BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018194
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 100/217 (46%), Gaps = 3/217 (1%)
Query: 70 PDFVDTFYNLVTDIYEWGWGQSFHF---SPSIPGKSHRDATRLHEEMAVDLIDVKAGDRI 126
P+ V Y+ TD + WG++ HF + S DAT + + L+DV++GDR+
Sbjct: 6 PEEVRQXYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEXIALLDVRSGDRV 65
Query: 127 LDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF 186
LDVGCG+G P +A V GI+I+ QVN+A AGL + + +PF
Sbjct: 66 LDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAXDLPF 125
Query: 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQ 246
ED FD +++E+ H P E RVL+PG ++V E KE VD +
Sbjct: 126 EDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFR 185
Query: 247 GIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKP 283
+L G+ Y A+ V V A+P
Sbjct: 186 AGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQARP 222
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN 180
K ++LD+ CGVGG + + VVG+ I+E + +AR + K +S E + G+
Sbjct: 37 KKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDXIRKAREYAKSR--ESNVEFIVGD 93
Query: 181 FLKMPFEDNHFDGAYSIEATCHAPKLE--DVYAEVFRVLKPGSLYVSY 226
K+ FED FD I++ H LE V+ EV RVLKP ++ Y
Sbjct: 94 ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIXY 141
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 71 DFVDTFYNLVTDIYEWGWGQSFH---FSPSIPGKSHRDAT-RLHEEMAVDLIDVKAGDRI 126
D D FY + WG G+ H + + R+A+ R E +A +L R
Sbjct: 30 DDSDRFY-----FHVWG-GEDIHVGLYKEPVDQDEIREASLRTDEWLASELAXTGVLQRQ 83
Query: 127 ---LDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK 183
LD+G G GG R + ++ + I Q R +N +AGL V G+FL+
Sbjct: 84 AKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE 143
Query: 184 MPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKP 219
+P EDN +D +S +A H+P V+ E RVLKP
Sbjct: 144 IPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKP 179
>pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Sam
pdb|4F85|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase
pdb|4F86|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|B Chain B, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|C Chain C, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|D Chain D, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|E Chain E, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|F Chain F, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|G Chain G, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|H Chain H, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|I Chain I, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|J Chain J, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|K Chain K, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|L Chain L, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
Length = 320
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 24/208 (11%)
Query: 44 AEEVEDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSH 103
A +++ YW RP ++ D VD Y+ + +G G H + PG
Sbjct: 46 ATPYQEDIARYWNNEARP---VNLRLGD-VDGLYH-----HHYGIGAVDHAALGDPGDGG 96
Query: 104 RDAT------RLHEEMAVDLID----VKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGI 151
+A RL A L+D V GD ++D GCG GG M + AH R V G+
Sbjct: 97 YEARLIAELHRLESAQAEFLLDHLGPVGPGDTLVDAGCGRGGSM--VMAHQRFGCKVEGV 154
Query: 152 TINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYA 211
T++ Q ++ G+D N L PFE +++ E++ + L DV+A
Sbjct: 155 TLSAAQAEFGNRRARELGIDDHVRSRVCNMLDTPFEKGTVAASWNNESSMYV-DLHDVFA 213
Query: 212 EVFRVLKPGSLYVSYEWVTTDKYEAENK 239
E R L+ G YV+ +Y +K
Sbjct: 214 EHSRFLRVGGRYVTVTGCWNPRYGQPSK 241
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 21/194 (10%)
Query: 98 IPGKSHRDATRLHEEMAV-------DLIDVKAGDRILDVGCGVGGPMRAIAAHS-RANVV 149
+ G S R+A RL E+ D + G ++L+ GCG+G +A ++ A +
Sbjct: 7 VHGYSEREALRLSEQAETLEKLLHHDTV-YPPGAKVLEAGCGIGAQTVILAKNNPDAEIT 65
Query: 150 GITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDV 209
I I+ + +AR + +K G+ ++ + + N +PFED+ FD + H E+
Sbjct: 66 SIDISPESLEKARENTEKNGIKNV-KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEA 124
Query: 210 YAEVFRVLKPGSLYVSYEWVTTDKY-EAENKEHVDI------IQGIERGDALPGLRSYAE 262
+ +VLKPG E Y E K+ ++ +Q +G++L G + Y
Sbjct: 125 LKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYXKGNSLVGRQIYPL 184
Query: 263 ITEIAKRVGFEVVK 276
+ E GFE ++
Sbjct: 185 LQE----SGFEKIR 194
>pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
Length = 312
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 6/199 (3%)
Query: 44 AEEVEDNYKEYWKFFKRPKETTKEKVPDFVDTFYNL-VTDIYEWGWGQSFHFSPSIPGKS 102
A +++ YW RP V Y + D G + + + +
Sbjct: 38 ATPYQEDIARYWNNEARPVNLRLGDVDGLYHHHYGIGPVDRAALGDPEHSEYEKKVIAEL 97
Query: 103 HRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNR 160
HR + E + L D ++D GCG GG M + AH R + V G+T++ Q +
Sbjct: 98 HRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSM--VMAHRRFGSRVEGVTLSAAQADF 155
Query: 161 ARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
++ +D N L PF+ +++ E+T + L D+++E R LK G
Sbjct: 156 GNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVG 214
Query: 221 SLYVSYEWVTTDKYEAENK 239
YV+ +Y +K
Sbjct: 215 GRYVTITGCWNPRYGQPSK 233
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 177
I++ ++LD+G G+GG I A+ GI I VN A N++ ++
Sbjct: 51 IELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMA---NERVSGNNKIIFE 107
Query: 178 CGNFLKMPFEDNHFDGAYSIEATCHAPKLED---VYAEVFRVLKPGSLYVSYEWVTTDK- 233
+ L F +N+FD YS +A H LE+ ++ + ++ LKP + ++ T+K
Sbjct: 108 ANDILTKEFPENNFDLIYSRDAILHLS-LENKNKLFQKCYKWLKPTGTLLITDYCATEKE 166
Query: 234 -YEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRL 292
++ E KE+V +R L + YA+I F+ V KDL+ +W +L
Sbjct: 167 NWDDEFKEYVK-----QRKYTLITVEEYADILTAC---NFKNVVSKDLS-----DYWNQL 213
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 177
I++ ++LD+G G+GG I A+ GI I VN A N++ ++
Sbjct: 51 IELNENSKVLDIGSGLGGGCXYINEKYGAHTHGIDICSNIVNXA---NERVSGNNKIIFE 107
Query: 178 CGNFLKMPFEDNHFDGAYSIEATCHAPKLED---VYAEVFRVLKPGSLYVSYEWVTTDK- 233
+ L F +N+FD YS +A H LE+ ++ + ++ LKP + ++ T+K
Sbjct: 108 ANDILTKEFPENNFDLIYSRDAILHLS-LENKNKLFQKCYKWLKPTGTLLITDYCATEKE 166
Query: 234 -YEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRL 292
++ E KE+V +R L + YA+I F+ V KDL+ +W +L
Sbjct: 167 NWDDEFKEYVK-----QRKYTLITVEEYADILTAC---NFKNVVSKDLS-----DYWNQL 213
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 177
I++ ++LD+G G+GG I A+ GI I VN A N++ ++
Sbjct: 51 IELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMA---NERVSGNNKIIFE 107
Query: 178 CGNFLKMPFEDNHFDGAYSIEATCHAPKLED---VYAEVFRVLKPGSLYVSYEWVTTDK- 233
+ L F +N+FD YS +A H LE+ ++ + ++ LKP + ++ T+K
Sbjct: 108 ANDILTKEFPENNFDLIYSRDAILHLS-LENKNKLFQKCYKWLKPTGTLLITDYCATEKE 166
Query: 234 -YEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRL 292
++ E KE+V +R L + YA+I F+ V KDL+ +W +L
Sbjct: 167 NWDDEFKEYVK-----QRKYTLITVEEYADILTAC---NFKNVVSKDLS-----DYWNQL 213
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS----LCE 175
++ D ILD+GCG G +A+ + V GI IN + A + GL+ E
Sbjct: 28 LQEDDEILDIGCGSGKISLELASKGYS-VTGIDINSEAIRLAETAARSPGLNQKTGGKAE 86
Query: 176 VVCGNFLKMPFEDNHFDGAYSIEATCHAPKLED---VYAEVFRVLKPGS-LYV 224
N + F D+ FD A P ++ + EVFRVLKPG+ LY+
Sbjct: 87 FKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYL 139
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL 182
G RI+D+GCG G R H + V+G+ ++E + RAR AG D+ +
Sbjct: 44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKXLARAR----AAGPDTGITYERADLD 99
Query: 183 KMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
K+ + FD AYS A + + ++ V + L PG +V
Sbjct: 100 KLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFV 141
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 177
I++ ++LD+G G+GG I A+ GI I VN A N++ ++
Sbjct: 51 IELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMA---NERVSGNNKIIFE 107
Query: 178 CGNFLKMPFEDNHFDGAYSIEATCHAPKLED---VYAEVFRVLKPGSLYVSYEWVTTDK- 233
+ L F +N+FD YS +A A LE+ ++ + ++ LKP + ++ T+K
Sbjct: 108 ANDILTKEFPENNFDLIYSRDAIL-ALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE 166
Query: 234 -YEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRL 292
++ E KE+V +R L + YA+I F+ V KDL+ +W +L
Sbjct: 167 NWDDEFKEYVK-----QRKYTLITVEEYADILTAC---NFKNVVSKDLS-----DYWNQL 213
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 125 RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM 184
R+LD+ CG G P +A VVG+ ++E + AR K+ L E + G+ L++
Sbjct: 44 RVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNLK--IEFLQGDVLEI 100
Query: 185 PFEDNHFDGAYSIEATCHAPKLED---VYAEVFRVLKPGSLYVS 225
F+ N FD +T ED ++++V LKPG ++++
Sbjct: 101 AFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 99 PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQ 157
P + +A ++A+D ++++ G +LD+GCG G MR A NV+G+T++E Q
Sbjct: 49 PDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQ 107
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 71 DFVDTFYNLVTD---IYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRIL 127
D D F+ L D Y + F P P + +A ++ +D +D+K G +L
Sbjct: 43 DVSDDFFALFQDPTRTYSCAY-----FEP--PELTLEEAQYAKVDLNLDKLDLKPGMTLL 95
Query: 128 DVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS 172
D+GCG G MR NV+G+T+++ Q AR A +D+
Sbjct: 96 DIGCGWGTTMRRAVERFDVNVIGLTLSKNQ--HARCEQVLASIDT 138
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 126 ILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP 185
+LD G G P +I GI I++ Q+ +A +++ + G+ K+P
Sbjct: 27 VLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK--LNISKGDIRKLP 84
Query: 186 FEDNHFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHV- 242
F+D YS H K +++ E+ RVLKPG L ++TT E +
Sbjct: 85 FKDESXSFVYSYGTIFHXRKNDVKEAIDEIKRVLKPGGL-ACINFLTTKDERYNKGEKIG 143
Query: 243 --DIIQGIERGDALPGLRSYAEITEIAK 268
+ +Q +ERG+ + + SY + E K
Sbjct: 144 EGEFLQ-LERGEKV--IHSYVSLEEADK 168
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Query: 114 AVDLID-VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS 172
A+ ID + I D+GCG GG +A H + GI + R + +K L +
Sbjct: 43 ALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQN 102
Query: 173 LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGS-LYVSYEWVTT 231
+ + G+ + FE + D +S E + E E LKPG L VS T
Sbjct: 103 RVKGIVGSMDDLSFEKDSLDLIWS-EGAIYNIGFERGLKEWRNYLKPGGYLAVSESVWFT 161
Query: 232 DKYEAE 237
D+ AE
Sbjct: 162 DQRPAE 167
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Query: 114 AVDLID-VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS 172
A+ ID + I D+GCG GG +A H + GI + R + +K L +
Sbjct: 38 ALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQN 97
Query: 173 LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGS-LYVSYEWVTT 231
+ + G+ + FE + D +S E + E E LKPG L VS T
Sbjct: 98 RVKGIVGSMDDLSFEKDSLDLIWS-EGAIYNIGFERGLKEWRNYLKPGGYLAVSESVWFT 156
Query: 232 DKYEAE 237
D+ AE
Sbjct: 157 DQRPAE 162
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC 174
++L+++ G I D+G G GG A+A G+ + Y V + + ++A +
Sbjct: 27 INLLNLPKGSVIADIGAGTGGYSVALANQ------GLFV--YAVEPSIVXRQQAVVHPQV 78
Query: 175 EVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSL 222
E G + D DG SI A H LE + E R+++ G++
Sbjct: 79 EWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEXQRIIRDGTI 126
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Query: 114 AVDLID-VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS 172
A+ ID + I D+GCG GG +A H V G+ ++ + +++GL +
Sbjct: 37 ALSFIDNLTEKSLIADIGCGTGGQTXVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQN 96
Query: 173 LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE--WVT 230
+ G+ +PF + D +S E + E E + LK G E W T
Sbjct: 97 RVTGIVGSXDDLPFRNEELDLIWS-EGAIYNIGFERGLNEWRKYLKKGGYLAVSECSWFT 155
Query: 231 TDK 233
++
Sbjct: 156 DER 158
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 104 RDATRLHE------EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQ 157
RD L E ++A+ ++++ G +LD+GCG G MR NVVG+T++E Q
Sbjct: 40 RDDMTLQEAQIAKIDLALGKLNLEPGMTLLDIGCGWGATMRRAIEKYDVNVVGLTLSENQ 99
Query: 158 VNRAR 162
+
Sbjct: 100 AGHVQ 104
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%)
Query: 127 LDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF 186
+D+G G G A+A S ++ + +++ A + A L+ ++V G+ +P
Sbjct: 48 IDIGSGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADANLNDRIQIVQGDVHNIPI 107
Query: 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
EDN+ D S + + + E++R+LK G
Sbjct: 108 EDNYADLIVSRGSVFFWEDVATAFREIYRILKSG 141
>pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From
Mycobacterium Tuberculosis
Length = 287
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQ 157
++A+ + ++ G +LD+GCG G MR A NVVG+T+++ Q
Sbjct: 54 DLALGKLGLQPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQ 99
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 8/137 (5%)
Query: 100 GKSHRDATRLHEEMAVDLIDVKAGD-RILDVGCGVGGPMRAIAAHSRANVVGITINEYQV 158
G +ATR AV I+ D +I D+GCG GG +A + + + GI + +
Sbjct: 27 GPGSPEATR----KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFI 82
Query: 159 NRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLK 218
+ KA + + G+ +PF++ D +S E + E E + LK
Sbjct: 83 EIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWS-EGAIYNIGFERGMNEWSKYLK 141
Query: 219 PGSLYVSYE--WVTTDK 233
G E W T+++
Sbjct: 142 KGGFIAVSEASWFTSER 158
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 8/137 (5%)
Query: 100 GKSHRDATRLHEEMAVDLIDVKAGD-RILDVGCGVGGPMRAIAAHSRANVVGITINEYQV 158
G +ATR AV I+ D +I D+GCG GG +A + + + GI + +
Sbjct: 33 GPGSPEATR----KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFI 88
Query: 159 NRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLK 218
+ KA + + G+ +PF++ D +S E + E E + LK
Sbjct: 89 EIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWS-EGAIYNIGFERGMNEWSKYLK 147
Query: 219 PGSLYVSYE--WVTTDK 233
G E W T+++
Sbjct: 148 KGGFIAVSEASWFTSER 164
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 18/121 (14%)
Query: 163 LHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSL 222
K AG+D +VV + +P D G + P V AE RVLKPG
Sbjct: 77 FRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGA 136
Query: 223 YV--------SYEWVTTDKYEAENKEHVDIIQG--IERGDALPGLRSYAEITEIAKRVGF 272
+ S EW +++ A E +G +ERG L+ E+ E +R+G
Sbjct: 137 LLEGWDQAEASPEWTLQERWRAFAAE-----EGFPVERGLHAKRLK---EVEEALRRLGL 188
Query: 273 E 273
+
Sbjct: 189 K 189
>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KP9|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KPH|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
Length = 287
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 104 RDATRLHE------EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQ 157
RD L E ++A+ + ++ G +LDVGCG G M NVVG+T+++ Q
Sbjct: 40 RDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQ 99
Query: 158 VNRAR 162
N +
Sbjct: 100 ANHVQ 104
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 94 FSPSIPGKSHRDATRLH---EEMAVDLIDVKAGDRILDVGCGVGG--PMRAIAAHSRANV 148
F PS K D +RL E + +K G +LDVG G G P + + V
Sbjct: 7 FDPS-KIKKLDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKV 65
Query: 149 VGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLED 208
I + E VN A K GL ++ EV+ K+P DN D + +
Sbjct: 66 YAIDVQEEMVNYAWEKVNKLGLKNV-EVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLK 124
Query: 209 VYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHV 242
E+ RV KP + +W ++ + E V
Sbjct: 125 FLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEV 158
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
VK +LDVGCG G + + + VG+ I+E + + + + L + G
Sbjct: 51 VKKEAEVLDVGCGDGYGTYKL-SRTGYKAVGVDISEVXIQKGKERGEGPDLS----FIKG 105
Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLK 218
+ +PFE+ F+ +I + + E+ RVLK
Sbjct: 106 DLSSLPFENEQFEAIXAINSLEWTEEPLRALNEIKRVLK 144
>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
Length = 287
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 104 RDATRLHE------EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQ 157
RD L E ++A+ + ++ G +LDVGCG G NVVG+T+++ Q
Sbjct: 40 RDDXTLQEAQIAKIDLALGKLGLQPGXTLLDVGCGWGATXXRAVEKYDVNVVGLTLSKNQ 99
Query: 158 VNRAR 162
N +
Sbjct: 100 ANHVQ 104
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Query: 113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS 172
+ + + +A R+LD+G G G A + + + +G+ + V A ++ G+++
Sbjct: 12 LXIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEXVEVASSFAQEKGVEN 70
Query: 173 LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
+ G +PF D+ FD A H + EV RVLK ++
Sbjct: 71 V-RFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 121
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
+K + +LDV G G A A + VV + E + AR + G + E V G
Sbjct: 35 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQV-EYVQG 92
Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
+ + PF D F A H P +E +RVLK G
Sbjct: 93 DAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG 133
>pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine.
pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine
Length = 433
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSL 173
A++ +DV+ DR+LD+ CG+G +A + A+VVG+ V + + + + GL ++
Sbjct: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNV 336
Query: 174 C---EVVCGNFLKMPFEDNHFD 192
E + + K P+ N FD
Sbjct: 337 TFYHENLEEDVTKQPWAKNGFD 358
>pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
Length = 241
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK 183
D ++D CGVGG A + V+ I I+ ++ AR + + G+ E +CG+FL
Sbjct: 80 DVVVDAFCGVGGNTIQFAL-TGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL 138
Query: 184 M 184
+
Sbjct: 139 L 139
>pdb|3EGI|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|D Chain D, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
Length = 206
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK 183
D ++D CGVGG A + V+ I I+ ++ AR + + G+ E +CG+FL
Sbjct: 45 DVVVDAFCGVGGNTIQFAL-TGXRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL 103
Query: 184 M 184
+
Sbjct: 104 L 104
>pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
Methyltransferase
Length = 433
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSL 173
A++ +DV+ DR+LD+ CG G +A + A+VVG+ V + + + + GL ++
Sbjct: 278 ALEWLDVQPEDRVLDLFCGXGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNV 336
Query: 174 C---EVVCGNFLKMPFEDNHFD 192
E + + K P+ N FD
Sbjct: 337 TFYHENLEEDVTKQPWAKNGFD 358
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNK 166
K GD +LD+GCG GG + G+ I E +N AR+ +
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRAR 108
>pdb|4G38|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein
Reveals The Mechanism For Coordinated Electron And
Proton Transfer
Length = 570
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN 238
NFL + F + I A KLE +A + R PG + + +W DK+ EN
Sbjct: 48 NFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGEN 106
>pdb|4G39|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein
Reveals The Mechanism For Coordinated Electron And
Proton Transfer
Length = 570
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN 238
NFL + F + I A KLE +A + R PG + + +W DK+ EN
Sbjct: 48 NFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGEN 106
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 20/107 (18%)
Query: 126 ILDVGCGVGGPMRAIA-AHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM 184
+LD+GCG G A A A G+ +++ + A K+ + C + ++
Sbjct: 89 VLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA---AKRYPQVTFC---VASSHRL 142
Query: 185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 231
PF D D I A C A E+ RV+KPG WV T
Sbjct: 143 PFSDTSXDAIIRIYAPCKA-------EELARVVKPGG------WVIT 176
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 97 SIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS---RANVVGITI 153
++PG RD + ++ + + ++LDVGCG G A A HS R + ++
Sbjct: 171 TLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSA 230
Query: 154 NEYQVNRARL 163
+ +RA L
Sbjct: 231 PAVEASRATL 240
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 80/217 (36%), Gaps = 27/217 (12%)
Query: 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD 171
E + L++ + G+ ILD+GCG G I A S A V+G + +AR + D
Sbjct: 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKI-AQSGAEVLGTDNAATXIEKARQNYPHLHFD 105
Query: 172 SLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS-YEWVT 230
V ++ D D +S + E A + + LK G +V+ +
Sbjct: 106 ----VADARNFRV---DKPLDAVFSNAXLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG 158
Query: 231 TDKYEAENKEHVDIIQGIERGDAL-----PGLRSYAEITEIAKRVGFEVVKEKDLAKPPA 285
KY E + GI AL P + Y I E + GF+V +P
Sbjct: 159 NIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILE---KQGFDVTYAALFNRP-- 213
Query: 286 QPWWTRLKMGRF--AYWRNHILVTILAALGIAPKGTV 320
T L G F A W L +G+ P V
Sbjct: 214 ----TTLAEGEFGXANWIQXFASAFL--VGLTPDQQV 244
>pdb|2R8W|A Chain A, The Crystal Structure Of Dihydrodipicolinate Synthase
(Atu0899) From Agrobacterium Tumefaciens Str. C58
pdb|2R8W|B Chain B, The Crystal Structure Of Dihydrodipicolinate Synthase
(Atu0899) From Agrobacterium Tumefaciens Str. C58
Length = 332
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 8 CTGALLAGGLYWFVCVLG----PAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFK 59
CT A LAGG W+ V G PA Q + A +G + A+ ++ ++ W FK
Sbjct: 228 CTDATLAGGDTWYSVVAGLLPVPALQLXRAAQ--AGNAEEAKRLDATFQPLWALFK 281
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 73 VDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEM-AVDLIDVKAGDRILDVGC 131
VD L ++ ++ + + P +PG + T L+ + +D +D+ G ++L++G
Sbjct: 23 VDRSLFLPENLKDYAYAHTHEALPILPG---INTTALNLGIFXLDELDLHKGQKVLEIGT 79
Query: 132 GVGGPMRAIAAHSRANVVGITINEYQVNRA 161
G+ G A+ A VV + INE N A
Sbjct: 80 GI-GYYTALIAEIVDKVVSVEINEKXYNYA 108
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 117 LIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR 162
L V+ G RI D+GCG G +A H V G+ ++E + A+
Sbjct: 28 LEQVEPGKRIADIGCGTGTATLLLADHY--EVTGVDLSEEXLEIAQ 71
>pdb|3LDU|A Chain A, The Crystal Structure Of A Possible Methylase From
Clostridium Difficile 630
Length = 385
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 140 IAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA 199
I S+ + G I+E ++ AR + + AG+D E G+ + ED + I
Sbjct: 252 IDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEF---GFIITN 308
Query: 200 TCHAPKLED------VYAEV---FRVLKPGSLYV--SYE 227
+ +LED +Y E+ FR LK S Y+ SYE
Sbjct: 309 PPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYE 347
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAI---AAHSRANVVGITINEYQVNRARLHN 165
L E D D A +LDVG G GG + AI A H R +V + RAR
Sbjct: 169 LAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELA---GPAERARRRF 225
Query: 166 KKAGLDSLCEVVCGNFLK 183
AGL V G+F K
Sbjct: 226 ADAGLADRVTVAEGDFFK 243
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 176 VVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLY----VSYEWVTT 231
V+ G +P +D FD A + C E E +R+LK G V E
Sbjct: 88 VLKGTAENLPLKDESFDFALXVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLG 147
Query: 232 DKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK-EKDLAKPPAQ 286
+YE +NKE + S E+ ++ ++ GFE K + L K P++
Sbjct: 148 REYE-KNKEKSVFYKNAR-------FFSTEELXDLXRKAGFEEFKVVQTLFKHPSE 195
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 100 GKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN-VVGITINEYQV 158
G H + TRL + ++ GD++LD+G G G + AIAA +G+ I+ +
Sbjct: 100 GTGHHETTRLALKALAR--HLRPGDKVLDLGTGSG--VLAIAAEKLGGKALGVDIDPMVL 155
Query: 159 NRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLK 218
+A + K+ G V FL+ E G + + + ++YAE+ L
Sbjct: 156 PQAEANAKRNG-------VRPRFLEGSLEAALPFGPFDL-------LVANLYAELHAALA 201
Query: 219 P 219
P
Sbjct: 202 P 202
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 100 GKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN-VVGITINEYQV 158
G H + TRL + ++ GD++LD+G G G + AIAA +G+ I+ +
Sbjct: 100 GTGHAETTRLALKALAR--HLRPGDKVLDLGTGSG--VLAIAAEKLGGKALGVDIDPMVL 155
Query: 159 NRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLK 218
+A + K+ G V FL+ E G + + + ++YAE+ L
Sbjct: 156 PQAEANAKRNG-------VRPRFLEGSLEAALPFGPFDL-------LVANLYAELHAALA 201
Query: 219 P 219
P
Sbjct: 202 P 202
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 16/149 (10%)
Query: 92 FHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGI 151
F +PS+PG + + L +A + D +DVGCG GG +A R V I
Sbjct: 7 FIKNPSVPGPTAXEVRCLIXCLA----EPGKNDVAVDVGCGTGGVTLELAGRVR-RVYAI 61
Query: 152 TINEYQVNRARLHNKKAGLDSLCEVVCGN----FLKMPFEDNHFDGAYSIEATCHAPKLE 207
N ++ + ++ GL + G+ K+P D G E L+
Sbjct: 62 DRNPEAISTTEXNLQRHGLGDNVTLXEGDAPEALCKIPDIDIAVVGGSGGE-------LQ 114
Query: 208 DVYAEVFRVLKPGSLYVSYEWVTTDKYEA 236
++ + LKPG + + K+EA
Sbjct: 115 EILRIIKDKLKPGGRIIVTAILLETKFEA 143
>pdb|1KHH|A Chain A, Crystal Structure Of Guanidinoacetate Methyltransferase
From Rat Liver: A Template Structure Of Protein Arginine
Methyltransferase
pdb|1KHH|B Chain B, Crystal Structure Of Guanidinoacetate Methyltransferase
From Rat Liver: A Template Structure Of Protein Arginine
Methyltransferase
Length = 198
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 31/118 (26%)
Query: 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRA------RLHN-------KKAG 169
G R+L+VG G+ AIAA + V I E+ + RL N K
Sbjct: 23 GGRVLEVGFGM-----AIAA---SRVQQAPIKEHWIIECNDGVFQRLQNWALKQPHKVVP 74
Query: 170 LDSLCEVVCGNFLKMPFEDNHFDG----AYSI-EATCHAPKLEDVYAEVFRVLKPGSL 222
L L E V D HFDG Y + E T H + + FR+LKPG +
Sbjct: 75 LKGLWEEVAPTL-----PDGHFDGILYDTYPLSEETWHTHQFNFIKTHAFRLLKPGGI 127
>pdb|1P1B|A Chain A, Guanidinoacetate Methyltransferase
pdb|1P1B|B Chain B, Guanidinoacetate Methyltransferase
pdb|1P1B|C Chain C, Guanidinoacetate Methyltransferase
pdb|1P1B|D Chain D, Guanidinoacetate Methyltransferase
pdb|1P1C|A Chain A, Guanidinoacetate Methyltransferase With Gd Ion
pdb|1P1C|B Chain B, Guanidinoacetate Methyltransferase With Gd Ion
Length = 199
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 31/118 (26%)
Query: 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRA------RLHN-------KKAG 169
G R+L+VG G+ AIAA + V I E+ + RL N K
Sbjct: 24 GGRVLEVGFGM-----AIAA---SRVQQAPIKEHWIIECNDGVFQRLQNWALKQPHKVVP 75
Query: 170 LDSLCEVVCGNFLKMPFEDNHFDG----AYSI-EATCHAPKLEDVYAEVFRVLKPGSL 222
L L E V D HFDG Y + E T H + + FR+LKPG +
Sbjct: 76 LKGLWEEVAPTL-----PDGHFDGILYDTYPLSEETWHTHQFNFIKTHAFRLLKPGGI 128
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 126 ILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR 162
+LD+GCG G A H V+GI ++E + A+
Sbjct: 48 VLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAK 84
>pdb|1XCJ|A Chain A, Guanidinoacetate Methyltransferase Containing S-
Adenosylhomocysteine And Guanidinoacetate
pdb|1XCL|A Chain A, Guanidinoacetate Methyltransferase Containing S-
Adenosylhomocysteine And Guanidine
Length = 235
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 31/118 (26%)
Query: 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRA------RLHN-------KKAG 169
G R+L+VG G+ AIAA + V I E+ + RL N K
Sbjct: 60 GGRVLEVGFGM-----AIAA---SRVQQAPIKEHWIIECNDGVFQRLQNWALKQPHKVVP 111
Query: 170 LDSLCEVVCGNFLKMPFEDNHFDG----AYSI-EATCHAPKLEDVYAEVFRVLKPGSL 222
L L E V D HFDG Y + E T H + + FR+LKPG +
Sbjct: 112 LKGLWEEVAPTL-----PDGHFDGILYDTYPLSEETWHTHQFNFIKTHAFRLLKPGGI 164
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 117 LIDVKAGDRILDVGCGVGGPMRAIAAHS 144
++DVK GDRI+D G G G M A+ A +
Sbjct: 107 MLDVKEGDRIIDTGVG-SGAMCAVLARA 133
>pdb|3ZTJ|G Chain G, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|I Chain I, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|K Chain K, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTN|H Chain H, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H1 Influenza Haemagglutinin
Length = 226
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 227 EWVTTDKYEAENKEHVDIIQG---IERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKP 283
EWV Y+A K + D ++G I R ++ L + K+ L
Sbjct: 46 EWVAVISYDANYKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDSQLRSL 105
Query: 284 PAQPWWTRLKMGRFAYWRNHILVTILAALGIAPK 317
W L G F YW LVT+ +A P
Sbjct: 106 LYFEW---LSQGYFDYWGQGTLVTVSSASTKGPS 136
>pdb|4HTR|A Chain A, N149w Variant Of Sirhp Bound To Sulfite
Length = 507
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 197 IEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN 238
I A KLE +A + R PG + + +W DK+ EN
Sbjct: 2 IRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGEN 43
>pdb|4ECP|A Chain A, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa
From Mycobacterium Leprae
pdb|4ECP|B Chain B, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa
From Mycobacterium Leprae
Length = 167
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 134 GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG 193
G P+ A+ G+ + V R+ ++ G D +V+C +P D+ +D
Sbjct: 58 GDPLDALVLLPEPLFPGVLVEARPVGMFRMVDEHGGDD---KVLC-----VPVNDHRWD- 108
Query: 194 AYSIEATCHAPKLE-DVYAEVF---RVLKPGSLYVSYEWVTTDKYEAENKEHVD 243
I P E D F + L+PG + +WV D+ EAE + V+
Sbjct: 109 --HIHGIIDVPTFELDAIKHFFVHYKDLEPGKFVKAADWVGRDEAEAEVQRSVE 160
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
Query: 105 DATRLHEEMAVDLI-------------DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGI 151
D +HEEM D + D+ +LDVGCG G A H +V+G+
Sbjct: 8 DHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGV 67
Query: 152 TIN 154
++
Sbjct: 68 DMS 70
>pdb|3E8S|A Chain A, Crystal Structure Of Putative Sam Dependent
Methyltransferase In Complex With Sah (Np_744700.1) From
Pseudomonas Putida Kt2440 At 2.10 A Resolution
Length = 227
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 15/72 (20%)
Query: 124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR--------------LHNKKAG 169
+R+LD+GCG G +RA+A VG+ + V+ AR L K
Sbjct: 54 ERVLDLGCGEGWLLRALADRG-IEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVP 112
Query: 170 LDSLCEVVCGNF 181
+ +++C NF
Sbjct: 113 VGKDYDLICANF 124
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 126 ILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP 185
+ D+G G G ++A S A V ++ V AR + ++ G+ V G FL+ P
Sbjct: 125 VADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-P 183
Query: 186 FEDNH------FDGAYSIEATCHAPK 205
F++ ++++ H PK
Sbjct: 184 FKEKFASIEMILSNPPYVKSSAHLPK 209
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 126 ILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP 185
+ D+G G G ++A S A V ++ V AR + ++ G+ V G FL+ P
Sbjct: 137 VADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-P 195
Query: 186 FEDNHFDGAYSIEATCHAP 204
F++ SIE P
Sbjct: 196 FKEKF----ASIEXILSNP 210
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 126 ILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP 185
+ D+G G G ++A S A V ++ V AR + ++ G+ V G FL+ P
Sbjct: 127 VADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-P 185
Query: 186 FEDNHFDGAYSIEATCHAP 204
F++ SIE P
Sbjct: 186 FKEKF----ASIEMILSNP 200
>pdb|3GY1|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Protein From Clostridium Beijerinckii Ncimb
8052
pdb|3GY1|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Protein From Clostridium Beijerinckii Ncimb
8052
Length = 408
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 151 ITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY--SIEATCHA--PKL 206
+ +N Y N L+N +G+D + G MP F G +I A HA L
Sbjct: 76 MMVNSYWRNGPILNNAISGVDMALWDIKGKLANMPLY-QLFGGKSRDAIAAYTHAVADNL 134
Query: 207 EDVYAEVFRVLKPGSLYV 224
ED+Y E+ + K G ++
Sbjct: 135 EDLYTEIDEIRKKGYQHI 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,621,682
Number of Sequences: 62578
Number of extensions: 510587
Number of successful extensions: 1427
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 70
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)