|+. |.. +-.||.|+.
T Consensus 11 ~~yC~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYCLCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEETTTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEEECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3444998753 343222223 44 899999998 332 226999965
No 118
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=53.89 E-value=8.4 Score=27.75 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=21.4
Q ss_pred CCCCccccccCCCccCCCceEEcCCCceeCh-hhHHHhhhcCCCCCccc
Q 018193 302 LPEDAECCICLSSYEDGTELHALPCNHHFHS-TCIVKWLKMNATCPLCK 349 (359)
Q Consensus 302 ~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~-~CId~WL~~~~tCPlCR 349 (359)
..+-..|..|-..+.++. .. ..=+..|+. .|-.+ .-...|--|.
T Consensus 24 H~~CF~C~~C~~~L~~~~-~~-~~~g~~yC~~~cy~~--~f~~~C~~C~ 68 (76)
T 1iml_A 24 HRPCLKCEKCGKTLTSGG-HA-EHEGKPYCNHPCYSA--MFGPKGFGRG 68 (76)
T ss_dssp ETTTCBCTTTCCBCCTTT-EE-EETTEEEETTTHHHH--HSSCCCSSCC
T ss_pred cCCCCCccccCccCCCCc-eE-CcCCeEeeCHHHHHH--HhCccCCCcC
Confidence 344456677766665542 11 123455555 45543 2234465554
No 119
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.27 E-value=13 Score=27.37 Aligned_cols=41 Identities=22% Similarity=0.511 Sum_probs=29.5
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
....|.-|-..+.+.+.+. .-+..||.+|. +|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCC
Confidence 4467999999987776554 35788998883 47777776654
No 120
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.82 E-value=22 Score=26.03 Aligned_cols=40 Identities=23% Similarity=0.589 Sum_probs=30.2
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
....|.-|-..+.+++.+.. -+..||.+| .+|-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 34579999999987776654 478899888 35888887764
No 121
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.81 E-value=18 Score=25.88 Aligned_cols=40 Identities=15% Similarity=0.453 Sum_probs=29.7
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
...|.-|-..+.+++.+. .-+..||.+|. +|-.|+.++..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccCC
Confidence 356999999988776554 45788998873 48888877754
No 122
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=51.68 E-value=5 Score=29.52 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=31.4
Q ss_pred CCccccccCCCccCCCc-eEEcCCCceeChhhHHHhhh-----cCCCCCccccc
Q 018193 304 EDAECCICLSSYEDGTE-LHALPCNHHFHSTCIVKWLK-----MNATCPLCKYN 351 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~-lr~LpC~H~FH~~CId~WL~-----~~~tCPlCR~~ 351 (359)
+...-+||-..+.++.. +.--.|.-.||..|+.---. ..-.||.|+..
T Consensus 8 ~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34456699887764433 33334999999999964321 23469999754
No 123
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=49.41 E-value=14 Score=30.40 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=29.7
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhh------hc-C----CCCCccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWL------KM-N----ATCPLCKYN 351 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL------~~-~----~tCPlCR~~ 351 (359)
..+..|.||-+. ++-+--=.|-..||.+||++=+ +. + =.|++|+-.
T Consensus 55 g~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 455679999864 3221111378999999999742 22 1 269999653
No 124
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=48.94 E-value=2.9 Score=33.46 Aligned_cols=47 Identities=23% Similarity=0.490 Sum_probs=31.2
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhhcCC----CCCccccccc
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNA----TCPLCKYNIL 353 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~----tCPlCR~~I~ 353 (359)
.|.||-..-.+++.+.--.|...||..|+++=|.... .||.|+....
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 5788877644444333335899999999996444322 4999976543
No 125
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=48.42 E-value=4.5 Score=31.97 Aligned_cols=46 Identities=26% Similarity=0.498 Sum_probs=29.2
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcC----CCCCccccc
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMN----ATCPLCKYN 351 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~----~tCPlCR~~ 351 (359)
..|.+|-..-++...+.--.|...||..|+++=|... -.||.|+.-
T Consensus 55 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 55 KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred CcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 3577777654333333333489999999998755432 259988653
No 126
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=45.98 E-value=6.8 Score=28.69 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=12.1
Q ss_pred HHHhhhcCCCCCcccccccC
Q 018193 335 IVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 335 Id~WL~~~~tCPlCR~~I~~ 354 (359)
+|+||..--.||.||.++..
T Consensus 1 md~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 1 MDTKLLDILACPICKGPLKL 20 (69)
T ss_dssp --CCGGGTCCCTTTCCCCEE
T ss_pred CChHHHhheeCCCCCCcCeE
Confidence 35566666677777776643
No 127
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=44.59 E-value=21 Score=29.82 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=31.2
Q ss_pred CCCccccccCCCccCCCceEEcCCCceeChhhHHHhhh---------c--CCCCCccccc
Q 018193 303 PEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK---------M--NATCPLCKYN 351 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~---------~--~~tCPlCR~~ 351 (359)
..+..|.+|-+. |+-+--=.|-..||..||++=+. . .=.||.|+..
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 456789999863 43332224889999999997653 1 1169999753
No 128
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=44.12 E-value=29 Score=26.68 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=34.1
Q ss_pred CCccccccCCCcc---CCCceEEc-CCCceeChhhHHHhh-hcCCCCCccccccc
Q 018193 304 EDAECCICLSSYE---DGTELHAL-PCNHHFHSTCIVKWL-KMNATCPLCKYNIL 353 (359)
Q Consensus 304 ~~~~C~ICL~~~~---~~~~lr~L-pC~H~FH~~CId~WL-~~~~tCPlCR~~I~ 353 (359)
+...|.||=++.. +++....- -|+--.+..|.+-=. +-++.||-|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4468999999875 33321111 277778999988544 45789999988764
No 129
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=43.78 E-value=30 Score=25.79 Aligned_cols=50 Identities=14% Similarity=0.372 Sum_probs=32.0
Q ss_pred CCccccccCCCccCCCceE-EcCCCceeChhhHHHhhhc--------CCCCCccccccc
Q 018193 304 EDAECCICLSSYEDGTELH-ALPCNHHFHSTCIVKWLKM--------NATCPLCKYNIL 353 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr-~LpC~H~FH~~CId~WL~~--------~~tCPlCR~~I~ 353 (359)
+...|.+|-..|.--..-. --.||++|+..|....... .-.|-.|-..+.
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 3467999999997543211 2249999999998775422 125666655443
No 130
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=43.76 E-value=23 Score=25.73 Aligned_cols=31 Identities=23% Similarity=0.618 Sum_probs=24.9
Q ss_pred CCCccccccCCCccCCCceEEcCC-CceeChhhHHH
Q 018193 303 PEDAECCICLSSYEDGTELHALPC-NHHFHSTCIVK 337 (359)
Q Consensus 303 ~~~~~C~ICL~~~~~~~~lr~LpC-~H~FH~~CId~ 337 (359)
++..-|+||.++ ..+|-+.| +-+|+..|..+
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHH
Confidence 345679999887 56899999 79999999655
No 131
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=42.72 E-value=5.7 Score=28.95 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=11.1
Q ss_pred HHhhhcCCCCCccccccc
Q 018193 336 VKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 336 d~WL~~~~tCPlCR~~I~ 353 (359)
|+||..--.||.||.++.
T Consensus 4 d~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLR 21 (67)
T ss_dssp CGGGTCCCBCTTTCCBCE
T ss_pred CHHHHHHhCCCCCCCcCe
Confidence 456666666777766654
No 132
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.97 E-value=8.5 Score=28.07 Aligned_cols=44 Identities=25% Similarity=0.501 Sum_probs=26.1
Q ss_pred ccccccCCCccCCCceEEcCCC---ceeChhhHHHhhhc----CCCCCcccccc
Q 018193 306 AECCICLSSYEDGTELHALPCN---HHFHSTCIVKWLKM----NATCPLCKYNI 352 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~---H~FH~~CId~WL~~----~~tCPlCR~~I 352 (359)
..-+||-... +++.+.--.|+ ..||..|+. |.. .-.||.|+...
T Consensus 6 ~~yC~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 6 SGYCICNQVS-YGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCSTTSCCC-CSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred CeEEEcCCCC-CCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 3444787763 34333322343 789999997 322 22599997654
No 133
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=39.11 E-value=9.6 Score=30.25 Aligned_cols=24 Identities=25% Similarity=0.661 Sum_probs=16.0
Q ss_pred CCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 325 PCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 325 pC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
.||+.| .+=+.....||.|+..=.
T Consensus 72 ~CG~~F-----~~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVF-----KAEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBC-----CCCSSCCSSCSSSCCCCB
T ss_pred hCcCee-----cccCCCCCCCcCCCCCcc
Confidence 489999 122344568999987543
No 134
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=38.84 E-value=25 Score=24.46 Aligned_cols=42 Identities=19% Similarity=0.563 Sum_probs=30.1
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
...|.-|-..+..++.+.. .=+..||.+|. +|-.|+.++..+
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 3579999999887765432 35778998885 577887776543
No 135
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=38.81 E-value=18 Score=35.00 Aligned_cols=46 Identities=20% Similarity=0.439 Sum_probs=29.7
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-----CCCCCcccccccC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-----NATCPLCKYNILK 354 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-----~~tCPlCR~~I~~ 354 (359)
..|+|-...+.. .+|-..|.|.-|.+ ++.||.. .-.||+|.+.+..
T Consensus 250 L~CPlS~~ri~~--PvRg~~C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSINCKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp SBCTTTSSBCSS--EEEETTCCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred ecCCCccccccc--cCcCCcCCCcceEC-HHHHHHHhhcCCceeCCCCCcccCH
Confidence 469987777654 46888899963222 2345543 2379999887744
No 136
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.55 E-value=34 Score=24.67 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=28.0
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
....|.-|-..+.+. . ...-+..||.+|. +|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~-~--~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV-F--VKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSS-C--EECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCc-E--EEECcceeCcCcC--------eeCCCCCCCC
Confidence 346799999988763 3 3346789999884 5778877654
No 137
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=37.28 E-value=20 Score=34.56 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=29.9
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhc-----CCCCCcccccccCC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKM-----NATCPLCKYNILKG 355 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~-----~~tCPlCR~~I~~~ 355 (359)
..|+|=...+.. .+|-..|.|.=|.+ ++.||.. .-.||+|.+.+..+
T Consensus 216 L~CPlS~~ri~~--P~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSS--EEEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceecc--CCcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHH
Confidence 469987777654 46788899862221 3445532 23799999877543
No 138
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=36.92 E-value=3.1 Score=26.31 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=10.4
Q ss_pred CccccccCCCccCCC
Q 018193 305 DAECCICLSSYEDGT 319 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~ 319 (359)
...|+||+.++...+
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 466888888776544
No 139
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=35.99 E-value=58 Score=21.56 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=9.7
Q ss_pred hHHHHHHHHHhHhhhhhc
Q 018193 115 QCLVHVVLVWMEYRRRNT 132 (359)
Q Consensus 115 ~c~~~~~~~~~~yr~r~~ 132 (359)
-.++.+.+++|-|+||++
T Consensus 22 ~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 22 LLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhhhH
Confidence 334445555666666655
No 140
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.62 E-value=32 Score=24.19 Aligned_cols=39 Identities=21% Similarity=0.600 Sum_probs=25.9
Q ss_pred ccccccCCCccC--CCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 306 AECCICLSSYED--GTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 306 ~~C~ICL~~~~~--~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
..|.-|-..+.+ ++++. ..-+..||.+|. +|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~-~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYI-SFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCE-ECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceE-EECCcccCcccC--------EeccCCCcCC
Confidence 468888888875 33322 235788888874 5777877664
No 141
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=34.78 E-value=21 Score=29.39 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=24.5
Q ss_pred CCccccccCCCcc--CCCceEEcCCCceeChhhHH
Q 018193 304 EDAECCICLSSYE--DGTELHALPCNHHFHSTCIV 336 (359)
Q Consensus 304 ~~~~C~ICL~~~~--~~~~lr~LpC~H~FH~~CId 336 (359)
++..|.+|...|. .+....-..|.|.++..|=.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4578999999993 34444455599999999955
No 142
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.30 E-value=87 Score=22.92 Aligned_cols=41 Identities=20% Similarity=0.375 Sum_probs=29.1
Q ss_pred CCccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 304 EDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
....|.-|-..+.+ +.+ ..-+..||.+|. +|-.|+..|..+
T Consensus 24 ~~~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV--KARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE--ESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-cEE--EECCceECccCC--------EecCCCCCCCCC
Confidence 34579999998886 333 346789999883 488888777543
No 143
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=34.07 E-value=12 Score=28.83 Aligned_cols=41 Identities=27% Similarity=0.463 Sum_probs=24.1
Q ss_pred cccccCCCccCCCceEEcCCC---ceeChhhHHHhhhc----CCCCCc-ccc
Q 018193 307 ECCICLSSYEDGTELHALPCN---HHFHSTCIVKWLKM----NATCPL-CKY 350 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~---H~FH~~CId~WL~~----~~tCPl-CR~ 350 (359)
..+||-.... ++.+.-=.|+ ..||..||. |.. +-.||. |+.
T Consensus 27 ~yCiC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 27 VYCFCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSTTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred cEEEeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 3449987532 3322211244 689999997 332 226999 974
No 144
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.97 E-value=31 Score=24.11 Aligned_cols=38 Identities=21% Similarity=0.549 Sum_probs=24.0
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
..|.-|-..+.+ +.+. .-+..||.+|. +|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~-~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVIK--AMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SBCSSSCCBCCS-CCEE--ETTEEECTTTS--------BCSSSCCBCSS
T ss_pred CcCccCCCEecc-eEEE--ECcccccccCC--------EeCCCCCcCCC
Confidence 458888777763 3333 34677887774 47777766654
No 145
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.86 E-value=57 Score=22.70 Aligned_cols=38 Identities=18% Similarity=0.490 Sum_probs=19.6
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccc
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 352 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I 352 (359)
..|.-|-..+..++.+ ...=+..||.+|. +|-.|+.++
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L 43 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAG-VVALDRVFHVGCF--------VCSTCRAQL 43 (72)
T ss_dssp CCCSSSCSCCCSSSCC-EECSSSEECTTTC--------BCSSSCCBC
T ss_pred CCCccCCCccCCCceE-EEECCCeEcccCC--------cccccCCcC
Confidence 3466666666543221 1123566666652 366666555
No 146
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.81 E-value=36 Score=23.77 Aligned_cols=40 Identities=18% Similarity=0.430 Sum_probs=25.1
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
..|.-|-..+.+++++ ...-+..||.+|. +|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCccccCccE-EEECccccCcccC--------eECCCCCcCCC
Confidence 4588888877764332 2235677887773 47777766643
No 147
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=32.51 E-value=36 Score=24.63 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=23.8
Q ss_pred ccccccCCCccCCCceE-EcCCCceeChhhHHHhh
Q 018193 306 AECCICLSSYEDGTELH-ALPCNHHFHSTCIVKWL 339 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr-~LpC~H~FH~~CId~WL 339 (359)
..|.+|-..|.--..-. --.||++|+..|-...+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~ 46 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSI 46 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCeE
Confidence 58999999987432111 12499999999976543
No 148
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=32.51 E-value=20 Score=26.04 Aligned_cols=39 Identities=23% Similarity=0.559 Sum_probs=26.3
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
..|..|-..+.+++.+. .-+..||.+|. +|-.|+.++..
T Consensus 8 ~~C~~C~~~I~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 46 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQ--CDGRSFHRCCF--------LCMVCRKNLDS 46 (81)
T ss_dssp CBCSSSCCBCSSTTEEE--ETTEEEESSSE--------ECSSSCCEECS
T ss_pred CcCcCcCccccCceeEE--eCCcccccccC--------ccCCCCCCCCC
Confidence 46888888887666443 35778887774 36777766644
No 149
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.21 E-value=63 Score=23.83 Aligned_cols=40 Identities=23% Similarity=0.549 Sum_probs=27.3
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
...|.-|-..+.+.+.+ ..-+..||.+|. +|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISCF--------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTTC--------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCCC--------eeCCCCCCCCC
Confidence 45688888888776644 356788888773 36666666544
No 150
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.93 E-value=49 Score=23.75 Aligned_cols=41 Identities=27% Similarity=0.496 Sum_probs=28.3
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
..|.-|-..+..++.+. ..=+..||.+|. +|-.|+.++..+
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEE-EECccccccccC--------chhhCCCccCCC
Confidence 46999988888665532 234788898874 477787776543
No 151
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.82 E-value=44 Score=24.04 Aligned_cols=38 Identities=21% Similarity=0.635 Sum_probs=24.9
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
..|.-|-..+. ++.+. .-+..||.+|. +|-.|+.++..
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTTS--------SCSSSCCCCCS
T ss_pred CcCccccCEec-cceEE--ECCceeCccCC--------ccccCCCCCCC
Confidence 36888988887 33333 35788888773 36666666544
No 152
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.61 E-value=47 Score=23.12 Aligned_cols=40 Identities=25% Similarity=0.453 Sum_probs=25.6
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
..|.-|-..+.+++.+. ..-+..||.+|. +|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKM-EYKGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEE-EETTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEE-EECcCeecccCC--------cccccCCccCC
Confidence 35888888887654322 224677887773 47777766654
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.40 E-value=28 Score=30.64 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=25.0
Q ss_pred CccccccCCCccCCCceE-EcCCCceeChhhHHHhh
Q 018193 305 DAECCICLSSYEDGTELH-ALPCNHHFHSTCIVKWL 339 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr-~LpC~H~FH~~CId~WL 339 (359)
+..|.+|-..|.--..-. --.||++||..|-....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 468999999986432112 22499999999987654
No 154
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=31.39 E-value=21 Score=25.30 Aligned_cols=42 Identities=21% Similarity=0.494 Sum_probs=28.3
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhh-cCCCCCcc
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK-MNATCPLC 348 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~-~~~tCPlC 348 (359)
..|--|...+.+....+--.|+++|+.+| |.... .=..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 35989998886543233334999999999 44443 23479988
No 155
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=31.27 E-value=13 Score=37.30 Aligned_cols=48 Identities=21% Similarity=0.464 Sum_probs=31.2
Q ss_pred CCccccccCCCccCCCc-eEEcCCCceeChhhHHHhhh-----cCCCCCccccc
Q 018193 304 EDAECCICLSSYEDGTE-LHALPCNHHFHSTCIVKWLK-----MNATCPLCKYN 351 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~-lr~LpC~H~FH~~CId~WL~-----~~~tCPlCR~~ 351 (359)
.+...|||-..+.++.. +..-.|.-.||..|+.-=-. .+-.||.|+..
T Consensus 35 ~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 35 PPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 34456699988764443 33334999999999963222 12379999753
No 156
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=31.20 E-value=7.2 Score=28.46 Aligned_cols=15 Identities=20% Similarity=0.271 Sum_probs=6.7
Q ss_pred hhhcCCCCCcccccc
Q 018193 338 WLKMNATCPLCKYNI 352 (359)
Q Consensus 338 WL~~~~tCPlCR~~I 352 (359)
||..--.||.||.++
T Consensus 4 ~LL~iL~CP~ck~~L 18 (68)
T 2jr6_A 4 KFLDILVCPVTKGRL 18 (68)
T ss_dssp SSSCCCBCSSSCCBC
T ss_pred HHhhheECCCCCCcC
Confidence 333334455555444
No 157
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=30.96 E-value=40 Score=25.45 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=25.4
Q ss_pred CCccccccCCCccCCCceE-EcCCCceeChhhHHHhh
Q 018193 304 EDAECCICLSSYEDGTELH-ALPCNHHFHSTCIVKWL 339 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr-~LpC~H~FH~~CId~WL 339 (359)
+...|.+|-..|.--..-. --.||++|+..|....+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSA 44 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCce
Confidence 4457999999987543211 22499999999987654
No 158
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.79 E-value=52 Score=23.24 Aligned_cols=41 Identities=17% Similarity=0.523 Sum_probs=27.4
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
...|.-|-..+..++.+.. .-+..||.+|. +|-.|+.++..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEE-eCccEeccccC--------eECCCCCCCCC
Confidence 3569999888875544321 24778888773 47777776654
No 159
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=30.66 E-value=7.9 Score=27.09 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=15.2
Q ss_pred HHHhhhcCCCCCcccccccC
Q 018193 335 IVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 335 Id~WL~~~~tCPlCR~~I~~ 354 (359)
+|+||..--.||.||.++..
T Consensus 3 ~d~~lL~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 3 LEAGLLEILACPACHAPLEE 22 (56)
T ss_dssp CCCSCTTSCCCSSSCSCEEE
T ss_pred CCHHHHhheeCCCCCCccee
Confidence 45677777789999998643
No 160
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.37 E-value=28 Score=25.10 Aligned_cols=37 Identities=24% Similarity=0.521 Sum_probs=21.0
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
.|.-|-..+. ++.+ ..-+..||.+|. +|-.|+.++..
T Consensus 17 ~C~~C~~~I~-~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 17 FCHGCSLLMT-GPFM--VAGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp BCTTTCCBCC-SCCB--CCTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred cCccCCCCcC-ceEE--EECCceeccccC--------CccCCCCccCC
Confidence 4777777666 2222 234667776663 36666666643
No 161
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=29.42 E-value=45 Score=24.69 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=24.8
Q ss_pred CccccccCCCccCCCceEE-cCCCceeChhhHHHhh
Q 018193 305 DAECCICLSSYEDGTELHA-LPCNHHFHSTCIVKWL 339 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~-LpC~H~FH~~CId~WL 339 (359)
...|.+|-..|.--..-.- -.||++|+..|....+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCee
Confidence 3579999999974322112 2499999999987654
No 162
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.75 E-value=61 Score=23.85 Aligned_cols=39 Identities=21% Similarity=0.471 Sum_probs=27.3
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
...|.-|-..+. ++.+ ..-+..||.+|. +|-.|+.+|..
T Consensus 25 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFL--VALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEE--EETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEE--EECCccccccCC--------ccCCCCCCCCC
Confidence 356999998885 3333 346889998874 57888877653
No 163
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=28.23 E-value=13 Score=22.31 Aligned_cols=13 Identities=31% Similarity=0.904 Sum_probs=8.8
Q ss_pred CCCCCcccccccC
Q 018193 342 NATCPLCKYNILK 354 (359)
Q Consensus 342 ~~tCPlCR~~I~~ 354 (359)
+.+||.|+...++
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3468888876553
No 164
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.19 E-value=7.2 Score=28.46 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=7.1
Q ss_pred hhhcCCCCCcccccc
Q 018193 338 WLKMNATCPLCKYNI 352 (359)
Q Consensus 338 WL~~~~tCPlCR~~I 352 (359)
||..--.||.||.++
T Consensus 4 ~LL~iL~CP~ck~~L 18 (68)
T 2hf1_A 4 KFLEILVCPLCKGPL 18 (68)
T ss_dssp CCEEECBCTTTCCBC
T ss_pred HHhhheECCCCCCcC
Confidence 333344455555544
No 165
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=28.06 E-value=7.8 Score=28.44 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=6.1
Q ss_pred hhcCCCCCcccccc
Q 018193 339 LKMNATCPLCKYNI 352 (359)
Q Consensus 339 L~~~~tCPlCR~~I 352 (359)
|..--.||.||.++
T Consensus 5 LL~iL~CP~ck~~L 18 (70)
T 2js4_A 5 LLDILVCPVCKGRL 18 (70)
T ss_dssp CCCCCBCTTTCCBE
T ss_pred HhhheECCCCCCcC
Confidence 33333455554443
No 166
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=28.00 E-value=38 Score=25.63 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=25.5
Q ss_pred CccccccCCCccCCCc-eEEcCCCceeChhhHHHhh
Q 018193 305 DAECCICLSSYEDGTE-LHALPCNHHFHSTCIVKWL 339 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~-lr~LpC~H~FH~~CId~WL 339 (359)
...|.+|...|.--.. -.--.||++|+..|.....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3579999999974322 1223499999999988765
No 167
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=27.43 E-value=31 Score=27.45 Aligned_cols=26 Identities=27% Similarity=0.678 Sum_probs=17.8
Q ss_pred ceEEcCCCceeChhhHHHhhhcCC-CCCccccc
Q 018193 320 ELHALPCNHHFHSTCIVKWLKMNA-TCPLCKYN 351 (359)
Q Consensus 320 ~lr~LpC~H~FH~~CId~WL~~~~-tCPlCR~~ 351 (359)
..+-..|||.|-.. .... .||.|..+
T Consensus 73 ~~~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred eEEcCCCCCEEeCC------CCCCCcCccccCC
Confidence 34455688888862 3356 79999765
No 168
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.38 E-value=37 Score=30.20 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=31.8
Q ss_pred CccccccCCCccCCCce-EEcCCCceeChhhHHHhhhc--------CCCCCccccccc
Q 018193 305 DAECCICLSSYEDGTEL-HALPCNHHFHSTCIVKWLKM--------NATCPLCKYNIL 353 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~l-r~LpC~H~FH~~CId~WL~~--------~~tCPlCR~~I~ 353 (359)
+..|.+|-..|.--..- .--.||++|+..|-...... ...|-.|-..+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 45899999999744221 22249999999998866422 124766755443
No 169
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=26.80 E-value=35 Score=27.00 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=21.5
Q ss_pred ccCCCCccccccCCCccCCCceEEcCCCceeChhhHHHhh
Q 018193 300 ILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWL 339 (359)
Q Consensus 300 ~~~~~~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL 339 (359)
....+-..|..|-..+..++..... =+..|+..|..+.+
T Consensus 31 ~~H~~CF~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 31 VYHLECFKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEWT 69 (123)
T ss_dssp CCCTTTCBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHHH
T ss_pred ccccccCccccCCCCCCCCCcEEee-CCEEEcHHHhHHHh
Confidence 3344555677776666544433222 35666666666655
No 170
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.76 E-value=39 Score=27.27 Aligned_cols=34 Identities=21% Similarity=0.467 Sum_probs=24.2
Q ss_pred ccccccCCCccCCCce-EEcCCCceeChhhHHHhh
Q 018193 306 AECCICLSSYEDGTEL-HALPCNHHFHSTCIVKWL 339 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~l-r~LpC~H~FH~~CId~WL 339 (359)
..|.+|-..|.--..- .--.||++|+..|.....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 5799999999743211 122499999999977654
No 171
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.73 E-value=20 Score=25.21 Aligned_cols=38 Identities=21% Similarity=0.489 Sum_probs=28.1
Q ss_pred CccccccCCCccCCCceEEcC-----CCceeChhhHHHhhhcC
Q 018193 305 DAECCICLSSYEDGTELHALP-----CNHHFHSTCIVKWLKMN 342 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~Lp-----C~H~FH~~CId~WL~~~ 342 (359)
-..|+-|...++.++.-..+. |+|.|+-.|..+|-...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 356888888888776544442 77999999999997553
No 172
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.60 E-value=80 Score=21.76 Aligned_cols=37 Identities=19% Similarity=0.589 Sum_probs=23.3
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
..|.-|-..+.++ . ...-+..||.+|. +|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~-~--~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTG-G--VTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSS-E--EESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeeccc-e--EEECccccCCCCC--------ccCCCCCcCC
Confidence 4577887777643 2 2345677887763 4777776664
No 173
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.58 E-value=54 Score=24.31 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=24.2
Q ss_pred CccccccCCCccCCCceE-EcCCCceeChhhHHHhh
Q 018193 305 DAECCICLSSYEDGTELH-ALPCNHHFHSTCIVKWL 339 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr-~LpC~H~FH~~CId~WL 339 (359)
...|.+|-..|.--..-. --.||++|+..|...-+
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~ 49 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKV 49 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCCce
Confidence 457999999996432111 12499999999977543
No 174
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.30 E-value=41 Score=28.08 Aligned_cols=39 Identities=18% Similarity=0.535 Sum_probs=21.5
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
.|..|-..+..++.+. ..-++.||.+|. +|-.|+..+..
T Consensus 67 ~C~~C~~~I~~~~~v~-~a~~~~~H~~CF--------~C~~C~~~L~~ 105 (169)
T 2rgt_A 67 KCAACQLGIPPTQVVR-RAQDFVYHLHCF--------ACVVCKRQLAT 105 (169)
T ss_dssp BCTTTCCBCCTTSEEE-EETTEEEEGGGC--------BCTTTCCBCCT
T ss_pred cccccccccCCCcEEE-EcCCceEeeCCC--------cCCCCCCCCCC
Confidence 4666666555443321 134666777663 56666666543
No 175
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=26.11 E-value=94 Score=20.56 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=9.0
Q ss_pred HHHHHHHHhHhhhhhcc
Q 018193 117 LVHVVLVWMEYRRRNTR 133 (359)
Q Consensus 117 ~~~~~~~~~~yr~r~~~ 133 (359)
++.+.+++|-|+||+++
T Consensus 23 v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 23 LVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 33444555566665553
No 176
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=25.63 E-value=1.5e+02 Score=22.28 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=28.5
Q ss_pred CCccccccCCCccCCCceEEcC--CCceeChhhHHHhhhc
Q 018193 304 EDAECCICLSSYEDGTELHALP--CNHHFHSTCIVKWLKM 341 (359)
Q Consensus 304 ~~~~C~ICL~~~~~~~~lr~Lp--C~H~FH~~CId~WL~~ 341 (359)
....|.+|.+.+|+.. ..+-| =.|.|+..|-..-++.
T Consensus 14 a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 3457999999998863 34444 3699999999999875
No 177
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=25.23 E-value=33 Score=28.64 Aligned_cols=28 Identities=18% Similarity=0.435 Sum_probs=17.9
Q ss_pred EEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 322 HALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 322 r~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
+...|||.|-.. .....||.|..++.+.
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVKLI 161 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEEEC
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcceeC
Confidence 444588888643 2234799998876443
No 178
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.40 E-value=54 Score=23.25 Aligned_cols=9 Identities=22% Similarity=0.467 Sum_probs=4.1
Q ss_pred ccccCCCcc
Q 018193 308 CCICLSSYE 316 (359)
Q Consensus 308 C~ICL~~~~ 316 (359)
|.-|-..+.
T Consensus 8 C~~C~~~I~ 16 (73)
T 1wig_A 8 CDSCEKYIT 16 (73)
T ss_dssp CSSSCCCCS
T ss_pred cccCCCEec
Confidence 444444443
No 179
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=24.28 E-value=11 Score=29.75 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=25.1
Q ss_pred ccccCCCccCCCceEEcC-CCceeChhhHHHhhhc--------CCCCCcccc
Q 018193 308 CCICLSSYEDGTELHALP-CNHHFHSTCIVKWLKM--------NATCPLCKY 350 (359)
Q Consensus 308 C~ICL~~~~~~~~lr~Lp-C~H~FH~~CId~WL~~--------~~tCPlCR~ 350 (359)
|..|..+++.++.+.+-. |.+.||..|+..-... +-.||.|+.
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 444444444444444444 9999999998753211 125999975
No 180
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.10 E-value=69 Score=22.67 Aligned_cols=39 Identities=21% Similarity=0.634 Sum_probs=25.5
Q ss_pred ccccccCCCccC--CCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 306 AECCICLSSYED--GTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 306 ~~C~ICL~~~~~--~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
..|.-|-..+.+ +++. ...-+..||.+|. +|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCcee-EEECCcccCcccC--------ChhhCCCcCC
Confidence 458888888875 3232 2335788888873 4777776664
No 181
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.34 E-value=39 Score=28.40 Aligned_cols=46 Identities=20% Similarity=0.505 Sum_probs=31.6
Q ss_pred CCccccccCCCc--cCCCceEEcCCCceeChhhHHHhhhcCC--CCCcccc
Q 018193 304 EDAECCICLSSY--EDGTELHALPCNHHFHSTCIVKWLKMNA--TCPLCKY 350 (359)
Q Consensus 304 ~~~~C~ICL~~~--~~~~~lr~LpC~H~FH~~CId~WL~~~~--tCPlCR~ 350 (359)
++..|.+|...| -.+....-..|+|.++..|= .|+.... .|=+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 457899999976 45555556669999999997 3544333 3666643
No 182
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.94 E-value=53 Score=26.15 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=29.6
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
...|.-|-..+.+...+. .-+..||.+| .+|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEcccc--------cCcCcCCCccc
Confidence 357999999988664344 3588999988 45888988875
No 183
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=22.82 E-value=27 Score=27.40 Aligned_cols=12 Identities=25% Similarity=0.971 Sum_probs=10.4
Q ss_pred eChhhHHHhhhc
Q 018193 330 FHSTCIVKWLKM 341 (359)
Q Consensus 330 FH~~CId~WL~~ 341 (359)
||..|+.+|++.
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999853
No 184
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.54 E-value=75 Score=21.88 Aligned_cols=37 Identities=16% Similarity=0.541 Sum_probs=23.8
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
..|.-|-..+.+ +.+. .-+..||.+|. +|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~-~~~~--a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGIT--YQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEE--ETTEEECTTTT--------BCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEE--ECccccccCcC--------EECCCCCCCC
Confidence 458888877764 3333 34677887773 4777777664
No 185
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=22.49 E-value=28 Score=27.29 Aligned_cols=11 Identities=45% Similarity=1.223 Sum_probs=10.1
Q ss_pred eChhhHHHhhh
Q 018193 330 FHSTCIVKWLK 340 (359)
Q Consensus 330 FH~~CId~WL~ 340 (359)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 186
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=22.39 E-value=19 Score=29.15 Aligned_cols=44 Identities=23% Similarity=0.522 Sum_probs=28.0
Q ss_pred ccccccCCCccCCCce-EEcCCCceeChhhHHHhhhcCCCCCccc
Q 018193 306 AECCICLSSYEDGTEL-HALPCNHHFHSTCIVKWLKMNATCPLCK 349 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~l-r~LpC~H~FH~~CId~WL~~~~tCPlCR 349 (359)
..|..|-..|.--..- .--.||.+|+..|..........|-.|-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 5799999998643211 2225999999999877655455566664
No 187
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=22.13 E-value=59 Score=22.24 Aligned_cols=38 Identities=21% Similarity=0.468 Sum_probs=25.2
Q ss_pred ccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 306 AECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 306 ~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
..|.-|-..+. ++ ....-+..||.+|. +|-.|+.++..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCC
Confidence 45888888777 33 23345778888773 47778777653
No 188
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.87 E-value=83 Score=22.59 Aligned_cols=39 Identities=18% Similarity=0.369 Sum_probs=24.3
Q ss_pred CccccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 305 DAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 305 ~~~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
...|.-|-..+. ++.+ ..-+..||.+| .+|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCC--------CEeCCCCCccCC
Confidence 346888887777 3322 23567788776 357777766653
No 189
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=21.77 E-value=16 Score=26.01 Aligned_cols=48 Identities=25% Similarity=0.564 Sum_probs=31.1
Q ss_pred CCCccccccCC-CccCCCceEEcCCCceeChhhHHHhhhc-CC---CCCcccc
Q 018193 303 PEDAECCICLS-SYEDGTELHALPCNHHFHSTCIVKWLKM-NA---TCPLCKY 350 (359)
Q Consensus 303 ~~~~~C~ICL~-~~~~~~~lr~LpC~H~FH~~CId~WL~~-~~---tCPlCR~ 350 (359)
.+...|.||+. +|.|+-.-.---|.-.|+..|=.+|-.+ +. .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 45678999996 4666644344447777888887777433 33 3777764
No 190
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=21.16 E-value=64 Score=27.38 Aligned_cols=40 Identities=23% Similarity=0.561 Sum_probs=25.6
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCcccccccCC
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 355 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 355 (359)
.|..|-..+...+.+. ..-++.||.+| .+|-.|+..+..+
T Consensus 71 ~C~~C~~~I~~~e~~i-~a~~~~~H~~C--------F~C~~C~~~L~~g 110 (188)
T 1rut_X 71 ACSACGQSIPASELVM-RAQGNVYHLKC--------FTCSTCRNRLVPG 110 (188)
T ss_dssp ECTTTCCEECTTSEEE-EETTEEECGGG--------CBCTTTCCBCCTT
T ss_pred ccccCCCccccCcEEE-EcCCCEEeCCC--------CeECCCCCCCCCC
Confidence 5888887776554322 23578888887 3577777766543
No 191
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.02 E-value=83 Score=22.13 Aligned_cols=39 Identities=21% Similarity=0.542 Sum_probs=27.7
Q ss_pred ccccccCCCccC---C-CceEEcCCCceeChhhHHHhhhcCCCCCcccccccC
Q 018193 306 AECCICLSSYED---G-TELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 354 (359)
Q Consensus 306 ~~C~ICL~~~~~---~-~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 354 (359)
..|+-|-..+.+ + +.+. .=+..||.+| .+|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVA--YEGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEE--ETTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEE--ECcceeCccc--------CEehhcCCCCCC
Confidence 469999998885 2 3333 3478999888 358888887753
No 192
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=20.72 E-value=81 Score=21.02 Aligned_cols=14 Identities=43% Similarity=0.847 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 018193 221 FAIFCVVLACLIGI 234 (359)
Q Consensus 221 f~If~~~L~~ll~I 234 (359)
|+-||+++.|++.|
T Consensus 32 fvnfclilicllli 45 (52)
T 1fjk_A 32 FINFCLILIFLLLI 45 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666555544
No 193
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=20.39 E-value=47 Score=28.09 Aligned_cols=38 Identities=18% Similarity=0.548 Sum_probs=17.5
Q ss_pred cccccCCCccCCCceEEcCCCceeChhhHHHhhhcCCCCCccccccc
Q 018193 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 353 (359)
Q Consensus 307 ~C~ICL~~~~~~~~lr~LpC~H~FH~~CId~WL~~~~tCPlCR~~I~ 353 (359)
.|..|-..+..++.+. ..-++.||.+|. +|-.|+..+.
T Consensus 121 kC~~C~~~I~~~~~v~-~a~~~~~H~~CF--------~C~~C~~~L~ 158 (182)
T 2jtn_A 121 KCAACQLGIPPTQVVR-RAQDFVYHLHCF--------ACVVCKRQLA 158 (182)
T ss_dssp CCTTTCCCCCSSCCCC-EETTEECCTTTC--------CCTTTCCCCC
T ss_pred ccccCCCccCCCceEE-ecCCCCEEeCCC--------cCCCCCCCCC
Confidence 3555555544332211 123455555553 4556655554
Done!