Query 018194
Match_columns 359
No_of_seqs 512 out of 4206
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:56:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02244 tocopherol O-methyltr 100.0 2.5E-31 5.4E-36 243.5 26.7 219 64-282 52-281 (340)
2 PF02353 CMAS: Mycolic acid cy 100.0 8.6E-31 1.9E-35 231.0 18.9 260 67-341 4-270 (273)
3 COG2230 Cfa Cyclopropane fatty 100.0 9.8E-29 2.1E-33 214.0 24.1 260 66-342 13-277 (283)
4 COG2226 UbiE Methylase involve 100.0 1.9E-29 4.1E-34 215.0 18.4 199 64-281 11-226 (238)
5 PF01209 Ubie_methyltran: ubiE 100.0 2.3E-29 5E-34 217.2 11.7 198 64-281 7-222 (233)
6 KOG1540 Ubiquinone biosynthesi 99.9 1.3E-26 2.9E-31 193.1 15.2 196 67-280 63-283 (296)
7 PLN02233 ubiquinone biosynthes 99.9 2.5E-25 5.4E-30 196.6 19.5 170 110-281 61-250 (261)
8 PRK11705 cyclopropane fatty ac 99.9 2.7E-24 5.8E-29 199.2 26.4 263 65-354 108-374 (383)
9 PTZ00098 phosphoethanolamine N 99.9 2.7E-24 6E-29 190.2 23.6 244 78-353 18-263 (263)
10 KOG1269 SAM-dependent methyltr 99.9 4.5E-25 9.8E-30 200.0 9.6 309 48-356 36-360 (364)
11 PRK08317 hypothetical protein; 99.9 3E-22 6.5E-27 175.8 25.5 232 109-353 6-241 (241)
12 TIGR02752 MenG_heptapren 2-hep 99.9 2.7E-23 5.8E-28 181.4 17.9 172 108-281 31-220 (231)
13 PRK14103 trans-aconitate 2-met 99.9 7.7E-23 1.7E-27 180.9 20.2 157 111-278 18-183 (255)
14 PLN02396 hexaprenyldihydroxybe 99.9 4.8E-23 1E-27 185.5 18.8 163 121-284 130-294 (322)
15 COG2227 UbiG 2-polyprenyl-3-me 99.9 2.8E-23 6.1E-28 173.7 11.5 192 86-286 26-222 (243)
16 PLN02336 phosphoethanolamine N 99.9 1.8E-21 3.8E-26 187.5 22.2 161 112-281 256-416 (475)
17 PRK10258 biotin biosynthesis p 99.9 9.7E-21 2.1E-25 167.2 24.6 176 71-274 7-182 (251)
18 PRK11036 putative S-adenosyl-L 99.9 1.8E-21 3.8E-26 172.2 18.4 168 111-280 34-208 (255)
19 PRK15068 tRNA mo(5)U34 methylt 99.9 1.8E-20 3.8E-25 170.1 21.1 166 112-282 112-277 (322)
20 PRK01683 trans-aconitate 2-met 99.9 5.8E-20 1.3E-24 163.0 22.6 229 108-354 17-258 (258)
21 smart00828 PKS_MT Methyltransf 99.9 3E-20 6.6E-25 161.4 20.0 148 124-284 1-149 (224)
22 TIGR00452 methyltransferase, p 99.9 7.1E-20 1.5E-24 164.2 21.3 165 112-282 111-276 (314)
23 KOG1270 Methyltransferases [Co 99.9 1E-20 2.3E-25 159.2 13.5 159 123-285 90-255 (282)
24 PLN02490 MPBQ/MSBQ methyltrans 99.9 2.6E-20 5.7E-25 168.2 16.9 155 112-281 102-258 (340)
25 PRK00216 ubiE ubiquinone/menaq 99.8 9.2E-20 2E-24 159.9 19.5 169 110-280 39-226 (239)
26 PRK05785 hypothetical protein; 99.8 2.9E-20 6.3E-25 160.7 15.7 147 122-281 51-213 (226)
27 PRK15451 tRNA cmo(5)U34 methyl 99.8 8.4E-20 1.8E-24 160.5 18.1 153 120-275 54-226 (247)
28 PRK11873 arsM arsenite S-adeno 99.8 1.3E-19 2.7E-24 162.1 19.0 157 118-280 73-231 (272)
29 PF13489 Methyltransf_23: Meth 99.8 1E-20 2.3E-25 155.5 11.1 149 112-276 11-160 (161)
30 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 2.4E-19 5.3E-24 155.5 19.7 192 68-281 3-212 (223)
31 PF13847 Methyltransf_31: Meth 99.8 2.1E-20 4.6E-25 152.2 11.7 107 121-229 2-112 (152)
32 TIGR02072 BioC biotin biosynth 99.8 6.7E-19 1.4E-23 154.5 20.8 143 122-280 34-177 (240)
33 COG4106 Tam Trans-aconitate me 99.8 4E-19 8.8E-24 145.0 17.5 218 111-354 19-257 (257)
34 TIGR00740 methyltransferase, p 99.8 1.2E-19 2.5E-24 159.1 15.6 153 121-276 52-224 (239)
35 PRK11207 tellurite resistance 99.8 4.9E-19 1.1E-23 150.1 18.2 148 113-279 21-170 (197)
36 TIGR02716 C20_methyl_CrtF C-20 99.8 8.7E-19 1.9E-23 159.2 19.9 164 111-277 138-304 (306)
37 PLN02585 magnesium protoporphy 99.8 1E-18 2.2E-23 157.1 19.8 149 122-281 144-301 (315)
38 PF08241 Methyltransf_11: Meth 99.8 6.1E-20 1.3E-24 136.9 9.7 95 127-225 1-95 (95)
39 KOG4300 Predicted methyltransf 99.8 8.6E-19 1.9E-23 142.0 16.6 158 117-280 71-233 (252)
40 PF12847 Methyltransf_18: Meth 99.8 3.6E-19 7.9E-24 137.2 11.6 105 122-227 1-111 (112)
41 TIGR00477 tehB tellurite resis 99.8 3.7E-18 8E-23 144.5 17.1 147 114-280 22-170 (195)
42 PRK05134 bifunctional 3-demeth 99.8 2.5E-17 5.4E-22 143.9 19.2 168 111-281 37-207 (233)
43 TIGR02021 BchM-ChlM magnesium 99.8 2E-17 4.4E-22 143.0 18.5 165 106-281 37-208 (219)
44 PRK00107 gidB 16S rRNA methylt 99.8 6.9E-17 1.5E-21 134.8 19.3 129 120-282 43-172 (187)
45 PRK12335 tellurite resistance 99.8 2.7E-17 5.9E-22 147.7 17.0 138 122-279 120-259 (287)
46 PF08003 Methyltransf_9: Prote 99.8 2.2E-17 4.8E-22 143.4 15.5 167 112-283 105-271 (315)
47 TIGR01983 UbiG ubiquinone bios 99.7 1.6E-16 3.5E-21 137.9 17.0 156 122-284 45-208 (224)
48 TIGR00138 gidB 16S rRNA methyl 99.7 3.3E-16 7.2E-21 130.5 17.9 99 122-226 42-141 (181)
49 PRK07580 Mg-protoporphyrin IX 99.7 4.3E-16 9.4E-21 135.8 19.5 151 120-281 61-216 (230)
50 PF03848 TehB: Tellurite resis 99.7 1.4E-16 3E-21 131.9 14.8 145 114-278 22-168 (192)
51 PRK06202 hypothetical protein; 99.7 1.3E-16 2.8E-21 139.2 13.9 155 119-280 57-223 (232)
52 PRK08287 cobalt-precorrin-6Y C 99.7 8.6E-16 1.9E-20 129.4 17.8 139 109-280 18-157 (187)
53 PLN02232 ubiquinone biosynthes 99.7 1.4E-16 3E-21 130.4 10.9 131 149-281 1-149 (160)
54 PRK13944 protein-L-isoaspartat 99.7 5.7E-16 1.2E-20 132.2 14.8 112 109-226 59-172 (205)
55 PF13649 Methyltransf_25: Meth 99.7 5.1E-17 1.1E-21 122.6 7.3 94 126-221 1-101 (101)
56 PLN02336 phosphoethanolamine N 99.7 4.1E-16 8.8E-21 150.3 15.3 150 111-276 26-179 (475)
57 TIGR00537 hemK_rel_arch HemK-r 99.7 1.9E-15 4.1E-20 126.4 17.4 134 116-281 13-167 (179)
58 PRK06922 hypothetical protein; 99.7 1.9E-16 4E-21 151.6 12.5 112 117-230 413-540 (677)
59 TIGR03840 TMPT_Se_Te thiopurin 99.7 3.3E-15 7.1E-20 127.5 18.9 153 120-290 32-198 (213)
60 PRK04266 fibrillarin; Provisio 99.7 1.6E-15 3.4E-20 130.5 16.3 139 117-281 67-212 (226)
61 TIGR02081 metW methionine bios 99.7 1.2E-15 2.7E-20 129.2 15.5 146 121-281 12-169 (194)
62 COG4976 Predicted methyltransf 99.7 3.5E-16 7.6E-21 128.9 11.4 206 46-281 44-267 (287)
63 PF07021 MetW: Methionine bios 99.7 1.4E-15 3.1E-20 124.0 14.8 148 114-283 7-171 (193)
64 PF08242 Methyltransf_12: Meth 99.7 1.3E-17 2.7E-22 125.5 2.6 96 127-223 1-99 (99)
65 PRK00121 trmB tRNA (guanine-N( 99.7 7.4E-16 1.6E-20 131.1 12.7 104 122-226 40-155 (202)
66 PRK00377 cbiT cobalt-precorrin 99.7 4.7E-15 1E-19 126.0 17.6 133 112-274 30-165 (198)
67 PF05401 NodS: Nodulation prot 99.7 1.9E-15 4.1E-20 123.5 14.0 145 112-280 33-180 (201)
68 TIGR03587 Pse_Me-ase pseudamin 99.7 1.8E-15 4E-20 128.5 14.6 103 120-231 41-146 (204)
69 PRK13255 thiopurine S-methyltr 99.7 1.2E-14 2.7E-19 124.5 19.3 156 119-292 34-203 (218)
70 PRK14967 putative methyltransf 99.7 1.7E-14 3.6E-19 125.0 20.3 134 116-279 30-184 (223)
71 TIGR02469 CbiT precorrin-6Y C5 99.7 3E-15 6.5E-20 117.3 14.2 112 111-226 8-121 (124)
72 PRK00517 prmA ribosomal protei 99.6 5.3E-15 1.1E-19 130.2 16.0 150 86-280 90-239 (250)
73 PRK13942 protein-L-isoaspartat 99.6 4.3E-15 9.3E-20 127.3 14.5 112 108-226 62-175 (212)
74 smart00138 MeTrc Methyltransfe 99.6 6.1E-15 1.3E-19 130.4 15.7 108 119-226 96-241 (264)
75 PRK14968 putative methyltransf 99.6 1.6E-14 3.5E-19 121.9 16.5 136 115-279 16-173 (188)
76 KOG1271 Methyltransferases [Ge 99.6 2.2E-14 4.7E-19 114.2 15.9 146 105-278 46-204 (227)
77 PLN03075 nicotianamine synthas 99.6 1.1E-14 2.4E-19 128.3 15.5 108 118-226 119-232 (296)
78 TIGR00080 pimt protein-L-isoas 99.6 9.1E-15 2E-19 125.9 14.7 112 108-226 63-176 (215)
79 COG2242 CobL Precorrin-6B meth 99.6 6.4E-14 1.4E-18 113.7 17.7 139 108-278 20-160 (187)
80 PRK11088 rrmA 23S rRNA methylt 99.6 1.9E-14 4.2E-19 128.4 15.9 102 112-227 76-181 (272)
81 TIGR01177 conserved hypothetic 99.6 2.3E-14 5E-19 131.2 15.7 137 111-280 171-316 (329)
82 PTZ00146 fibrillarin; Provisio 99.6 6.2E-14 1.3E-18 123.1 17.0 136 117-280 127-272 (293)
83 PF05175 MTS: Methyltransferas 99.6 4.3E-14 9.4E-19 117.0 15.0 118 103-226 16-139 (170)
84 TIGR03534 RF_mod_PrmC protein- 99.6 8.2E-14 1.8E-18 123.1 17.5 138 109-277 75-239 (251)
85 TIGR03438 probable methyltrans 99.6 4E-14 8.7E-19 127.9 15.4 117 107-225 50-175 (301)
86 TIGR00406 prmA ribosomal prote 99.6 6.6E-14 1.4E-18 125.7 16.4 127 121-280 158-284 (288)
87 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.1E-14 2.5E-19 123.1 10.8 104 122-226 16-131 (194)
88 KOG3010 Methyltransferase [Gen 99.6 4.1E-14 8.9E-19 118.1 13.2 103 121-225 31-134 (261)
89 COG2264 PrmA Ribosomal protein 99.6 7.6E-14 1.6E-18 122.6 15.4 155 88-280 135-289 (300)
90 PRK15001 SAM-dependent 23S rib 99.6 4.7E-14 1E-18 129.5 14.0 114 112-226 218-339 (378)
91 PF06325 PrmA: Ribosomal prote 99.6 3.7E-14 8.1E-19 125.9 12.7 151 88-280 134-284 (295)
92 KOG2361 Predicted methyltransf 99.5 3E-14 6.4E-19 118.9 10.0 152 125-278 74-236 (264)
93 PRK07402 precorrin-6B methylas 99.5 1.8E-13 3.9E-18 116.1 15.1 114 109-227 27-142 (196)
94 TIGR03533 L3_gln_methyl protei 99.5 4.5E-13 9.7E-18 119.8 17.8 104 121-225 120-249 (284)
95 COG2519 GCD14 tRNA(1-methylade 99.5 1.8E-13 3.8E-18 116.0 14.2 137 111-280 83-221 (256)
96 PRK00312 pcm protein-L-isoaspa 99.5 1.7E-13 3.8E-18 117.8 14.5 111 109-227 65-175 (212)
97 COG4123 Predicted O-methyltran 99.5 2.3E-13 5E-18 116.4 14.8 141 114-282 36-197 (248)
98 TIGR00536 hemK_fam HemK family 99.5 4.5E-13 9.7E-18 120.2 17.4 103 122-225 114-242 (284)
99 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.2E-13 2.7E-18 126.2 13.8 113 113-226 113-234 (390)
100 PF13659 Methyltransf_26: Meth 99.5 3.5E-14 7.7E-19 110.1 8.4 105 123-227 1-115 (117)
101 COG2518 Pcm Protein-L-isoaspar 99.5 2.7E-13 5.9E-18 112.5 13.9 112 108-227 58-169 (209)
102 PRK14966 unknown domain/N5-glu 99.5 7.3E-13 1.6E-17 121.8 17.9 140 106-277 237-403 (423)
103 PF08704 GCD14: tRNA methyltra 99.5 2.7E-13 5.8E-18 117.2 14.1 140 109-280 27-172 (247)
104 PRK09328 N5-glutamine S-adenos 99.5 9E-13 1.9E-17 118.1 17.7 140 108-277 94-260 (275)
105 PRK11805 N5-glutamine S-adenos 99.5 7.9E-13 1.7E-17 119.3 17.4 102 123-225 134-261 (307)
106 PRK09489 rsmC 16S ribosomal RN 99.5 2E-13 4.3E-18 124.7 13.6 112 112-227 186-303 (342)
107 PF01135 PCMT: Protein-L-isoas 99.5 1.5E-13 3.2E-18 116.6 11.0 113 107-226 57-171 (209)
108 PF00891 Methyltransf_2: O-met 99.5 7.5E-13 1.6E-17 116.2 15.7 143 112-268 90-241 (241)
109 PF05891 Methyltransf_PK: AdoM 99.5 6.1E-13 1.3E-17 110.8 12.3 146 122-280 55-202 (218)
110 KOG2940 Predicted methyltransf 99.5 1.7E-13 3.6E-18 113.1 8.8 151 123-278 73-226 (325)
111 PRK11188 rrmJ 23S rRNA methylt 99.5 9.1E-13 2E-17 112.5 13.7 97 120-228 49-166 (209)
112 PRK13943 protein-L-isoaspartat 99.5 5.7E-13 1.2E-17 120.2 12.9 111 109-226 67-179 (322)
113 KOG1541 Predicted protein carb 99.5 5.8E-13 1.3E-17 109.4 11.4 113 107-226 33-159 (270)
114 PF05219 DREV: DREV methyltran 99.5 6.4E-13 1.4E-17 113.2 11.4 148 122-281 94-242 (265)
115 PRK01544 bifunctional N5-gluta 99.5 3.8E-12 8.2E-17 122.5 17.7 131 122-281 138-296 (506)
116 PF06080 DUF938: Protein of un 99.4 6.1E-12 1.3E-16 104.4 16.0 166 112-281 16-194 (204)
117 PRK14901 16S rRNA methyltransf 99.4 2.7E-12 5.9E-17 121.8 15.8 116 111-227 241-384 (434)
118 PRK13256 thiopurine S-methyltr 99.4 1E-11 2.2E-16 106.0 17.5 140 118-276 39-194 (226)
119 TIGR00563 rsmB ribosomal RNA s 99.4 2.2E-12 4.7E-17 122.3 13.9 120 111-230 227-371 (426)
120 PHA03411 putative methyltransf 99.4 4.4E-12 9.6E-17 110.2 14.4 128 121-276 63-211 (279)
121 PRK10901 16S rRNA methyltransf 99.4 9.6E-12 2.1E-16 117.9 17.1 115 112-228 234-373 (427)
122 PRK14904 16S rRNA methyltransf 99.4 6.4E-12 1.4E-16 119.7 14.4 114 113-228 241-378 (445)
123 cd02440 AdoMet_MTases S-adenos 99.4 5.1E-12 1.1E-16 95.0 11.1 101 125-226 1-103 (107)
124 PF05724 TPMT: Thiopurine S-me 99.4 5.4E-12 1.2E-16 107.9 12.4 145 118-280 33-191 (218)
125 TIGR03704 PrmC_rel_meth putati 99.4 3.2E-11 6.9E-16 105.9 17.3 137 108-276 71-237 (251)
126 PRK14903 16S rRNA methyltransf 99.4 7.6E-12 1.6E-16 118.2 13.5 117 112-229 227-368 (431)
127 PRK14902 16S rRNA methyltransf 99.4 1.6E-11 3.5E-16 117.0 15.9 113 112-226 240-378 (444)
128 COG2890 HemK Methylase of poly 99.4 3.4E-11 7.4E-16 107.1 16.7 123 125-278 113-262 (280)
129 PF12147 Methyltransf_20: Puta 99.4 7.9E-11 1.7E-15 101.7 17.7 153 121-277 134-296 (311)
130 COG2813 RsmC 16S RNA G1207 met 99.4 1.7E-11 3.7E-16 107.2 13.8 114 111-227 147-266 (300)
131 PF03291 Pox_MCEL: mRNA cappin 99.4 4.3E-12 9.3E-17 115.0 10.3 107 122-228 62-187 (331)
132 PRK04457 spermidine synthase; 99.3 9.1E-12 2E-16 110.0 12.1 109 120-228 64-178 (262)
133 TIGR00446 nop2p NOL1/NOP2/sun 99.3 1.3E-11 2.8E-16 109.4 13.0 112 115-227 64-199 (264)
134 PLN02781 Probable caffeoyl-CoA 99.3 8.9E-12 1.9E-16 108.3 11.6 108 117-227 63-178 (234)
135 smart00650 rADc Ribosomal RNA 99.3 2E-11 4.3E-16 101.0 13.0 107 112-225 3-111 (169)
136 PRK11783 rlmL 23S rRNA m(2)G24 99.3 2.5E-11 5.4E-16 121.6 15.2 139 122-288 538-689 (702)
137 PRK13168 rumA 23S rRNA m(5)U19 99.3 6.8E-11 1.5E-15 112.7 16.5 132 89-226 264-399 (443)
138 TIGR00438 rrmJ cell division p 99.3 2.5E-11 5.3E-16 102.3 12.0 98 117-226 27-145 (188)
139 KOG1975 mRNA cap methyltransfe 99.3 2.8E-11 6.1E-16 105.1 11.8 152 67-226 70-236 (389)
140 PRK00811 spermidine synthase; 99.3 2.4E-11 5.1E-16 108.7 11.8 105 121-225 75-189 (283)
141 PF05148 Methyltransf_8: Hypot 99.3 3.3E-11 7.1E-16 99.5 11.4 125 112-280 61-186 (219)
142 PRK03612 spermidine synthase; 99.3 3.2E-11 6.9E-16 116.7 12.5 106 121-226 296-414 (521)
143 PRK01581 speE spermidine synth 99.3 8E-11 1.7E-15 106.3 12.5 139 121-282 149-300 (374)
144 PRK15128 23S rRNA m(5)C1962 me 99.2 1.8E-10 3.9E-15 107.3 14.3 105 122-226 220-338 (396)
145 COG4122 Predicted O-methyltran 99.2 6.8E-11 1.5E-15 99.9 10.3 116 112-230 49-169 (219)
146 PF02390 Methyltransf_4: Putat 99.2 6.7E-11 1.5E-15 99.6 10.3 101 125-226 20-132 (195)
147 PRK03522 rumB 23S rRNA methylu 99.2 3.5E-10 7.5E-15 103.0 15.6 117 105-226 156-273 (315)
148 PLN02476 O-methyltransferase 99.2 2.2E-10 4.7E-15 100.8 12.5 107 117-226 113-227 (278)
149 TIGR00479 rumA 23S rRNA (uraci 99.2 7E-10 1.5E-14 105.6 16.4 117 104-225 274-394 (431)
150 PLN02366 spermidine synthase 99.2 2.2E-10 4.8E-15 103.0 12.1 105 121-225 90-204 (308)
151 KOG2899 Predicted methyltransf 99.2 5.1E-10 1.1E-14 93.6 12.9 148 121-276 57-254 (288)
152 PF01596 Methyltransf_3: O-met 99.2 8.7E-11 1.9E-15 99.4 8.2 117 105-227 31-155 (205)
153 PLN02672 methionine S-methyltr 99.2 1.1E-09 2.4E-14 112.0 17.6 103 123-225 119-276 (1082)
154 TIGR00417 speE spermidine synt 99.2 4.8E-10 1E-14 99.9 13.3 105 122-226 72-185 (270)
155 KOG3045 Predicted RNA methylas 99.2 6.7E-10 1.4E-14 93.8 13.2 122 113-280 170-292 (325)
156 PRK11727 23S rRNA mA1618 methy 99.2 4.3E-09 9.2E-14 94.8 19.3 155 122-284 114-297 (321)
157 PRK10909 rsmD 16S rRNA m(2)G96 99.2 5.1E-10 1.1E-14 94.3 11.9 117 108-226 38-158 (199)
158 KOG1499 Protein arginine N-met 99.1 1.4E-10 3E-15 102.8 7.8 112 112-224 50-164 (346)
159 PF10294 Methyltransf_16: Puta 99.1 7E-10 1.5E-14 91.9 11.6 107 119-226 42-155 (173)
160 COG1041 Predicted DNA modifica 99.1 1.2E-09 2.6E-14 97.5 13.5 116 109-226 184-309 (347)
161 COG2521 Predicted archaeal met 99.1 1.6E-10 3.4E-15 96.1 7.4 143 117-279 129-277 (287)
162 PF08498 Sterol_MT_C: Sterol m 99.1 1.6E-10 3.4E-15 77.5 5.9 63 292-354 5-67 (67)
163 PLN02589 caffeoyl-CoA O-methyl 99.1 7.4E-10 1.6E-14 96.2 9.9 103 120-225 77-188 (247)
164 PRK14896 ksgA 16S ribosomal RN 99.1 1.1E-09 2.4E-14 96.8 11.1 87 108-200 15-101 (258)
165 PHA03412 putative methyltransf 99.1 7.5E-10 1.6E-14 94.2 9.3 93 123-222 50-158 (241)
166 KOG3178 Hydroxyindole-O-methyl 99.1 4.6E-09 9.9E-14 93.5 14.6 147 124-281 179-332 (342)
167 COG0220 Predicted S-adenosylme 99.1 1.8E-09 3.8E-14 92.5 11.3 102 124-226 50-163 (227)
168 COG2263 Predicted RNA methylas 99.1 2.3E-09 5E-14 86.9 11.2 136 118-290 41-181 (198)
169 PF01739 CheR: CheR methyltran 99.1 1.4E-09 3.1E-14 91.3 10.3 105 122-226 31-174 (196)
170 PTZ00338 dimethyladenosine tra 99.0 1.6E-09 3.6E-14 96.9 10.6 90 108-200 22-111 (294)
171 COG3963 Phospholipid N-methylt 99.0 1.1E-08 2.4E-13 80.9 13.7 145 73-229 5-158 (194)
172 TIGR02085 meth_trns_rumB 23S r 99.0 4.5E-09 9.8E-14 97.8 13.8 131 91-226 202-333 (374)
173 PF01170 UPF0020: Putative RNA 99.0 4.9E-09 1.1E-13 87.2 12.3 116 109-224 15-148 (179)
174 KOG2915 tRNA(1-methyladenosine 99.0 1.2E-08 2.5E-13 87.1 14.5 138 111-280 94-236 (314)
175 KOG2904 Predicted methyltransf 99.0 8.4E-09 1.8E-13 88.0 13.6 126 99-225 126-283 (328)
176 COG1352 CheR Methylase of chem 99.0 6.9E-09 1.5E-13 90.9 13.3 105 122-226 96-240 (268)
177 PRK10611 chemotaxis methyltran 99.0 9.5E-10 2.1E-14 97.5 8.0 104 123-226 116-261 (287)
178 PRK00274 ksgA 16S ribosomal RN 99.0 1.7E-09 3.6E-14 96.4 9.6 85 110-199 30-114 (272)
179 PF07942 N2227: N2227-like pro 99.0 1.8E-08 4E-13 88.0 15.2 145 122-279 56-242 (270)
180 KOG1661 Protein-L-isoaspartate 99.0 2.7E-09 5.9E-14 87.5 9.1 113 108-226 66-192 (237)
181 PF05185 PRMT5: PRMT5 arginine 99.0 8.6E-09 1.9E-13 97.4 13.6 101 123-224 187-294 (448)
182 PF02527 GidB: rRNA small subu 99.0 1E-08 2.2E-13 85.1 12.2 126 125-281 51-177 (184)
183 TIGR00095 RNA methyltransferas 98.9 1.1E-08 2.4E-13 85.8 11.7 103 122-225 49-157 (189)
184 KOG1500 Protein arginine N-met 98.9 1.7E-08 3.6E-13 88.5 12.3 101 122-224 177-279 (517)
185 PF04672 Methyltransf_19: S-ad 98.9 1.5E-08 3.2E-13 87.8 11.3 162 108-276 53-233 (267)
186 TIGR00755 ksgA dimethyladenosi 98.9 3.5E-08 7.6E-13 87.1 13.2 85 109-199 16-103 (253)
187 TIGR00478 tly hemolysin TlyA f 98.9 4.5E-08 9.8E-13 84.1 12.9 141 114-279 66-217 (228)
188 KOG3420 Predicted RNA methylas 98.9 7.9E-09 1.7E-13 79.6 7.0 91 110-202 36-126 (185)
189 COG0357 GidB Predicted S-adeno 98.9 2.8E-07 6E-12 77.9 17.0 129 123-282 68-198 (215)
190 PF02475 Met_10: Met-10+ like- 98.8 1.7E-08 3.8E-13 84.8 9.1 106 112-224 93-199 (200)
191 PRK11933 yebU rRNA (cytosine-C 98.8 9.5E-08 2.1E-12 90.7 13.3 108 119-227 110-242 (470)
192 PRK04148 hypothetical protein; 98.8 1.1E-07 2.3E-12 74.0 11.2 102 111-226 5-108 (134)
193 PRK00536 speE spermidine synth 98.8 2.3E-07 4.9E-12 81.2 14.5 97 121-226 71-170 (262)
194 KOG3191 Predicted N6-DNA-methy 98.8 6.6E-07 1.4E-11 72.0 15.6 126 123-278 44-192 (209)
195 COG0030 KsgA Dimethyladenosine 98.8 6.6E-08 1.4E-12 83.8 10.6 88 108-199 16-104 (259)
196 COG1092 Predicted SAM-dependen 98.8 1.2E-07 2.7E-12 87.3 12.7 158 106-289 204-376 (393)
197 PF03141 Methyltransf_29: Puta 98.8 4.4E-09 9.5E-14 97.7 3.2 113 107-226 98-218 (506)
198 PLN02823 spermine synthase 98.8 7.2E-08 1.6E-12 87.7 11.0 103 122-225 103-218 (336)
199 PF11968 DUF3321: Putative met 98.7 2E-07 4.3E-12 77.8 12.3 121 124-282 53-184 (219)
200 PRK01544 bifunctional N5-gluta 98.7 5.9E-08 1.3E-12 93.7 10.5 104 122-226 347-461 (506)
201 PRK05031 tRNA (uracil-5-)-meth 98.7 2.7E-07 5.9E-12 85.6 14.3 118 101-226 186-319 (362)
202 PF03602 Cons_hypoth95: Conser 98.7 1.2E-08 2.6E-13 84.9 4.8 117 108-225 26-151 (183)
203 PRK04338 N(2),N(2)-dimethylgua 98.7 9.9E-08 2.2E-12 88.6 11.2 99 123-226 58-157 (382)
204 PF10672 Methyltrans_SAM: S-ad 98.7 5E-08 1.1E-12 86.4 8.7 116 108-226 112-237 (286)
205 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.7 9E-08 1.9E-12 83.2 10.1 144 122-278 56-238 (256)
206 KOG0820 Ribosomal RNA adenine 98.7 9.3E-08 2E-12 81.7 9.7 86 110-198 46-131 (315)
207 KOG3987 Uncharacterized conser 98.7 1.9E-09 4.2E-14 88.0 -0.7 147 123-280 113-261 (288)
208 TIGR02143 trmA_only tRNA (urac 98.7 3.2E-07 7E-12 84.7 12.8 115 104-226 180-310 (353)
209 COG0421 SpeE Spermidine syntha 98.7 2.8E-07 6E-12 81.6 11.7 107 119-226 74-189 (282)
210 KOG1331 Predicted methyltransf 98.7 2E-08 4.3E-13 86.7 4.3 100 121-231 44-147 (293)
211 PRK00050 16S rRNA m(4)C1402 me 98.7 9.1E-08 2E-12 85.2 8.3 89 110-201 7-101 (296)
212 COG0742 N6-adenine-specific me 98.6 4.5E-07 9.8E-12 74.4 11.5 124 102-225 21-152 (187)
213 KOG1663 O-methyltransferase [S 98.6 3.2E-07 6.9E-12 76.9 10.3 105 119-226 70-182 (237)
214 COG2520 Predicted methyltransf 98.6 4.6E-07 1E-11 81.8 11.5 114 112-231 180-293 (341)
215 COG2265 TrmA SAM-dependent met 98.6 1.3E-06 2.9E-11 82.1 15.0 131 91-226 262-395 (432)
216 PF08123 DOT1: Histone methyla 98.6 1.9E-07 4.2E-12 78.9 8.3 116 109-225 29-156 (205)
217 COG4798 Predicted methyltransf 98.6 5.8E-07 1.3E-11 73.0 10.4 158 113-284 39-210 (238)
218 PF02384 N6_Mtase: N-6 DNA Met 98.6 5.3E-07 1.2E-11 82.2 11.7 119 109-227 33-183 (311)
219 PF01564 Spermine_synth: Sperm 98.6 1.2E-07 2.7E-12 82.9 6.9 106 122-227 76-191 (246)
220 PF09243 Rsm22: Mitochondrial 98.6 1E-06 2.2E-11 78.5 12.2 139 112-276 23-165 (274)
221 PRK11783 rlmL 23S rRNA m(2)G24 98.5 8.6E-07 1.9E-11 89.2 12.6 119 108-226 175-346 (702)
222 PF04816 DUF633: Family of unk 98.5 1.9E-06 4.2E-11 72.9 12.2 123 126-280 1-125 (205)
223 COG0144 Sun tRNA and rRNA cyto 98.5 6.9E-06 1.5E-10 75.8 16.9 116 112-228 146-289 (355)
224 PF09445 Methyltransf_15: RNA 98.5 1.8E-07 3.9E-12 75.5 5.6 73 125-198 2-77 (163)
225 COG0500 SmtA SAM-dependent met 98.5 2.2E-06 4.7E-11 70.0 12.1 102 126-230 52-158 (257)
226 KOG2730 Methylase [General fun 98.5 4.2E-07 9.2E-12 75.3 7.0 98 122-220 94-195 (263)
227 TIGR03439 methyl_EasF probable 98.5 3.5E-06 7.6E-11 76.1 13.5 121 104-226 60-196 (319)
228 PF05958 tRNA_U5-meth_tr: tRNA 98.5 1.3E-06 2.8E-11 80.7 10.5 91 91-184 166-256 (352)
229 COG4262 Predicted spermidine s 98.4 3.4E-06 7.3E-11 75.2 12.2 177 83-290 256-446 (508)
230 PF13679 Methyltransf_32: Meth 98.4 2E-06 4.2E-11 68.8 9.0 100 120-225 23-129 (141)
231 PF01269 Fibrillarin: Fibrilla 98.4 1.9E-05 4.1E-10 66.4 14.6 140 117-280 68-213 (229)
232 PF01728 FtsJ: FtsJ-like methy 98.4 2.8E-07 6E-12 77.1 3.4 93 122-226 23-138 (181)
233 KOG2187 tRNA uracil-5-methyltr 98.4 6.4E-07 1.4E-11 83.4 5.9 101 82-184 343-443 (534)
234 PF00398 RrnaAD: Ribosomal RNA 98.3 4.2E-06 9.1E-11 74.2 10.6 105 108-219 16-123 (262)
235 COG0116 Predicted N6-adenine-s 98.3 3.7E-06 8E-11 76.5 9.9 120 107-226 176-343 (381)
236 TIGR00308 TRM1 tRNA(guanine-26 98.2 1.1E-05 2.4E-10 74.7 11.5 100 123-227 45-147 (374)
237 KOG1709 Guanidinoacetate methy 98.2 1.1E-05 2.3E-10 66.9 10.0 104 121-226 100-205 (271)
238 COG0293 FtsJ 23S rRNA methylas 98.2 1.5E-05 3.2E-10 66.6 11.1 97 120-228 43-160 (205)
239 KOG3201 Uncharacterized conser 98.2 1.7E-06 3.6E-11 68.2 4.8 144 110-280 17-167 (201)
240 COG3897 Predicted methyltransf 98.2 7.5E-06 1.6E-10 66.9 8.4 110 111-226 68-178 (218)
241 PF03059 NAS: Nicotianamine sy 98.2 3E-05 6.4E-10 68.3 12.1 104 123-226 121-229 (276)
242 COG1889 NOP1 Fibrillarin-like 98.1 0.00022 4.7E-09 58.8 15.3 140 117-280 71-215 (231)
243 PRK11760 putative 23S rRNA C24 98.1 3.8E-05 8.3E-10 69.0 11.5 88 120-220 209-296 (357)
244 KOG2798 Putative trehalase [Ca 98.1 6.4E-05 1.4E-09 65.9 12.0 146 123-283 151-341 (369)
245 PLN02668 indole-3-acetate carb 98.1 0.00089 1.9E-08 61.9 20.1 159 123-281 64-311 (386)
246 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.1 3.2E-05 6.9E-10 69.3 10.2 114 113-227 76-219 (283)
247 TIGR02987 met_A_Alw26 type II 98.0 6.6E-05 1.4E-09 73.5 12.9 78 122-200 31-122 (524)
248 PF13578 Methyltransf_24: Meth 98.0 1.2E-06 2.6E-11 66.4 0.1 99 127-227 1-105 (106)
249 COG4076 Predicted RNA methylas 97.9 4.2E-05 9E-10 62.0 7.4 98 124-225 34-133 (252)
250 PF03492 Methyltransf_7: SAM d 97.9 0.00091 2E-08 61.3 17.3 161 120-281 14-255 (334)
251 COG2384 Predicted SAM-dependen 97.9 0.00032 6.9E-09 58.9 12.7 128 122-280 16-144 (226)
252 PRK10742 putative methyltransf 97.8 0.00013 2.8E-09 62.9 9.3 90 112-202 76-176 (250)
253 TIGR00006 S-adenosyl-methyltra 97.8 0.00013 2.9E-09 65.2 9.6 90 110-201 8-103 (305)
254 KOG2352 Predicted spermine/spe 97.8 0.00034 7.3E-09 65.4 12.3 103 124-228 50-162 (482)
255 TIGR01444 fkbM_fam methyltrans 97.8 0.00011 2.3E-09 58.8 7.3 58 125-183 1-59 (143)
256 PF06962 rRNA_methylase: Putat 97.8 0.00012 2.6E-09 57.4 7.3 115 147-282 1-128 (140)
257 PF07091 FmrO: Ribosomal RNA m 97.7 0.00049 1.1E-08 59.2 11.5 81 121-204 104-185 (251)
258 COG1189 Predicted rRNA methyla 97.7 0.0015 3.3E-08 55.5 13.2 140 121-279 78-224 (245)
259 COG1064 AdhP Zn-dependent alco 97.6 0.00071 1.5E-08 61.3 11.5 100 116-229 160-261 (339)
260 COG4627 Uncharacterized protei 97.6 2.3E-05 5E-10 61.4 1.2 52 175-226 32-85 (185)
261 PF05971 Methyltransf_10: Prot 97.6 0.00095 2.1E-08 59.5 11.3 81 123-203 103-190 (299)
262 KOG1122 tRNA and rRNA cytosine 97.5 0.00075 1.6E-08 61.8 10.2 112 117-230 236-374 (460)
263 KOG4589 Cell division protein 97.5 0.00088 1.9E-08 54.5 9.5 99 120-230 67-187 (232)
264 KOG4058 Uncharacterized conser 97.5 0.0011 2.4E-08 51.7 9.2 113 110-227 60-172 (199)
265 TIGR00027 mthyl_TIGR00027 meth 97.5 0.0099 2.1E-07 52.6 16.2 151 123-277 82-248 (260)
266 KOG3115 Methyltransferase-like 97.5 0.00055 1.2E-08 56.4 7.3 104 123-226 61-182 (249)
267 PF01861 DUF43: Protein of unk 97.4 0.013 2.7E-07 50.3 15.1 130 122-278 44-177 (243)
268 PF03141 Methyltransf_29: Puta 97.3 0.00048 1E-08 64.7 6.3 95 124-227 367-467 (506)
269 PF04989 CmcI: Cephalosporin h 97.2 0.0017 3.6E-08 54.6 7.8 104 123-228 33-148 (206)
270 COG0286 HsdM Type I restrictio 97.2 0.0094 2E-07 57.7 13.9 117 110-226 174-325 (489)
271 PF04445 SAM_MT: Putative SAM- 97.2 0.0019 4.2E-08 55.4 7.8 90 112-202 63-163 (234)
272 PRK09424 pntA NAD(P) transhydr 97.1 0.0059 1.3E-07 58.9 11.4 100 120-227 162-285 (509)
273 COG5459 Predicted rRNA methyla 97.1 0.0027 5.9E-08 56.8 8.0 109 122-231 113-229 (484)
274 KOG2793 Putative N2,N2-dimethy 97.0 0.0098 2.1E-07 51.6 10.5 103 122-225 86-197 (248)
275 KOG2198 tRNA cytosine-5-methyl 96.9 0.024 5.2E-07 51.5 12.8 111 117-228 150-297 (375)
276 PF01795 Methyltransf_5: MraW 96.9 0.0017 3.8E-08 58.1 5.4 88 111-200 9-103 (310)
277 PF11599 AviRa: RRNA methyltra 96.9 0.018 3.9E-07 48.3 10.8 136 89-225 19-212 (246)
278 COG0275 Predicted S-adenosylme 96.8 0.011 2.3E-07 52.3 9.4 90 110-201 11-107 (314)
279 PF06859 Bin3: Bicoid-interact 96.7 0.00062 1.4E-08 50.6 1.1 85 190-280 1-93 (110)
280 cd08283 FDH_like_1 Glutathione 96.6 0.023 4.9E-07 53.5 10.9 108 116-227 178-306 (386)
281 KOG0024 Sorbitol dehydrogenase 96.5 0.055 1.2E-06 48.3 12.1 106 115-231 162-277 (354)
282 PRK09880 L-idonate 5-dehydroge 96.5 0.02 4.2E-07 53.0 9.5 100 118-227 165-266 (343)
283 KOG0822 Protein kinase inhibit 96.4 0.046 1E-06 51.8 11.4 117 107-225 349-476 (649)
284 KOG1562 Spermidine synthase [A 96.4 0.011 2.4E-07 51.8 6.8 109 119-227 118-236 (337)
285 COG1063 Tdh Threonine dehydrog 96.4 0.097 2.1E-06 48.6 13.6 98 120-230 166-272 (350)
286 KOG1596 Fibrillarin and relate 96.3 0.017 3.6E-07 49.2 7.4 102 116-227 150-261 (317)
287 PF02005 TRM: N2,N2-dimethylgu 96.3 0.014 3.1E-07 54.3 7.8 102 122-227 49-154 (377)
288 COG1565 Uncharacterized conser 96.3 0.021 4.5E-07 51.9 8.0 97 103-204 58-163 (370)
289 PRK01747 mnmC bifunctional tRN 96.3 0.03 6.6E-07 56.6 10.3 125 122-277 57-225 (662)
290 KOG1501 Arginine N-methyltrans 96.2 0.0096 2.1E-07 54.9 5.8 61 124-184 68-128 (636)
291 KOG2920 Predicted methyltransf 95.9 0.0029 6.2E-08 55.4 1.0 104 122-225 116-232 (282)
292 cd08254 hydroxyacyl_CoA_DH 6-h 95.9 0.11 2.4E-06 47.5 11.7 97 117-227 160-263 (338)
293 PHA01634 hypothetical protein 95.9 0.065 1.4E-06 41.0 7.9 47 122-168 28-74 (156)
294 PF03514 GRAS: GRAS domain fam 95.9 0.42 9.1E-06 44.7 15.2 113 112-228 100-244 (374)
295 TIGR00561 pntA NAD(P) transhyd 95.8 0.034 7.4E-07 53.6 7.9 97 121-225 162-282 (511)
296 COG3129 Predicted SAM-dependen 95.8 0.038 8.2E-07 46.8 7.0 81 122-202 78-165 (292)
297 KOG1099 SAM-dependent methyltr 95.8 0.012 2.7E-07 49.6 4.1 90 124-225 43-161 (294)
298 KOG2651 rRNA adenine N-6-methy 95.6 0.048 1E-06 49.6 7.4 56 108-163 139-194 (476)
299 PF02636 Methyltransf_28: Puta 95.6 0.052 1.1E-06 47.8 7.6 77 123-204 19-109 (252)
300 COG3315 O-Methyltransferase in 95.4 0.62 1.4E-05 42.0 14.1 162 114-277 85-262 (297)
301 PF03269 DUF268: Caenorhabditi 95.4 0.034 7.4E-07 44.4 5.2 132 123-280 2-146 (177)
302 TIGR02822 adh_fam_2 zinc-bindi 95.4 0.23 5E-06 45.6 11.6 94 117-227 160-254 (329)
303 KOG2671 Putative RNA methylase 95.4 0.017 3.7E-07 51.7 3.7 82 115-197 201-291 (421)
304 cd05188 MDR Medium chain reduc 95.3 0.077 1.7E-06 46.7 8.0 96 119-227 131-232 (271)
305 cd08230 glucose_DH Glucose deh 95.3 0.24 5.2E-06 45.9 11.5 97 120-228 170-270 (355)
306 COG0686 Ald Alanine dehydrogen 95.2 0.067 1.4E-06 47.5 6.9 97 124-225 169-266 (371)
307 PRK13699 putative methylase; P 95.2 0.062 1.3E-06 46.5 6.5 51 175-225 3-70 (227)
308 COG1867 TRM1 N2,N2-dimethylgua 95.0 0.21 4.5E-06 45.6 9.3 101 123-228 53-155 (380)
309 COG3510 CmcI Cephalosporin hyd 94.9 0.3 6.5E-06 40.3 9.3 105 122-232 69-185 (237)
310 cd08281 liver_ADH_like1 Zinc-d 94.9 0.47 1E-05 44.3 12.3 99 116-227 185-290 (371)
311 PRK11524 putative methyltransf 94.9 0.12 2.5E-06 46.5 7.9 46 121-167 207-252 (284)
312 TIGR03366 HpnZ_proposed putati 94.8 0.19 4.1E-06 44.9 9.1 98 117-227 115-218 (280)
313 COG4301 Uncharacterized conser 94.8 1.1 2.4E-05 38.7 12.7 125 99-226 58-192 (321)
314 cd08232 idonate-5-DH L-idonate 94.6 0.27 5.9E-06 45.1 9.7 93 121-226 164-261 (339)
315 TIGR03451 mycoS_dep_FDH mycoth 94.5 0.43 9.3E-06 44.3 10.9 99 116-227 170-276 (358)
316 cd00315 Cyt_C5_DNA_methylase C 94.5 0.098 2.1E-06 46.7 6.2 66 125-198 2-70 (275)
317 cd08239 THR_DH_like L-threonin 94.5 0.12 2.6E-06 47.6 7.0 102 116-227 157-262 (339)
318 KOG1227 Putative methyltransfe 94.5 0.024 5.2E-07 49.9 2.2 100 123-227 195-297 (351)
319 KOG3924 Putative protein methy 94.5 0.21 4.4E-06 46.0 8.1 127 100-227 170-308 (419)
320 PF00107 ADH_zinc_N: Zinc-bind 94.4 0.1 2.3E-06 40.5 5.6 86 132-230 1-92 (130)
321 PF01555 N6_N4_Mtase: DNA meth 94.4 0.15 3.3E-06 43.7 7.1 50 112-163 182-231 (231)
322 PF10354 DUF2431: Domain of un 94.3 0.81 1.8E-05 37.4 10.8 128 129-281 3-154 (166)
323 PRK13699 putative methylase; P 94.3 0.25 5.3E-06 42.8 8.1 47 121-168 162-208 (227)
324 cd00401 AdoHcyase S-adenosyl-L 94.2 0.35 7.5E-06 45.7 9.4 97 112-227 190-289 (413)
325 KOG2539 Mitochondrial/chloropl 94.0 0.18 3.9E-06 47.4 6.8 109 122-231 200-319 (491)
326 KOG1253 tRNA methyltransferase 93.6 0.063 1.4E-06 50.6 3.3 103 121-227 108-216 (525)
327 cd08237 ribitol-5-phosphate_DH 93.6 0.6 1.3E-05 43.1 9.9 94 119-227 160-256 (341)
328 PF07279 DUF1442: Protein of u 93.5 1.3 2.9E-05 37.4 10.6 109 112-226 31-147 (218)
329 PF11899 DUF3419: Protein of u 93.5 0.57 1.2E-05 43.8 9.4 52 114-166 27-78 (380)
330 TIGR02825 B4_12hDH leukotriene 93.5 1.2 2.7E-05 40.5 11.7 98 115-226 131-236 (325)
331 PLN03154 putative allyl alcoho 93.4 0.53 1.2E-05 43.6 9.1 99 116-227 152-258 (348)
332 TIGR01202 bchC 2-desacetyl-2-h 93.3 0.42 9E-06 43.4 8.3 86 122-227 144-231 (308)
333 PF07757 AdoMet_MTase: Predict 93.3 0.16 3.5E-06 37.7 4.3 32 121-153 57-88 (112)
334 PF11312 DUF3115: Protein of u 93.2 0.22 4.7E-06 44.6 5.8 105 123-227 87-242 (315)
335 PTZ00357 methyltransferase; Pr 93.0 0.64 1.4E-05 46.0 9.0 98 124-222 702-830 (1072)
336 PF05711 TylF: Macrocin-O-meth 92.9 0.3 6.6E-06 42.6 6.3 118 108-227 60-212 (248)
337 TIGR03201 dearomat_had 6-hydro 92.8 0.68 1.5E-05 42.8 9.0 101 117-227 161-272 (349)
338 cd08294 leukotriene_B4_DH_like 92.8 1.4 3.1E-05 40.0 11.1 97 116-226 137-240 (329)
339 PLN02494 adenosylhomocysteinas 92.8 1.2 2.7E-05 42.5 10.5 97 112-226 242-340 (477)
340 PLN02740 Alcohol dehydrogenase 92.7 1.2 2.7E-05 41.7 10.7 99 116-227 192-300 (381)
341 cd08255 2-desacetyl-2-hydroxye 92.6 1.2 2.7E-05 39.3 10.2 96 117-226 92-189 (277)
342 cd08245 CAD Cinnamyl alcohol d 92.5 1.8 3.8E-05 39.5 11.3 97 118-227 158-256 (330)
343 PRK10309 galactitol-1-phosphat 92.3 0.72 1.6E-05 42.6 8.4 98 117-227 155-260 (347)
344 PF05430 Methyltransf_30: S-ad 92.3 0.085 1.8E-06 40.8 1.8 75 174-280 33-112 (124)
345 cd08234 threonine_DH_like L-th 92.2 1.6 3.5E-05 39.8 10.6 99 116-227 153-257 (334)
346 COG0270 Dcm Site-specific DNA 92.2 1.6 3.6E-05 40.0 10.4 123 123-273 3-141 (328)
347 cd08261 Zn_ADH7 Alcohol dehydr 92.0 1.9 4.1E-05 39.5 10.9 99 116-227 153-258 (337)
348 KOG2078 tRNA modification enzy 91.9 0.18 3.8E-06 46.8 3.6 63 120-183 247-310 (495)
349 TIGR02818 adh_III_F_hyde S-(hy 91.7 2.9 6.3E-05 39.0 11.8 102 116-227 179-287 (368)
350 PLN02586 probable cinnamyl alc 91.5 1.4 3.1E-05 40.9 9.5 97 119-227 180-278 (360)
351 cd05285 sorbitol_DH Sorbitol d 91.5 2.6 5.6E-05 38.7 11.1 99 116-227 156-265 (343)
352 COG0604 Qor NADPH:quinone redu 91.5 1 2.2E-05 41.3 8.3 104 114-228 134-242 (326)
353 cd08236 sugar_DH NAD(P)-depend 91.4 0.66 1.4E-05 42.6 7.2 98 117-227 154-258 (343)
354 cd08295 double_bond_reductase_ 91.4 1.3 2.8E-05 40.7 9.1 102 116-227 145-251 (338)
355 PLN02827 Alcohol dehydrogenase 91.4 0.94 2E-05 42.5 8.2 97 117-226 188-294 (378)
356 PF05206 TRM13: Methyltransfer 91.3 0.87 1.9E-05 40.1 7.3 75 110-185 6-86 (259)
357 cd08242 MDR_like Medium chain 91.3 2.1 4.5E-05 38.8 10.2 94 116-225 149-243 (319)
358 COG1568 Predicted methyltransf 91.1 1.3 2.9E-05 38.8 8.0 100 122-225 152-258 (354)
359 TIGR02819 fdhA_non_GSH formald 91.0 3.2 6.9E-05 39.2 11.4 105 117-228 180-300 (393)
360 PF04072 LCM: Leucine carboxyl 91.0 0.84 1.8E-05 38.0 6.7 88 124-212 80-181 (183)
361 PRK11524 putative methyltransf 90.9 0.21 4.6E-06 44.8 3.2 54 173-226 8-79 (284)
362 cd08293 PTGR2 Prostaglandin re 90.7 3.4 7.4E-05 37.9 11.2 98 117-227 147-254 (345)
363 TIGR00936 ahcY adenosylhomocys 90.7 1.8 4E-05 40.8 9.2 87 121-226 193-281 (406)
364 TIGR00518 alaDH alanine dehydr 90.6 0.51 1.1E-05 44.1 5.5 100 122-226 166-266 (370)
365 PF11899 DUF3419: Protein of u 90.6 0.52 1.1E-05 44.0 5.5 63 168-231 272-338 (380)
366 cd08277 liver_alcohol_DH_like 90.6 7.6 0.00017 36.1 13.4 102 116-227 178-286 (365)
367 cd05278 FDH_like Formaldehyde 90.4 2.6 5.6E-05 38.7 10.1 96 118-226 163-266 (347)
368 cd08285 NADP_ADH NADP(H)-depen 90.4 3.5 7.6E-05 38.0 11.0 99 116-227 160-266 (351)
369 PRK05476 S-adenosyl-L-homocyst 90.4 2.5 5.5E-05 40.1 9.9 86 122-226 211-298 (425)
370 COG4017 Uncharacterized protei 90.4 3.5 7.6E-05 34.2 9.3 87 114-220 36-123 (254)
371 TIGR00497 hsdM type I restrict 90.3 4.3 9.4E-05 39.7 11.9 105 122-226 217-354 (501)
372 COG2933 Predicted SAM-dependen 90.3 2.8 6.1E-05 36.6 9.1 89 119-220 208-296 (358)
373 KOG2918 Carboxymethyl transfer 90.3 7.6 0.00017 34.9 12.0 153 121-280 86-278 (335)
374 cd08300 alcohol_DH_class_III c 90.2 3.7 8.1E-05 38.2 11.1 99 116-227 180-288 (368)
375 KOG0022 Alcohol dehydrogenase, 90.1 5.8 0.00013 35.7 11.2 101 115-229 185-296 (375)
376 COG1062 AdhC Zn-dependent alco 89.7 3.4 7.3E-05 37.6 9.5 103 113-228 176-286 (366)
377 cd08231 MDR_TM0436_like Hypoth 89.6 5.5 0.00012 36.8 11.7 93 121-226 176-279 (361)
378 KOG0821 Predicted ribosomal RN 89.6 1.1 2.3E-05 38.0 5.9 74 109-184 37-110 (326)
379 KOG1098 Putative SAM-dependent 89.6 0.96 2.1E-05 44.1 6.4 104 119-235 41-165 (780)
380 cd08296 CAD_like Cinnamyl alco 89.5 1.9 4.1E-05 39.5 8.3 97 118-227 159-259 (333)
381 KOG1269 SAM-dependent methyltr 89.0 2.3 5E-05 39.5 8.3 106 123-231 181-317 (364)
382 cd08298 CAD2 Cinnamyl alcohol 88.9 3.6 7.8E-05 37.4 9.7 95 116-227 161-256 (329)
383 cd08238 sorbose_phosphate_red 88.9 5.2 0.00011 37.9 11.0 101 118-226 171-287 (410)
384 cd08233 butanediol_DH_like (2R 88.8 1.3 2.9E-05 40.8 6.9 102 116-227 166-272 (351)
385 cd08278 benzyl_alcohol_DH Benz 88.7 1.1 2.4E-05 41.7 6.3 97 117-226 181-284 (365)
386 cd08301 alcohol_DH_plants Plan 88.7 6.2 0.00013 36.7 11.3 99 116-227 181-289 (369)
387 PLN02514 cinnamyl-alcohol dehy 88.6 6.1 0.00013 36.6 11.2 96 120-227 178-275 (357)
388 PRK05786 fabG 3-ketoacyl-(acyl 87.9 9.8 0.00021 32.6 11.4 102 122-227 4-135 (238)
389 KOG1201 Hydroxysteroid 17-beta 87.9 4.8 0.0001 36.0 9.1 78 122-203 37-127 (300)
390 PF02254 TrkA_N: TrkA-N domain 87.6 3.4 7.4E-05 31.1 7.4 84 131-225 4-94 (116)
391 KOG2912 Predicted DNA methylas 87.2 2 4.2E-05 38.6 6.3 97 104-200 82-188 (419)
392 PLN02178 cinnamyl-alcohol dehy 87.1 2.5 5.5E-05 39.5 7.6 94 121-227 177-273 (375)
393 PRK03659 glutathione-regulated 87.1 13 0.00029 37.2 13.0 87 124-225 401-496 (601)
394 PRK08306 dipicolinate synthase 86.7 6.9 0.00015 35.4 9.9 88 122-225 151-239 (296)
395 cd08265 Zn_ADH3 Alcohol dehydr 86.6 4.9 0.00011 37.7 9.3 100 118-226 199-306 (384)
396 KOG2782 Putative SAM dependent 86.5 0.47 1E-05 40.0 2.0 94 109-203 30-131 (303)
397 PF00145 DNA_methylase: C-5 cy 86.4 1.1 2.5E-05 40.8 4.8 122 125-276 2-139 (335)
398 PTZ00075 Adenosylhomocysteinas 86.4 15 0.00032 35.5 12.2 86 122-226 253-340 (476)
399 cd08279 Zn_ADH_class_III Class 85.9 2.1 4.5E-05 39.8 6.4 99 116-227 176-282 (363)
400 PF05050 Methyltransf_21: Meth 85.7 2.9 6.3E-05 33.6 6.5 54 128-181 1-61 (167)
401 PF02719 Polysacc_synt_2: Poly 85.7 2.6 5.7E-05 37.7 6.5 74 131-204 5-91 (293)
402 PRK05854 short chain dehydroge 85.6 14 0.00031 33.4 11.6 78 122-200 13-103 (313)
403 cd08286 FDH_like_ADH2 formalde 85.5 5.5 0.00012 36.5 9.0 100 117-226 161-265 (345)
404 PRK07576 short chain dehydroge 85.3 11 0.00025 33.0 10.5 74 122-198 8-94 (264)
405 cd08263 Zn_ADH10 Alcohol dehyd 85.0 11 0.00024 34.9 10.8 96 118-226 183-286 (367)
406 PRK08324 short chain dehydroge 85.0 8.6 0.00019 39.2 10.7 101 122-226 421-556 (681)
407 cd08241 QOR1 Quinone oxidoredu 84.8 4.5 9.9E-05 36.2 8.0 97 117-227 134-238 (323)
408 KOG2352 Predicted spermine/spe 84.7 1.8 3.8E-05 41.3 5.1 108 122-230 295-419 (482)
409 cd05281 TDH Threonine dehydrog 84.6 3.3 7.1E-05 38.0 7.0 97 119-226 160-261 (341)
410 cd05279 Zn_ADH1 Liver alcohol 84.6 3 6.4E-05 38.8 6.7 102 116-227 177-285 (365)
411 PRK03562 glutathione-regulated 84.4 23 0.0005 35.7 13.3 89 124-225 401-496 (621)
412 cd05283 CAD1 Cinnamyl alcohol 84.3 11 0.00023 34.5 10.3 97 118-227 165-263 (337)
413 COG5379 BtaA S-adenosylmethion 84.2 3.4 7.3E-05 36.7 6.2 49 118-167 59-107 (414)
414 PRK08265 short chain dehydroge 84.2 12 0.00027 32.7 10.3 72 123-200 6-90 (261)
415 cd08291 ETR_like_1 2-enoyl thi 84.0 14 0.00029 33.6 10.8 92 122-227 142-242 (324)
416 cd08274 MDR9 Medium chain dehy 83.8 14 0.0003 33.9 10.9 96 116-226 171-272 (350)
417 PF02737 3HCDH_N: 3-hydroxyacy 83.7 4.3 9.4E-05 33.6 6.6 94 125-225 1-112 (180)
418 cd08243 quinone_oxidoreductase 83.6 16 0.00034 32.7 11.0 95 117-227 137-238 (320)
419 PRK10083 putative oxidoreducta 83.4 7 0.00015 35.7 8.7 103 115-227 153-259 (339)
420 KOG0023 Alcohol dehydrogenase, 83.2 4.3 9.3E-05 36.6 6.6 99 116-228 175-280 (360)
421 KOG1197 Predicted quinone oxid 83.1 18 0.0004 31.7 10.1 117 99-226 117-244 (336)
422 cd08240 6_hydroxyhexanoate_dh_ 82.6 18 0.00039 33.2 11.1 95 120-227 173-274 (350)
423 cd08266 Zn_ADH_like1 Alcohol d 82.5 3.7 8E-05 37.3 6.4 95 116-226 160-264 (342)
424 cd08260 Zn_ADH6 Alcohol dehydr 82.1 17 0.00036 33.3 10.7 97 117-226 160-263 (345)
425 PRK10458 DNA cytosine methylas 82.1 9.7 0.00021 36.7 9.1 59 123-184 88-146 (467)
426 cd08235 iditol_2_DH_like L-idi 82.0 17 0.00037 33.2 10.7 97 117-226 160-264 (343)
427 TIGR00692 tdh L-threonine 3-de 81.9 14 0.00031 33.7 10.1 97 120-226 159-260 (340)
428 cd05289 MDR_like_2 alcohol deh 81.5 22 0.00049 31.4 11.1 93 119-226 141-237 (309)
429 PRK07109 short chain dehydroge 81.3 24 0.00053 32.3 11.3 75 123-200 8-95 (334)
430 PRK08267 short chain dehydroge 81.2 14 0.00031 32.2 9.5 72 125-201 3-88 (260)
431 cd08282 PFDH_like Pseudomonas 80.6 24 0.00052 32.9 11.2 102 116-227 170-285 (375)
432 PRK07904 short chain dehydroge 80.2 13 0.00027 32.6 8.7 78 121-200 6-97 (253)
433 cd08284 FDH_like_2 Glutathione 80.0 27 0.00059 31.8 11.3 95 118-226 163-265 (344)
434 cd08269 Zn_ADH9 Alcohol dehydr 79.7 30 0.00065 30.9 11.3 98 117-227 124-229 (312)
435 cd05286 QOR2 Quinone oxidoredu 79.5 25 0.00055 31.2 10.8 96 117-226 131-234 (320)
436 cd08258 Zn_ADH4 Alcohol dehydr 79.5 21 0.00046 32.1 10.2 102 116-228 158-265 (306)
437 PRK12939 short chain dehydroge 79.3 17 0.00036 31.4 9.2 76 122-200 6-94 (250)
438 cd08267 MDR1 Medium chain dehy 78.8 33 0.00072 30.6 11.3 99 119-227 140-240 (319)
439 cd05284 arabinose_DH_like D-ar 78.7 5.3 0.00011 36.5 6.1 96 119-227 164-266 (340)
440 PF12692 Methyltransf_17: S-ad 78.5 9.1 0.0002 30.4 6.2 110 106-225 13-132 (160)
441 PRK05396 tdh L-threonine 3-deh 78.4 19 0.00041 32.9 9.7 94 121-227 162-263 (341)
442 PRK06701 short chain dehydroge 78.4 32 0.00069 30.7 10.9 102 122-226 45-180 (290)
443 PRK07066 3-hydroxybutyryl-CoA 78.2 9.7 0.00021 34.8 7.4 95 124-224 8-116 (321)
444 cd05288 PGDH Prostaglandin deh 78.2 24 0.00053 31.8 10.3 96 118-226 141-243 (329)
445 PRK06035 3-hydroxyacyl-CoA deh 78.2 13 0.00029 33.3 8.4 94 124-224 4-118 (291)
446 PLN03209 translocon at the inn 78.2 27 0.00058 34.7 10.8 83 117-200 74-169 (576)
447 cd08287 FDH_like_ADH3 formalde 78.0 7.4 0.00016 35.6 6.9 98 117-227 163-268 (345)
448 PLN02702 L-idonate 5-dehydroge 78.0 37 0.00081 31.3 11.6 102 116-227 175-285 (364)
449 cd08270 MDR4 Medium chain dehy 78.0 30 0.00066 30.8 10.8 91 120-227 130-222 (305)
450 PRK06181 short chain dehydroge 77.9 23 0.00049 30.9 9.7 74 124-200 2-88 (263)
451 PRK09072 short chain dehydroge 77.7 27 0.00059 30.4 10.2 75 123-201 5-91 (263)
452 PRK06128 oxidoreductase; Provi 77.6 41 0.00089 30.2 11.5 102 122-226 54-190 (300)
453 PRK13771 putative alcohol dehy 77.4 13 0.00029 33.7 8.4 96 118-227 158-255 (334)
454 cd05213 NAD_bind_Glutamyl_tRNA 77.1 12 0.00025 34.1 7.7 100 118-232 173-276 (311)
455 PRK07533 enoyl-(acyl carrier p 76.7 39 0.00084 29.5 10.8 102 122-226 9-147 (258)
456 PF12242 Eno-Rase_NADH_b: NAD( 76.7 13 0.00027 25.9 5.8 47 108-154 24-73 (78)
457 PRK10754 quinone oxidoreductas 76.6 29 0.00063 31.4 10.3 96 117-226 135-238 (327)
458 PF10237 N6-adenineMlase: Prob 76.1 30 0.00065 28.1 8.9 94 122-226 25-122 (162)
459 TIGR00853 pts-lac PTS system, 76.0 9.8 0.00021 27.8 5.6 72 124-221 4-75 (95)
460 KOG2360 Proliferation-associat 76.0 6.2 0.00013 36.5 5.4 73 112-185 203-277 (413)
461 COG1748 LYS9 Saccharopine dehy 75.5 7.1 0.00015 36.6 5.8 70 124-198 2-76 (389)
462 PRK07063 short chain dehydroge 75.4 19 0.00042 31.3 8.6 77 123-200 7-96 (260)
463 PRK07819 3-hydroxybutyryl-CoA 75.3 25 0.00054 31.6 9.2 95 124-225 6-119 (286)
464 COG1086 Predicted nucleoside-d 75.2 29 0.00062 34.1 9.9 82 122-204 249-339 (588)
465 cd08244 MDR_enoyl_red Possible 75.1 40 0.00087 30.2 10.8 97 116-226 136-240 (324)
466 PRK05808 3-hydroxybutyryl-CoA 75.1 24 0.00052 31.4 9.1 93 125-224 5-115 (282)
467 PRK06500 short chain dehydroge 74.9 53 0.0012 28.1 11.2 72 123-200 6-90 (249)
468 PF02826 2-Hacid_dh_C: D-isome 74.8 5.7 0.00012 32.8 4.7 89 122-224 35-124 (178)
469 TIGR00675 dcm DNA-methyltransf 74.7 6.1 0.00013 36.0 5.2 65 126-198 1-67 (315)
470 PRK12429 3-hydroxybutyrate deh 74.4 46 0.001 28.7 10.7 76 123-201 4-92 (258)
471 PRK08594 enoyl-(acyl carrier p 74.1 44 0.00096 29.1 10.5 105 122-227 6-147 (257)
472 cd08297 CAD3 Cinnamyl alcohol 74.1 48 0.001 30.2 11.1 97 118-227 161-265 (341)
473 PRK09260 3-hydroxybutyryl-CoA 73.6 14 0.00031 33.0 7.3 95 125-225 3-115 (288)
474 PRK09422 ethanol-active dehydr 73.4 14 0.0003 33.7 7.4 99 116-227 156-261 (338)
475 cd08268 MDR2 Medium chain dehy 73.3 68 0.0015 28.6 12.1 96 117-226 139-242 (328)
476 PRK05708 2-dehydropantoate 2-r 73.2 25 0.00055 31.8 8.8 95 124-226 3-103 (305)
477 COG0863 DNA modification methy 73.1 19 0.00041 32.3 8.0 49 119-168 219-267 (302)
478 cd08292 ETR_like_2 2-enoyl thi 72.9 32 0.0007 30.9 9.6 96 117-226 134-237 (324)
479 PRK11154 fadJ multifunctional 72.8 20 0.00044 36.7 8.9 96 124-225 310-423 (708)
480 PRK10669 putative cation:proto 72.8 19 0.00041 35.8 8.5 88 124-225 418-513 (558)
481 PTZ00354 alcohol dehydrogenase 72.7 72 0.0016 28.7 12.7 96 118-227 136-240 (334)
482 TIGR02817 adh_fam_1 zinc-bindi 72.3 41 0.0009 30.4 10.3 90 123-226 149-246 (336)
483 PRK08293 3-hydroxybutyryl-CoA 72.2 19 0.00042 32.2 7.8 95 124-224 4-117 (287)
484 PRK06522 2-dehydropantoate 2-r 72.1 33 0.00071 30.8 9.4 93 124-225 1-98 (304)
485 PRK07417 arogenate dehydrogena 71.6 18 0.00039 32.3 7.4 84 125-223 2-87 (279)
486 PRK06940 short chain dehydroge 71.5 72 0.0016 28.1 11.4 98 125-226 4-124 (275)
487 cd05564 PTS_IIB_chitobiose_lic 71.0 14 0.0003 27.0 5.4 73 129-226 4-77 (96)
488 PRK07806 short chain dehydroge 71.0 67 0.0014 27.5 12.4 102 122-226 5-133 (248)
489 cd08246 crotonyl_coA_red croto 70.9 48 0.001 31.0 10.5 46 118-163 189-236 (393)
490 cd08250 Mgc45594_like Mgc45594 70.6 67 0.0015 28.9 11.2 96 117-226 134-236 (329)
491 KOG0725 Reductases with broad 70.4 78 0.0017 28.1 11.5 80 122-202 7-101 (270)
492 PF01262 AlaDh_PNT_C: Alanine 69.7 1.1 2.3E-05 36.8 -0.9 95 122-224 19-136 (168)
493 cd08262 Zn_ADH8 Alcohol dehydr 69.6 66 0.0014 29.2 11.0 98 116-226 155-263 (341)
494 PF07109 Mg-por_mtran_C: Magne 69.5 29 0.00062 25.5 6.6 80 197-282 2-85 (97)
495 PF02086 MethyltransfD12: D12 69.4 9.4 0.0002 33.5 5.1 56 110-166 8-63 (260)
496 cd08289 MDR_yhfp_like Yhfp put 69.2 14 0.0003 33.4 6.3 92 122-227 146-243 (326)
497 PF06016 Reovirus_L2: Reovirus 69.2 9 0.0002 40.9 5.4 165 118-292 818-995 (1289)
498 KOG2811 Uncharacterized conser 69.1 71 0.0015 29.6 10.3 62 122-185 182-247 (420)
499 cd08252 AL_MDR Arginate lyase 68.8 90 0.0019 28.2 11.7 91 123-226 150-247 (336)
500 TIGR02823 oxido_YhdH putative 68.7 28 0.00061 31.3 8.3 95 119-227 141-241 (323)
No 1
>PLN02244 tocopherol O-methyltransferase
Probab=100.00 E-value=2.5e-31 Score=243.51 Aligned_cols=219 Identities=28% Similarity=0.453 Sum_probs=181.9
Q ss_pred ccccchhhHHHHhhhhhHHHHHhhcCCceeecCCCC---CCCHHHHHHHHHHHHHHhcCC-----CCCCEEEEECCCCCh
Q 018194 64 TTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIP---GKSHRDATRLHEEMAVDLIDV-----KAGDRILDVGCGVGG 135 (359)
Q Consensus 64 ~~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~vLDiGcG~G~ 135 (359)
.......+.|..|||..+++|+..|++++|++.... ..++.+++..+.+.+++.+.+ .++.+|||||||+|.
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~ 131 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGG 131 (340)
T ss_pred cchhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCH
Confidence 334456778999999999999999999998765443 357888888888888888877 678999999999999
Q ss_pred HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHh
Q 018194 136 PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFR 215 (359)
Q Consensus 136 ~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~ 215 (359)
++..+++..+++|+|+|+|+.|++.++++....++.++++++++|+.++++++++||+|++..+++|++|...+++++.+
T Consensus 132 ~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~r 211 (340)
T PLN02244 132 SSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELAR 211 (340)
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHH
Confidence 99999986688999999999999999999988888778999999999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEEeeeCcccc---cCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 018194 216 VLKPGSLYVSYEWVTTDKYE---AENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAK 282 (359)
Q Consensus 216 ~LkpgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~ 282 (359)
+|||||++++.++....... ............+......+.+.+.+++.++|+++||++++.++++.
T Consensus 212 vLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~ 281 (340)
T PLN02244 212 VAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSE 281 (340)
T ss_pred HcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcH
Confidence 99999999998876532111 11222333333333344456677899999999999999999988753
No 2
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.97 E-value=8.6e-31 Score=230.96 Aligned_cols=260 Identities=24% Similarity=0.345 Sum_probs=181.4
Q ss_pred cchhhHHHHhhhhhHHHHHhhcCCceeecCCC---CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh
Q 018194 67 EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSI---PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH 143 (359)
Q Consensus 67 ~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 143 (359)
++..+.|+.|||..++||..+++++++|+..+ +.+++.+++.+..+.+++.+++++|++|||||||.|.++..+++.
T Consensus 4 ~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~ 83 (273)
T PF02353_consen 4 KQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAER 83 (273)
T ss_dssp ---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHH
T ss_pred chHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH
Confidence 45567899999999999999999999999753 667799999999999999999999999999999999999999997
Q ss_pred cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccccc--CCHHHHHHHHHhccCCCC
Q 018194 144 SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA--PKLEDVYAEVFRVLKPGS 221 (359)
Q Consensus 144 ~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG 221 (359)
.|++|+|+++|+++.+.+++++.+.|+.+++++...|..+++ .+||.|++..+++|+ .+...+++++.++|||||
T Consensus 84 ~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG 160 (273)
T PF02353_consen 84 YGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGG 160 (273)
T ss_dssp H--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTE
T ss_pred cCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCc
Confidence 799999999999999999999999999999999999998764 399999999999999 478999999999999999
Q ss_pred EEEEEEeeeCcccccC-ch-HHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchhhhhhccchhH
Q 018194 222 LYVSYEWVTTDKYEAE-NK-EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299 (359)
Q Consensus 222 ~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~~ 299 (359)
++++..+......... .. ....+...++++..+| +..++...++++||++.+.+++..++ ......
T Consensus 161 ~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lp---s~~~~~~~~~~~~l~v~~~~~~~~hY---------~~Tl~~ 228 (273)
T PF02353_consen 161 RLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLP---SLSEILRAAEDAGLEVEDVENLGRHY---------ARTLRA 228 (273)
T ss_dssp EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS------BHHHHHHHHHHTT-EEEEEEE-HHHH---------HHHHHH
T ss_pred EEEEEecccccccchhhcCCCceEEEEeeCCCCCCC---CHHHHHHHHhcCCEEEEEEEEcCcCH---------HHHHHH
Confidence 9999776664432211 11 1133445556555444 67889999999999999998874322 223455
Q ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCcccc
Q 018194 300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGI 341 (359)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 341 (359)
|...+.....+...+..+...+..+.+...+......|...+
T Consensus 229 W~~~f~~~~~~i~~~~~~~f~r~w~~yl~~~~~~F~~g~~~~ 270 (273)
T PF02353_consen 229 WRENFDANREEIIALFDEEFYRMWRYYLAYCAAGFRAGSIDV 270 (273)
T ss_dssp HHHHHHHTHHHHHHHSHHHHHHHHHHHHHHHHHHHHTTSCEE
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHCCCCeE
Confidence 655555554444444333345566666667666666665543
No 3
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=9.8e-29 Score=214.02 Aligned_cols=260 Identities=24% Similarity=0.362 Sum_probs=201.5
Q ss_pred ccchhhHHHHhhhhhHHHHHhhcCCceeecCCC---CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh
Q 018194 66 KEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSI---PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA 142 (359)
Q Consensus 66 ~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~ 142 (359)
.....+.|..|||+.++||..++++++.|++.+ +..++.+++....+.+++.++++||++|||||||.|.++..+|+
T Consensus 13 ~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~ 92 (283)
T COG2230 13 KRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAE 92 (283)
T ss_pred ccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHH
Confidence 345677899999999999999999999999874 33479999999999999999999999999999999999999999
Q ss_pred hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCC
Q 018194 143 HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPG 220 (359)
Q Consensus 143 ~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~Lkpg 220 (359)
..+++|+|+++|++|.+.+++++...|+..++++...|..++. +.||.|++..+++|+. +...+++.+.++|+||
T Consensus 93 ~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 93 EYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG 169 (283)
T ss_pred HcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence 8899999999999999999999999999999999999998864 4599999999999996 4999999999999999
Q ss_pred CEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchhhhhhccchhHH
Q 018194 221 SLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYW 300 (359)
Q Consensus 221 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~~~ 300 (359)
|.+++........... .....+...++++..+| +.+++.+..+++||.+.+.+.+..++ . .....|
T Consensus 170 G~~llh~I~~~~~~~~--~~~~~i~~yiFPgG~lP---s~~~i~~~~~~~~~~v~~~~~~~~hY-----a----~Tl~~W 235 (283)
T COG2230 170 GRMLLHSITGPDQEFR--RFPDFIDKYIFPGGELP---SISEILELASEAGFVVLDVESLRPHY-----A----RTLRLW 235 (283)
T ss_pred ceEEEEEecCCCcccc--cchHHHHHhCCCCCcCC---CHHHHHHHHHhcCcEEehHhhhcHHH-----H----HHHHHH
Confidence 9999987665432221 33344556666666555 56889999999999999887774433 1 122334
Q ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCccccc
Q 018194 301 RNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIF 342 (359)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 342 (359)
...+-...-+...+-.+...+....+...+......+...++
T Consensus 236 ~~~f~~~~~~a~~~~~e~~~r~w~~yl~~~~~~Fr~~~~~~~ 277 (283)
T COG2230 236 RERFEANRDEAIALYDERFYRMWELYLAACAAAFRAGYIDVF 277 (283)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCceEE
Confidence 444444433333332222334445555555555555544433
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.97 E-value=1.9e-29 Score=215.01 Aligned_cols=199 Identities=29% Similarity=0.471 Sum_probs=156.0
Q ss_pred ccccchhhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh
Q 018194 64 TTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH 143 (359)
Q Consensus 64 ~~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 143 (359)
.....+++.|++.||.++++.+.+. ...+.+.+...+...+|.+|||||||||.++..+++.
T Consensus 11 ~~v~~vF~~ia~~YD~~n~~~S~g~------------------~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~ 72 (238)
T COG2226 11 EKVQKVFDKVAKKYDLMNDLMSFGL------------------HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKS 72 (238)
T ss_pred HHHHHHHHhhHHHHHhhcccccCcc------------------hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHh
Confidence 3445667777888888776655432 3567778888888889999999999999999999985
Q ss_pred -cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCE
Q 018194 144 -SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSL 222 (359)
Q Consensus 144 -~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 222 (359)
..++|+|+|+|+.|++.|+++..+.+... ++|+++|++++||++++||+|.+.+.|.+++|++.+|+|++|+|||||+
T Consensus 73 ~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~ 151 (238)
T COG2226 73 VGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGR 151 (238)
T ss_pred cCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeE
Confidence 34799999999999999999999887665 9999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeCcccccCchHHHHHHhhhhcC-------CC---------CCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194 223 YVSYEWVTTDKYEAENKEHVDIIQGIERG-------DA---------LPGLRSYAEITEIAKRVGFEVVKEKDLA 281 (359)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---------~~~~~~~~~~~~~l~~aGF~~i~~~~~~ 281 (359)
+++.|+..+................+.+. .. ...+.+.+++.++++++||+.+..+.+.
T Consensus 152 ~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~ 226 (238)
T COG2226 152 LLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLT 226 (238)
T ss_pred EEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeee
Confidence 99999877543222111111111101110 00 1135688999999999999999866653
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.96 E-value=2.3e-29 Score=217.22 Aligned_cols=198 Identities=29% Similarity=0.440 Sum_probs=96.1
Q ss_pred ccccchhhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh
Q 018194 64 TTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH 143 (359)
Q Consensus 64 ~~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 143 (359)
+....+++.++..||..+++...+.+ +.+.+.+++.+...+|.+|||+|||||.++..+++.
T Consensus 7 ~~v~~~Fd~ia~~YD~~n~~ls~g~~------------------~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~ 68 (233)
T PF01209_consen 7 QYVRKMFDRIAPRYDRMNDLLSFGQD------------------RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARR 68 (233)
T ss_dssp ------------------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCCccccCCcHH------------------HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHH
Confidence 34556677777788877766544321 334456677777888999999999999999999985
Q ss_pred --cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCC
Q 018194 144 --SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGS 221 (359)
Q Consensus 144 --~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG 221 (359)
+..+|+|+|+|+.|++.|+++....+.. +|+++++|++++|+++++||+|++.+.+++++|+..+++|++|+|||||
T Consensus 69 ~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG 147 (233)
T PF01209_consen 69 VGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGG 147 (233)
T ss_dssp SS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEE
T ss_pred CCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCe
Confidence 3479999999999999999999987765 8999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeCcccccCchHHHH-------HHhhhhcCC---------CCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194 222 LYVSYEWVTTDKYEAENKEHVD-------IIQGIERGD---------ALPGLRSYAEITEIAKRVGFEVVKEKDLA 281 (359)
Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~~~~~~~~~~l~~aGF~~i~~~~~~ 281 (359)
++++.|+..+.... ....+.. +...+..+. ....+.+.+++.++|+++||+.++.+.+.
T Consensus 148 ~l~ile~~~p~~~~-~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~ 222 (233)
T PF01209_consen 148 RLVILEFSKPRNPL-LRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLT 222 (233)
T ss_dssp EEEEEEEEB-SSHH-HHHHHHH------------------------------------------------------
T ss_pred EEEEeeccCCCCch-hhceeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999987754311 0011111 111111111 12236678999999999999998877663
No 6
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.95 E-value=1.3e-26 Score=193.13 Aligned_cols=196 Identities=23% Similarity=0.376 Sum_probs=156.0
Q ss_pred cchhhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--
Q 018194 67 EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS-- 144 (359)
Q Consensus 67 ~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-- 144 (359)
...++.|++.||.++|....+. ++.+.+.....+....++++||++||||..+..+.++.
T Consensus 63 ~~vF~~vA~~YD~mND~mSlGi------------------HRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s 124 (296)
T KOG1540|consen 63 HHVFESVAKKYDIMNDAMSLGI------------------HRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKS 124 (296)
T ss_pred HHHHHHHHHHHHHHHHHhhcch------------------hHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhcc
Confidence 5788999999999999877543 35567888889999999999999999999999998752
Q ss_pred -----CCEEEEEeCCHHHHHHHHHHHHHcCCCCC--eEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhcc
Q 018194 145 -----RANVVGITINEYQVNRARLHNKKAGLDSL--CEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVL 217 (359)
Q Consensus 145 -----~~~v~g~D~s~~~~~~a~~~~~~~~~~~~--i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L 217 (359)
+.+|+++|+||.|+..++++..+.++.++ +.++++|++++||++++||..++.+.+.+++++++.|++++|+|
T Consensus 125 ~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVL 204 (296)
T KOG1540|consen 125 QFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVL 204 (296)
T ss_pred ccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhc
Confidence 26899999999999999999988887665 89999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEeeeCcc-c-----ccCchHHHHHHhhhhcC---------CCCCCCCCHHHHHHHHHhCCCeEEE-EEec
Q 018194 218 KPGSLYVSYEWVTTDK-Y-----EAENKEHVDIIQGIERG---------DALPGLRSYAEITEIAKRVGFEVVK-EKDL 280 (359)
Q Consensus 218 kpgG~l~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~aGF~~i~-~~~~ 280 (359)
||||++.+.++...++ . ..........+..+..+ .....+.+.+++..+.+++||..+. .+.+
T Consensus 205 KpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~~ye~l 283 (296)
T KOG1540|consen 205 KPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVNGYENL 283 (296)
T ss_pred CCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCccccccccc
Confidence 9999999998876542 0 00000000001111111 1123466889999999999999986 4443
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.94 E-value=2.5e-25 Score=196.61 Aligned_cols=170 Identities=22% Similarity=0.320 Sum_probs=130.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHH--cCCCCCeEEEEcCCCCCC
Q 018194 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKK--AGLDSLCEVVCGNFLKMP 185 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~--~~~~~~i~~~~~d~~~~~ 185 (359)
+...+.+.+.+.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|+++... .....+++++++|+.++|
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 34455566777889999999999999999998753 46999999999999999877542 122347999999999999
Q ss_pred CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHH-hh----hhc--CC------
Q 018194 186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDII-QG----IER--GD------ 252 (359)
Q Consensus 186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-~~----~~~--~~------ 252 (359)
+++++||+|++.++++|++|+..++++++|+|||||++++.++....... ......+. .. +.. +.
T Consensus 141 ~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 218 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPF--TTSMQEWMIDNVVVPVATGYGLAKEYEY 218 (261)
T ss_pred CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHH--HHHHHHHHHhhhhhHHHHHhCChHHHHH
Confidence 99999999999999999999999999999999999999999887643210 01110100 00 000 00
Q ss_pred ---CCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194 253 ---ALPGLRSYAEITEIAKRVGFEVVKEKDLA 281 (359)
Q Consensus 253 ---~~~~~~~~~~~~~~l~~aGF~~i~~~~~~ 281 (359)
....+.+.+++.++|+++||++++...+.
T Consensus 219 l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 219 LKSSINEYLTGEELEKLALEAGFSSAKHYEIS 250 (261)
T ss_pred HHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcC
Confidence 11246789999999999999999887763
No 8
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.94 E-value=2.7e-24 Score=199.21 Aligned_cols=263 Identities=19% Similarity=0.243 Sum_probs=193.9
Q ss_pred cccchhhHHHHhhhhhHHHHHhhcCCceeecCCCC--CCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh
Q 018194 65 TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIP--GKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA 142 (359)
Q Consensus 65 ~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~ 142 (359)
++....+.++.|||..+++|..+++++++|+..+. ..++.+++....+.+++.+.+.++.+|||||||+|.++..+++
T Consensus 108 ~~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~ 187 (383)
T PRK11705 108 SKKRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAE 187 (383)
T ss_pred ChhhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHH
Confidence 34456678889999999999999999998887653 4678999999999999999999999999999999999999998
Q ss_pred hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCC
Q 018194 143 HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPG 220 (359)
Q Consensus 143 ~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~Lkpg 220 (359)
..+++|+|+|+|+.|++.++++.. ++ ++++...|..++ +++||.|++..+++|++ ++..+++++.++||||
T Consensus 188 ~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG 260 (383)
T PRK11705 188 HYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD 260 (383)
T ss_pred HCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 778899999999999999999874 22 478888888765 47899999999999985 4689999999999999
Q ss_pred CEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchhhhhhccchhHH
Q 018194 221 SLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYW 300 (359)
Q Consensus 221 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~~~ 300 (359)
|++++.++........... .+...++.+. .+.+..++.+.++ .||++.+.+++..+ +. .....|
T Consensus 261 G~lvl~~i~~~~~~~~~~~---~i~~yifp~g---~lps~~~i~~~~~-~~~~v~d~~~~~~h-----y~----~TL~~W 324 (383)
T PRK11705 261 GLFLLHTIGSNKTDTNVDP---WINKYIFPNG---CLPSVRQIAQASE-GLFVMEDWHNFGAD-----YD----RTLMAW 324 (383)
T ss_pred cEEEEEEccCCCCCCCCCC---CceeeecCCC---cCCCHHHHHHHHH-CCcEEEEEecChhh-----HH----HHHHHH
Confidence 9999977654332111111 1112222222 2446778877766 58999888776432 22 224455
Q ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCccccccceeeEEEecCC
Q 018194 301 RNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPH 354 (359)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~arKP~ 354 (359)
...+....-+....-.+...+...++...++...+.|....+. ++..||.
T Consensus 325 ~~~f~~~~~~~~~~~~~~~~r~w~~yl~~~~~~F~~~~~~~~q----~~~~~~~ 374 (383)
T PRK11705 325 HENFEAAWPELADNYSERFYRMWRYYLLSCAGAFRARDIQLWQ----VVFSPRG 374 (383)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCceEEE----EEEEeCC
Confidence 5554444333333334445567777777888877777666554 5666644
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.93 E-value=2.7e-24 Score=190.16 Aligned_cols=244 Identities=21% Similarity=0.281 Sum_probs=165.1
Q ss_pred hhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHH
Q 018194 78 NLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQ 157 (359)
Q Consensus 78 d~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~ 157 (359)
+..-..|+..+|..+..... ......++..+.+.++.+|||||||+|..+..+++..+++|+|+|+|+.|
T Consensus 18 ~~~~~~~e~~~g~~~~~~gg----------~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~ 87 (263)
T PTZ00098 18 DEGIKAYEFIFGEDYISSGG----------IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKM 87 (263)
T ss_pred cccchhHHHHhCCCCCCCCc----------hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHH
Confidence 34457888888754432111 11235567778889999999999999999999987667899999999999
Q ss_pred HHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccc
Q 018194 158 VNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYE 235 (359)
Q Consensus 158 ~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 235 (359)
++.++++... ..++.+..+|+.+.++++++||+|++..+++|++ ++..++++++++|||||++++.++..... .
T Consensus 88 ~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~-~ 163 (263)
T PTZ00098 88 VNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKI-E 163 (263)
T ss_pred HHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccc-c
Confidence 9999988653 3579999999998888889999999999999986 78999999999999999999988765432 1
Q ss_pred cCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchhhhhhccchhHHHHHHHHHHHHHhccC
Q 018194 236 AENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIA 315 (359)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
.......... .. ....+.+..++.++|+++||++++.++++. .+..... .. ... +....+.+ .
T Consensus 164 ~~~~~~~~~~----~~-~~~~~~~~~~~~~~l~~aGF~~v~~~d~~~-----~~~~~~~-~~---~~~-~~~~~~~~--~ 226 (263)
T PTZ00098 164 NWDEEFKAYI----KK-RKYTLIPIQEYGDLIKSCNFQNVVAKDISD-----YWLELLQ-VE---LKK-LEEKKEEF--L 226 (263)
T ss_pred CcHHHHHHHH----Hh-cCCCCCCHHHHHHHHHHCCCCeeeEEeCcH-----HHHHHHH-HH---HHH-HHHhHHHH--H
Confidence 1111111111 11 123456889999999999999999988742 2222211 11 111 11111111 1
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCccccccceeeEEEecC
Q 018194 316 PKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 353 (359)
Q Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~arKP 353 (359)
....++..+.+......+.+++..+... +-++.+|||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wg~~~~~~~ 263 (263)
T PTZ00098 227 KLYSEKEYNSLKDGWTRKIKDTKRKLQK-WGYFKAQKM 263 (263)
T ss_pred HhcCHHHHHHHHHHHHHHHHHhhccccc-cceEeecCC
Confidence 1223344455566666666666555333 234558885
No 10
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=4.5e-25 Score=200.02 Aligned_cols=309 Identities=43% Similarity=0.664 Sum_probs=253.1
Q ss_pred HHHHHHHHhhhcCCccccccchhhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEE
Q 018194 48 EDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRIL 127 (359)
Q Consensus 48 ~~~~~~y~~~~~~~~~~~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 127 (359)
.+....+++.....+......+.+.++++|+...++|.+.|+.++|+++............++.....-.....++.+++
T Consensus 36 ~~~~~~~~~~~~~~~~~e~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (364)
T KOG1269|consen 36 VDNYLTFIKKNAEINAEETEDLPEQIAKYYNNSTDLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKVL 115 (364)
T ss_pred hhhHhhhhhhhcccccccccccchHHHHHhcccchhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCccccccc
Confidence 33343444444333333366788899999999999999999999999998776666666555555555556778888999
Q ss_pred EECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHH
Q 018194 128 DVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLE 207 (359)
Q Consensus 128 DiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 207 (359)
|+|||.|.....++.+.++.++|+|.++..+.++........+..+..++.+|+.+.|++++.||.+.+..+.+|.++..
T Consensus 116 ~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~ 195 (364)
T KOG1269|consen 116 DVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLE 195 (364)
T ss_pred ccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHH
Confidence 99999999999999987899999999999999999999888888888889999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEE-EEecCCCCCC
Q 018194 208 DVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK-EKDLAKPPAQ 286 (359)
Q Consensus 208 ~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~-~~~~~~~~~~ 286 (359)
.++.+++|+++|||.++..+|.....+......+..+...+..+...+.......+-++++..||..+. .+++......
T Consensus 196 ~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~dl~~~~s~ 275 (364)
T KOG1269|consen 196 KVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEKDLALKSSF 275 (364)
T ss_pred HHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccchhhhhcccccCCCcc
Confidence 999999999999999999999998888777777777777777666666555566788999999999988 6666655556
Q ss_pred chhhhhh--------------ccchhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCccccccceeeE-EEe
Q 018194 287 PWWTRLK--------------MGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMV-LLR 351 (359)
Q Consensus 287 ~w~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v-~ar 351 (359)
+|+.+.. ....+.+.........+.++..|.+..++..++.+....+.++++.+.|+++.+. +.+
T Consensus 276 ~w~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~~p~gs~~~~~~~~~~~~~l~~~~e~~gF~~~~~~~~~~ 355 (364)
T KOG1269|consen 276 PWNTPLTRDTITHWQDKSALFRGRVATLKPGGKVLILEYIRGLPEGSSDFAKYIAQAAVGLKRGGETGGFTPVDIEDVTD 355 (364)
T ss_pred ccccccchhheeecccccHHHHhHhhccCcCceEEehhhcCcCCcCcchHHHHHHhhhhhceecccccCcccceeeEccc
Confidence 8888775 2223333333334566788889999999999999999999999888899999987 999
Q ss_pred cCCCC
Q 018194 352 KPHPP 356 (359)
Q Consensus 352 KP~~~ 356 (359)
||.+.
T Consensus 356 k~~~~ 360 (364)
T KOG1269|consen 356 KPEEV 360 (364)
T ss_pred cchhh
Confidence 99864
No 11
>PRK08317 hypothetical protein; Provisional
Probab=99.91 E-value=3e-22 Score=175.78 Aligned_cols=232 Identities=23% Similarity=0.260 Sum_probs=157.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF 186 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 186 (359)
...+.+...+.+.++.+|||+|||+|.++..+++. +.++++|+|+|+.+++.++++.. ....++++...|+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCC
Confidence 34455677788889999999999999999999885 35799999999999999988732 234579999999998888
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCc-ccccC-chHHHHHHhhhhcCCCCCCCCCHHHHH
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTD-KYEAE-NKEHVDIIQGIERGDALPGLRSYAEIT 264 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (359)
++++||+|++..+++|++++..+++++.++|||||.+++.+..... ..... ..........+.. ..........+.
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 161 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD--HFADPWLGRRLP 161 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence 8889999999999999999999999999999999999987643211 11111 1122222222221 112334567899
Q ss_pred HHHHhCCCeEEEEEecCCCCCCchhhhhhccchhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCccccccc
Q 018194 265 EIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTP 344 (359)
Q Consensus 265 ~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 344 (359)
++|+++||+++..+..... ...|..... ...+........+. .-...+++...+.++.+. ...+......+
T Consensus 162 ~~l~~aGf~~~~~~~~~~~-~~~~~~~~~----~~~l~~~~~~~~~~---~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ 232 (241)
T PRK08317 162 GLFREAGLTDIEVEPYTLI-ETDLKEADK----GFGLIRAARRAVEA---GGISADEADAWLADLAQL-ARAGEFFFSVT 232 (241)
T ss_pred HHHHHcCCCceeEEEEEEe-ccCcchhhH----HHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHH-HhcCCEEEEEE
Confidence 9999999998877665322 223322110 11111112222111 112334455555555544 34666777888
Q ss_pred eeeEEEecC
Q 018194 345 MHMVLLRKP 353 (359)
Q Consensus 345 ~~~v~arKP 353 (359)
.++++||||
T Consensus 233 ~~~~~~~kp 241 (241)
T PRK08317 233 GFLVVGRKP 241 (241)
T ss_pred EEEEEEeCC
Confidence 999999998
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.91 E-value=2.7e-23 Score=181.42 Aligned_cols=172 Identities=26% Similarity=0.373 Sum_probs=132.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP 185 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 185 (359)
..+.+.+++.+.+.++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.++++....++ ++++++++|+.+++
T Consensus 31 ~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 31 KKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP 109 (231)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC
Confidence 334466777888888999999999999999999875 457999999999999999999887765 57999999999988
Q ss_pred CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHH-------HHHhhhhc--------
Q 018194 186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHV-------DIIQGIER-------- 250 (359)
Q Consensus 186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-------- 250 (359)
+++++||+|++..+++|++++.++++++.++|+|||++++.+....... ....... ........
T Consensus 110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIP-GFKQLYFFYFKYIMPLFGKLFAKSYKEYSW 188 (231)
T ss_pred CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCCh-HHHHHHHHHHcChhHHhhHHhcCCHHHHHH
Confidence 8888999999999999999999999999999999999998775432210 0000000 00000000
Q ss_pred -CCCCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194 251 -GDALPGLRSYAEITEIAKRVGFEVVKEKDLA 281 (359)
Q Consensus 251 -~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~ 281 (359)
......+.+.+++.++|+++||++++.+.+.
T Consensus 189 ~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 189 LQESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 0012245688999999999999999887774
No 13
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.91 E-value=7.7e-23 Score=180.91 Aligned_cols=157 Identities=18% Similarity=0.145 Sum_probs=117.0
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 189 (359)
...++..+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|+++ +++++++|+.+++ +++
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~ 88 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PKP 88 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CCC
Confidence 345677777788899999999999999999885 568999999999999998753 4789999998764 567
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHH-----HhhhhcCC---CCCCCCCHH
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDI-----IQGIERGD---ALPGLRSYA 261 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~ 261 (359)
+||+|+++.+++|++++..++++++++|||||++++..+.... .......... +....... ....+.+..
T Consensus 89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 166 (255)
T PRK14103 89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFD--APSHAAVRALARREPWAKLLRDIPFRVGAVVQTPA 166 (255)
T ss_pred CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcC--ChhHHHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence 9999999999999999999999999999999999986432111 0010011110 01101110 112356889
Q ss_pred HHHHHHHhCCCeEEEEE
Q 018194 262 EITEIAKRVGFEVVKEK 278 (359)
Q Consensus 262 ~~~~~l~~aGF~~i~~~ 278 (359)
++.++|+++||++...+
T Consensus 167 ~~~~~l~~aGf~v~~~~ 183 (255)
T PRK14103 167 GYAELLTDAGCKVDAWE 183 (255)
T ss_pred HHHHHHHhCCCeEEEEe
Confidence 99999999999865443
No 14
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.91 E-value=4.8e-23 Score=185.47 Aligned_cols=163 Identities=22% Similarity=0.300 Sum_probs=126.5
Q ss_pred CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT 200 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 200 (359)
.++.+|||||||+|.++..+++ .+++|+|+|+|+.+++.|+++....+...+++++++|++++++++++||+|++..++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 3577999999999999999987 478999999999999999988765554457999999999988777899999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcc-cccCchHHHHHHhhhhcCC-CCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194 201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDK-YEAENKEHVDIIQGIERGD-ALPGLRSYAEITEIAKRVGFEVVKEK 278 (359)
Q Consensus 201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~i~~~ 278 (359)
+|++|+..+++++.++|||||.+++.++..... +.........+......+. ....+++++++.++|+++||++++..
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 999999999999999999999999976543211 0000000111111122222 23357899999999999999999987
Q ss_pred ecCCCC
Q 018194 279 DLAKPP 284 (359)
Q Consensus 279 ~~~~~~ 284 (359)
-+...|
T Consensus 289 G~~~~p 294 (322)
T PLN02396 289 GFVYNP 294 (322)
T ss_pred eeEEcC
Confidence 775544
No 15
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.90 E-value=2.8e-23 Score=173.75 Aligned_cols=192 Identities=21% Similarity=0.272 Sum_probs=139.1
Q ss_pred hhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCC---CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHH
Q 018194 86 WGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDV---KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR 162 (359)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~ 162 (359)
.+|+....|.+.+..+..+. .++...... -++.+|||+|||.|.++..+|+. |+.|+|+|+|+.+++.|+
T Consensus 26 ~wwd~~g~f~~LH~~N~~rl------~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak 98 (243)
T COG2227 26 RWWDPEGEFKPLHKINPLRL------DYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAK 98 (243)
T ss_pred hhcCCCCceeeeeeeccchh------hhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHH
Confidence 34555666665554444332 222222221 47899999999999999999996 799999999999999999
Q ss_pred HHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccC-chHH
Q 018194 163 LHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE-NKEH 241 (359)
Q Consensus 163 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~ 241 (359)
.++.+.++. +++.+..++++....++||+|+|..+++|++|+..+++++.+++||||.+++.....+..-... ....
T Consensus 99 ~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~a 176 (243)
T COG2227 99 LHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGA 176 (243)
T ss_pred Hhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHH
Confidence 999988764 7899999988766568999999999999999999999999999999999999765543110000 0011
Q ss_pred HHHHhhhhcCCC-CCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCC
Q 018194 242 VDIIQGIERGDA-LPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQ 286 (359)
Q Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~ 286 (359)
..+...+..+.. ...+..++++..++..+|+.+.+...+...+..
T Consensus 177 e~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~y~p~~ 222 (243)
T COG2227 177 EYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLTYNPLT 222 (243)
T ss_pred HHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecceEecccc
Confidence 112222222211 223667889999999999999998877665543
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.89 E-value=1.8e-21 Score=187.48 Aligned_cols=161 Identities=26% Similarity=0.415 Sum_probs=130.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF 191 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 191 (359)
+.+++.+.+.++.+|||||||+|..+..+++..+++|+|+|+|+.+++.|+++.. +...+++|.++|+...++++++|
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCE
Confidence 4455566677889999999999999999998778899999999999999988765 33457999999999888888899
Q ss_pred ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194 192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG 271 (359)
Q Consensus 192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 271 (359)
|+|++..+++|++++..++++++++|||||++++.++....... ......... . .+ ..+.+..++.++|+++|
T Consensus 334 D~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~---~-~g-~~~~~~~~~~~~l~~aG 406 (475)
T PLN02336 334 DVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTP--SPEFAEYIK---Q-RG-YDLHDVQAYGQMLKDAG 406 (475)
T ss_pred EEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCC--cHHHHHHHH---h-cC-CCCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999998876543211 112221111 1 11 24568899999999999
Q ss_pred CeEEEEEecC
Q 018194 272 FEVVKEKDLA 281 (359)
Q Consensus 272 F~~i~~~~~~ 281 (359)
|+++..++++
T Consensus 407 F~~i~~~d~~ 416 (475)
T PLN02336 407 FDDVIAEDRT 416 (475)
T ss_pred Ceeeeeecch
Confidence 9999887764
No 17
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.89 E-value=9.7e-21 Score=167.25 Aligned_cols=176 Identities=18% Similarity=0.266 Sum_probs=133.6
Q ss_pred hHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEE
Q 018194 71 DFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVG 150 (359)
Q Consensus 71 ~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g 150 (359)
+.|+..|+..+..|+. ....++...+.+++.+...++.+|||+|||+|.++..+++. +.+|++
T Consensus 7 ~~i~~~F~~aa~~Y~~----------------~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~ 69 (251)
T PRK10258 7 QAIAAAFGRAAAHYEQ----------------HAELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTA 69 (251)
T ss_pred HHHHHHHHHHHHhHhH----------------HHHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEE
Confidence 3456666666655553 12334555666777777667789999999999999988874 689999
Q ss_pred EeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194 151 ITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT 230 (359)
Q Consensus 151 ~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 230 (359)
+|+|+.|++.++++.. .+.++++|++++++++++||+|+++.++++.+++..++.++.++|||||.+++..+..
T Consensus 70 ~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 70 LDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred EECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 9999999999987642 3578999999999888899999999999999999999999999999999999976543
Q ss_pred CcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeE
Q 018194 231 TDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEV 274 (359)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 274 (359)
.. .......+...........+.+.+++.++|+..|++.
T Consensus 144 ~~-----~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 144 GS-----LPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred Cc-----hHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence 21 1222222222222223345778999999999999875
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.88 E-value=1.8e-21 Score=172.16 Aligned_cols=168 Identities=11% Similarity=0.121 Sum_probs=126.7
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCC
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDN 189 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~ 189 (359)
...+++.+. .++.+|||+|||+|.++..+++. +.+|+++|+|+.|++.|+++....++.++++++++|+.+++ ++++
T Consensus 34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 344555555 45679999999999999999986 67999999999999999999998888778999999998764 5668
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCccccc--CchHHHHHHhhhhc----CCCCCCCCCHHHH
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEA--ENKEHVDIIQGIER----GDALPGLRSYAEI 263 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 263 (359)
+||+|++..+++|++++..+++++.++|||||++++..+........ ...........+.. ........+++++
T Consensus 112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 191 (255)
T PRK11036 112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQV 191 (255)
T ss_pred CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999875543211000 00000001111110 0011234688999
Q ss_pred HHHHHhCCCeEEEEEec
Q 018194 264 TEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 264 ~~~l~~aGF~~i~~~~~ 280 (359)
.++|+++||+++....+
T Consensus 192 ~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 192 YQWLEEAGWQIMGKTGV 208 (255)
T ss_pred HHHHHHCCCeEeeeeeE
Confidence 99999999999876654
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.87 E-value=1.8e-20 Score=170.09 Aligned_cols=166 Identities=20% Similarity=0.210 Sum_probs=123.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF 191 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 191 (359)
+.+...+....+.+|||||||+|.++..++......|+|+|+|+.++..++......+...+++++.+|++++++ .++|
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~F 190 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAF 190 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCc
Confidence 445556665568899999999999999999864457999999999997665543333334579999999999987 7889
Q ss_pred ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194 192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG 271 (359)
Q Consensus 192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 271 (359)
|+|++..+++|..++..++++++++|+|||.+++.++.............. .+........+.+..++.++|+++|
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~----~y~~~~~~~~lps~~~l~~~L~~aG 266 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGD----RYAKMRNVYFIPSVPALKNWLERAG 266 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchh----HHhcCccceeCCCHHHHHHHHHHcC
Confidence 999999999999999999999999999999999866543321111000000 0111111112458899999999999
Q ss_pred CeEEEEEecCC
Q 018194 272 FEVVKEKDLAK 282 (359)
Q Consensus 272 F~~i~~~~~~~ 282 (359)
|++++..+.+.
T Consensus 267 F~~i~~~~~~~ 277 (322)
T PRK15068 267 FKDVRIVDVSV 277 (322)
T ss_pred CceEEEEeCCC
Confidence 99999887654
No 20
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.86 E-value=5.8e-20 Score=163.02 Aligned_cols=229 Identities=12% Similarity=0.147 Sum_probs=144.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF 186 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 186 (359)
......++..+.+.++.+|||||||+|.++..+++. ++++|+|+|+|+.|++.++++. .++.++.+|+.++.
T Consensus 17 ~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~- 89 (258)
T PRK01683 17 TRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQ- 89 (258)
T ss_pred hcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccC-
Confidence 334566777778888999999999999999999875 5689999999999999998763 35899999998764
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchH-HHH------HHhhhhcCC-CCCCCC
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKE-HVD------IIQGIERGD-ALPGLR 258 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~-~~~~~~ 258 (359)
+.++||+|+++.+++|++|...+++++.++|||||.+++.... ........ ... +...+.... ....+.
T Consensus 90 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~---~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 166 (258)
T PRK01683 90 PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD---NLDEPSHVLMREVAENGPWEQNLPDRGARRAPLP 166 (258)
T ss_pred CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC---CCCCHHHHHHHHHHccCchHHHhccccccCcCCC
Confidence 4569999999999999999999999999999999999885211 11111111 100 111111111 112345
Q ss_pred CHHHHHHHHHhCCCeEEEEEecCCCCCCchhhhhhccchhHHHHHH-HHHHHHHhccCCCCcHHHHHHHHHHHHHHH---
Q 018194 259 SYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHI-LVTILAALGIAPKGTVGVHDMLFKTADYLT--- 334 (359)
Q Consensus 259 ~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 334 (359)
+...+.++|.++|+.+.........++.. . ..+.+|+... +..... .+.+...+++.+.+.+......
T Consensus 167 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~--~l~~~~~~~f~~~~~~~~~~~~~~~ 238 (258)
T PRK01683 167 PPHAYYDALAPAACRVDIWHTTYYHPMPS-A-----QAIVEWVKGTGLRPFLD--PLTESEQAAFLAAYLARIAEAYPLQ 238 (258)
T ss_pred CHHHHHHHHHhCCCceeeeeeeeeeecCC-c-----hhhhhhhhhccHHHHHh--hCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 77889999999998754333221111111 1 1111222211 122221 2223334455555544444432
Q ss_pred hcCccccccceeeEEEecCC
Q 018194 335 RGGETGIFTPMHMVLLRKPH 354 (359)
Q Consensus 335 ~~~~~~~~~~~~~v~arKP~ 354 (359)
.+|...+.++..+++|+|++
T Consensus 239 ~~g~~~~~~~~~~~~~~~~~ 258 (258)
T PRK01683 239 ADGKVLLAFPRLFIVARRKE 258 (258)
T ss_pred CCCcEEcccceEEEEEEecC
Confidence 23434455556679999863
No 21
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.86 E-value=3e-20 Score=161.36 Aligned_cols=148 Identities=24% Similarity=0.357 Sum_probs=121.7
Q ss_pred CEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc
Q 018194 124 DRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH 202 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 202 (359)
.+|||||||+|.++..+++. ++++|+|+|+|+.+++.+++++...++.+++++...|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 37999999999999999885 46899999999999999999999888888999999999776654 58999999999999
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 018194 203 APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAK 282 (359)
Q Consensus 203 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~ 282 (359)
++++..+++++.++|||||++++.++.... ..... .......+.+..++.++++++||++++..+++.
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~-----------~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~ 147 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANL-LSAIE-----------HEETTSYLVTREEWAELLARNNLRVVEGVDASL 147 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEccccc-Ccccc-----------ccccccccCCHHHHHHHHHHCCCeEEEeEECcH
Confidence 999999999999999999999998764321 11000 000111255788999999999999999988865
Q ss_pred CC
Q 018194 283 PP 284 (359)
Q Consensus 283 ~~ 284 (359)
..
T Consensus 148 ~~ 149 (224)
T smart00828 148 EI 149 (224)
T ss_pred hH
Confidence 43
No 22
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.86 E-value=7.1e-20 Score=164.25 Aligned_cols=165 Identities=18% Similarity=0.176 Sum_probs=121.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF 191 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 191 (359)
..++..+...++.+|||||||+|.++..++......|+|+|+|+.|+..++......+...++.+...++.+++.. ++|
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~F 189 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAF 189 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCc
Confidence 4566666667789999999999999988887533489999999999987544333222234688999999888754 589
Q ss_pred ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccC-chHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194 192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE-NKEHVDIIQGIERGDALPGLRSYAEITEIAKRV 270 (359)
Q Consensus 192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 270 (359)
|+|++..+++|++++..+|++++++|||||.+++.+.......... .+.. . ...+ .....+.+..++.++|+++
T Consensus 190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~-r-y~k~---~nv~flpS~~~L~~~L~~a 264 (314)
T TIGR00452 190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKD-R-YAKM---KNVYFIPSVSALKNWLEKV 264 (314)
T ss_pred CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchH-H-HHhc---cccccCCCHHHHHHHHHHC
Confidence 9999999999999999999999999999999998765432211110 0000 0 0001 1111345789999999999
Q ss_pred CCeEEEEEecCC
Q 018194 271 GFEVVKEKDLAK 282 (359)
Q Consensus 271 GF~~i~~~~~~~ 282 (359)
||+.++..+...
T Consensus 265 GF~~V~i~~~~~ 276 (314)
T TIGR00452 265 GFENFRILDVLK 276 (314)
T ss_pred CCeEEEEEeccC
Confidence 999999887644
No 23
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.85 E-value=1e-20 Score=159.21 Aligned_cols=159 Identities=23% Similarity=0.194 Sum_probs=120.2
Q ss_pred CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEcCCCCCCCCCCccceEEec
Q 018194 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS-----LCEVVCGNFLKMPFEDNHFDGAYSI 197 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~fD~v~~~ 197 (359)
|++|||+|||+|.++..||+. |++|+|+|+++.|++.|+++........ ++++.+.|.+.. .+.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 589999999999999999995 7999999999999999999944332222 366777777765 3569999999
Q ss_pred ccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhc-CCC-CCCCCCHHHHHHHHHhCCCeEE
Q 018194 198 EATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIER-GDA-LPGLRSYAEITEIAKRVGFEVV 275 (359)
Q Consensus 198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~aGF~~i 275 (359)
.+++|+.|+..+++.+.++|||||.+++.+...+-.-.............+.. |.. ...+.++.++..++..+|+++.
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~ 245 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVN 245 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchh
Confidence 99999999999999999999999999997755532211111222222222332 222 3347799999999999999998
Q ss_pred EEEecCCCCC
Q 018194 276 KEKDLAKPPA 285 (359)
Q Consensus 276 ~~~~~~~~~~ 285 (359)
........+.
T Consensus 246 ~v~G~~y~p~ 255 (282)
T KOG1270|consen 246 DVVGEVYNPI 255 (282)
T ss_pred hhhccccccc
Confidence 8776655554
No 24
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.85 E-value=2.6e-20 Score=168.20 Aligned_cols=155 Identities=23% Similarity=0.243 Sum_probs=120.4
Q ss_pred HHHHHhcCC-CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194 112 EMAVDLIDV-KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189 (359)
Q Consensus 112 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 189 (359)
+.+++.+.+ .++.+|||||||+|.++..+++. ++.+|+++|+|+.|++.++++... .+++++.+|+.+++++++
T Consensus 102 ~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~ 177 (340)
T PLN02490 102 DDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTD 177 (340)
T ss_pred HHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCC
Confidence 334444443 46789999999999999888875 457999999999999999987542 368899999999988889
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR 269 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (359)
+||+|++..+++|++++..+++++.++|||||++++.+...... ....... .....+.+.+++.++|++
T Consensus 178 sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~------~~~r~~~-----~~~~~~~t~eEl~~lL~~ 246 (340)
T PLN02490 178 YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTF------WLSRFFA-----DVWMLFPKEEEYIEWFTK 246 (340)
T ss_pred ceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcch------hHHHHhh-----hhhccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999998865332210 0000000 001123478999999999
Q ss_pred CCCeEEEEEecC
Q 018194 270 VGFEVVKEKDLA 281 (359)
Q Consensus 270 aGF~~i~~~~~~ 281 (359)
+||+.++.+++.
T Consensus 247 aGF~~V~i~~i~ 258 (340)
T PLN02490 247 AGFKDVKLKRIG 258 (340)
T ss_pred CCCeEEEEEEcC
Confidence 999999988763
No 25
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.85 E-value=9.2e-20 Score=159.92 Aligned_cols=169 Identities=26% Similarity=0.452 Sum_probs=129.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE 187 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 187 (359)
+...++..+...++.+|||+|||+|.++..++... ..+++++|+++.+++.++++....++..++.+..+|+.+.+++
T Consensus 39 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 39 WRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 33445556666678899999999999999998864 4899999999999999999987766666899999999988777
Q ss_pred CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHH--------hhhhcCC-------
Q 018194 188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDII--------QGIERGD------- 252 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~------- 252 (359)
.++||+|++..++++.+++..+++++.++|+|||.+++.++....... ......+. .......
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPP--LKKAYDFYLFKVLPLIGKLISKNAEAYSYL 196 (239)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchH--HHHHHHHHHHhhhHHHHHHHcCCcHHHHHH
Confidence 789999999999999999999999999999999999998765432211 00000000 0000000
Q ss_pred --CCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194 253 --ALPGLRSYAEITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 253 --~~~~~~~~~~~~~~l~~aGF~~i~~~~~ 280 (359)
....+.+.+++.++|+++||++++...+
T Consensus 197 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 226 (239)
T PRK00216 197 AESIRAFPDQEELAAMLEEAGFERVRYRNL 226 (239)
T ss_pred HHHHHhCCCHHHHHHHHHhCCCceeeeeee
Confidence 0023457789999999999999988775
No 26
>PRK05785 hypothetical protein; Provisional
Probab=99.85 E-value=2.9e-20 Score=160.66 Aligned_cols=147 Identities=20% Similarity=0.203 Sum_probs=107.3
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC 201 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 201 (359)
++.+|||||||||..+..+++..+.+|+|+|+|+.|++.|+++ ..++++|++++|+++++||+|++.++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhh
Confidence 4679999999999999999886457999999999999998764 2467899999999999999999999999
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchH-------HHHHHhhhhcCCC---------CCCCCCHHHHHH
Q 018194 202 HAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKE-------HVDIIQGIERGDA---------LPGLRSYAEITE 265 (359)
Q Consensus 202 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~~~ 265 (359)
|++|+..++++++|+|||. +.+.++..++... .... .......+..+.. ...+.+.+++.+
T Consensus 122 ~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~-~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~ 198 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVI-KRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHRE 198 (226)
T ss_pred ccCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHH-HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999994 3334444332110 0000 1111111111111 113668899999
Q ss_pred HHHhCCCeEEEEEecC
Q 018194 266 IAKRVGFEVVKEKDLA 281 (359)
Q Consensus 266 ~l~~aGF~~i~~~~~~ 281 (359)
+|+++| ..++.+.++
T Consensus 199 ~~~~~~-~~~~~~~~~ 213 (226)
T PRK05785 199 IFEKYA-DIKVYEERG 213 (226)
T ss_pred HHHHHh-CceEEEEcc
Confidence 999974 667666653
No 27
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.84 E-value=8.4e-20 Score=160.45 Aligned_cols=153 Identities=16% Similarity=0.264 Sum_probs=115.6
Q ss_pred CCCCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEe
Q 018194 120 VKAGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYS 196 (359)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~ 196 (359)
+.++.+|||||||+|..+..+++ .++++|+|+|+|+.|++.|+++....+...+++++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 34678999999999999988876 367899999999999999999998887777899999999987754 5899999
Q ss_pred cccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCC---------------CCCCCC
Q 018194 197 IEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDA---------------LPGLRS 259 (359)
Q Consensus 197 ~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 259 (359)
+.+++|+++ ...++++++++|||||.+++.+......... .......+.......+ .....+
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKV-GELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchh-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 999999863 5689999999999999999988544221111 1111111111111111 112357
Q ss_pred HHHHHHHHHhCCCeEE
Q 018194 260 YAEITEIAKRVGFEVV 275 (359)
Q Consensus 260 ~~~~~~~l~~aGF~~i 275 (359)
.++..++|+++||+.+
T Consensus 211 ~~~~~~~L~~aGF~~v 226 (247)
T PRK15451 211 VETHKARLHKAGFEHS 226 (247)
T ss_pred HHHHHHHHHHcCchhH
Confidence 8999999999999864
No 28
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.84 E-value=1.3e-19 Score=162.06 Aligned_cols=157 Identities=25% Similarity=0.359 Sum_probs=124.3
Q ss_pred cCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194 118 IDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY 195 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~ 195 (359)
..+.++.+|||+|||+|..+..+++.. ..+|+++|+|+.|++.|+++....++. ++++..+|+.++++++++||+|+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEE
Confidence 456789999999999999888777643 358999999999999999998887764 79999999999888888999999
Q ss_pred ecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEE
Q 018194 196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVV 275 (359)
Q Consensus 196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i 275 (359)
++.+++|.++...+++++.++|||||++++.++....... ........ + .........+..++.++|+++||..+
T Consensus 152 ~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~---~~~~~~~~-~-~~~~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 152 SNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELP---EEIRNDAE-L-YAGCVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred EcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCC---HHHHHhHH-H-HhccccCCCCHHHHHHHHHHCCCCce
Confidence 9999999999999999999999999999998876543221 11111111 1 11112234578899999999999998
Q ss_pred EEEec
Q 018194 276 KEKDL 280 (359)
Q Consensus 276 ~~~~~ 280 (359)
+....
T Consensus 227 ~i~~~ 231 (272)
T PRK11873 227 TIQPK 231 (272)
T ss_pred EEEec
Confidence 76543
No 29
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.84 E-value=1e-20 Score=155.51 Aligned_cols=149 Identities=26% Similarity=0.367 Sum_probs=110.9
Q ss_pred HHHHHhcC-CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194 112 EMAVDLID-VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH 190 (359)
Q Consensus 112 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 190 (359)
+.+....+ ..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++. .++.....+....+.++++
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 78 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGS 78 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSS
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccc
Confidence 34444443 567889999999999999999775 5699999999999987 1345555555454567789
Q ss_pred cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194 191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV 270 (359)
Q Consensus 191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 270 (359)
||+|+++.+++|++|+..+|+++.++|||||++++.++..... .......+...........+++.+++.++++++
T Consensus 79 fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 154 (161)
T PF13489_consen 79 FDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDP----SPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQA 154 (161)
T ss_dssp EEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSH----HHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHT
T ss_pred hhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcch----hhhHHHhcCCcCccCceeccCCHHHHHHHHHHC
Confidence 9999999999999999999999999999999999987654320 001111111111111233677999999999999
Q ss_pred CCeEEE
Q 018194 271 GFEVVK 276 (359)
Q Consensus 271 GF~~i~ 276 (359)
||++++
T Consensus 155 G~~iv~ 160 (161)
T PF13489_consen 155 GFEIVE 160 (161)
T ss_dssp TEEEEE
T ss_pred CCEEEE
Confidence 999986
No 30
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.84 E-value=2.4e-19 Score=155.55 Aligned_cols=192 Identities=27% Similarity=0.423 Sum_probs=138.8
Q ss_pred chhhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcC--
Q 018194 68 KVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR-- 145 (359)
Q Consensus 68 ~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-- 145 (359)
.+++.++.+||..+..+.... ...+...++..+...++.+|||+|||+|.++..+++...
T Consensus 3 ~~~~~~~~~y~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~ 64 (223)
T TIGR01934 3 EMFDRIAPKYDLLNDLLSFGL------------------HRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDR 64 (223)
T ss_pred hHHHHHHhhhhHHHHHHhccc------------------HHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCC
Confidence 356667777777665543211 123345556666666889999999999999999988543
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194 146 ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 146 ~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
.+++++|+++.+++.++++.. ...++++..+|+.+.+++.++||+|++..++++.+++..+++++.+.|+|||++++
T Consensus 65 ~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 65 GKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred ceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 599999999999999988765 34578999999999887778999999999999999999999999999999999999
Q ss_pred EEeeeCcccccCchHHHHHHhhhh-------cCCC---------CCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194 226 YEWVTTDKYEAENKEHVDIIQGIE-------RGDA---------LPGLRSYAEITEIAKRVGFEVVKEKDLA 281 (359)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---------~~~~~~~~~~~~~l~~aGF~~i~~~~~~ 281 (359)
.++..... .............+. .... ...+.+.+++.++|+++||+++..+.+.
T Consensus 142 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 212 (223)
T TIGR01934 142 LEFSKPAN-ALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLT 212 (223)
T ss_pred EEecCCCc-hhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeee
Confidence 87654321 111000000000000 0000 0234578899999999999999887663
No 31
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.84 E-value=2.1e-20 Score=152.17 Aligned_cols=107 Identities=32% Similarity=0.557 Sum_probs=97.3
Q ss_pred CCCCEEEEECCCCChHHHHHHh--hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEe
Q 018194 121 KAGDRILDVGCGVGGPMRAIAA--HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDGAYS 196 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~ 196 (359)
+.+.+|||+|||+|.++..+++ .++.+++|+|+|+.|++.|+++++..+++ +++|.++|+.+++ ++ +.||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEE
Confidence 3578999999999999999994 35789999999999999999999998887 8999999999976 55 79999999
Q ss_pred cccccccCCHHHHHHHHHhccCCCCEEEEEEee
Q 018194 197 IEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV 229 (359)
Q Consensus 197 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 229 (359)
..+++|++++..+++++.++|+|||.+++.+..
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999999999999999999999999998766
No 32
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.83 E-value=6.7e-19 Score=154.48 Aligned_cols=143 Identities=25% Similarity=0.354 Sum_probs=113.4
Q ss_pred CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194 122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT 200 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 200 (359)
.+.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.. +++.++.+|+.+.++++++||+|++..++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l 108 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL 108 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence 4579999999999999999885 45689999999999999887653 36899999999988888999999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194 201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~ 280 (359)
+|.+++..++.++.++|+|||.+++.++.... .......... ....+.+..++.++++++ |..+.....
T Consensus 109 ~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 177 (240)
T TIGR02072 109 QWCDDLSQALSELARVLKPGGLLAFSTFGPGT-----LHELRQSFGQ-----HGLRYLSLDELKALLKNS-FELLTLEEE 177 (240)
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEeCCccC-----HHHHHHHHHH-----hccCCCCHHHHHHHHHHh-cCCcEEEEE
Confidence 99999999999999999999999987543321 1111111111 122456788999999998 987765443
No 33
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.83 E-value=4e-19 Score=145.00 Aligned_cols=218 Identities=13% Similarity=0.156 Sum_probs=150.8
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 189 (359)
...++..+++.+..+|.|+|||+|..+..|+++ +++.++|+|.|+.|++.|+++. ++++|..+|+.++. +..
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~-p~~ 91 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK-PEQ 91 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcC-CCC
Confidence 345677788888899999999999999999985 8899999999999999998773 47899999999875 457
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHH-HHHHh-----hhhcCC--CCCCCCCHH
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEH-VDIIQ-----GIERGD--ALPGLRSYA 261 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~--~~~~~~~~~ 261 (359)
..|+++++.+++++||...+|..+...|.|||.+.+. ++++........ ..... ....+. ....+.++.
T Consensus 92 ~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ---mPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a 168 (257)
T COG4106 92 PTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ---MPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPA 168 (257)
T ss_pred ccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE---CCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHH
Confidence 8999999999999999999999999999999999984 344444333221 11111 111111 123466889
Q ss_pred HHHHHHHhCCCeEEEEEecCCCC------CCchhhhhhccchhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHh
Q 018194 262 EITEIAKRVGFEVVKEKDLAKPP------AQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTR 335 (359)
Q Consensus 262 ~~~~~l~~aGF~~i~~~~~~~~~------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 335 (359)
.+-++|...+-++--.++...++ +..|-....+.++ +.+-+.++-..++......+.+
T Consensus 169 ~Yy~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~----------------L~~L~e~~~~~FL~~Y~~~l~~ 232 (257)
T COG4106 169 AYYELLAPLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPY----------------LDRLDEEERQRFLDRYLALLAE 232 (257)
T ss_pred HHHHHhCcccceeeeeeeeccccCCCccchhhheecccccee----------------ccccCHHHHHHHHHHHHHHHHH
Confidence 99999998887776555544443 2344433322222 1122223333344433333332
Q ss_pred ------cCccccccceeeEEEecCC
Q 018194 336 ------GGETGIFTPMHMVLLRKPH 354 (359)
Q Consensus 336 ------~~~~~~~~~~~~v~arKP~ 354 (359)
+|+.-+-+|..|+||+|++
T Consensus 233 aYP~~~dGr~ll~FpRlFiVA~~~~ 257 (257)
T COG4106 233 AYPPRADGRVLLAFPRLFIVATRGE 257 (257)
T ss_pred hCCCccCCcEEeecceEEEEEecCC
Confidence 3555566678899999864
No 34
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.83 E-value=1.2e-19 Score=159.08 Aligned_cols=153 Identities=17% Similarity=0.261 Sum_probs=116.2
Q ss_pred CCCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEec
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSI 197 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~ 197 (359)
.++.+|||+|||+|..+..+++. ++++++|+|+|+.|++.|+++....+...+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 46789999999999999998874 57899999999999999999988766556799999999988764 58999999
Q ss_pred ccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCC---------------CCCCCCCH
Q 018194 198 EATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGD---------------ALPGLRSY 260 (359)
Q Consensus 198 ~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 260 (359)
.+++|++ ++..++++++++|||||.+++.+........ ...........+.... ......+.
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK-INHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHh-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 9999986 4678999999999999999998765432111 1111111111111100 12235688
Q ss_pred HHHHHHHHhCCCeEEE
Q 018194 261 AEITEIAKRVGFEVVK 276 (359)
Q Consensus 261 ~~~~~~l~~aGF~~i~ 276 (359)
+++.++|+++||..++
T Consensus 209 ~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 209 ETHKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHHHcCCchHH
Confidence 9999999999998644
No 35
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.83 E-value=4.9e-19 Score=150.11 Aligned_cols=148 Identities=20% Similarity=0.271 Sum_probs=117.3
Q ss_pred HHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccc
Q 018194 113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD 192 (359)
Q Consensus 113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 192 (359)
.+++.+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++.....++. ++++...|+.+.+++ ++||
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD 97 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFD-GEYD 97 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcC-CCcC
Confidence 3455555667789999999999999999986 679999999999999999998887764 689999999887764 6799
Q ss_pred eEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194 193 GAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV 270 (359)
Q Consensus 193 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 270 (359)
+|++..+++|++ +...+++++.++|||||++++.+......... ..+.+...+.+++.+.++
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~--------------~~~~~~~~~~~el~~~~~-- 161 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC--------------TVGFPFAFKEGELRRYYE-- 161 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC--------------CCCCCCccCHHHHHHHhC--
Confidence 999999998876 57899999999999999977655433321110 112334567889999887
Q ss_pred CCeEEEEEe
Q 018194 271 GFEVVKEKD 279 (359)
Q Consensus 271 GF~~i~~~~ 279 (359)
||+++....
T Consensus 162 ~~~~~~~~~ 170 (197)
T PRK11207 162 GWEMVKYNE 170 (197)
T ss_pred CCeEEEeeC
Confidence 999887643
No 36
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.82 E-value=8.7e-19 Score=159.15 Aligned_cols=164 Identities=14% Similarity=0.213 Sum_probs=124.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 189 (359)
.+.+.+.+...++.+|||||||+|.++..+++. ++.+++++|. +.+++.+++++...++.++++++.+|+.+.+++.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~- 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE- 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC-
Confidence 355666777788899999999999999999884 6789999997 7999999999999988889999999998766543
Q ss_pred ccceEEecccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194 190 HFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA 267 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (359)
+|+|++..++|++++ ...+++++++.|+|||++++.|+...+...+......................+.+++.++|
T Consensus 216 -~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll 294 (306)
T TIGR02716 216 -ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEIL 294 (306)
T ss_pred -CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHH
Confidence 699999999998864 35899999999999999999997654332221111111111111111122345579999999
Q ss_pred HhCCCeEEEE
Q 018194 268 KRVGFEVVKE 277 (359)
Q Consensus 268 ~~aGF~~i~~ 277 (359)
+++||+.++.
T Consensus 295 ~~aGf~~v~~ 304 (306)
T TIGR02716 295 ESLGYKDVTM 304 (306)
T ss_pred HHcCCCeeEe
Confidence 9999998864
No 37
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.82 E-value=1e-18 Score=157.07 Aligned_cols=149 Identities=21% Similarity=0.291 Sum_probs=103.0
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCCCCCCccceEEec
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL----DSLCEVVCGNFLKMPFEDNHFDGAYSI 197 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~ 197 (359)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++....+. ..++.|...|+.++ +++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 5789999999999999999985 67999999999999999998876421 23578889998654 4789999999
Q ss_pred ccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCC---CCCCCCHHHHHHHHHhCCC
Q 018194 198 EATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDA---LPGLRSYAEITEIAKRVGF 272 (359)
Q Consensus 198 ~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~aGF 272 (359)
.+++|+++ ...+++.+.+ +.+||.++. +.... ..............+.. ...+++.+++.++|+++||
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liIs--~~p~~----~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf 292 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLIIS--FAPKT----LYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGW 292 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEEE--eCCcc----hHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCC
Confidence 99999875 3356676665 456555442 11110 00011111111121111 1124578999999999999
Q ss_pred eEEEEEecC
Q 018194 273 EVVKEKDLA 281 (359)
Q Consensus 273 ~~i~~~~~~ 281 (359)
+++..+...
T Consensus 293 ~v~~~~~~~ 301 (315)
T PLN02585 293 KVARREMTA 301 (315)
T ss_pred EEEEEEEee
Confidence 998766543
No 38
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.82 E-value=6.1e-20 Score=136.93 Aligned_cols=95 Identities=37% Similarity=0.545 Sum_probs=84.8
Q ss_pred EEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCH
Q 018194 127 LDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKL 206 (359)
Q Consensus 127 LDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 206 (359)
||+|||+|..+..+++.++.+|+++|+|+.+++.++++.... ++.+..+|+.++|+++++||+|++..+++|++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeeccCH
Confidence 899999999999999986789999999999999999987643 4679999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCEEEE
Q 018194 207 EDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 207 ~~~l~~~~~~LkpgG~l~~ 225 (359)
..+++++.|+|||||++++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999985
No 39
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.82 E-value=8.6e-19 Score=141.95 Aligned_cols=158 Identities=19% Similarity=0.253 Sum_probs=122.0
Q ss_pred hcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EEEcCCCCCC-CCCCccceE
Q 018194 117 LIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCE-VVCGNFLKMP-FEDNHFDGA 194 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~fD~v 194 (359)
++.......|||||||||..-..+--.++++|+++|+++.|-+.+.+.+++.. +.++. |+.++.+++| ++++++|.|
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccccCCeeeE
Confidence 44434445789999999998877765678999999999999999999988773 45676 9999999998 889999999
Q ss_pred EecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcC--C-CCCCCCCHHHHHHHHHhCC
Q 018194 195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERG--D-ALPGLRSYAEITEIAKRVG 271 (359)
Q Consensus 195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~aG 271 (359)
++..+||.+.|+.+.|+++.|+|||||++++.|+.... ...+..+++..... . ......-..+.-+.|+++-
T Consensus 150 V~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~-----y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~ 224 (252)
T KOG4300|consen 150 VCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE-----YGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAE 224 (252)
T ss_pred EEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccccc-----chHHHHHHHHHhchhhheeccceEEehhHHHHhhhcc
Confidence 99999999999999999999999999999999876642 12233333333222 0 0111222356778899999
Q ss_pred CeEEEEEec
Q 018194 272 FEVVKEKDL 280 (359)
Q Consensus 272 F~~i~~~~~ 280 (359)
|+.+..+..
T Consensus 225 f~~~~~kr~ 233 (252)
T KOG4300|consen 225 FSIDSCKRF 233 (252)
T ss_pred cccchhhcc
Confidence 999887665
No 40
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.81 E-value=3.6e-19 Score=137.17 Aligned_cols=105 Identities=30% Similarity=0.409 Sum_probs=90.7
Q ss_pred CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCCCCCCccceEEecc-
Q 018194 122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF-LKMPFEDNHFDGAYSIE- 198 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~fD~v~~~~- 198 (359)
|+.+|||||||+|.++..+++ .++++|+|+|+|+.+++.++++....+..++++++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 578999999999999999999 578999999999999999999997777888999999999 44333 35699999999
Q ss_pred ccccc---CCHHHHHHHHHhccCCCCEEEEEE
Q 018194 199 ATCHA---PKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 199 ~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.++++ ++...+++++++.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44433 457899999999999999999853
No 41
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.80 E-value=3.7e-18 Score=144.49 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=114.8
Q ss_pred HHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccce
Q 018194 114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG 193 (359)
Q Consensus 114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 193 (359)
+.+.+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.++++....++. +.+...|+...+++ ++||+
T Consensus 22 l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD~ 97 (195)
T TIGR00477 22 VREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYDF 97 (195)
T ss_pred HHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCCE
Confidence 445555556789999999999999999985 679999999999999999988877764 77888888766654 67999
Q ss_pred EEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194 194 AYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG 271 (359)
Q Consensus 194 v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 271 (359)
|++..+++|++ +...+++++.++|||||++++.++........ +...+...+..++.++++ +
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~--------------~~~~~~~~~~~el~~~f~--~ 161 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC--------------HMPFSFTFKEDELRQYYA--D 161 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC--------------CCCcCccCCHHHHHHHhC--C
Confidence 99999999885 56799999999999999987776544322111 111234568899999986 5
Q ss_pred CeEEEEEec
Q 018194 272 FEVVKEKDL 280 (359)
Q Consensus 272 F~~i~~~~~ 280 (359)
|+++.....
T Consensus 162 ~~~~~~~e~ 170 (195)
T TIGR00477 162 WELLKYNEA 170 (195)
T ss_pred CeEEEeecc
Confidence 999887643
No 42
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.78 E-value=2.5e-17 Score=143.93 Aligned_cols=168 Identities=21% Similarity=0.243 Sum_probs=123.4
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCC
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDN 189 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~ 189 (359)
.+.+...+...++.+|||||||+|.++..+++. +++++++|+++.+++.++++....+. ++++...|+.+.+ ...+
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 113 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPG 113 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCC
Confidence 455556665667899999999999999988885 67999999999999999998876554 4788888887754 3457
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhh-c-CCCCCCCCCHHHHHHHH
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIE-R-GDALPGLRSYAEITEIA 267 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l 267 (359)
+||+|++..+++|.+++..+++++.++|+|||.+++..+..................... . ......+.+..++.++|
T Consensus 114 ~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (233)
T PRK05134 114 QFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWL 193 (233)
T ss_pred CccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHH
Confidence 899999999999999999999999999999999998654321100000000000111111 1 11123466889999999
Q ss_pred HhCCCeEEEEEecC
Q 018194 268 KRVGFEVVKEKDLA 281 (359)
Q Consensus 268 ~~aGF~~i~~~~~~ 281 (359)
+++||++++...+.
T Consensus 194 ~~~Gf~~v~~~~~~ 207 (233)
T PRK05134 194 RQAGLEVQDITGLH 207 (233)
T ss_pred HHCCCeEeeeeeEE
Confidence 99999999886654
No 43
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.78 E-value=2e-17 Score=143.01 Aligned_cols=165 Identities=19% Similarity=0.266 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHhcC--CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 018194 106 ATRLHEEMAVDLID--VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK 183 (359)
Q Consensus 106 ~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 183 (359)
..+.+.+.+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+...++.+.++|+.+
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 34445566666665 567889999999999999999885 579999999999999999998877665689999999987
Q ss_pred CCCCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCC---CCCCC
Q 018194 184 MPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDA---LPGLR 258 (359)
Q Consensus 184 ~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 258 (359)
++ ++||+|++..+++|++ +...+++++.+++++++.+.+. ... ...... ........+.. ...+.
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~---~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~ 185 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA---PKT---AWLAFL-KMIGELFPGSSRATSAYLH 185 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC---CCc---hHHHHH-HHHHhhCcCcccccceEEe
Confidence 64 7899999999998885 4678999999999877665542 110 011111 11111111111 11345
Q ss_pred CHHHHHHHHHhCCCeEEEEEecC
Q 018194 259 SYAEITEIAKRVGFEVVKEKDLA 281 (359)
Q Consensus 259 ~~~~~~~~l~~aGF~~i~~~~~~ 281 (359)
+.+++.++++++||+++..+...
T Consensus 186 ~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 186 PMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred cHHHHHHHHHHcCceeeeeeccc
Confidence 88999999999999999887664
No 44
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.77 E-value=6.9e-17 Score=134.75 Aligned_cols=129 Identities=26% Similarity=0.330 Sum_probs=107.3
Q ss_pred CCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194 120 VKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE 198 (359)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~ 198 (359)
++++.+|||+|||+|..+..++. .++++|+++|+|+.|++.++++.+..+++ +++++++|+.+++. .++||+|+++.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-CCCccEEEEcc
Confidence 34588999999999999999986 46789999999999999999999998875 49999999998776 67999999975
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194 199 ATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK 278 (359)
Q Consensus 199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~ 278 (359)
+.++..+++.+.++|||||++++.... .....+.++.+..|+.+....
T Consensus 121 ----~~~~~~~l~~~~~~LkpGG~lv~~~~~----------------------------~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 121 ----VASLSDLVELCLPLLKPGGRFLALKGR----------------------------DPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ----ccCHHHHHHHHHHhcCCCeEEEEEeCC----------------------------ChHHHHHHHHHhcCceEeeeE
Confidence 457889999999999999999985311 123467777788899988776
Q ss_pred ecCC
Q 018194 279 DLAK 282 (359)
Q Consensus 279 ~~~~ 282 (359)
.++.
T Consensus 169 ~~~~ 172 (187)
T PRK00107 169 ELTL 172 (187)
T ss_pred EEec
Confidence 6643
No 45
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.76 E-value=2.7e-17 Score=147.71 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=110.6
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC 201 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 201 (359)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++....++ ++++...|+...++ +++||+|++..+++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl~ 195 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVLM 195 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchhh
Confidence 4459999999999999999985 68999999999999999999888776 58899999877655 57899999999999
Q ss_pred ccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEe
Q 018194 202 HAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKD 279 (359)
Q Consensus 202 ~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~ 279 (359)
|++ +...+++++.++|+|||++++..+.....+.. ....+...+..++.+.++. |+++....
T Consensus 196 ~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~--------------~~p~~~~~~~~el~~~~~~--~~i~~~~e 259 (287)
T PRK12335 196 FLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPC--------------PMPFSFTFKEGELKDYYQD--WEIVKYNE 259 (287)
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCC--------------CCCCCcccCHHHHHHHhCC--CEEEEEec
Confidence 886 57899999999999999987765443322110 1112345678999999964 99888743
No 46
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.76 E-value=2.2e-17 Score=143.41 Aligned_cols=167 Identities=19% Similarity=0.177 Sum_probs=119.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF 191 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 191 (359)
+.+...+..-.|.+|||||||.|..+..++......|+|+|+++...-..+....-.+....+.+...-++++|. .+.|
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~F 183 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAF 183 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCc
Confidence 446666644578999999999999999999875568999999998776654433333333344555467777776 6899
Q ss_pred ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194 192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG 271 (359)
Q Consensus 192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 271 (359)
|+|+|..+|+|..++...|++++..|+|||.+++-.......... .+. -...+.......-+.|...+..+|+++|
T Consensus 184 DtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~---~L~-P~~rYa~m~nv~FiPs~~~L~~wl~r~g 259 (315)
T PF08003_consen 184 DTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENT---VLV-PEDRYAKMRNVWFIPSVAALKNWLERAG 259 (315)
T ss_pred CEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCce---EEc-cCCcccCCCceEEeCCHHHHHHHHHHcC
Confidence 999999999999999999999999999999999855443221110 000 0001111111112458899999999999
Q ss_pred CeEEEEEecCCC
Q 018194 272 FEVVKEKDLAKP 283 (359)
Q Consensus 272 F~~i~~~~~~~~ 283 (359)
|+.+++-+...+
T Consensus 260 F~~v~~v~~~~T 271 (315)
T PF08003_consen 260 FKDVRCVDVSPT 271 (315)
T ss_pred CceEEEecCccC
Confidence 999998887544
No 47
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.73 E-value=1.6e-16 Score=137.95 Aligned_cols=156 Identities=27% Similarity=0.347 Sum_probs=118.1
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEecccc
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE-DNHFDGAYSIEAT 200 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l 200 (359)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+.. ++++...|+.+.+.. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4789999999999999988874 568999999999999999988766542 588999998876543 3789999999999
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHH------HHhhhhc-CCCCCCCCCHHHHHHHHHhCCCe
Q 018194 201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVD------IIQGIER-GDALPGLRSYAEITEIAKRVGFE 273 (359)
Q Consensus 201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~l~~aGF~ 273 (359)
+|+.++..+++++.++|+|||.+++..+.... ...... ....... ......+.+..++.++++++||+
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~ 197 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTP-----KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLR 197 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc-----hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCe
Confidence 99999999999999999999999886543211 011111 0000101 11122456788999999999999
Q ss_pred EEEEEecCCCC
Q 018194 274 VVKEKDLAKPP 284 (359)
Q Consensus 274 ~i~~~~~~~~~ 284 (359)
+++...+...+
T Consensus 198 i~~~~~~~~~~ 208 (224)
T TIGR01983 198 VKDVKGLVYNP 208 (224)
T ss_pred eeeeeeEEeeh
Confidence 99987665444
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.73 E-value=3.3e-16 Score=130.48 Aligned_cols=99 Identities=23% Similarity=0.371 Sum_probs=85.2
Q ss_pred CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194 122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT 200 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 200 (359)
++.+|||+|||+|.++..++.. ++++|+++|+|+.|++.++++.++.++. +++++++|+.+++ ..++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~~~~fD~I~s~~-- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-HEEQFDVITSRA-- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-ccCCccEEEehh--
Confidence 4789999999999999998864 4579999999999999999998888774 6999999998864 357899999876
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 201 CHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 201 ~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+.+...+++.+.++|+|||.+++.
T Consensus 118 --~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 --LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred --hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 346677889999999999999974
No 49
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.73 E-value=4.3e-16 Score=135.82 Aligned_cols=151 Identities=23% Similarity=0.289 Sum_probs=108.6
Q ss_pred CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA 199 (359)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 199 (359)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+...++.+..+|+.. .+++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcch
Confidence 456789999999999999999885 568999999999999999998887765679999999533 3578999999999
Q ss_pred ccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcC---CCCCCCCCHHHHHHHHHhCCCeE
Q 018194 200 TCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERG---DALPGLRSYAEITEIAKRVGFEV 274 (359)
Q Consensus 200 l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~aGF~~ 274 (359)
++|++ +...+++++.+.+++++.+.+. ... ... ............ .......+..++.++++++||++
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i~~~---~~~---~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIFTFA---PYT---PLL-ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEEEEC---Ccc---HHH-HHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 98876 4568888988877544443321 110 000 111111111111 11123457889999999999999
Q ss_pred EEEEecC
Q 018194 275 VKEKDLA 281 (359)
Q Consensus 275 i~~~~~~ 281 (359)
++...+.
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 9987764
No 50
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.72 E-value=1.4e-16 Score=131.89 Aligned_cols=145 Identities=18% Similarity=0.302 Sum_probs=106.9
Q ss_pred HHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccce
Q 018194 114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG 193 (359)
Q Consensus 114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 193 (359)
+.+.++..++.++||+|||.|+.+..||+. |..|+++|+|+..++.+++.++..+++ |+....|+.+..++ +.||+
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCE
Confidence 444555556779999999999999999996 789999999999999999988888775 99999999887765 68999
Q ss_pred EEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194 194 AYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG 271 (359)
Q Consensus 194 v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 271 (359)
|++..+++|++ ....+++++...++|||++++..+...+.++... ..+..+.+.++.+.+. |
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~--------------~~~f~~~~~EL~~~y~--d 161 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPS--------------PFPFLLKPGELREYYA--D 161 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS----------------S--B-TTHHHHHTT--T
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCC--------------CCCcccCHHHHHHHhC--C
Confidence 99988888885 4678999999999999999887665443332211 1123345568888776 6
Q ss_pred CeEEEEE
Q 018194 272 FEVVKEK 278 (359)
Q Consensus 272 F~~i~~~ 278 (359)
|+++...
T Consensus 162 W~il~y~ 168 (192)
T PF03848_consen 162 WEILKYN 168 (192)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 9998753
No 51
>PRK06202 hypothetical protein; Provisional
Probab=99.71 E-value=1.3e-16 Score=139.18 Aligned_cols=155 Identities=17% Similarity=0.173 Sum_probs=107.9
Q ss_pred CCCCCCEEEEECCCCChHHHHHHhh-----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccce
Q 018194 119 DVKAGDRILDVGCGVGGPMRAIAAH-----SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG 193 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 193 (359)
...++.+|||+|||+|.++..|++. ++.+|+|+|+|+.|++.|+++... .++++...+...++.++++||+
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~~~~~~l~~~~~~fD~ 132 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PGVTFRQAVSDELVAEGERFDV 132 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CCCeEEEEecccccccCCCccE
Confidence 3456789999999999999888752 346999999999999999887543 2467777777777666789999
Q ss_pred EEecccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcc-cccCchHHHHHH-hhhhcCCC---CCCCCCHHHHHHH
Q 018194 194 AYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDK-YEAENKEHVDII-QGIERGDA---LPGLRSYAEITEI 266 (359)
Q Consensus 194 v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~ 266 (359)
|+++.+++|+++. ..+++++.++++ |.+++.++..+.. +........... ..+..... ....++.+++.++
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~l 210 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAAL 210 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHH
Confidence 9999999999874 579999999998 5666655444311 000000000000 01111111 2246789999999
Q ss_pred HHhCCCeEEEEEec
Q 018194 267 AKRVGFEVVKEKDL 280 (359)
Q Consensus 267 l~~aGF~~i~~~~~ 280 (359)
+++ ||++.....+
T Consensus 211 l~~-Gf~~~~~~~~ 223 (232)
T PRK06202 211 APQ-GWRVERQWPF 223 (232)
T ss_pred hhC-CCeEEeccce
Confidence 999 9998776544
No 52
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.71 E-value=8.6e-16 Score=129.44 Aligned_cols=139 Identities=14% Similarity=0.180 Sum_probs=110.1
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE 187 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 187 (359)
..+..++..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.++++....++. +++++.+|+.. ++
T Consensus 18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~- 94 (187)
T PRK08287 18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-EL- 94 (187)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hc-
Confidence 33445666777788999999999999999999874 5679999999999999999998887764 69999999853 33
Q ss_pred CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194 188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA 267 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (359)
.++||+|++..... ....+++.+.+.|+|||++++..... .+..++.+++
T Consensus 95 ~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~---------------------------~~~~~~~~~l 144 (187)
T PRK08287 95 PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILL---------------------------ENLHSALAHL 144 (187)
T ss_pred CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecH---------------------------hhHHHHHHHH
Confidence 36899999876543 45678999999999999998743211 1235778899
Q ss_pred HhCCCeEEEEEec
Q 018194 268 KRVGFEVVKEKDL 280 (359)
Q Consensus 268 ~~aGF~~i~~~~~ 280 (359)
++.||+.++...+
T Consensus 145 ~~~g~~~~~~~~~ 157 (187)
T PRK08287 145 EKCGVSELDCVQL 157 (187)
T ss_pred HHCCCCcceEEEE
Confidence 9999988876655
No 53
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.70 E-value=1.4e-16 Score=130.44 Aligned_cols=131 Identities=18% Similarity=0.237 Sum_probs=97.7
Q ss_pred EEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 149 VGITINEYQVNRARLHNKKA--GLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 149 ~g~D~s~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+|+|+|+.|++.|+++.... +...+++++++|+.++|+++++||+|++.+++++++|+..++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998776532 2234799999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCcccccCchHHHHHH--------hhhhcC-CC-------CCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194 227 EWVTTDKYEAENKEHVDII--------QGIERG-DA-------LPGLRSYAEITEIAKRVGFEVVKEKDLA 281 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~-------~~~~~~~~~~~~~l~~aGF~~i~~~~~~ 281 (359)
|+...+..... ....+. ..+... .. ...+.+++++.++|+++||+.+....+.
T Consensus 81 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 81 DFNKSNQSVTT--FMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred ECCCCChHHHH--HHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 88754321000 000000 000000 00 1235688999999999999999876653
No 54
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.69 E-value=5.7e-16 Score=132.18 Aligned_cols=112 Identities=25% Similarity=0.277 Sum_probs=95.2
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF 186 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 186 (359)
.+...+++.+.+.++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++...++..+++++.+|+.+...
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 345667778888889999999999999999988753 469999999999999999999888877779999999987544
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..++||+|++..++++++ +++.+.|+|||++++.
T Consensus 139 ~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIP 172 (205)
T ss_pred cCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEE
Confidence 457999999999887765 4688999999999873
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.69 E-value=5.1e-17 Score=122.65 Aligned_cols=94 Identities=30% Similarity=0.511 Sum_probs=80.2
Q ss_pred EEEECCCCChHHHHHHhhc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc-cc
Q 018194 126 ILDVGCGVGGPMRAIAAHS----RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE-AT 200 (359)
Q Consensus 126 vLDiGcG~G~~~~~l~~~~----~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~-~l 200 (359)
|||+|||+|..+..+++.. ..+++|+|+|+.|++.++++....+. +++++++|+.++++.+++||+|++.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999853 37999999999999999999887654 69999999999888788999999954 48
Q ss_pred cccC--CHHHHHHHHHhccCCCC
Q 018194 201 CHAP--KLEDVYAEVFRVLKPGS 221 (359)
Q Consensus 201 ~~~~--~~~~~l~~~~~~LkpgG 221 (359)
+|++ +...+++++.++|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 9986 47899999999999998
No 56
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.69 E-value=4.1e-16 Score=150.32 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=116.1
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCC
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK--MPFED 188 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~ 188 (359)
...+++.+...++.+|||||||+|.++..+++. ..+|+|+|+|+.|++.+++.. +..++++++++|+.. +++++
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCC
Confidence 455667777667889999999999999999986 469999999999998876533 223579999999963 56778
Q ss_pred CccceEEecccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194 189 NHFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEI 266 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (359)
++||+|++..+++|+++ ...+++++.++|||||++++.|.+....... ........+.....+.++
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 169 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS------------KRKNNPTHYREPRFYTKV 169 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc------------cccCCCCeecChHHHHHH
Confidence 89999999999999986 5799999999999999999987543211000 001122234567799999
Q ss_pred HHhCCCeEEE
Q 018194 267 AKRVGFEVVK 276 (359)
Q Consensus 267 l~~aGF~~i~ 276 (359)
+.++||....
T Consensus 170 f~~~~~~~~~ 179 (475)
T PLN02336 170 FKECHTRDED 179 (475)
T ss_pred HHHheeccCC
Confidence 9999998764
No 57
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.69 E-value=1.9e-15 Score=126.41 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=106.5
Q ss_pred HhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194 116 DLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY 195 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~ 195 (359)
..+...++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.++++....+. +++++.+|+.+.. .++||+|+
T Consensus 13 ~~l~~~~~~~vLdlG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi 87 (179)
T TIGR00537 13 ANLRELKPDDVLEIGAGTGLVAIRLKGKG-KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVIL 87 (179)
T ss_pred HHHHhcCCCeEEEeCCChhHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEE
Confidence 33444556799999999999999999864 4999999999999999999887664 5889999987643 45899999
Q ss_pred ecccccccCC---------------------HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCC
Q 018194 196 SIEATCHAPK---------------------LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDAL 254 (359)
Q Consensus 196 ~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (359)
++..+++.++ ...+++++.++|||||.+++......
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------------- 144 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------------- 144 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------
Confidence 9987765542 35689999999999999998642211
Q ss_pred CCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194 255 PGLRSYAEITEIAKRVGFEVVKEKDLA 281 (359)
Q Consensus 255 ~~~~~~~~~~~~l~~aGF~~i~~~~~~ 281 (359)
...++.+.|++.||+........
T Consensus 145 ----~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 145 ----GEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred ----ChHHHHHHHHhCCCeEEEEEEee
Confidence 23578899999999998877653
No 58
>PRK06922 hypothetical protein; Provisional
Probab=99.69 E-value=1.9e-16 Score=151.62 Aligned_cols=112 Identities=22% Similarity=0.386 Sum_probs=94.4
Q ss_pred hcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccce
Q 018194 117 LIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDG 193 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~ 193 (359)
..+..++.+|||+|||+|..+..+++ .++.+|+|+|+|+.|++.|+++....+ .++.++++|+.+++ +++++||+
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEE
Confidence 34445688999999999999988887 467899999999999999998865543 35888999998877 77889999
Q ss_pred EEeccccccc-------------CCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194 194 AYSIEATCHA-------------PKLEDVYAEVFRVLKPGSLYVSYEWVT 230 (359)
Q Consensus 194 v~~~~~l~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 230 (359)
|+++.++|++ .+...++++++++|||||++++.+...
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 9999988865 246799999999999999999987543
No 59
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.69 E-value=3.3e-15 Score=127.54 Aligned_cols=153 Identities=19% Similarity=0.222 Sum_probs=110.3
Q ss_pred CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCeEEEEcCCCCCCCC-
Q 018194 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA-----------GLDSLCEVVCGNFLKMPFE- 187 (359)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-----------~~~~~i~~~~~d~~~~~~~- 187 (359)
..++.+|||+|||.|..+..||++ |.+|+|+|+|+.+++.+.+..... .-..++++.++|+.+++..
T Consensus 32 ~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 32 LPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 346779999999999999999986 789999999999999864322100 0123689999999987632
Q ss_pred CCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHH
Q 018194 188 DNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITE 265 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (359)
.+.||.|+-..+++|++ .....++.+.++|||||++++..+...+.. ..+.+...+.+++.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~----------------~~gpp~~~~~~eL~~ 174 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE----------------MAGPPFSVSPAEVEA 174 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC----------------CCCcCCCCCHHHHHH
Confidence 36799999999999986 467899999999999998777655432110 012334578899999
Q ss_pred HHHhCCCeEEEEEecCCCCCCchhh
Q 018194 266 IAKRVGFEVVKEKDLAKPPAQPWWT 290 (359)
Q Consensus 266 ~l~~aGF~~i~~~~~~~~~~~~w~~ 290 (359)
++.. +|++...+....+...+|..
T Consensus 175 ~f~~-~~~i~~~~~~~~~~~~~~~~ 198 (213)
T TIGR03840 175 LYGG-HYEIELLESRDVLEDNPRFG 198 (213)
T ss_pred HhcC-CceEEEEeeccccccCchhh
Confidence 8864 57766665544332235543
No 60
>PRK04266 fibrillarin; Provisional
Probab=99.68 E-value=1.6e-15 Score=130.51 Aligned_cols=139 Identities=15% Similarity=0.153 Sum_probs=100.4
Q ss_pred hcCCCCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCcc
Q 018194 117 LIDVKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM----PFEDNHF 191 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~f 191 (359)
.+++.++.+|||+|||+|.++..+++.. ..+|+++|+++.|++.+.+++... .|+.++.+|+.+. +++ ++|
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~-~~~ 142 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV-EKV 142 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc-ccC
Confidence 5788899999999999999999999864 359999999999999887776543 4789999998752 122 569
Q ss_pred ceEEecccccccCC-HHHHHHHHHhccCCCCEEEEE-EeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194 192 DGAYSIEATCHAPK-LEDVYAEVFRVLKPGSLYVSY-EWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR 269 (359)
Q Consensus 192 D~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (359)
|+|++... .++ ...+++++.++|||||++++. .+.. .+..... ....++..++|++
T Consensus 143 D~i~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~---~d~~~~~----------------~~~~~~~~~~l~~ 200 (226)
T PRK04266 143 DVIYQDVA---QPNQAEIAIDNAEFFLKDGGYLLLAIKARS---IDVTKDP----------------KEIFKEEIRKLEE 200 (226)
T ss_pred CEEEECCC---ChhHHHHHHHHHHHhcCCCcEEEEEEeccc---ccCcCCH----------------HHHHHHHHHHHHH
Confidence 99986432 122 235689999999999999983 2211 0000000 0011345699999
Q ss_pred CCCeEEEEEecC
Q 018194 270 VGFEVVKEKDLA 281 (359)
Q Consensus 270 aGF~~i~~~~~~ 281 (359)
+||+.++..++.
T Consensus 201 aGF~~i~~~~l~ 212 (226)
T PRK04266 201 GGFEILEVVDLE 212 (226)
T ss_pred cCCeEEEEEcCC
Confidence 999999988873
No 61
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.68 E-value=1.2e-15 Score=129.19 Aligned_cols=146 Identities=16% Similarity=0.265 Sum_probs=104.1
Q ss_pred CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-CCCCCccceEEecc
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M-PFEDNHFDGAYSIE 198 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~v~~~~ 198 (359)
+++.+|||+|||+|.++..+++..+..++|+|+|+.+++.++++ +++++++|+.+ + ++++++||+|+++.
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 36789999999999999999876667899999999999888642 36888999876 3 36678999999999
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhc----------CCCCCCCCCHHHHHHHHH
Q 018194 199 ATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIER----------GDALPGLRSYAEITEIAK 268 (359)
Q Consensus 199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~ 268 (359)
+++|++|+..+++++.+.+++ +++.- +.+.........+...... ......+.+.+++.++++
T Consensus 84 ~l~~~~d~~~~l~e~~r~~~~---~ii~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~ 156 (194)
T TIGR02081 84 TLQATRNPEEILDEMLRVGRH---AIVSF----PNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCG 156 (194)
T ss_pred HhHcCcCHHHHHHHHHHhCCe---EEEEc----CChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHH
Confidence 999999999999999887664 33321 0110000000000000000 001124678999999999
Q ss_pred hCCCeEEEEEecC
Q 018194 269 RVGFEVVKEKDLA 281 (359)
Q Consensus 269 ~aGF~~i~~~~~~ 281 (359)
++||++++...+.
T Consensus 157 ~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 157 ELNLRILDRAAFD 169 (194)
T ss_pred HCCCEEEEEEEec
Confidence 9999999987664
No 62
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.68 E-value=3.5e-16 Score=128.93 Aligned_cols=206 Identities=18% Similarity=0.249 Sum_probs=145.0
Q ss_pred HHHHHHHHHHhhhcCCc----------------cccccchhhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHH
Q 018194 46 EVEDNYKEYWKFFKRPK----------------ETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRL 109 (359)
Q Consensus 46 ~~~~~~~~y~~~~~~~~----------------~~~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (359)
+.....+.|.+..+.+. +...+.....|+..||..++-|+..+-.+..|+- ..
T Consensus 44 ~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~e~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~v-----------P~ 112 (287)
T COG4976 44 EFDAAAAAYEEVLELDPEDHGGAALKLAVLGRGETPEKPPSAYVETLFDQYAERFDHILVDKLGYSV-----------PE 112 (287)
T ss_pred cHHHHHHHHHHHHcCCcccccchhhhHHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCcc-----------HH
Confidence 44566777777766544 2334455578999999999999887766666552 23
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CC
Q 018194 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-FE 187 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~ 187 (359)
....++..+...+-.++||+|||||.....|-... .+++|+|+|.+|++.|.++- +-+ ...+.|+... + ..
T Consensus 113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg----~YD--~L~~Aea~~Fl~~~~ 185 (287)
T COG4976 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKG----LYD--TLYVAEAVLFLEDLT 185 (287)
T ss_pred HHHHHHHhccCCccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhcc----chH--HHHHHHHHHHhhhcc
Confidence 34445555666667899999999999998887653 58999999999999987752 211 2334444321 1 34
Q ss_pred CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194 188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA 267 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (359)
++.||+|++..++.++.+.+.++--+...|+|||.+.++.-....... +.-+.....-++...+.+++
T Consensus 186 ~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~------------f~l~ps~RyAH~~~YVr~~l 253 (287)
T COG4976 186 QERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG------------FVLGPSQRYAHSESYVRALL 253 (287)
T ss_pred CCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC------------eecchhhhhccchHHHHHHH
Confidence 678999999999999999999999999999999999985322221110 00011111234567889999
Q ss_pred HhCCCeEEEEEecC
Q 018194 268 KRVGFEVVKEKDLA 281 (359)
Q Consensus 268 ~~aGF~~i~~~~~~ 281 (359)
+..||+++++++++
T Consensus 254 ~~~Gl~~i~~~~tt 267 (287)
T COG4976 254 AASGLEVIAIEDTT 267 (287)
T ss_pred HhcCceEEEeeccc
Confidence 99999999998874
No 63
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.68 E-value=1.4e-15 Score=124.02 Aligned_cols=148 Identities=21% Similarity=0.385 Sum_probs=111.7
Q ss_pred HHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-CCCCCcc
Q 018194 114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M-PFEDNHF 191 (359)
Q Consensus 114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~f 191 (359)
|.++ +.||.+|||+|||.|.+...|.+..+++.+|+|++++.+..+.++ | +.++++|+.+ + .|++++|
T Consensus 7 I~~~--I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d~sF 76 (193)
T PF07021_consen 7 IAEW--IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPDQSF 76 (193)
T ss_pred HHHH--cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCCCCc
Confidence 4444 357899999999999999999987789999999999998887654 2 6799999987 3 3899999
Q ss_pred ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhh-cCCC-----CC---------C
Q 018194 192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIE-RGDA-----LP---------G 256 (359)
Q Consensus 192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~---------~ 256 (359)
|.|+++.+++++.++..+|+++.|+ |...++.- +++ .+......+. .|.. +| +
T Consensus 77 D~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsF----PNF-----g~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih 144 (193)
T PF07021_consen 77 DYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSF----PNF-----GHWRNRLQLLLRGRMPVTKALPYEWYDTPNIH 144 (193)
T ss_pred cEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEe----cCh-----HHHHHHHHHHhcCCCCCCCCCCCcccCCCCcc
Confidence 9999999999999999999999877 44555421 111 1222111111 1111 11 3
Q ss_pred CCCHHHHHHHHHhCCCeEEEEEecCCC
Q 018194 257 LRSYAEITEIAKRVGFEVVKEKDLAKP 283 (359)
Q Consensus 257 ~~~~~~~~~~l~~aGF~~i~~~~~~~~ 283 (359)
+.|..+++++.++.|+++++...+...
T Consensus 145 ~~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 145 LCTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred cccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 668999999999999999998777543
No 64
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.68 E-value=1.3e-17 Score=125.54 Aligned_cols=96 Identities=29% Similarity=0.462 Sum_probs=65.3
Q ss_pred EEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEeccccccc
Q 018194 127 LDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDGAYSIEATCHA 203 (359)
Q Consensus 127 LDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~ 203 (359)
||||||+|.++..+.+. +..+++|+|+|+.|++.++++....+.. +......+..+.. ...++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999885 5689999999999999999888876532 3344444443322 122599999999999999
Q ss_pred CCHHHHHHHHHhccCCCCEE
Q 018194 204 PKLEDVYAEVFRVLKPGSLY 223 (359)
Q Consensus 204 ~~~~~~l~~~~~~LkpgG~l 223 (359)
+++..++++++++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
No 65
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.67 E-value=7.4e-16 Score=131.09 Aligned_cols=104 Identities=24% Similarity=0.302 Sum_probs=88.1
Q ss_pred CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCC--CCCCccceEEec
Q 018194 122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF-LKMP--FEDNHFDGAYSI 197 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~fD~v~~~ 197 (359)
++.+|||+|||+|..+..+++. ++.+|+|+|+|+.+++.++++....++ .++.++++|+ ..++ +++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5789999999999999999875 567999999999999999999888776 5799999999 6655 667899999987
Q ss_pred ccccccC--------CHHHHHHHHHhccCCCCEEEEE
Q 018194 198 EATCHAP--------KLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 198 ~~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+...+.. ....+++++.++|||||.+++.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 6543322 2478999999999999999984
No 66
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.67 E-value=4.7e-15 Score=125.98 Aligned_cols=133 Identities=20% Similarity=0.355 Sum_probs=105.9
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCC
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFED 188 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~ 188 (359)
...+..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.+++++...++.+++.++.+|+.+. +...
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~ 109 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTIN 109 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcC
Confidence 44456778889999999999999999998874 34699999999999999999998888667899999999763 2224
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK 268 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (359)
+.||+|++.. ...++..+++.+.++|||||++++. +.. +.+..++.+.|+
T Consensus 110 ~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~-~~~--------------------------~~~~~~~~~~l~ 159 (198)
T PRK00377 110 EKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVID-AIL--------------------------LETVNNALSALE 159 (198)
T ss_pred CCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEE-eec--------------------------HHHHHHHHHHHH
Confidence 6899999854 2357789999999999999999862 211 012357888899
Q ss_pred hCCCeE
Q 018194 269 RVGFEV 274 (359)
Q Consensus 269 ~aGF~~ 274 (359)
+.||..
T Consensus 160 ~~g~~~ 165 (198)
T PRK00377 160 NIGFNL 165 (198)
T ss_pred HcCCCe
Confidence 999943
No 67
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.67 E-value=1.9e-15 Score=123.51 Aligned_cols=145 Identities=15% Similarity=0.181 Sum_probs=104.4
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF 191 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 191 (359)
..+...++...-.++||+|||.|.++..|+.+. .+++++|+|+..++.|+++.... ++|++.+.|+.+. .|+++|
T Consensus 33 ~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~-~P~~~F 107 (201)
T PF05401_consen 33 ATLLAALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF-WPEGRF 107 (201)
T ss_dssp HHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-E
T ss_pred HHHHHhcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC-CCCCCe
Confidence 334445666666899999999999999999975 49999999999999999998753 4799999999774 467999
Q ss_pred ceEEecccccccCC---HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194 192 DGAYSIEATCHAPK---LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK 268 (359)
Q Consensus 192 D~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (359)
|+|++..+++++.+ ...++..+...|+|||.+++..+... .... +.+....+.+.++|.
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~------------~c~~------wgh~~ga~tv~~~~~ 169 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA------------NCRR------WGHAAGAETVLEMLQ 169 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH------------HHHH------TT-S--HHHHHHHHH
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC------------cccc------cCcccchHHHHHHHH
Confidence 99999999999964 56789999999999999999654211 1111 113346788999998
Q ss_pred hCCCeEEEEEec
Q 018194 269 RVGFEVVKEKDL 280 (359)
Q Consensus 269 ~aGF~~i~~~~~ 280 (359)
+. |..|+....
T Consensus 170 ~~-~~~~~~~~~ 180 (201)
T PF05401_consen 170 EH-LTEVERVEC 180 (201)
T ss_dssp HH-SEEEEEEEE
T ss_pred HH-hhheeEEEE
Confidence 87 666665444
No 68
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.67 E-value=1.8e-15 Score=128.48 Aligned_cols=103 Identities=24% Similarity=0.436 Sum_probs=87.5
Q ss_pred CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194 120 VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE 198 (359)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~ 198 (359)
+.++.+|||+|||+|..+..+++. ++.+++|+|+|+.|++.|+++. +++.+.++|+.+ ++++++||+|++..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 446779999999999999999885 5789999999999999998763 246888999988 78889999999999
Q ss_pred cccccC--CHHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194 199 ATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTT 231 (359)
Q Consensus 199 ~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 231 (359)
+++|++ +...+++++.+++ ++.+++.++..+
T Consensus 114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 999985 4678999999987 568888776543
No 69
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.66 E-value=1.2e-14 Score=124.48 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=112.4
Q ss_pred CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCeEEEEcCCCCCCCC
Q 018194 119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA-----------GLDSLCEVVCGNFLKMPFE 187 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-----------~~~~~i~~~~~d~~~~~~~ 187 (359)
...++.+|||+|||.|..+..||++ |.+|+|+|+|+..++.+.+..... -...+|++.++|+.+++..
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 3456779999999999999999986 789999999999999864321100 0124689999999987532
Q ss_pred -CCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHH
Q 018194 188 -DNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEIT 264 (359)
Q Consensus 188 -~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (359)
...||.|+-..+++|++ .....++.+.++|+|||.+++......+.- ..+.|...+.+++.
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~----------------~~gPp~~~~~~el~ 176 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE----------------LAGPPFSVSDEEVE 176 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc----------------CCCCCCCCCHHHHH
Confidence 25899999999999987 467999999999999997665443322110 01234567889999
Q ss_pred HHHHhCCCeEEEEEecCCCCCCchhhhh
Q 018194 265 EIAKRVGFEVVKEKDLAKPPAQPWWTRL 292 (359)
Q Consensus 265 ~~l~~aGF~~i~~~~~~~~~~~~w~~~~ 292 (359)
+++.. +|++...+....+...+|+...
T Consensus 177 ~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 203 (218)
T PRK13255 177 ALYAG-CFEIELLERQDVLEDNPKFVKK 203 (218)
T ss_pred HHhcC-CceEEEeeeccccccCchhhhc
Confidence 99953 3887777665444444555433
No 70
>PRK14967 putative methyltransferase; Provisional
Probab=99.66 E-value=1.7e-14 Score=124.98 Aligned_cols=134 Identities=22% Similarity=0.257 Sum_probs=101.0
Q ss_pred HhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194 116 DLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY 195 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~ 195 (359)
..+.+.++.+|||+|||+|.++..+++....+|+++|+|+.+++.++++....+. +++++.+|+.+. +++++||+|+
T Consensus 30 ~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi 106 (223)
T PRK14967 30 AAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVV 106 (223)
T ss_pred HhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEE
Confidence 3345677889999999999999999885334999999999999999998887665 488999998763 4567899999
Q ss_pred ecccccccC---------------------CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCC
Q 018194 196 SIEATCHAP---------------------KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDAL 254 (359)
Q Consensus 196 ~~~~l~~~~---------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (359)
++-...... ....+++++.++|||||+++++....
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~------------------------ 162 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL------------------------ 162 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc------------------------
Confidence 974322111 14567889999999999998742111
Q ss_pred CCCCCHHHHHHHHHhCCCeEEEEEe
Q 018194 255 PGLRSYAEITEIAKRVGFEVVKEKD 279 (359)
Q Consensus 255 ~~~~~~~~~~~~l~~aGF~~i~~~~ 279 (359)
....++.+.+++.||.......
T Consensus 163 ---~~~~~~~~~l~~~g~~~~~~~~ 184 (223)
T PRK14967 163 ---SGVERTLTRLSEAGLDAEVVAS 184 (223)
T ss_pred ---cCHHHHHHHHHHCCCCeEEEEe
Confidence 1234677888999998655544
No 71
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.66 E-value=3e-15 Score=117.32 Aligned_cols=112 Identities=18% Similarity=0.268 Sum_probs=92.2
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCC
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MPFED 188 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~ 188 (359)
...+...+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.++++....+.. +++++.+|+.. .+...
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhc
Confidence 444666677777889999999999999999985 5579999999999999999988877664 68999998765 23334
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
++||.|++..... ...++++++.+.|||||++++.
T Consensus 87 ~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 87 PEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEE
Confidence 6899999976543 3568999999999999999874
No 72
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.65 E-value=5.3e-15 Score=130.20 Aligned_cols=150 Identities=23% Similarity=0.278 Sum_probs=105.2
Q ss_pred hhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHH
Q 018194 86 WGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHN 165 (359)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~ 165 (359)
..+++.+.|+...+ .......+.+... ..++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++.
T Consensus 90 i~i~p~~afgtg~h-----~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~ 162 (250)
T PRK00517 90 IELDPGMAFGTGTH-----PTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA 162 (250)
T ss_pred EEECCCCccCCCCC-----HHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH
Confidence 44556666665432 1222233333332 3468899999999999998877753346999999999999999999
Q ss_pred HHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHH
Q 018194 166 KKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDII 245 (359)
Q Consensus 166 ~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 245 (359)
...++..++.+..+| .+||+|+++.... ....++.++.++|||||++++......
T Consensus 163 ~~~~~~~~~~~~~~~--------~~fD~Vvani~~~---~~~~l~~~~~~~LkpgG~lilsgi~~~-------------- 217 (250)
T PRK00517 163 ELNGVELNVYLPQGD--------LKADVIVANILAN---PLLELAPDLARLLKPGGRLILSGILEE-------------- 217 (250)
T ss_pred HHcCCCceEEEccCC--------CCcCEEEEcCcHH---HHHHHHHHHHHhcCCCcEEEEEECcHh--------------
Confidence 887764444443322 2799999875422 356788999999999999998532211
Q ss_pred hhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194 246 QGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~ 280 (359)
..+++.+.+++.||+++.....
T Consensus 218 -------------~~~~v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 218 -------------QADEVLEAYEEAGFTLDEVLER 239 (250)
T ss_pred -------------hHHHHHHHHHHCCCEEEEEEEe
Confidence 2357889999999999876554
No 73
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.64 E-value=4.3e-15 Score=127.33 Aligned_cols=112 Identities=25% Similarity=0.298 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP 185 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 185 (359)
......+++.+.+.++.+|||||||+|..+..+++.. +.+|+++|+++.+++.++++....+. .+++++++|+....
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~ 140 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGY 140 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCC
Confidence 4556677888888999999999999999999988753 36999999999999999999988876 47999999998755
Q ss_pred CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.+.++||+|++..+..+++ ..+.+.|||||++++.
T Consensus 141 ~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 141 EENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEE
Confidence 5668999999987765443 4567789999999884
No 74
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.64 E-value=6.1e-15 Score=130.38 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=86.5
Q ss_pred CCCCCCEEEEECCCCCh----HHHHHHhh-c-----CCEEEEEeCCHHHHHHHHHHHHH----cC---------------
Q 018194 119 DVKAGDRILDVGCGVGG----PMRAIAAH-S-----RANVVGITINEYQVNRARLHNKK----AG--------------- 169 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~G~----~~~~l~~~-~-----~~~v~g~D~s~~~~~~a~~~~~~----~~--------------- 169 (359)
...++.+|+|+|||+|. ++..+++. + +.+|+|+|+|+.|++.|++..-. .+
T Consensus 96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~ 175 (264)
T smart00138 96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED 175 (264)
T ss_pred CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC
Confidence 34456899999999997 44445442 1 46999999999999999875310 01
Q ss_pred -------CCCCeEEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEE
Q 018194 170 -------LDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 170 -------~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+..+|+|.++|+.+.+++.++||+|+|.++++|++ +..+++++++++|+|||++++.
T Consensus 176 ~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 176 KYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred eEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 22478999999999877788999999999999996 4568999999999999999984
No 75
>PRK14968 putative methyltransferase; Provisional
Probab=99.63 E-value=1.6e-14 Score=121.87 Aligned_cols=136 Identities=28% Similarity=0.395 Sum_probs=104.8
Q ss_pred HHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCCCCCCCCccce
Q 018194 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSL-CEVVCGNFLKMPFEDNHFDG 193 (359)
Q Consensus 115 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~fD~ 193 (359)
...+...++.+|||+|||+|.++..++.. +.+++++|+|+.+++.++++....++..+ +.++++|+.+ ++.+++||+
T Consensus 16 ~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~ 93 (188)
T PRK14968 16 AENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDV 93 (188)
T ss_pred HHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceE
Confidence 33444467889999999999999999987 78999999999999999999887776433 8899999876 345568999
Q ss_pred EEeccccccc---------------------CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCC
Q 018194 194 AYSIEATCHA---------------------PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGD 252 (359)
Q Consensus 194 v~~~~~l~~~---------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (359)
|+++..+.+. .....+++++.++|||||.+++...
T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~------------------------ 149 (188)
T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS------------------------ 149 (188)
T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc------------------------
Confidence 9987654331 1145689999999999999887421
Q ss_pred CCCCCCCHHHHHHHHHhCCCeEEEEEe
Q 018194 253 ALPGLRSYAEITEIAKRVGFEVVKEKD 279 (359)
Q Consensus 253 ~~~~~~~~~~~~~~l~~aGF~~i~~~~ 279 (359)
.....+++.++++++||++.....
T Consensus 150 ---~~~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 150 ---SLTGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred ---ccCCHHHHHHHHHHCCCeeeeeee
Confidence 112335788999999999876543
No 76
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.63 E-value=2.2e-14 Score=114.24 Aligned_cols=146 Identities=22% Similarity=0.262 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhcC---CCCCC-EEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 018194 105 DATRLHEEMAVDLID---VKAGD-RILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179 (359)
Q Consensus 105 ~~~~~~~~~~~~~~~---~~~~~-~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~ 179 (359)
.+.+++.+++..... +.... +|||+|||.|.+...|++. .....+|+|.|+..++.|+..++..+.++.|+|.+.
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 344555555555443 44333 9999999999999999984 345799999999999999999999999888999999
Q ss_pred CCCCCCCCCCccceEEeccccccc---CC-----HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcC
Q 018194 180 NFLKMPFEDNHFDGAYSIEATCHA---PK-----LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERG 251 (359)
Q Consensus 180 d~~~~~~~~~~fD~v~~~~~l~~~---~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (359)
|+.+..+..++||+|+--..+..+ |+ +...+..+.++|+|||+++|...
T Consensus 126 DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC----------------------- 182 (227)
T KOG1271|consen 126 DITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC----------------------- 182 (227)
T ss_pred eccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec-----------------------
Confidence 999877777899999865544433 22 35678889999999999998521
Q ss_pred CCCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194 252 DALPGLRSYAEITEIAKRVGFEVVKEK 278 (359)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~aGF~~i~~~ 278 (359)
-++.+++.+.++..||+...+.
T Consensus 183 -----N~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 183 -----NFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred -----CccHHHHHHHHhcCCeEEEEee
Confidence 1356799999999999877653
No 77
>PLN03075 nicotianamine synthase; Provisional
Probab=99.63 E-value=1.1e-14 Score=128.32 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=90.0
Q ss_pred cCCCCCCEEEEECCCCChHHHH-HHh--hcCCEEEEEeCCHHHHHHHHHHHHH-cCCCCCeEEEEcCCCCCCCCCCccce
Q 018194 118 IDVKAGDRILDVGCGVGGPMRA-IAA--HSRANVVGITINEYQVNRARLHNKK-AGLDSLCEVVCGNFLKMPFEDNHFDG 193 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~-l~~--~~~~~v~g~D~s~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~fD~ 193 (359)
+...++.+|+|||||.|.++.. ++. .++.+++|+|+++++++.|++.+.. .++.++++|..+|+.+.+...+.||+
T Consensus 119 ~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDl 198 (296)
T PLN03075 119 HVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDV 198 (296)
T ss_pred hhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCE
Confidence 3333778999999998855443 332 3678999999999999999999964 78888899999999886433478999
Q ss_pred EEeccccccc--CCHHHHHHHHHhccCCCCEEEEE
Q 018194 194 AYSIEATCHA--PKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 194 v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
|++. +++++ +++.++++++.+.|+|||.+++.
T Consensus 199 VF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 199 VFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 9999 88887 58999999999999999999984
No 78
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.63 E-value=9.1e-15 Score=125.88 Aligned_cols=112 Identities=23% Similarity=0.263 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP 185 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 185 (359)
......+++.+.+.++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++...++ .+++++.+|+.+..
T Consensus 63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCC
Confidence 3445667777888899999999999999999999864 34799999999999999999999887 57999999997754
Q ss_pred CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
...++||+|++.....+++ ..+.+.|+|||++++.
T Consensus 142 ~~~~~fD~Ii~~~~~~~~~------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKIP------EALIDQLKEGGILVMP 176 (215)
T ss_pred cccCCCCEEEEcCCccccc------HHHHHhcCcCcEEEEE
Confidence 4456899999887655543 5678899999999874
No 79
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.62 E-value=6.4e-14 Score=113.67 Aligned_cols=139 Identities=21% Similarity=0.291 Sum_probs=112.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF 186 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 186 (359)
+..+...+..|.+.++++++|||||||..+.+++. .+.++|+++|-++++++..++++++.+. +|+.++.+|+.+.-.
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhc
Confidence 34455677788999999999999999999999995 3678999999999999999999999994 689999999977422
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEI 266 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (359)
...+||.|+.... .+.+.+|+.+...|||||++++.... +.+.....+.
T Consensus 99 ~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~nait---------------------------lE~~~~a~~~ 147 (187)
T COG2242 99 DLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAIT---------------------------LETLAKALEA 147 (187)
T ss_pred CCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeec---------------------------HHHHHHHHHH
Confidence 2237999999886 46789999999999999999983211 1133467788
Q ss_pred HHhCCC-eEEEEE
Q 018194 267 AKRVGF-EVVKEK 278 (359)
Q Consensus 267 l~~aGF-~~i~~~ 278 (359)
+++.|| ++++..
T Consensus 148 ~~~~g~~ei~~v~ 160 (187)
T COG2242 148 LEQLGGREIVQVQ 160 (187)
T ss_pred HHHcCCceEEEEE
Confidence 999999 665543
No 80
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.61 E-value=1.9e-14 Score=128.38 Aligned_cols=102 Identities=24% Similarity=0.429 Sum_probs=82.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-c---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-S---RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE 187 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~---~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 187 (359)
..+.+.+. .++.+|||+|||+|.++..+++. + +.+++|+|+|+.+++.|+++. +++.+.++|+.++|++
T Consensus 76 ~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~ 148 (272)
T PRK11088 76 NLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFA 148 (272)
T ss_pred HHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCc
Confidence 33444443 34578999999999999998874 2 248999999999999997753 3689999999999999
Q ss_pred CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+++||+|++.+.. ..++++.|+|||||++++..
T Consensus 149 ~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 149 DQSLDAIIRIYAP-------CKAEELARVVKPGGIVITVT 181 (272)
T ss_pred CCceeEEEEecCC-------CCHHHHHhhccCCCEEEEEe
Confidence 9999999987641 23688999999999999864
No 81
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.60 E-value=2.3e-14 Score=131.25 Aligned_cols=137 Identities=26% Similarity=0.301 Sum_probs=108.4
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH 190 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 190 (359)
...++.....+++.+|||+|||+|.++..++. .+.+++|+|+++.|++.+++++...++.. +.+.++|+.++++++++
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSES 248 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCC
Confidence 44556666778899999999999999888766 47899999999999999999998888764 89999999999887889
Q ss_pred cceEEecccccc--------c-CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHH
Q 018194 191 FDGAYSIEATCH--------A-PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYA 261 (359)
Q Consensus 191 fD~v~~~~~l~~--------~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (359)
||+|+++-.... . .-...+++++.++|||||++++.... ..
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~------------------------------~~ 298 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT------------------------------RI 298 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC------------------------------CC
Confidence 999999643211 1 11578999999999999999874211 01
Q ss_pred HHHHHHHhCCCeEEEEEec
Q 018194 262 EITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 262 ~~~~~l~~aGF~~i~~~~~ 280 (359)
++.+.++++|| ++.....
T Consensus 299 ~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 299 DLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred CHHHHHhhcCc-chheeee
Confidence 45577999999 7765543
No 82
>PTZ00146 fibrillarin; Provisional
Probab=99.60 E-value=6.2e-14 Score=123.08 Aligned_cols=136 Identities=14% Similarity=0.107 Sum_probs=97.2
Q ss_pred hcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCcc
Q 018194 117 LIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM---PFEDNHF 191 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~f 191 (359)
.+.+.++++|||+|||+|.++..+++.. ...|+++|+|+.+++...+.+... .||.++..|+... ....++|
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCC
Confidence 4567899999999999999999999864 358999999998665554443322 4789999998652 1234589
Q ss_pred ceEEecccccccCC-HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHH----HHH
Q 018194 192 DGAYSIEATCHAPK-LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEI----TEI 266 (359)
Q Consensus 192 D~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 266 (359)
|+|++... .+| ...++.++.++|||||.+++. +-.... + .-.+++++ .++
T Consensus 204 DvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~-ika~~i-d--------------------~g~~pe~~f~~ev~~ 258 (293)
T PTZ00146 204 DVIFADVA---QPDQARIVALNAQYFLKNGGHFIIS-IKANCI-D--------------------STAKPEVVFASEVQK 258 (293)
T ss_pred CEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEE-Eecccc-c--------------------cCCCHHHHHHHHHHH
Confidence 99998774 244 446667999999999999983 222110 0 01112222 388
Q ss_pred HHhCCCeEEEEEec
Q 018194 267 AKRVGFEVVKEKDL 280 (359)
Q Consensus 267 l~~aGF~~i~~~~~ 280 (359)
|+++||+.++..++
T Consensus 259 L~~~GF~~~e~v~L 272 (293)
T PTZ00146 259 LKKEGLKPKEQLTL 272 (293)
T ss_pred HHHcCCceEEEEec
Confidence 99999999988776
No 83
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.59 E-value=4.3e-14 Score=116.98 Aligned_cols=118 Identities=29% Similarity=0.396 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 018194 103 HRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF 181 (359)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 181 (359)
+....+.+.+.+... ++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++...++.. ++++..|.
T Consensus 16 ~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~ 90 (170)
T PF05175_consen 16 LDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDL 90 (170)
T ss_dssp HHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESST
T ss_pred CCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccc
Confidence 344444455544444 6779999999999999999985 44589999999999999999999988765 99999999
Q ss_pred CCCCCCCCccceEEecccccccCC-----HHHHHHHHHhccCCCCEEEEE
Q 018194 182 LKMPFEDNHFDGAYSIEATCHAPK-----LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 182 ~~~~~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.+. .++++||+|+++-.++.-.+ ...++++..+.|||||.++++
T Consensus 91 ~~~-~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 91 FEA-LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp TTT-CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccc-ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 773 34689999999977654433 578999999999999999774
No 84
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.59 E-value=8.2e-14 Score=123.12 Aligned_cols=138 Identities=24% Similarity=0.322 Sum_probs=105.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE 187 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 187 (359)
...+.++..+. ..+.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.++++....++. +++++++|+.+ +++
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~~ 151 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-PLP 151 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-cCc
Confidence 33444444443 24569999999999999999985 5679999999999999999999887775 79999999976 456
Q ss_pred CCccceEEecccccc------cC--------------------CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHH
Q 018194 188 DNHFDGAYSIEATCH------AP--------------------KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEH 241 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~------~~--------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 241 (359)
.++||+|+++-.... +. ....+++++.++|+|||.+++..
T Consensus 152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-------------- 217 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-------------- 217 (251)
T ss_pred CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE--------------
Confidence 789999998643221 10 12467899999999999998731
Q ss_pred HHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 018194 242 VDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKE 277 (359)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~ 277 (359)
......++.++|+++||+.++.
T Consensus 218 --------------~~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 218 --------------GYDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred --------------CccHHHHHHHHHHhCCCCceEE
Confidence 0112357889999999988765
No 85
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.59 E-value=4e-14 Score=127.89 Aligned_cols=117 Identities=14% Similarity=0.171 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-
Q 018194 107 TRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK- 183 (359)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~- 183 (359)
.+.....++..+ .++.+|||+|||+|..+..|++.. +.+|+++|+|+.|++.++++........++.++++|+.+
T Consensus 50 l~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 50 LERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred HHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 344445555544 356799999999999999998863 579999999999999999887654322357788999986
Q ss_pred CCCCCC----ccceEEecccccccC--CHHHHHHHHHhccCCCCEEEE
Q 018194 184 MPFEDN----HFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 184 ~~~~~~----~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~ 225 (359)
.+++.. ...++++..++++++ +...+|++++++|+|||.+++
T Consensus 128 ~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 128 LALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred hhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 343332 223444555677775 466899999999999999986
No 86
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.58 E-value=6.6e-14 Score=125.68 Aligned_cols=127 Identities=21% Similarity=0.263 Sum_probs=98.6
Q ss_pred CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT 200 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 200 (359)
.++.+|||+|||+|.++..+++....+|+++|+|+.+++.++++....++..++.+...+... ...++||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecCH
Confidence 367899999999999998888754469999999999999999999988877777777776433 335789999997653
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194 201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~ 280 (359)
. ....++.++.++|||||++++...... ...++.+.+++. |++++....
T Consensus 236 ~---~l~~ll~~~~~~LkpgG~li~sgi~~~---------------------------~~~~v~~~~~~~-f~~~~~~~~ 284 (288)
T TIGR00406 236 E---VIKELYPQFSRLVKPGGWLILSGILET---------------------------QAQSVCDAYEQG-FTVVEIRQR 284 (288)
T ss_pred H---HHHHHHHHHHHHcCCCcEEEEEeCcHh---------------------------HHHHHHHHHHcc-CceeeEecc
Confidence 3 356789999999999999998532111 235677778776 988776543
No 87
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.58 E-value=1.1e-14 Score=123.11 Aligned_cols=104 Identities=25% Similarity=0.325 Sum_probs=87.2
Q ss_pred CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEec
Q 018194 122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAYSI 197 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~ 197 (359)
...+|||||||+|.++..+++ .++..|+|+|+++.+++.|+++....++. |++++++|+.+++ ++++++|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 456999999999999999998 46789999999999999999998888875 8999999997643 456789999988
Q ss_pred ccccccCC--------HHHHHHHHHhccCCCCEEEEE
Q 018194 198 EATCHAPK--------LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 198 ~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+...+... ...+++++.++|||||.+++.
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 75443322 157999999999999999874
No 88
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.58 E-value=4.1e-14 Score=118.08 Aligned_cols=103 Identities=22% Similarity=0.309 Sum_probs=77.3
Q ss_pred CCCC-EEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194 121 KAGD-RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA 199 (359)
Q Consensus 121 ~~~~-~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 199 (359)
.++. .++|+|||+|..++.++.++ .+|+++|+|+.|++.|+++....-......+...+..++.-.+++.|+|++..+
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3443 89999999998888888875 599999999999999988643322111122333333333334789999999999
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEE
Q 018194 200 TCHAPKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 200 l~~~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
+|++ |.+.+++++.|+||+.|.++.
T Consensus 110 ~HWF-dle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 110 VHWF-DLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred HHhh-chHHHHHHHHHHcCCCCCEEE
Confidence 9988 789999999999998775444
No 89
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=7.6e-14 Score=122.57 Aligned_cols=155 Identities=26% Similarity=0.362 Sum_probs=110.4
Q ss_pred cCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 018194 88 WGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK 167 (359)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~ 167 (359)
+++.+.|+.+++..+ ....+.+-+.+. ++.+|||+|||+|.+++..++....+|+|+|++|..++.+++++..
T Consensus 135 lDPGlAFGTG~HpTT-----~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~ 207 (300)
T COG2264 135 LDPGLAFGTGTHPTT-----SLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARL 207 (300)
T ss_pred EccccccCCCCChhH-----HHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHH
Confidence 456666665544332 233333333332 7899999999999999999886445799999999999999999999
Q ss_pred cCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhh
Q 018194 168 AGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQG 247 (359)
Q Consensus 168 ~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 247 (359)
++++..+.....+....+ ..++||+|+++-... -...+...+.+.|||||++++.-....
T Consensus 208 N~v~~~~~~~~~~~~~~~-~~~~~DvIVANILA~---vl~~La~~~~~~lkpgg~lIlSGIl~~---------------- 267 (300)
T COG2264 208 NGVELLVQAKGFLLLEVP-ENGPFDVIVANILAE---VLVELAPDIKRLLKPGGRLILSGILED---------------- 267 (300)
T ss_pred cCCchhhhcccccchhhc-ccCcccEEEehhhHH---HHHHHHHHHHHHcCCCceEEEEeehHh----------------
Confidence 887643334344443322 236999999976321 245888999999999999998532111
Q ss_pred hhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194 248 IERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~ 280 (359)
..+.+.+.++++||+++++...
T Consensus 268 -----------q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 268 -----------QAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred -----------HHHHHHHHHHhCCCeEeEEEec
Confidence 1257888999999999987654
No 90
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.56 E-value=4.7e-14 Score=129.54 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=92.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCCCCCCCC
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLD--SLCEVVCGNFLKMPFED 188 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~ 188 (359)
+.+++.++...+.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.++++++..+.. .++++...|+... ++.
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~ 296 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEP 296 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCC
Confidence 45666776655679999999999999999874 6789999999999999999998766543 3689999998653 345
Q ss_pred CccceEEeccccccc---C--CHHHHHHHHHhccCCCCEEEEE
Q 018194 189 NHFDGAYSIEATCHA---P--KLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~---~--~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.+||+|+++-.++.. . ...++++++.++|+|||.++++
T Consensus 297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 689999998766543 2 2458899999999999999986
No 91
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.56 E-value=3.7e-14 Score=125.89 Aligned_cols=151 Identities=29% Similarity=0.396 Sum_probs=106.6
Q ss_pred cCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 018194 88 WGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK 167 (359)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~ 167 (359)
.++.+.|+.+ ..+..+...+.+.+. ..++.+|||+|||+|.++...++....+|+++|++|..++.|++++..
T Consensus 134 idPg~AFGTG-----~H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~ 206 (295)
T PF06325_consen 134 IDPGMAFGTG-----HHPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAEL 206 (295)
T ss_dssp ESTTSSS-SS-----HCHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHH
T ss_pred ECCCCcccCC-----CCHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHH
Confidence 4455555443 334445555555555 346789999999999999988886445899999999999999999999
Q ss_pred cCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhh
Q 018194 168 AGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQG 247 (359)
Q Consensus 168 ~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 247 (359)
+++..++.+. ...+ ....+||+|+++-... -...++..+.++|+|||++++.-....
T Consensus 207 N~~~~~~~v~--~~~~--~~~~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~~---------------- 263 (295)
T PF06325_consen 207 NGVEDRIEVS--LSED--LVEGKFDLVVANILAD---VLLELAPDIASLLKPGGYLILSGILEE---------------- 263 (295)
T ss_dssp TT-TTCEEES--CTSC--TCCS-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEGG----------------
T ss_pred cCCCeeEEEE--Eecc--cccccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEccccHH----------------
Confidence 9998766552 2222 2358999999976432 246778889999999999998643322
Q ss_pred hhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194 248 IERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~ 280 (359)
..+.+.+.+++ ||++++....
T Consensus 264 -----------~~~~v~~a~~~-g~~~~~~~~~ 284 (295)
T PF06325_consen 264 -----------QEDEVIEAYKQ-GFELVEEREE 284 (295)
T ss_dssp -----------GHHHHHHHHHT-TEEEEEEEEE
T ss_pred -----------HHHHHHHHHHC-CCEEEEEEEE
Confidence 23577788876 9999887664
No 92
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.55 E-value=3e-14 Score=118.85 Aligned_cols=152 Identities=22% Similarity=0.248 Sum_probs=109.7
Q ss_pred EEEEECCCCChHHHHHHh-hc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEEec
Q 018194 125 RILDVGCGVGGPMRAIAA-HS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM----PFEDNHFDGAYSI 197 (359)
Q Consensus 125 ~vLDiGcG~G~~~~~l~~-~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~v~~~ 197 (359)
+||+||||.|.....+.+ .+ +..|+++|.||..++..+++..... .++.....|+... +...+++|+|++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 899999999999988877 33 3899999999999999988765432 3455555565442 3567899999999
Q ss_pred ccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCch-HHHHHHhhhhcCCCCC-CCCCHHHHHHHHHhCCCe
Q 018194 198 EATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK-EHVDIIQGIERGDALP-GLRSYAEITEIAKRVGFE 273 (359)
Q Consensus 198 ~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~aGF~ 273 (359)
++|..++ ....++.+++++|||||.+++.|+...+.-..... ...--...+..+++.. .+++.+++.+++.++||.
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~ 231 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFE 231 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence 9998875 57899999999999999999987655321100000 0000011223344443 577999999999999999
Q ss_pred EEEEE
Q 018194 274 VVKEK 278 (359)
Q Consensus 274 ~i~~~ 278 (359)
.++..
T Consensus 232 ~~~~~ 236 (264)
T KOG2361|consen 232 EVQLE 236 (264)
T ss_pred hhccc
Confidence 87653
No 93
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.55 E-value=1.8e-13 Score=116.13 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCC
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MPF 186 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~ 186 (359)
.....+...+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.++++++..++ .+++++.+|+.+ ++.
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhh
Confidence 34445677778888999999999999999999864 567999999999999999999988876 479999999865 222
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
....+|.++... ..+...+++++.++|+|||++++..
T Consensus 106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 123467765532 2356899999999999999999864
No 94
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.54 E-value=4.5e-13 Score=119.83 Aligned_cols=104 Identities=21% Similarity=0.283 Sum_probs=84.6
Q ss_pred CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA 199 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 199 (359)
.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|++++...++..+++++++|+.+ +++.++||+|+++-.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 44579999999999999999985 5689999999999999999999988887789999999865 234568999998621
Q ss_pred ------c-------cccC------------CHHHHHHHHHhccCCCCEEEE
Q 018194 200 ------T-------CHAP------------KLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 200 ------l-------~~~~------------~~~~~l~~~~~~LkpgG~l~~ 225 (359)
+ .|-| ....+++++.++|+|||++++
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 1111 135678999999999999986
No 95
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.8e-13 Score=116.04 Aligned_cols=137 Identities=22% Similarity=0.290 Sum_probs=115.4
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED 188 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 188 (359)
..+|+..+++.||++|||.|.|+|.++..|+.. +..+|+.+|+.++..+.|++++...++.+++++..+|+.+.-+++
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 467888999999999999999999999999974 446999999999999999999999999888999999999866554
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK 268 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (359)
.||+|+.. +|++..++..+.+.|||||.++++..+.. ......+.|+
T Consensus 163 -~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~ve---------------------------Qv~kt~~~l~ 209 (256)
T COG2519 163 -DVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTVE---------------------------QVEKTVEALR 209 (256)
T ss_pred -ccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCCHH---------------------------HHHHHHHHHH
Confidence 89999884 58999999999999999999998532111 1235566788
Q ss_pred hCCCeEEEEEec
Q 018194 269 RVGFEVVKEKDL 280 (359)
Q Consensus 269 ~aGF~~i~~~~~ 280 (359)
+.||..++...+
T Consensus 210 ~~g~~~ie~~E~ 221 (256)
T COG2519 210 ERGFVDIEAVET 221 (256)
T ss_pred hcCccchhhhee
Confidence 889998876554
No 96
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.54 E-value=1.7e-13 Score=117.76 Aligned_cols=111 Identities=23% Similarity=0.225 Sum_probs=90.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED 188 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 188 (359)
.....++..+.+.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++++...++. ++++..+|..+...+.
T Consensus 65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 142 (212)
T PRK00312 65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAY 142 (212)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcC
Confidence 345566777888899999999999999998888764 59999999999999999999888765 5999999986632234
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
++||+|++....+++ .+.+.+.|+|||++++..
T Consensus 143 ~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 143 APFDRILVTAAAPEI------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred CCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEE
Confidence 789999998766554 356789999999998853
No 97
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.54 E-value=2.3e-13 Score=116.44 Aligned_cols=141 Identities=23% Similarity=0.252 Sum_probs=114.4
Q ss_pred HHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCc
Q 018194 114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNH 190 (359)
Q Consensus 114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~ 190 (359)
+..+.......+|||+|||+|.++..++++ ..+++++||+++.+.+.|++..+..++.+++++++.|+.++. ....+
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~ 115 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS 115 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc
Confidence 445556666889999999999999999997 559999999999999999999999999999999999998864 34457
Q ss_pred cceEEeccccccc------------------CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCC
Q 018194 191 FDGAYSIEATCHA------------------PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGD 252 (359)
Q Consensus 191 fD~v~~~~~l~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (359)
||+|+|+--..-. -+.+.+++.+.++|||||.+.++-
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~------------------------- 170 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH------------------------- 170 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe-------------------------
Confidence 9999997543321 136789999999999999999852
Q ss_pred CCCCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 018194 253 ALPGLRSYAEITEIAKRVGFEVVKEKDLAK 282 (359)
Q Consensus 253 ~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~ 282 (359)
+.....++.++|++.+|...+...+..
T Consensus 171 ---r~erl~ei~~~l~~~~~~~k~i~~V~p 197 (248)
T COG4123 171 ---RPERLAEIIELLKSYNLEPKRIQFVYP 197 (248)
T ss_pred ---cHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 001235788999999999988877643
No 98
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.53 E-value=4.5e-13 Score=120.20 Aligned_cols=103 Identities=24% Similarity=0.306 Sum_probs=84.6
Q ss_pred CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc--
Q 018194 122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE-- 198 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~-- 198 (359)
+..+|||+|||+|.++..++.. ++.+|+++|+|+.+++.|++++...++..+++++++|+.+ +++.++||+|+++-
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPy 192 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPY 192 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCC
Confidence 3369999999999999999985 5579999999999999999999888876679999999876 34445899999862
Q ss_pred -----------cccccC------------CHHHHHHHHHhccCCCCEEEE
Q 018194 199 -----------ATCHAP------------KLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 199 -----------~l~~~~------------~~~~~l~~~~~~LkpgG~l~~ 225 (359)
+..|-| ....++.++.+.|+|||++++
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222322 255788999999999999886
No 99
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.53 E-value=1.2e-13 Score=126.15 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=93.6
Q ss_pred HHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCC
Q 018194 113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDN 189 (359)
Q Consensus 113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~ 189 (359)
.+...+....+..+||||||+|..+..+|+ .++..++|+|+++.++..+.+++...++. |+.++++|+..+ .++++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCC
Confidence 445555555677999999999999999998 47789999999999999999999888875 799999999764 46789
Q ss_pred ccceEEecccccccCCH------HHHHHHHHhccCCCCEEEEE
Q 018194 190 HFDGAYSIEATCHAPKL------EDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~------~~~l~~~~~~LkpgG~l~~~ 226 (359)
++|.|++++...|.... ..+++++.|+|+|||.+.+.
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 99999987654432221 68999999999999999884
No 100
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.53 E-value=3.5e-14 Score=110.11 Aligned_cols=105 Identities=31% Similarity=0.471 Sum_probs=88.8
Q ss_pred CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEecccc
Q 018194 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDGAYSIEAT 200 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l 200 (359)
|.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++..+++++++|+.+.. +++++||+|+++-..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 568999999999999999886458999999999999999999999988788999999998865 678999999998766
Q ss_pred cccC--------CHHHHHHHHHhccCCCCEEEEEE
Q 018194 201 CHAP--------KLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 201 ~~~~--------~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.... ....+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 5321 24688999999999999998853
No 101
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.7e-13 Score=112.54 Aligned_cols=112 Identities=26% Similarity=0.294 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE 187 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 187 (359)
..+...+++.+.++++++|||||||+|..+.-|++..+ +|+.+|..+...+.|+++.+..|+. ||.++++|...---+
T Consensus 58 P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~ 135 (209)
T COG2518 58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPE 135 (209)
T ss_pred cHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCC
Confidence 34567788999999999999999999999999999655 9999999999999999999999986 599999999773224
Q ss_pred CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.++||.|+...+...+| +.+.+.|||||++++..
T Consensus 136 ~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 136 EAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEEE
Confidence 58999999999887776 35678899999999853
No 102
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.52 E-value=7.3e-13 Score=121.83 Aligned_cols=140 Identities=17% Similarity=0.200 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194 106 ATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM 184 (359)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 184 (359)
..+.+.+.+...+ .++.+|||+|||+|.++..++. .++++|+++|+|+.+++.|+++....+. +++++++|+.+.
T Consensus 237 eTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~ 312 (423)
T PRK14966 237 ETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDT 312 (423)
T ss_pred cHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcc
Confidence 3444555555543 3556999999999999999887 4678999999999999999999887764 699999998764
Q ss_pred CCC-CCccceEEeccccccc---------------------CC----HHHHHHHHHhccCCCCEEEEEEeeeCcccccCc
Q 018194 185 PFE-DNHFDGAYSIEATCHA---------------------PK----LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN 238 (359)
Q Consensus 185 ~~~-~~~fD~v~~~~~l~~~---------------------~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 238 (359)
.++ .++||+|+++-..... .| ...+++.+.+.|+|||.+++. ..
T Consensus 313 ~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE-iG--------- 382 (423)
T PRK14966 313 DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE-HG--------- 382 (423)
T ss_pred ccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE-EC---------
Confidence 332 4589999996532100 01 236677777899999998762 11
Q ss_pred hHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 018194 239 KEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKE 277 (359)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~ 277 (359)
....+.+.+++++.||..++.
T Consensus 383 ------------------~~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 383 ------------------FDQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred ------------------ccHHHHHHHHHHHCCCcEEEE
Confidence 112467889999999987664
No 103
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.52 E-value=2.7e-13 Score=117.21 Aligned_cols=140 Identities=21% Similarity=0.343 Sum_probs=110.2
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF 186 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 186 (359)
.....|+..+++.||++|||.|.|+|.++..|++. +..+|+.+|+.++..+.|+++++..++.+++++.+.|+.+..+
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 34567888999999999999999999999999984 4579999999999999999999999999999999999976444
Q ss_pred C---CCccceEEecccccccCCHHHHHHHHHhcc-CCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHH
Q 018194 187 E---DNHFDGAYSIEATCHAPKLEDVYAEVFRVL-KPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAE 262 (359)
Q Consensus 187 ~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (359)
+ +..+|.|+.. +|++..++..+.+.| ||||+++++..+.. ....
T Consensus 107 ~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie---------------------------Qv~~ 154 (247)
T PF08704_consen 107 DEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCIE---------------------------QVQK 154 (247)
T ss_dssp STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSHH---------------------------HHHH
T ss_pred cccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCHH---------------------------HHHH
Confidence 2 3679999874 589999999999999 89999998532221 1235
Q ss_pred HHHHHHhCCCeEEEEEec
Q 018194 263 ITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 263 ~~~~l~~aGF~~i~~~~~ 280 (359)
..+.|++.||..+++..+
T Consensus 155 ~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 155 TVEALREHGFTDIETVEV 172 (247)
T ss_dssp HHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHCCCeeeEEEEE
Confidence 667888999999886655
No 104
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.52 E-value=9e-13 Score=118.10 Aligned_cols=140 Identities=24% Similarity=0.292 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF 186 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 186 (359)
+...+.+.......++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++.. .....++.++.+|+.+. +
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~ 171 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-L 171 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-C
Confidence 334444444555667789999999999999999885 46899999999999999999887 33345799999998653 3
Q ss_pred CCCccceEEeccccc--------------cc------------CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchH
Q 018194 187 EDNHFDGAYSIEATC--------------HA------------PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKE 240 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~--------------~~------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 240 (359)
+.++||+|+++-... +- .....+++++.++|+|||++++.. .
T Consensus 172 ~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g----------- 239 (275)
T PRK09328 172 PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-G----------- 239 (275)
T ss_pred CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-C-----------
Confidence 457899999863211 10 123568888889999999998721 0
Q ss_pred HHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 018194 241 HVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKE 277 (359)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~ 277 (359)
......+.+++++.||..++.
T Consensus 240 ----------------~~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 240 ----------------YDQGEAVRALLAAAGFADVET 260 (275)
T ss_pred ----------------chHHHHHHHHHHhCCCceeEE
Confidence 011246888999999986655
No 105
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.52 E-value=7.9e-13 Score=119.30 Aligned_cols=102 Identities=22% Similarity=0.266 Sum_probs=83.6
Q ss_pred CCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc--
Q 018194 123 GDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA-- 199 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~-- 199 (359)
+.+|||+|||+|.++..++.. ++.+|+++|+|+.+++.|++++...++.++++++++|+.+ .++.++||+|+++-.
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 368999999999999999874 5689999999999999999999988887789999999865 234568999998621
Q ss_pred -----------ccccC------------CHHHHHHHHHhccCCCCEEEE
Q 018194 200 -----------TCHAP------------KLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 200 -----------l~~~~------------~~~~~l~~~~~~LkpgG~l~~ 225 (359)
+.|-| ....+++++.+.|+|||++++
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 11211 135788999999999999987
No 106
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.51 E-value=2e-13 Score=124.71 Aligned_cols=112 Identities=19% Similarity=0.268 Sum_probs=90.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH 190 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 190 (359)
+.++..+......+|||+|||+|.++..+++. ++.+|+++|+|+.+++.++++.+..++. .++...|.... ..++
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~--~~~~ 261 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD--IKGR 261 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc--cCCC
Confidence 33445554444568999999999999999885 5679999999999999999999887764 57778887653 2578
Q ss_pred cceEEecccccccC-----CHHHHHHHHHhccCCCCEEEEEE
Q 018194 191 FDGAYSIEATCHAP-----KLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 191 fD~v~~~~~l~~~~-----~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
||+|+++..+|+.. ....+++++.+.|||||.++++.
T Consensus 262 fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 262 FDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred ccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 99999998887632 35789999999999999998853
No 107
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.50 E-value=1.5e-13 Score=116.56 Aligned_cols=113 Identities=27% Similarity=0.354 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194 107 TRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM 184 (359)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 184 (359)
+......+++.+.+++|++|||||||+|..+..++...+ ..|+++|+.+..++.|++++...++. |+.++++|....
T Consensus 57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g 135 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEG 135 (209)
T ss_dssp -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGT
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhc
Confidence 355677788899999999999999999999999998533 47999999999999999999998875 899999998764
Q ss_pred CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 185 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
-...++||.|++..+...+| ..+.+.||+||++++.
T Consensus 136 ~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp TGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEE
T ss_pred cccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEE
Confidence 33457899999998876554 3577789999999984
No 108
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.50 E-value=7.5e-13 Score=116.17 Aligned_cols=143 Identities=19% Similarity=0.194 Sum_probs=107.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH 190 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 190 (359)
..+....+..+..+|||||+|+|.++..+++ +|+.+++.+|. |..++.+++ .++|+++.+|+. -++|.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~-- 158 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPV-- 158 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSS--
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcc--
Confidence 4556667777788999999999999999987 68899999999 888888887 468999999998 46665
Q ss_pred cceEEecccccccCC--HHHHHHHHHhccCCC--CEEEEEEeeeCcccccCchH----HHHHHhhhhcCCCCCCCCCHHH
Q 018194 191 FDGAYSIEATCHAPK--LEDVYAEVFRVLKPG--SLYVSYEWVTTDKYEAENKE----HVDIIQGIERGDALPGLRSYAE 262 (359)
Q Consensus 191 fD~v~~~~~l~~~~~--~~~~l~~~~~~Lkpg--G~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 262 (359)
+|+|+..+++|++++ -..+|+++++.|+|| |+|++.|....+.-...... ...+......+ ...++.++
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~---G~~rt~~e 235 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTG---GKERTEEE 235 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHS---SS-EEHHH
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcC---CCCcCHHH
Confidence 999999999999985 568999999999999 99999998875543332222 22222222222 24568889
Q ss_pred HHHHHH
Q 018194 263 ITEIAK 268 (359)
Q Consensus 263 ~~~~l~ 268 (359)
+.++|+
T Consensus 236 ~~~ll~ 241 (241)
T PF00891_consen 236 WEALLK 241 (241)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 988874
No 109
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.47 E-value=6.1e-13 Score=110.84 Aligned_cols=146 Identities=21% Similarity=0.226 Sum_probs=101.7
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC 201 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 201 (359)
...+.||+|+|.|+.+..+....-.+|..+|+.+..++.|++..... .....++.+..++++..+.++||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 34699999999999998876533459999999999999999876542 12345788888887765567999999999999
Q ss_pred ccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEe
Q 018194 202 HAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKD 279 (359)
Q Consensus 202 ~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~ 279 (359)
|+.| ...+|+++...|+|+|.+++=|......... .......-.++.+.+.+++++||++++..+.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~------------~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDE------------FDEEDSSVTRSDEHFRELFKQAGLRLVKEEK 201 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEE------------EETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcc------------cCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence 9984 7799999999999999999977655432211 1111111235678999999999999999876
Q ss_pred c
Q 018194 280 L 280 (359)
Q Consensus 280 ~ 280 (359)
-
T Consensus 202 Q 202 (218)
T PF05891_consen 202 Q 202 (218)
T ss_dssp -
T ss_pred c
Confidence 5
No 110
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.47 E-value=1.7e-13 Score=113.13 Aligned_cols=151 Identities=16% Similarity=0.222 Sum_probs=109.2
Q ss_pred CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc
Q 018194 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH 202 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 202 (359)
...++|||||.|.+.+.+....-.+++-+|.|-.|++.++..-. .+ -.+....+|-+.++|.++++|+|++..++|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~--i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PS--IETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cc--eEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 34799999999999999877533489999999999998875421 22 2467889999999999999999999999999
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCC---CCCCHHHHHHHHHhCCCeEEEEE
Q 018194 203 APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALP---GLRSYAEITEIAKRVGFEVVKEK 278 (359)
Q Consensus 203 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~aGF~~i~~~ 278 (359)
..|.+..+.++...|||+|.++-.-+.....|...... .+...-..+.-.| ++....++-.+|..|||..+.+.
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~sl--qLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSL--QLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHh--hHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence 99999999999999999999986422222111111110 0111111222222 34455788899999999987654
No 111
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.47 E-value=9.1e-13 Score=112.50 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=77.5
Q ss_pred CCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCC
Q 018194 120 VKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------FEDN 189 (359)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~ 189 (359)
++++.+|||||||+|.++..+++.. ..+|+++|+++ |. .. +++.++++|+.+.+ +.++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~-~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PI-VGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CC-CCcEEEecCCCChHHHHHHHHHhCCC
Confidence 4678899999999999999998863 36999999998 21 12 35899999998853 5678
Q ss_pred ccceEEecccccccCCH-----------HHHHHHHHhccCCCCEEEEEEe
Q 018194 190 HFDGAYSIEATCHAPKL-----------EDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
+||+|++..+.++..++ ..+|+++.++|||||.+++..+
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99999998766554321 4689999999999999998543
No 112
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=5.7e-13 Score=120.24 Aligned_cols=111 Identities=18% Similarity=0.235 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF 186 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 186 (359)
.....+++.+.++++.+|||+|||+|.++..+++..+ ..|+++|+++.+++.|+++....+. +++.++++|+.+...
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~ 145 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVP 145 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhccc
Confidence 3455667777888899999999999999999998543 4799999999999999999988886 479999999877654
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..++||+|++...+.+++ ..+.+.|+|||++++.
T Consensus 146 ~~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 146 EFAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVP 179 (322)
T ss_pred ccCCccEEEECCchHHhH------HHHHHhcCCCCEEEEE
Confidence 457899999986655443 3567899999998874
No 113
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.47 E-value=5.8e-13 Score=109.45 Aligned_cols=113 Identities=24% Similarity=0.377 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCCCC--CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-
Q 018194 107 TRLHEEMAVDLIDVKA--GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK- 183 (359)
Q Consensus 107 ~~~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~- 183 (359)
+..+....++++.+++ ..-|||||||+|..+..+.. .|...+|+|+|+.|++.|.++--+ -.++.+|+-.
T Consensus 33 Q~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~-~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~G 105 (270)
T KOG1541|consen 33 QAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD-SGHQWIGVDISPSMLEQAVERELE------GDLILCDMGEG 105 (270)
T ss_pred hHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc-CCceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCC
Confidence 4445555566666655 67899999999999888877 467999999999999999874221 2577778754
Q ss_pred CCCCCCccceEEecccccccC-------C----HHHHHHHHHhccCCCCEEEEE
Q 018194 184 MPFEDNHFDGAYSIEATCHAP-------K----LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 184 ~~~~~~~fD~v~~~~~l~~~~-------~----~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+||..++||.+++..++.++- + +..++..++.+|++|++.++.
T Consensus 106 lpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 106 LPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred CCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 789999999999988776652 1 346788899999999999874
No 114
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.46 E-value=6.4e-13 Score=113.22 Aligned_cols=148 Identities=15% Similarity=0.119 Sum_probs=99.8
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC 201 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 201 (359)
...++||||+|.|..+..++... .+|++.|.|+.|..+.+++ | .+ ..|..++.-.+.+||+|.|.++|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~k----g----~~--vl~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSKK----G----FT--VLDIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHhC----C----Ce--EEehhhhhccCCceEEEeehhhhh
Confidence 35689999999999999999865 4899999999998776654 2 22 223333433356899999999999
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCch-HHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194 202 HAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK-EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 202 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~ 280 (359)
...+|..+|+++++.|+|+|++++.-..+-..|.+... ....-...+.. .+..--.....+.+.|+.+||+++.....
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~-~g~~~E~~v~~l~~v~~p~GF~v~~~tr~ 241 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPV-KGATFEEQVSSLVNVFEPAGFEVERWTRL 241 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCC-CCCcHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 99999999999999999999999865444333322211 00000000000 00000001234458999999999988765
Q ss_pred C
Q 018194 281 A 281 (359)
Q Consensus 281 ~ 281 (359)
.
T Consensus 242 P 242 (265)
T PF05219_consen 242 P 242 (265)
T ss_pred C
Confidence 3
No 115
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.45 E-value=3.8e-12 Score=122.51 Aligned_cols=131 Identities=20% Similarity=0.234 Sum_probs=98.8
Q ss_pred CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc-
Q 018194 122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA- 199 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~- 199 (359)
++.+|||+|||+|.++..++.. ++++|+++|+|+.+++.|++++...++.++++++++|+.+ .++.++||+|+++-.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 3568999999999999998874 6789999999999999999999888877789999999865 234568999998531
Q ss_pred -------------ccccC------------CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCC
Q 018194 200 -------------TCHAP------------KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDAL 254 (359)
Q Consensus 200 -------------l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (359)
..|-| ....+++++.++|+|||.+++. ..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig------------------------- 270 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IG------------------------- 270 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-EC-------------------------
Confidence 11111 1345678888999999999862 11
Q ss_pred CCCCCHHHHHHHHHhCCCeEEEE-EecC
Q 018194 255 PGLRSYAEITEIAKRVGFEVVKE-KDLA 281 (359)
Q Consensus 255 ~~~~~~~~~~~~l~~aGF~~i~~-~~~~ 281 (359)
....+.+.+++++.||..+.. .++.
T Consensus 271 --~~q~~~v~~~~~~~g~~~~~~~~D~~ 296 (506)
T PRK01544 271 --FKQEEAVTQIFLDHGYNIESVYKDLQ 296 (506)
T ss_pred --CchHHHHHHHHHhcCCCceEEEecCC
Confidence 112357788888899986653 3443
No 116
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.44 E-value=6.1e-12 Score=104.45 Aligned_cols=166 Identities=21% Similarity=0.335 Sum_probs=120.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF---- 186 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---- 186 (359)
+.+.+.++. .+.+|||||||||..+.++++. +..+..-.|+++..+...+......+++.-..-+..|+...+.
T Consensus 16 ~vL~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~ 94 (204)
T PF06080_consen 16 EVLKQYLPD-SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWEL 94 (204)
T ss_pred HHHHHHhCc-cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccc
Confidence 334444432 2336999999999999999984 7788889999999988888777777765444556677766432
Q ss_pred ----CCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCc-ccc-cCchHHHHHHhhhhcCCCCCCCC
Q 018194 187 ----EDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTD-KYE-AENKEHVDIIQGIERGDALPGLR 258 (359)
Q Consensus 187 ----~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 258 (359)
..++||+|++.+++|.++ ..+.+++.+.++|+|||.|+++.....+ .+. +.+..+...+ ...+....++
T Consensus 95 ~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sL---r~rdp~~GiR 171 (204)
T PF06080_consen 95 PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASL---RSRDPEWGIR 171 (204)
T ss_pred ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHH---hcCCCCcCcc
Confidence 245899999999999876 4678999999999999999998644422 222 2222333333 3333344677
Q ss_pred CHHHHHHHHHhCCCeEEEEEecC
Q 018194 259 SYAEITEIAKRVGFEVVKEKDLA 281 (359)
Q Consensus 259 ~~~~~~~~l~~aGF~~i~~~~~~ 281 (359)
+.+++.++.+++|++.++..++.
T Consensus 172 D~e~v~~lA~~~GL~l~~~~~MP 194 (204)
T PF06080_consen 172 DIEDVEALAAAHGLELEEDIDMP 194 (204)
T ss_pred CHHHHHHHHHHCCCccCcccccC
Confidence 88999999999999988776663
No 117
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=2.7e-12 Score=121.85 Aligned_cols=116 Identities=17% Similarity=0.276 Sum_probs=94.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--- 185 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 185 (359)
...+...+...+|.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...|+. +++++++|+.+++
T Consensus 241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELK 319 (434)
T ss_pred HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccccc
Confidence 3445566778889999999999999999998853 369999999999999999999999875 6999999998765
Q ss_pred -CCCCccceEEec------ccccccCC----------------HHHHHHHHHhccCCCCEEEEEE
Q 018194 186 -FEDNHFDGAYSI------EATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 186 -~~~~~fD~v~~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+..++||.|++. .++.+-++ ..++|.++.++|||||+++..+
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 345789999974 23333333 3578999999999999998754
No 118
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.44 E-value=1e-11 Score=105.97 Aligned_cols=140 Identities=15% Similarity=0.096 Sum_probs=104.3
Q ss_pred cCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH-----------cCCCCCeEEEEcCCCCCCC
Q 018194 118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK-----------AGLDSLCEVVCGNFLKMPF 186 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~-----------~~~~~~i~~~~~d~~~~~~ 186 (359)
+...++.+||+.|||.|..+..|++. |.+|+|+|+|+..++.+.+.... .--..++++.++|+.+++.
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 34446789999999999999999996 78999999999999987653210 0012469999999999863
Q ss_pred C---CCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHH
Q 018194 187 E---DNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYA 261 (359)
Q Consensus 187 ~---~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (359)
. .+.||+|+-..++++++ ...+..+.+.++|+|||.+++..+.... ...+.|...+.+
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~-----------------~~~GPPf~v~~~ 180 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDK-----------------KSQTPPYSVTQA 180 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCC-----------------CCCCCCCcCCHH
Confidence 2 26899999999999997 3778999999999999999887542211 012233445678
Q ss_pred HHHHHHHhCCCeEEE
Q 018194 262 EITEIAKRVGFEVVK 276 (359)
Q Consensus 262 ~~~~~l~~aGF~~i~ 276 (359)
++.+++.. +|++..
T Consensus 181 e~~~lf~~-~~~i~~ 194 (226)
T PRK13256 181 ELIKNFSA-KIKFEL 194 (226)
T ss_pred HHHHhccC-CceEEE
Confidence 88888864 344443
No 119
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.42 E-value=2.2e-12 Score=122.27 Aligned_cols=120 Identities=21% Similarity=0.266 Sum_probs=94.7
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC--C
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF--E 187 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~ 187 (359)
...+...+.+.++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++++..|+..++.+..+|....+. +
T Consensus 227 s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 227 AQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence 3456667788899999999999999999998853 479999999999999999999998876444557777765443 4
Q ss_pred CCccceEEec------ccccccCC----------------HHHHHHHHHhccCCCCEEEEEEeee
Q 018194 188 DNHFDGAYSI------EATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYEWVT 230 (359)
Q Consensus 188 ~~~fD~v~~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 230 (359)
.++||.|++. .++.+.|+ ...+|.++.++|||||+++..+.+.
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 5789999863 34444444 3679999999999999999876444
No 120
>PHA03411 putative methyltransferase; Provisional
Probab=99.42 E-value=4.4e-12 Score=110.21 Aligned_cols=128 Identities=14% Similarity=0.159 Sum_probs=96.8
Q ss_pred CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA 199 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 199 (359)
..+.+|||+|||+|.++..++.. .+.+|+++|+|+.+++.++++. ++++++++|+.+... ..+||+|+++-.
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-~~kFDlIIsNPP 135 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-NEKFDVVISNPP 135 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-cCCCcEEEEcCC
Confidence 34569999999999999888775 3579999999999999998763 258999999988653 468999999888
Q ss_pred ccccCC--------------------HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCC
Q 018194 200 TCHAPK--------------------LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRS 259 (359)
Q Consensus 200 l~~~~~--------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (359)
+.+.+. ...++.....+|+|+|.+.+. +...+.| ..-.+
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss~~~y--------------------~~sl~ 194 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSGRPYY--------------------DGTMK 194 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eeccccc--------------------cccCC
Confidence 877531 245667778899999977664 1111111 12346
Q ss_pred HHHHHHHHHhCCCeEEE
Q 018194 260 YAEITEIAKRVGFEVVK 276 (359)
Q Consensus 260 ~~~~~~~l~~aGF~~i~ 276 (359)
+++++++|+++||....
T Consensus 195 ~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 195 SNKYLKWSKQTGLVTYA 211 (279)
T ss_pred HHHHHHHHHhcCcEecC
Confidence 78999999999998643
No 121
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=9.6e-12 Score=117.88 Aligned_cols=115 Identities=23% Similarity=0.417 Sum_probs=90.9
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCC
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FED 188 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~ 188 (359)
..+...+++.++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++++...++. ++++++|+.+.+ ++.
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhccc
Confidence 445566778899999999999999999998863 369999999999999999999988764 689999998754 345
Q ss_pred CccceEEeccc------ccccCC----------------HHHHHHHHHhccCCCCEEEEEEe
Q 018194 189 NHFDGAYSIEA------TCHAPK----------------LEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 189 ~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
++||.|++.-. +.+-++ ..++|..+.++|||||++++...
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 78999995332 111111 24789999999999999998653
No 122
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=6.4e-12 Score=119.71 Aligned_cols=114 Identities=18% Similarity=0.286 Sum_probs=90.5
Q ss_pred HHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194 113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH 190 (359)
Q Consensus 113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 190 (359)
.....+...++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++++...|+. +++++++|+.+.+ ++++
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~ 318 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQ 318 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCC
Confidence 34456677789999999999999998888742 469999999999999999999998875 7999999998765 4578
Q ss_pred cceEEecc------cccccC----------------CHHHHHHHHHhccCCCCEEEEEEe
Q 018194 191 FDGAYSIE------ATCHAP----------------KLEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 191 fD~v~~~~------~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
||+|++.- .+..-| ....+|.++.++|||||+++..+.
T Consensus 319 fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 319 PDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99999631 111111 124689999999999999998653
No 123
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.39 E-value=5.1e-12 Score=94.96 Aligned_cols=101 Identities=33% Similarity=0.461 Sum_probs=85.4
Q ss_pred EEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEecccccc-
Q 018194 125 RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF-EDNHFDGAYSIEATCH- 202 (359)
Q Consensus 125 ~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l~~- 202 (359)
+|+|+|||+|..+..+++....+++++|+++.+++.+++..... ...++.+...|+.+... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 58999999999999998855679999999999999988543332 34578999999988653 4578999999999988
Q ss_pred cCCHHHHHHHHHhccCCCCEEEEE
Q 018194 203 APKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 203 ~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..+...+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 678899999999999999999874
No 124
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.38 E-value=5.4e-12 Score=107.94 Aligned_cols=145 Identities=26% Similarity=0.397 Sum_probs=105.2
Q ss_pred cCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH-cC----------CCCCeEEEEcCCCCCCC
Q 018194 118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK-AG----------LDSLCEVVCGNFLKMPF 186 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~----------~~~~i~~~~~d~~~~~~ 186 (359)
+...++.+||..|||.|.-...|++. |.+|+|+|+|+..++.+.+.... .. -..+|++.++|+.+++.
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 56677889999999999999999996 78999999999999998543321 00 12368999999999764
Q ss_pred CC-CccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHH
Q 018194 187 ED-NHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEI 263 (359)
Q Consensus 187 ~~-~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (359)
.. ++||+|+=..+++-++ ...+..+.+.++|+|||.+++........ ...+.|...+.+++
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~----------------~~~GPPf~v~~~ev 175 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQG----------------EMEGPPFSVTEEEV 175 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CS----------------CSSSSS----HHHH
T ss_pred hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCc----------------CCCCcCCCCCHHHH
Confidence 33 5799999999998886 57899999999999999965543322110 01234445577899
Q ss_pred HHHHHhCCCeEEEEEec
Q 018194 264 TEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 264 ~~~l~~aGF~~i~~~~~ 280 (359)
.+++. .+|++...+..
T Consensus 176 ~~l~~-~~f~i~~l~~~ 191 (218)
T PF05724_consen 176 RELFG-PGFEIEELEEE 191 (218)
T ss_dssp HHHHT-TTEEEEEEEEE
T ss_pred HHHhc-CCcEEEEEecc
Confidence 99998 88999887664
No 125
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.38 E-value=3.2e-11 Score=105.93 Aligned_cols=137 Identities=22% Similarity=0.185 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcC-CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 018194 108 RLHEEMAVDLID-VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP 185 (359)
Q Consensus 108 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 185 (359)
+.+.+.++..+. ..++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.+++++...+ ++++++|+.+..
T Consensus 71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l 146 (251)
T TIGR03704 71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDAL 146 (251)
T ss_pred HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhc
Confidence 444444444443 223468999999999999999874 56799999999999999999987654 478999987632
Q ss_pred C--CCCccceEEeccccc--------------ccC--------C----HHHHHHHHHhccCCCCEEEEEEeeeCcccccC
Q 018194 186 F--EDNHFDGAYSIEATC--------------HAP--------K----LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE 237 (359)
Q Consensus 186 ~--~~~~fD~v~~~~~l~--------------~~~--------~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 237 (359)
. ..++||+|+++--.. |-+ | ...++..+.++|||||++++.. ..
T Consensus 147 ~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~-~~------- 218 (251)
T TIGR03704 147 PTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET-SE------- 218 (251)
T ss_pred chhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-Cc-------
Confidence 1 135799999875321 100 1 2467778889999999998731 10
Q ss_pred chHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEE
Q 018194 238 NKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK 276 (359)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~ 276 (359)
....++.++|++.||...-
T Consensus 219 --------------------~~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 219 --------------------RQAPLAVEAFARAGLIARV 237 (251)
T ss_pred --------------------chHHHHHHHHHHCCCCcee
Confidence 1234677888899987643
No 126
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.37 E-value=7.6e-12 Score=118.24 Aligned_cols=117 Identities=17% Similarity=0.334 Sum_probs=93.0
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCC
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FED 188 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~ 188 (359)
..+...+.+.+|.+|||+|||+|..+..++... +.+|+++|+|+.+++.+++++++.|+. ++++.++|+..++ +..
T Consensus 227 ~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~ 305 (431)
T PRK14903 227 QIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQ 305 (431)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhh
Confidence 344556678899999999999999999998853 579999999999999999999998875 6899999998765 445
Q ss_pred CccceEEecc------cccccCC----------------HHHHHHHHHhccCCCCEEEEEEee
Q 018194 189 NHFDGAYSIE------ATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYEWV 229 (359)
Q Consensus 189 ~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~ 229 (359)
++||.|++.. .+..-|+ ..++|.++.+.|||||.++....+
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 7899998632 1111121 256799999999999998876543
No 127
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.37 E-value=1.6e-11 Score=117.04 Aligned_cols=113 Identities=25% Similarity=0.330 Sum_probs=90.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CC
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FE 187 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~ 187 (359)
..+...+.+.++.+|||+|||+|..+..+++. ++.+|+++|+++.+++.+++++...|+. +++++++|+.+++ ++
T Consensus 240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~ 318 (444)
T PRK14902 240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA 318 (444)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc
Confidence 34555677788999999999999999999985 3579999999999999999999998875 5999999998753 33
Q ss_pred CCccceEEeccc------ccccCC----------------HHHHHHHHHhccCCCCEEEEE
Q 018194 188 DNHFDGAYSIEA------TCHAPK----------------LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 188 ~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~ 226 (359)
++||+|++... +.+-|+ ...+|+++.++|||||.++..
T Consensus 319 -~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 319 -EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred -ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 68999997532 111111 246899999999999999864
No 128
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3.4e-11 Score=107.09 Aligned_cols=123 Identities=28% Similarity=0.423 Sum_probs=93.6
Q ss_pred EEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc--
Q 018194 125 RILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC-- 201 (359)
Q Consensus 125 ~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~-- 201 (359)
+|||+|||+|..+..++.. +.++|+++|+|+..++.|++++...++ .++.++++|..+ +.. ++||+|+++--.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~-~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE-PLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccc-ccC-CceeEEEeCCCCCCC
Confidence 8999999999999999985 457999999999999999999999988 667777778765 223 4899999874211
Q ss_pred -----------ccC------------CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCC
Q 018194 202 -----------HAP------------KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLR 258 (359)
Q Consensus 202 -----------~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (359)
|-| -...++.++.+.|+|||.+++-. ...
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~----------------------------g~~ 241 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI----------------------------GLT 241 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE----------------------------CCC
Confidence 100 12467888889999999888731 111
Q ss_pred CHHHHHHHHHhCC-CeEEEEE
Q 018194 259 SYAEITEIAKRVG-FEVVKEK 278 (359)
Q Consensus 259 ~~~~~~~~l~~aG-F~~i~~~ 278 (359)
..+.+.+++++.| |..+...
T Consensus 242 q~~~v~~~~~~~~~~~~v~~~ 262 (280)
T COG2890 242 QGEAVKALFEDTGFFEIVETL 262 (280)
T ss_pred cHHHHHHHHHhcCCceEEEEE
Confidence 3468899999999 6655443
No 129
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.36 E-value=7.9e-11 Score=101.71 Aligned_cols=153 Identities=19% Similarity=0.255 Sum_probs=116.1
Q ss_pred CCCCEEEEECCCCChHHHHHHh-hcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C--CCCccceE
Q 018194 121 KAGDRILDVGCGVGGPMRAIAA-HSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-F--EDNHFDGA 194 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~-~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--~~~~fD~v 194 (359)
....+||||.||.|........ .+. .+|...|.|+..++..++.+++.|+.+-++|.++|+.+.. + -+-..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 4567999999999997776655 443 6999999999999999999999999877799999998842 1 13457999
Q ss_pred EecccccccCC---HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCC-CCCCCCHHHHHHHHHhC
Q 018194 195 YSIEATCHAPK---LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDA-LPGLRSYAEITEIAKRV 270 (359)
Q Consensus 195 ~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~a 270 (359)
+++..++.++| ....+..+.+.+.|||+++.. ..++.+........+.....+.. ....++..++.++.+.|
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT----gQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~a 289 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT----GQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAA 289 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc----CCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHc
Confidence 99999999987 456899999999999999973 33344444333333333222111 22467899999999999
Q ss_pred CCeEEEE
Q 018194 271 GFEVVKE 277 (359)
Q Consensus 271 GF~~i~~ 277 (359)
||+-+..
T Consensus 290 GF~K~~q 296 (311)
T PF12147_consen 290 GFEKIDQ 296 (311)
T ss_pred CCchhhh
Confidence 9996543
No 130
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.7e-11 Score=107.16 Aligned_cols=114 Identities=25% Similarity=0.373 Sum_probs=93.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 189 (359)
-+.+++.++...+.+|||+|||.|.++..+++. +..+++.+|+|...++.++++...+++.. ..+...|..+ +..+
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~-~v~~- 223 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYE-PVEG- 223 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccc-cccc-
Confidence 366777887777779999999999999999985 67899999999999999999999887653 3677777765 3333
Q ss_pred ccceEEecccccccCC-----HHHHHHHHHhccCCCCEEEEEE
Q 018194 190 HFDGAYSIEATCHAPK-----LEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+||+|+|+--+|--.+ -.+++++..+.|++||.+.++-
T Consensus 224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 9999999988875332 2389999999999999998863
No 131
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.35 E-value=4.3e-12 Score=115.02 Aligned_cols=107 Identities=25% Similarity=0.365 Sum_probs=78.2
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCCeEEEEcCCCCCC----CCC
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG---------LDSLCEVVCGNFLKMP----FED 188 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---------~~~~i~~~~~d~~~~~----~~~ 188 (359)
++.+|||+|||-|+-+.-+....-..++|+|+++..++.|++|..... ..-...|+.+|..... +++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 788999999998886666655433699999999999999999983211 1124678888887532 333
Q ss_pred --CccceEEecccccccC----CHHHHHHHHHhccCCCCEEEEEEe
Q 018194 189 --NHFDGAYSIEATCHAP----KLEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 189 --~~fD~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
..||+|-|.+++||.= ....+|+++.+.|+|||+++.+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 5999999999999963 356799999999999999998643
No 132
>PRK04457 spermidine synthase; Provisional
Probab=99.35 E-value=9.1e-12 Score=110.01 Aligned_cols=109 Identities=16% Similarity=0.139 Sum_probs=84.9
Q ss_pred CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEec
Q 018194 120 VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFEDNHFDGAYSI 197 (359)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~~ 197 (359)
..++.+|||||||+|.++..+++. ++.+++++|+++.+++.|++.+...+..++++++.+|+.+. ....++||+|++.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 345679999999999999999874 67899999999999999999876544456899999998653 2223689999975
Q ss_pred ccc-cccC---CHHHHHHHHHhccCCCCEEEEEEe
Q 018194 198 EAT-CHAP---KLEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 198 ~~l-~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
..- ...+ ....+++++.+.|+|||++++..+
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 311 1122 236999999999999999998533
No 133
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.35 E-value=1.3e-11 Score=109.44 Aligned_cols=112 Identities=17% Similarity=0.190 Sum_probs=89.1
Q ss_pred HHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccc
Q 018194 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD 192 (359)
Q Consensus 115 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 192 (359)
...+.+.++.+|||+|||+|..+..+++.. ...|+++|+++.+++.++++++..++. ++.++..|+..++...+.||
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCC
Confidence 345677889999999999999999998753 359999999999999999999998874 69999999877654456799
Q ss_pred eEEecc------cccccC----------------CHHHHHHHHHhccCCCCEEEEEE
Q 018194 193 GAYSIE------ATCHAP----------------KLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 193 ~v~~~~------~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.|++.- ++.+-| ...++|+++.++|||||+++...
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 998642 111111 12469999999999999998654
No 134
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.35 E-value=8.9e-12 Score=108.26 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=88.3
Q ss_pred hcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-----CCC
Q 018194 117 LIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-----FED 188 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-----~~~ 188 (359)
++...++.+|||+|||+|..+..++.. .+.+|+++|+++++++.|+++++..++.++++++.+|+.+. + .+.
T Consensus 63 l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 63 LVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred HHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 334456789999999999988888874 35799999999999999999999999988999999999763 1 124
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
++||+|++... -+....++..+.++|+|||.+++-.
T Consensus 143 ~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 143 PEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 68999988542 1356688999999999999988743
No 135
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.34 E-value=2e-11 Score=101.01 Aligned_cols=107 Identities=16% Similarity=0.184 Sum_probs=83.7
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF 191 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 191 (359)
+.+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++... ..+++++++|+.++++++..|
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCC
Confidence 45667778888899999999999999999987 67999999999999999988754 247999999999988777779
Q ss_pred ceEEecccccccCCHHHHHHHHHhc--cCCCCEEEE
Q 018194 192 DGAYSIEATCHAPKLEDVYAEVFRV--LKPGSLYVS 225 (359)
Q Consensus 192 D~v~~~~~l~~~~~~~~~l~~~~~~--LkpgG~l~~ 225 (359)
|.|+++...+ + ....+..+.+. +.++|.+++
T Consensus 79 d~vi~n~Py~-~--~~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 79 YKVVGNLPYN-I--STPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred CEEEECCCcc-c--HHHHHHHHHhcCCCcceEEEEE
Confidence 9999875443 2 23444444432 346777765
No 136
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.33 E-value=2.5e-11 Score=121.57 Aligned_cols=139 Identities=14% Similarity=0.124 Sum_probs=104.2
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC-CCCCccceEEeccc
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLKMP-FEDNHFDGAYSIEA 199 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~-~~~~~fD~v~~~~~ 199 (359)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...++. .+++++++|+.+.. -..++||+|++.--
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 47899999999999999999863347999999999999999999998886 58999999987631 11468999998532
Q ss_pred c-----------cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194 200 T-----------CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK 268 (359)
Q Consensus 200 l-----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (359)
- ....+...++..+.++|+|||.+++..... .+ ..-.+.++
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~-------------------------~~---~~~~~~~~ 669 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR-------------------------GF---KMDEEGLA 669 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-------------------------cC---ChhHHHHH
Confidence 1 112345678899999999999987742100 00 11267788
Q ss_pred hCCCeEEEEEecCCCCCCch
Q 018194 269 RVGFEVVKEKDLAKPPAQPW 288 (359)
Q Consensus 269 ~aGF~~i~~~~~~~~~~~~w 288 (359)
++|+.+......+.++-.|+
T Consensus 670 ~~g~~~~~i~~~~~~~Dhp~ 689 (702)
T PRK11783 670 KLGLKAEEITAKTLPPDFAR 689 (702)
T ss_pred hCCCeEEEEecCCCCCCCCC
Confidence 99999988877665554443
No 137
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.31 E-value=6.8e-11 Score=112.72 Aligned_cols=132 Identities=26% Similarity=0.353 Sum_probs=98.0
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 018194 89 GQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA 168 (359)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~ 168 (359)
+-.+.+++...........+.+.+.+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|++++...
T Consensus 264 g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~ 342 (443)
T PRK13168 264 GLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRN 342 (443)
T ss_pred CeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHc
Confidence 3344444443323334455667777888888888899999999999999999986 479999999999999999999888
Q ss_pred CCCCCeEEEEcCCCCC----CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 169 GLDSLCEVVCGNFLKM----PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 169 ~~~~~i~~~~~d~~~~----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
++. +++++++|+.+. ++.+++||+|++.-.-. .....++.+.+ ++|++.+++.
T Consensus 343 ~~~-~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 343 GLD-NVTFYHANLEEDFTDQPWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred CCC-ceEEEEeChHHhhhhhhhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEE
Confidence 764 699999998652 24456899998854321 23455665555 6898888874
No 138
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.31 E-value=2.5e-11 Score=102.34 Aligned_cols=98 Identities=22% Similarity=0.341 Sum_probs=74.8
Q ss_pred hcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C
Q 018194 117 LIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------F 186 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~ 186 (359)
...+.++.+|||+|||+|.++..+++. ...+|+++|+|+.+ .. .+++++++|+.+.+ +
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHh
Confidence 445678999999999999999988874 34589999999865 11 35789999987643 3
Q ss_pred CCCccceEEeccccc--------cc---CCHHHHHHHHHhccCCCCEEEEE
Q 018194 187 EDNHFDGAYSIEATC--------HA---PKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~--------~~---~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+.++||+|++..+.+ |. .+...+++++.++|+|||++++.
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 567899999865321 11 12368999999999999999984
No 139
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.30 E-value=2.8e-11 Score=105.14 Aligned_cols=152 Identities=24% Similarity=0.276 Sum_probs=102.8
Q ss_pred cchhhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCC
Q 018194 67 EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRA 146 (359)
Q Consensus 67 ~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 146 (359)
....+.|+.||+...+.=......+-.+ .++... .++..++-..-.+++..++|+|||-|+-+.-+-+..-.
T Consensus 70 ~~~~~~Va~HYN~~~e~g~e~Rq~S~Ii-------~lRnfN-NwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~ 141 (389)
T KOG1975|consen 70 ESKSSEVAEHYNERTEVGREKRQRSPII-------FLRNFN-NWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIG 141 (389)
T ss_pred cchhHHHHHHHHHHHHHhHhhhccCcee-------ehhhhh-HHHHHHHHHHHhccccccceeccCCcccHhHhhhhccc
Confidence 3447789999998765432222111111 122222 22222222223457889999999999877666554335
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC-----CCeEEEEcCCCCC------CCCCCccceEEeccccccc-C---CHHHHHH
Q 018194 147 NVVGITINEYQVNRARLHNKKAGLD-----SLCEVVCGNFLKM------PFEDNHFDGAYSIEATCHA-P---KLEDVYA 211 (359)
Q Consensus 147 ~v~g~D~s~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~------~~~~~~fD~v~~~~~l~~~-~---~~~~~l~ 211 (359)
+++|+||++..++.|+++.....-. -.+.|+.+|.... ++++.+||+|-|.+++|+. . ....+|+
T Consensus 142 ~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~ 221 (389)
T KOG1975|consen 142 EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALR 221 (389)
T ss_pred ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHH
Confidence 9999999999999999987643211 1368889998752 3455569999999999985 2 4668999
Q ss_pred HHHhccCCCCEEEEE
Q 018194 212 EVFRVLKPGSLYVSY 226 (359)
Q Consensus 212 ~~~~~LkpgG~l~~~ 226 (359)
++.++|||||+++-.
T Consensus 222 Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 222 NVAKCLKPGGVFIGT 236 (389)
T ss_pred HHHhhcCCCcEEEEe
Confidence 999999999999864
No 140
>PRK00811 spermidine synthase; Provisional
Probab=99.30 E-value=2.4e-11 Score=108.71 Aligned_cols=105 Identities=25% Similarity=0.371 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcC--C--CCCeEEEEcCCCCC-CCCCCccceE
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAG--L--DSLCEVVCGNFLKM-PFEDNHFDGA 194 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~--~--~~~i~~~~~d~~~~-~~~~~~fD~v 194 (359)
+.+.+||+||||+|..++.++++++ .+|+++|+++.+++.|++.+...+ . .++++++.+|+... ....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3567999999999999999988744 599999999999999999876532 1 46899999998763 2345789999
Q ss_pred EecccccccCC----HHHHHHHHHhccCCCCEEEE
Q 018194 195 YSIEATCHAPK----LEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 195 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~ 225 (359)
++...-.+.+. ..++++.+.+.|+|||.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 98654332222 36789999999999999886
No 141
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.29 E-value=3.3e-11 Score=99.46 Aligned_cols=125 Identities=20% Similarity=0.303 Sum_probs=82.6
Q ss_pred HHHHHhcCC-CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194 112 EMAVDLIDV-KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH 190 (359)
Q Consensus 112 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 190 (359)
+.+++.+.. +++..|-|+|||.+.++..+.. +.+|+.+|+-+. |-.+..+|+...|+++++
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~----------------n~~Vtacdia~vPL~~~s 122 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAP----------------NPRVTACDIANVPLEDES 122 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S----------------STTEEES-TTS-S--TT-
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccCC----------------CCCEEEecCccCcCCCCc
Confidence 445555543 3457999999999999866543 358999998531 235788999999999999
Q ss_pred cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194 191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV 270 (359)
Q Consensus 191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 270 (359)
.|+++++.+|.. .|+..++.|+.|+|||||.+.|.|.... +.+.+.+.+.++..
T Consensus 123 vDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR-------------------------f~~~~~F~~~~~~~ 176 (219)
T PF05148_consen 123 VDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR-------------------------FENVKQFIKALKKL 176 (219)
T ss_dssp EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG--------------------------S-HHHHHHHHHCT
T ss_pred eeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc-------------------------CcCHHHHHHHHHHC
Confidence 999999888765 4899999999999999999999875432 22557888999999
Q ss_pred CCeEEEEEec
Q 018194 271 GFEVVKEKDL 280 (359)
Q Consensus 271 GF~~i~~~~~ 280 (359)
||+......-
T Consensus 177 GF~~~~~d~~ 186 (219)
T PF05148_consen 177 GFKLKSKDES 186 (219)
T ss_dssp TEEEEEEE--
T ss_pred CCeEEecccC
Confidence 9999886543
No 142
>PRK03612 spermidine synthase; Provisional
Probab=99.28 E-value=3.2e-11 Score=116.74 Aligned_cols=106 Identities=21% Similarity=0.204 Sum_probs=82.1
Q ss_pred CCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHH--HHHc---CC-CCCeEEEEcCCCCC-CCCCCccc
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLH--NKKA---GL-DSLCEVVCGNFLKM-PFEDNHFD 192 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~--~~~~---~~-~~~i~~~~~d~~~~-~~~~~~fD 192 (359)
+++.+|||||||+|..++.+++++. .+|+++|+++++++.++++ .... .. .++++++.+|+.+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999998765 6999999999999999983 2221 11 35799999998873 22347899
Q ss_pred eEEecccccccCC-----HHHHHHHHHhccCCCCEEEEE
Q 018194 193 GAYSIEATCHAPK-----LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 193 ~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+|++...-...+. ..++++.+++.|||||.+++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 9999754333222 246899999999999999874
No 143
>PRK01581 speE spermidine synthase; Validated
Probab=99.25 E-value=8e-11 Score=106.31 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=97.3
Q ss_pred CCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHH--H---HcC-CCCCeEEEEcCCCCC-CCCCCccc
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHN--K---KAG-LDSLCEVVCGNFLKM-PFEDNHFD 192 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~--~---~~~-~~~~i~~~~~d~~~~-~~~~~~fD 192 (359)
..+.+||+||||+|..++.+.+++ ..+|+++|+++.+++.|++.. . ... -.++++++.+|+.+. ....++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 345699999999999999998864 369999999999999999621 1 111 146899999999873 33456899
Q ss_pred eEEecccccc---cC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194 193 GAYSIEATCH---AP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA 267 (359)
Q Consensus 193 ~v~~~~~l~~---~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (359)
+|++...-.. .. --.++++.+++.|+|||.+++..- .+ ...... ...+.+.|
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~--sp------~~~~~~---------------~~~i~~tL 285 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN--SP------ADAPLV---------------YWSIGNTI 285 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC--Ch------hhhHHH---------------HHHHHHHH
Confidence 9998742110 11 125789999999999999887411 00 000000 12367889
Q ss_pred HhCCCeEEEEEecCC
Q 018194 268 KRVGFEVVKEKDLAK 282 (359)
Q Consensus 268 ~~aGF~~i~~~~~~~ 282 (359)
+++||.+.....+..
T Consensus 286 ~~af~~v~~y~t~vP 300 (374)
T PRK01581 286 EHAGLTVKSYHTIVP 300 (374)
T ss_pred HHhCCceEEEEEecC
Confidence 999999887776633
No 144
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.23 E-value=1.8e-10 Score=107.29 Aligned_cols=105 Identities=19% Similarity=0.280 Sum_probs=82.4
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC--C--CCCccceEEe
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLKMP--F--EDNHFDGAYS 196 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~--~~~~fD~v~~ 196 (359)
++.+|||+|||+|.++...+.....+|+++|+|+.+++.|++++..+++. .+++++++|+.+.. + ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 57899999999999988766543359999999999999999999998885 47999999997742 1 2468999998
Q ss_pred ccccccc---------CCHHHHHHHHHhccCCCCEEEEE
Q 018194 197 IEATCHA---------PKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 197 ~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.-....- .+...++..+.++|+|||.++.+
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 7432111 12445666788999999999875
No 145
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.23 E-value=6.8e-11 Score=99.88 Aligned_cols=116 Identities=22% Similarity=0.305 Sum_probs=94.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCC--C
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVC-GNFLKMP--F 186 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~--~ 186 (359)
..+..++...++.+|||||++.|..+..||.. + +.+++.+|+++++.+.|++++++.|+.++|..+. +|+.+.- .
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 34444445567889999999999999999984 3 5799999999999999999999999998899999 5776632 3
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT 230 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 230 (359)
..++||+|+.-.. -.+...++..+.++|+|||.+++-....
T Consensus 129 ~~~~fDliFIDad---K~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 129 LDGSFDLVFIDAD---KADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred cCCCccEEEEeCC---hhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 4689999998653 2367899999999999999999854433
No 146
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.23 E-value=6.7e-11 Score=99.63 Aligned_cols=101 Identities=27% Similarity=0.374 Sum_probs=81.5
Q ss_pred EEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C--CCCCccceEEecccc
Q 018194 125 RILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P--FEDNHFDGAYSIEAT 200 (359)
Q Consensus 125 ~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~fD~v~~~~~l 200 (359)
.+||||||.|.++..+|. +++..++|+|++...+..+.+++...+++ |+.++++|+... + ++++++|.|+.++.=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 899999999999999998 58899999999999999999999998874 899999999873 2 567899999987754
Q ss_pred cccCC--------HHHHHHHHHhccCCCCEEEEE
Q 018194 201 CHAPK--------LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 201 ~~~~~--------~~~~l~~~~~~LkpgG~l~~~ 226 (359)
-|... ...++..+.++|+|||.|.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 43321 258999999999999999874
No 147
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.23 E-value=3.5e-10 Score=103.05 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194 105 DATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM 184 (359)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 184 (359)
...+.+.+.+.+++...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..++ .+++|+++|+.++
T Consensus 156 ~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~ 233 (315)
T PRK03522 156 AVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQF 233 (315)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHH
Confidence 344455555556655445689999999999999999985 57999999999999999999998887 5799999999875
Q ss_pred CC-CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 185 PF-EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 185 ~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.. ..+.||+|++.-.-. .....+.+....++|++.+++.
T Consensus 234 ~~~~~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 234 ATAQGEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred HHhcCCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEEE
Confidence 32 235799999874311 1122232333446787777663
No 148
>PLN02476 O-methyltransferase
Probab=99.20 E-value=2.2e-10 Score=100.75 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=88.9
Q ss_pred hcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C----CC
Q 018194 117 LIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-F----ED 188 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~----~~ 188 (359)
++...++.+|||||+++|..+..++.. .+.+|+.+|.+++..+.|++.+++.|+.++|+++.+|+.+. + + ..
T Consensus 113 L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 113 LVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred HHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccC
Confidence 334455789999999999999999874 35689999999999999999999999998999999999763 2 1 13
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
++||+|+.... -.+....+..+.++|+|||.+++-
T Consensus 193 ~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 193 SSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 68999998653 235678899999999999998874
No 149
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.19 E-value=7e-10 Score=105.65 Aligned_cols=117 Identities=19% Similarity=0.296 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 018194 104 RDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK 183 (359)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 183 (359)
....+.+.+.+.+.+.+.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++...++ .+++++.+|+.+
T Consensus 274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~ 351 (431)
T TIGR00479 274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLET 351 (431)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHH
Confidence 4445556666777777778889999999999999999986 46999999999999999999988876 489999999875
Q ss_pred C----CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194 184 M----PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 184 ~----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
. ++.+++||+|++.-.=. .-...+++.+.+ ++|++.+++
T Consensus 352 ~l~~~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 352 VLPKQPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred HHHHHHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEE
Confidence 2 23346799998754311 113566666554 889887766
No 150
>PLN02366 spermidine synthase
Probab=99.19 E-value=2.2e-10 Score=102.99 Aligned_cols=105 Identities=20% Similarity=0.325 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCCC--CCCCccceE
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAG--L-DSLCEVVCGNFLKMP--FEDNHFDGA 194 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~--~~~~~fD~v 194 (359)
+.+.+||+||||.|..++.++++++ .+|+.+|+++.+++.+++.+...+ + .++++++.+|+...- .+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4568999999999999999999765 589999999999999999876532 2 358999999975531 235689999
Q ss_pred EecccccccCC----HHHHHHHHHhccCCCCEEEE
Q 018194 195 YSIEATCHAPK----LEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 195 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~ 225 (359)
++...-.+.+. ...+++.+++.|+|||.++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 98654332221 35789999999999999976
No 151
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.18 E-value=5.1e-10 Score=93.64 Aligned_cols=148 Identities=18% Similarity=0.259 Sum_probs=95.7
Q ss_pred CCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcC------------------------------
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAG------------------------------ 169 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~------------------------------ 169 (359)
..+..+|||||..|.++..+++..+ ..|.|+||++..++.|+++++..-
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3567899999999999999999655 489999999999999998864321
Q ss_pred ----CCCCeE-------EEEcCCCCCCCCCCccceEEecccccccC------CHHHHHHHHHhccCCCCEEEEEEeeeCc
Q 018194 170 ----LDSLCE-------VVCGNFLKMPFEDNHFDGAYSIEATCHAP------KLEDVYAEVFRVLKPGSLYVSYEWVTTD 232 (359)
Q Consensus 170 ----~~~~i~-------~~~~d~~~~~~~~~~fD~v~~~~~l~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 232 (359)
.++++. +...|+. .+....||+|+|..+..++. -...++++++++|.|||++++ -+.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv----EPQ 210 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV----EPQ 210 (288)
T ss_pred ccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE----cCC
Confidence 011111 1122222 12346899999987765542 277999999999999999997 222
Q ss_pred ccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC--CCeEEE
Q 018194 233 KYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV--GFEVVK 276 (359)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--GF~~i~ 276 (359)
.|........ .......+...-...++....+|-+. ||+-++
T Consensus 211 pWksY~kaar--~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 211 PWKSYKKAAR--RSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred chHHHHHHHH--HHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 2222211111 11112223333456778888888766 555443
No 152
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.17 E-value=8.7e-11 Score=99.36 Aligned_cols=117 Identities=25% Similarity=0.359 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 018194 105 DATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL 182 (359)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 182 (359)
.....+...+++.. ...+||||||++|..+..+++. .+++|+.+|++++..+.|++.+.+.|+.++|+++.+|+.
T Consensus 31 ~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 31 PETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred HHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence 33444444455444 4569999999999999999984 357999999999999999999999999889999999997
Q ss_pred CC-C-----CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 183 KM-P-----FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 183 ~~-~-----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+. + -+.++||+|+.... -.+....+..+.++|+|||.+++-.
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDAD---KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEEST---GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred hhHHHHHhccCCCceeEEEEccc---ccchhhHHHHHhhhccCCeEEEEcc
Confidence 62 1 11358999998763 2357788899999999999999843
No 153
>PLN02672 methionine S-methyltransferase
Probab=99.17 E-value=1.1e-09 Score=112.03 Aligned_cols=103 Identities=21% Similarity=0.226 Sum_probs=79.3
Q ss_pred CCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCC---------------CCCeEEEEcCCCCCCC
Q 018194 123 GDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGL---------------DSLCEVVCGNFLKMPF 186 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~---------------~~~i~~~~~d~~~~~~ 186 (359)
+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..+++ .++++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 469999999999999999885 457999999999999999999887543 2479999999976431
Q ss_pred C-CCccceEEecccc--------------ccc--------------------CC----HHHHHHHHHhccCCCCEEEE
Q 018194 187 E-DNHFDGAYSIEAT--------------CHA--------------------PK----LEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 187 ~-~~~fD~v~~~~~l--------------~~~--------------------~~----~~~~l~~~~~~LkpgG~l~~ 225 (359)
. ...||+|+++-.- .|- +| ...++.++.++|+|||++++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 1 1369999986321 010 11 25677888889999998886
No 154
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.17 E-value=4.8e-10 Score=99.85 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCC---CCCeEEEEcCCCCC-CCCCCccceEEe
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGL---DSLCEVVCGNFLKM-PFEDNHFDGAYS 196 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~-~~~~~~fD~v~~ 196 (359)
.+.+||+||||+|..+..++++. ..+++++|+++.+++.+++.+...+. .++++++.+|.... ....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34599999999999999988864 46899999999999999998755321 24688888887552 122478999998
Q ss_pred cccccccC--C--HHHHHHHHHhccCCCCEEEEE
Q 018194 197 IEATCHAP--K--LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 197 ~~~l~~~~--~--~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.......+ + ..++++.+.+.|+|||.+++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 65422222 2 468899999999999999874
No 155
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.17 E-value=6.7e-10 Score=93.76 Aligned_cols=122 Identities=22% Similarity=0.288 Sum_probs=93.5
Q ss_pred HHHHhcCC-CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194 113 MAVDLIDV-KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF 191 (359)
Q Consensus 113 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 191 (359)
.+++.+.. .....|-|+|||.+.++. . -.-.|+.+|+-+ .+-+++.+|+.+.|+++++.
T Consensus 170 ~ii~~ik~r~~~~vIaD~GCGEakiA~---~-~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~sv 229 (325)
T KOG3045|consen 170 VIIRKIKRRPKNIVIADFGCGEAKIAS---S-ERHKVHSFDLVA----------------VNERVIACDMRNVPLEDESV 229 (325)
T ss_pred HHHHHHHhCcCceEEEecccchhhhhh---c-cccceeeeeeec----------------CCCceeeccccCCcCccCcc
Confidence 34444433 345689999999987765 2 234899999842 24578899999999999999
Q ss_pred ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194 192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG 271 (359)
Q Consensus 192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 271 (359)
|+++++.+|.- .|+..++.++.|+|||||.+.|.|... .+.+...+.+.|...|
T Consensus 230 DvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S-------------------------Rf~dv~~f~r~l~~lG 283 (325)
T KOG3045|consen 230 DVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS-------------------------RFSDVKGFVRALTKLG 283 (325)
T ss_pred cEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh-------------------------hcccHHHHHHHHHHcC
Confidence 99998887764 589999999999999999999976322 3345667889999999
Q ss_pred CeEEEEEec
Q 018194 272 FEVVKEKDL 280 (359)
Q Consensus 272 F~~i~~~~~ 280 (359)
|.+......
T Consensus 284 F~~~~~d~~ 292 (325)
T KOG3045|consen 284 FDVKHKDVS 292 (325)
T ss_pred Ceeeehhhh
Confidence 998776543
No 156
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.17 E-value=4.3e-09 Score=94.80 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=99.1
Q ss_pred CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEE-cCCCCCC----CCCCccceE
Q 018194 122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKA-GLDSLCEVVC-GNFLKMP----FEDNHFDGA 194 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~~----~~~~~fD~v 194 (359)
.+.++||||||+|.+...++. .++.+++|+|+++.+++.|+++++.. ++..+|++.. .|..++. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 467999999999988877765 46789999999999999999999998 7888888864 3332221 245789999
Q ss_pred EecccccccCCH-----HHHHHHH----------------HhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhh-cCC
Q 018194 195 YSIEATCHAPKL-----EDVYAEV----------------FRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIE-RGD 252 (359)
Q Consensus 195 ~~~~~l~~~~~~-----~~~l~~~----------------~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 252 (359)
+|+--++.-.+. ..-.+++ .+++.+||.+.++.-... .......... .-.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~--------eS~~~~~~~gwfts 265 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIE--------ESKAFAKQVLWFTS 265 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhH--------HHHHHHhhCcEEEE
Confidence 998765532211 1112222 234456666554321111 1111111100 001
Q ss_pred CCCCCCCHHHHHHHHHhCCCeEEEEEecCCCC
Q 018194 253 ALPGLRSYAEITEIAKRVGFEVVKEKDLAKPP 284 (359)
Q Consensus 253 ~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~ 284 (359)
....-.+...+.+.|++.|...+.+..+.+..
T Consensus 266 mv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~ 297 (321)
T PRK11727 266 LVSKKENLPPLYRALKKVGAVEVKTIEMAQGQ 297 (321)
T ss_pred EeeccCCHHHHHHHHHHcCCceEEEEEEeCCC
Confidence 12233478899999999999888777775544
No 157
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.15 E-value=5.1e-10 Score=94.33 Aligned_cols=117 Identities=14% Similarity=0.018 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcC-CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C
Q 018194 108 RLHEEMAVDLID-VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P 185 (359)
Q Consensus 108 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~ 185 (359)
....+.++..+. ..++.+|||+|||+|.++..++.....+|+++|+++..++.++++++..++. +++++++|+.+. +
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~ 116 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLA 116 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHh
Confidence 344444444442 2457899999999999998654433469999999999999999999888764 799999998763 2
Q ss_pred CCCCccceEEecccccccCCHHHHHHHHHh--ccCCCCEEEEE
Q 018194 186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFR--VLKPGSLYVSY 226 (359)
Q Consensus 186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~--~LkpgG~l~~~ 226 (359)
....+||+|++.-... -.-...+++.+.. +|+|+|.+++.
T Consensus 117 ~~~~~fDlV~~DPPy~-~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 117 QPGTPHNVVFVDPPFR-KGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred hcCCCceEEEECCCCC-CChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 2235799999976532 1224455565554 47898887763
No 158
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.13 E-value=1.4e-10 Score=102.84 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=89.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF 191 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 191 (359)
..+.+.-.+-.+..|||+|||||.++...|+....+|+++|.|.-+ +.|++.+..+++.+.|+++++.+++..+|.++.
T Consensus 50 ~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKV 128 (346)
T KOG1499|consen 50 NAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKV 128 (346)
T ss_pred HHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccce
Confidence 3344444455789999999999999999999766799999987655 999999999999988999999999987778899
Q ss_pred ceEEeccccccc---CCHHHHHHHHHhccCCCCEEE
Q 018194 192 DGAYSIEATCHA---PKLEDVYAEVFRVLKPGSLYV 224 (359)
Q Consensus 192 D~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~ 224 (359)
|+|++-++-+.+ .-...+|-.=-+.|+|||.++
T Consensus 129 DiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 129 DIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred eEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 999997754433 124455555558899999986
No 159
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.13 E-value=7e-10 Score=91.87 Aligned_cols=107 Identities=25% Similarity=0.277 Sum_probs=75.9
Q ss_pred CCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCC----CCCCcc
Q 018194 119 DVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAG--LDSLCEVVCGNFLKMP----FEDNHF 191 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~----~~~~~f 191 (359)
...++.+|||+|||+|..+..++.. ...+|+..|.++ .++..+.+++..+ ...++.+...|..+.. ....+|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3456789999999999999999886 567999999998 8898988887765 4567888888876521 344689
Q ss_pred ceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
|+|++..+++.-...+.+++.+.++|+|+|.+++.
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999998778899999999999999996664
No 160
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.13 E-value=1.2e-09 Score=97.54 Aligned_cols=116 Identities=27% Similarity=0.362 Sum_probs=95.2
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCCCCC
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-NFLKMPFE 187 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~ 187 (359)
...+.+.++..+++|..|||-=||||.+..+..- .|++++|.|++..|++-++.+.+..++.+ ..+... |+..+|++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~ 261 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCC
Confidence 4456677788899999999999999999988766 58999999999999999999999888654 444444 99999999
Q ss_pred CCccceEEeccccccc-----CC----HHHHHHHHHhccCCCCEEEEE
Q 018194 188 DNHFDGAYSIEATCHA-----PK----LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~-----~~----~~~~l~~~~~~LkpgG~l~~~ 226 (359)
++++|.|++---..-. .. ..++|+.+.++||+||++++.
T Consensus 262 ~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 262 DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 8899999985432211 11 568999999999999999984
No 161
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.12 E-value=1.6e-10 Score=96.13 Aligned_cols=143 Identities=27% Similarity=0.428 Sum_probs=102.0
Q ss_pred hcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcCCCCC--CCCCCccce
Q 018194 117 LIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL-DSLCEVVCGNFLKM--PFEDNHFDG 193 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~--~~~~~~fD~ 193 (359)
.+..+.|.+|||.+.|-|..++..++....+|+.++.+|..++.|+-+-=..++ ..+|+++.+|+.+. .|++++||+
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDa 208 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDA 208 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccce
Confidence 345667999999999999999998886334999999999999887654222221 23689999999874 488999999
Q ss_pred EEeccc-ccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194 194 AYSIEA-TCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV 270 (359)
Q Consensus 194 v~~~~~-l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 270 (359)
|+-.-. +.+.. --.+++++++|+|||||+++-+.-.+...+. ..--+..+.+.|+++
T Consensus 209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr--------------------G~d~~~gVa~RLr~v 268 (287)
T COG2521 209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR--------------------GLDLPKGVAERLRRV 268 (287)
T ss_pred EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc--------------------cCChhHHHHHHHHhc
Confidence 974221 11111 2468999999999999999865322221111 111346888999999
Q ss_pred CCeEEEEEe
Q 018194 271 GFEVVKEKD 279 (359)
Q Consensus 271 GF~~i~~~~ 279 (359)
||++++...
T Consensus 269 GF~~v~~~~ 277 (287)
T COG2521 269 GFEVVKKVR 277 (287)
T ss_pred Cceeeeeeh
Confidence 999887543
No 162
>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process
Probab=99.12 E-value=1.6e-10 Score=77.50 Aligned_cols=63 Identities=49% Similarity=0.784 Sum_probs=59.7
Q ss_pred hhccchhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCccccccceeeEEEecCC
Q 018194 292 LKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPH 354 (359)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~arKP~ 354 (359)
++...+++|+.+.+...+|.++++|++..++.+.|....+.+.++|+.++|+|||++++|||+
T Consensus 5 ~r~t~~Gr~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPMyl~v~RKP~ 67 (67)
T PF08498_consen 5 FRMTWLGRFITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPMYLFVARKPE 67 (67)
T ss_pred EeccHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCchhheeeccCC
Confidence 356778899999999999999999999999999999999999999999999999999999996
No 163
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.08 E-value=7.4e-10 Score=96.24 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=86.2
Q ss_pred CCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C-C----CCc
Q 018194 120 VKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-F-E----DNH 190 (359)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-~----~~~ 190 (359)
..+..+|||||+++|..+..++.. .+.+|+.+|.+++..+.|++.+++.|+.++|+++.+|+.+. + + + .++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 334579999999999999999874 45799999999999999999999999999999999998773 2 1 1 268
Q ss_pred cceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194 191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
||+|+...- -.+....+..+.++|+|||.+++
T Consensus 157 fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 157 FDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred ccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEE
Confidence 999998653 22466788888999999999887
No 164
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.07 E-value=1.1e-09 Score=96.82 Aligned_cols=87 Identities=20% Similarity=0.254 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE 187 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 187 (359)
....+.+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+.+++++
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch
Confidence 345667777788888999999999999999999997 56999999999999999987754 24799999999987754
Q ss_pred CCccceEEecccc
Q 018194 188 DNHFDGAYSIEAT 200 (359)
Q Consensus 188 ~~~fD~v~~~~~l 200 (359)
.||.|+++...
T Consensus 91 --~~d~Vv~NlPy 101 (258)
T PRK14896 91 --EFNKVVSNLPY 101 (258)
T ss_pred --hceEEEEcCCc
Confidence 48999887654
No 165
>PHA03412 putative methyltransferase; Provisional
Probab=99.07 E-value=7.5e-10 Score=94.20 Aligned_cols=93 Identities=17% Similarity=0.217 Sum_probs=73.2
Q ss_pred CCEEEEECCCCChHHHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194 123 GDRILDVGCGVGGPMRAIAAH----SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE 198 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~ 198 (359)
+.+|||+|||+|.++..+++. ...+|+++|+++.+++.|+++. .++.++++|+...++ +++||+|+++-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~-~~~FDlIIsNP 122 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEF-DTLFDMAISNP 122 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccc-cCCccEEEECC
Confidence 679999999999999988864 2469999999999999999764 247899999987654 46899999986
Q ss_pred cccccC--C----------HHHHHHHHHhccCCCCE
Q 018194 199 ATCHAP--K----------LEDVYAEVFRVLKPGSL 222 (359)
Q Consensus 199 ~l~~~~--~----------~~~~l~~~~~~LkpgG~ 222 (359)
-..-.. + ...++..+.++++||+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 554221 1 34688888887777664
No 166
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.07 E-value=4.6e-09 Score=93.49 Aligned_cols=147 Identities=19% Similarity=0.255 Sum_probs=107.5
Q ss_pred CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccccc
Q 018194 124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA 203 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 203 (359)
...+|+|.|.|..+..+.... .+|-+++++...+-.+..... .| |+.+.+|...- .|.+ |+|++.+++||+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~~--daI~mkWiLhdw 249 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPKG--DAIWMKWILHDW 249 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCCc--CeEEEEeecccC
Confidence 789999999999999998853 368888988887776665543 22 78889998875 5544 799999999999
Q ss_pred CC--HHHHHHHHHhccCCCCEEEEEEeeeCc--ccc---cCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEE
Q 018194 204 PK--LEDVYAEVFRVLKPGSLYVSYEWVTTD--KYE---AENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK 276 (359)
Q Consensus 204 ~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~ 276 (359)
+| ..++|++++..|+|||.+++.|...+. ..+ .................+ .-++..+++.++.++||.+.+
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~G--kert~~e~q~l~~~~gF~~~~ 327 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGG--KERTLKEFQALLPEEGFPVCM 327 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccc--eeccHHHHHhcchhhcCceeE
Confidence 85 679999999999999999999975543 111 111112222222222222 235789999999999999988
Q ss_pred EEecC
Q 018194 277 EKDLA 281 (359)
Q Consensus 277 ~~~~~ 281 (359)
.....
T Consensus 328 ~~~~~ 332 (342)
T KOG3178|consen 328 VALTA 332 (342)
T ss_pred EEecc
Confidence 76543
No 167
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.06 E-value=1.8e-09 Score=92.50 Aligned_cols=102 Identities=25% Similarity=0.346 Sum_probs=87.7
Q ss_pred CEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEeccc
Q 018194 124 DRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAYSIEA 199 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~ 199 (359)
..+||||||.|.+...+|+ .|...++|||+....+..+.+++.+.+++ |+.+++.|+..+- +++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5899999999999999998 58899999999999999999999999986 8999999998742 45569999999875
Q ss_pred ccccCC--------HHHHHHHHHhccCCCCEEEEE
Q 018194 200 TCHAPK--------LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 200 l~~~~~--------~~~~l~~~~~~LkpgG~l~~~ 226 (359)
=-|... ...+++.+.++|+|||.|.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 444321 358999999999999999884
No 168
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=2.3e-09 Score=86.94 Aligned_cols=136 Identities=17% Similarity=0.189 Sum_probs=94.6
Q ss_pred cCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEec
Q 018194 118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSI 197 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~ 197 (359)
...-.|..|+|+|||||.++...+-....+|+|+|+++++++.+++++.+ +..++.|+.+|+.+. ...+|.|+++
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhc---CCccceEEEC
Confidence 34446789999999999999988776457999999999999999999988 346799999999886 3678988887
Q ss_pred cccccc---CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeE
Q 018194 198 EATCHA---PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEV 274 (359)
Q Consensus 198 ~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 274 (359)
--+.-. .|.. ++....+.. -.++-. ...-+.+.+.+..+++|+++
T Consensus 116 PPFG~~~rhaDr~-Fl~~Ale~s---~vVYsi----------------------------H~a~~~~f~~~~~~~~G~~v 163 (198)
T COG2263 116 PPFGSQRRHADRP-FLLKALEIS---DVVYSI----------------------------HKAGSRDFVEKFAADLGGTV 163 (198)
T ss_pred CCCccccccCCHH-HHHHHHHhh---heEEEe----------------------------eccccHHHHHHHHHhcCCeE
Confidence 655432 2433 334444332 111110 01124577888999999988
Q ss_pred EEEE--ecCCCCCCchhh
Q 018194 275 VKEK--DLAKPPAQPWWT 290 (359)
Q Consensus 275 i~~~--~~~~~~~~~w~~ 290 (359)
.... .+..+...+|..
T Consensus 164 ~~~~~~~~~iP~~y~fH~ 181 (198)
T COG2263 164 THIERARFPIPRTYPFHR 181 (198)
T ss_pred EEEEEEEEecCccCchhh
Confidence 7654 443444455554
No 169
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.05 E-value=1.4e-09 Score=91.27 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=69.9
Q ss_pred CCCEEEEECCCCCh----HHHHHHhh----c--CCEEEEEeCCHHHHHHHHHHH--------------HH-----cC---
Q 018194 122 AGDRILDVGCGVGG----PMRAIAAH----S--RANVVGITINEYQVNRARLHN--------------KK-----AG--- 169 (359)
Q Consensus 122 ~~~~vLDiGcG~G~----~~~~l~~~----~--~~~v~g~D~s~~~~~~a~~~~--------------~~-----~~--- 169 (359)
+..+|+..||++|. ++..+.+. . ..+|+|+|+|+.+++.|++-. .+ .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 55799999999997 22233331 1 369999999999999998631 00 00
Q ss_pred -----CCCCeEEEEcCCCCCCCCCCccceEEecccccccCC--HHHHHHHHHhccCCCCEEEEE
Q 018194 170 -----LDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 170 -----~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+..+|.|.+.|+.+.+.+.+.||+|+|++++.++.. ...+++.+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 124799999999984445689999999999999964 679999999999999999983
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.03 E-value=1.6e-09 Score=96.90 Aligned_cols=90 Identities=24% Similarity=0.307 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE 187 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 187 (359)
....+.+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++++|+.+.++
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~- 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF- 99 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-
Confidence 345567777888889999999999999999999886 468999999999999999998876655689999999988654
Q ss_pred CCccceEEecccc
Q 018194 188 DNHFDGAYSIEAT 200 (359)
Q Consensus 188 ~~~fD~v~~~~~l 200 (359)
..||.|+++...
T Consensus 100 -~~~d~VvaNlPY 111 (294)
T PTZ00338 100 -PYFDVCVANVPY 111 (294)
T ss_pred -cccCEEEecCCc
Confidence 368998876543
No 171
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.03 E-value=1.1e-08 Score=80.92 Aligned_cols=145 Identities=14% Similarity=0.204 Sum_probs=110.3
Q ss_pred HHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEE
Q 018194 73 VDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVG 150 (359)
Q Consensus 73 v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g 150 (359)
++.-++..-.|+..+.......+.-.|.. ....+.+...++...|..|||+|.|||.++..+.++ ....++.
T Consensus 5 ~~~~f~~e~~F~k~wi~~PrtVGaI~PsS------s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~ 78 (194)
T COG3963 5 LARKFDEEISFFKGWIDNPRTVGAILPSS------SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTA 78 (194)
T ss_pred hhhhHHHHHHHHHHHhcCCceeeeecCCc------HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEE
Confidence 34455555566666555444444333333 334566777888889999999999999999999875 3469999
Q ss_pred EeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEE
Q 018194 151 ITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLY 223 (359)
Q Consensus 151 ~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l 223 (359)
++.|++.+....++.. .+.++.+|+.++. +++..||.|+|..-+-.+| -..+.|+.+...|.+||.+
T Consensus 79 iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~l 152 (194)
T COG3963 79 IEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPL 152 (194)
T ss_pred EEeCHHHHHHHHHhCC------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeE
Confidence 9999999998887753 4679999998865 5567899999988877776 3568999999999999999
Q ss_pred EEEEee
Q 018194 224 VSYEWV 229 (359)
Q Consensus 224 ~~~~~~ 229 (359)
+...+.
T Consensus 153 vqftYg 158 (194)
T COG3963 153 VQFTYG 158 (194)
T ss_pred EEEEec
Confidence 976544
No 172
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.03 E-value=4.5e-09 Score=97.85 Aligned_cols=131 Identities=15% Similarity=0.087 Sum_probs=95.3
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 018194 91 SFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL 170 (359)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~ 170 (359)
.+.+++...........+.+...+...+...++.+|||++||+|.++..++.. +.+|+|+|+++.+++.|+++++..++
T Consensus 202 ~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~ 280 (374)
T TIGR02085 202 PLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGL 280 (374)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 45566554445555555666666666655445679999999999999999975 57999999999999999999988887
Q ss_pred CCCeEEEEcCCCCCCC-CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 171 DSLCEVVCGNFLKMPF-EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 171 ~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
. ++++..+|+.+... ..++||+|++.-.-. .-...+++.+. .++|++.+++.
T Consensus 281 ~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~--G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 281 D-NLSFAALDSAKFATAQMSAPELVLVNPPRR--GIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred C-cEEEEECCHHHHHHhcCCCCCEEEECCCCC--CCcHHHHHHHH-hcCCCeEEEEE
Confidence 4 89999999976421 124699998864321 11345555554 47999888874
No 173
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.02 E-value=4.9e-09 Score=87.22 Aligned_cols=116 Identities=22% Similarity=0.340 Sum_probs=85.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCE---------EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRAN---------VVGITINEYQVNRARLHNKKAGLDSLCEVVC 178 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~---------v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~ 178 (359)
.....++.+...+++..|||--||+|.+..+.+.. .+.. ++|.|+++.+++.+++++...++...+.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 44555677777888999999999999999887653 3334 8999999999999999999999988899999
Q ss_pred cCCCCCCCCCCccceEEeccccccc-C---C----HHHHHHHHHhccCCCCEEE
Q 018194 179 GNFLKMPFEDNHFDGAYSIEATCHA-P---K----LEDVYAEVFRVLKPGSLYV 224 (359)
Q Consensus 179 ~d~~~~~~~~~~fD~v~~~~~l~~~-~---~----~~~~l~~~~~~LkpgG~l~ 224 (359)
.|+.++++.++++|.|+++--...- . + ...+++++.++|+|...++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999998777899999998655432 1 1 3467888899999933333
No 174
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.2e-08 Score=87.07 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=110.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE- 187 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~- 187 (359)
...|+..+.+.||.+|||-|+|+|.++..+++. +..+++.+|+.....+.|++.+++.++++|+++.+-|++...|.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 467888999999999999999999999999985 44699999999999999999999999999999999999986654
Q ss_pred -CCccceEEecccccccCCHHHHHHHHHhccCCCCE-EEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHH
Q 018194 188 -DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSL-YVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITE 265 (359)
Q Consensus 188 -~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (359)
...+|.|+.. +|.+..++-.++.+||.+|. ++.... - +.. .+.-.+
T Consensus 174 ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csFSP-----------C----IEQ------------vqrtce 221 (314)
T KOG2915|consen 174 KSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFSP-----------C----IEQ------------VQRTCE 221 (314)
T ss_pred cccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEeccH-----------H----HHH------------HHHHHH
Confidence 4678888774 57888889999999998874 443211 1 111 123446
Q ss_pred HHHhCCCeEEEEEec
Q 018194 266 IAKRVGFEVVKEKDL 280 (359)
Q Consensus 266 ~l~~aGF~~i~~~~~ 280 (359)
+|+++||..++.-.+
T Consensus 222 ~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 222 ALRSLGFIEIETVEV 236 (314)
T ss_pred HHHhCCCceEEEEEe
Confidence 788999998876544
No 175
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.02 E-value=8.4e-09 Score=88.03 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=89.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 018194 99 PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 177 (359)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~ 177 (359)
|....++..+...+.+.+.-.. .+..|||+|||+|..+..++. .+.+.|+++|.|+.++..|.+++.+.++.+.+.++
T Consensus 126 PRpETEE~V~~Vid~~~~~~~~-~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 126 PRPETEEWVEAVIDALNNSEHS-KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred cCccHHHHHHHHHHHHhhhhhc-ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 3333344444444444333333 345899999999999998887 46789999999999999999999999999899988
Q ss_pred EcCCCC-----CCCCCCccceEEecccccccCC--------------------------HHHHHHHHHhccCCCCEEEE
Q 018194 178 CGNFLK-----MPFEDNHFDGAYSIEATCHAPK--------------------------LEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 178 ~~d~~~-----~~~~~~~fD~v~~~~~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~ 225 (359)
+.+++. .+...+++|+++++--.-.-.| ...++.-+.|+|+|||.+.+
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 665543 2245689999998743211111 23456667799999999887
No 176
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.01 E-value=6.9e-09 Score=90.86 Aligned_cols=105 Identities=19% Similarity=0.182 Sum_probs=81.3
Q ss_pred CCCEEEEECCCCCh----HHHHHHhhc------CCEEEEEeCCHHHHHHHHHHHHH-----cCC----------------
Q 018194 122 AGDRILDVGCGVGG----PMRAIAAHS------RANVVGITINEYQVNRARLHNKK-----AGL---------------- 170 (359)
Q Consensus 122 ~~~~vLDiGcG~G~----~~~~l~~~~------~~~v~g~D~s~~~~~~a~~~~~~-----~~~---------------- 170 (359)
...+|.-+||+||. ++..+.+.. ..+|+|+|+|...++.|+.-.-. .++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36799999999997 333333432 47999999999999998753211 111
Q ss_pred -------CCCeEEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEE
Q 018194 171 -------DSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 171 -------~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
...|.|...|+.+.++..+.||+|+|++++.++. ...++++.++..|+|||.|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1468888999887663457899999999999996 4678999999999999999983
No 177
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.01 E-value=9.5e-10 Score=97.50 Aligned_cols=104 Identities=17% Similarity=0.206 Sum_probs=80.7
Q ss_pred CCEEEEECCCCChH----HHHHHhhc-----CCEEEEEeCCHHHHHHHHHHH------------------HH--------
Q 018194 123 GDRILDVGCGVGGP----MRAIAAHS-----RANVVGITINEYQVNRARLHN------------------KK-------- 167 (359)
Q Consensus 123 ~~~vLDiGcG~G~~----~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~------------------~~-------- 167 (359)
..+|+..||.||.= +..+.+.. ..+|+|+|+|+.+++.|++-. ..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 47999999999972 22233321 368999999999999998642 00
Q ss_pred ----cCCCCCeEEEEcCCCCCCCC-CCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEE
Q 018194 168 ----AGLDSLCEVVCGNFLKMPFE-DNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 168 ----~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..+...|.|.+.|+.+.+++ .+.||+|+|.+++.|++ ....+++++.+.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01235789999999885543 57899999999999995 4789999999999999998873
No 178
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.01 E-value=1.7e-09 Score=96.41 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 189 (359)
..+.+++.+.+.++.+|||||||+|.++..+++.. .+|+|+|+++.|++.++++... ++++++++|+.++++++-
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~ 104 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSEL 104 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHc
Confidence 44567777788889999999999999999999974 4999999999999999887632 479999999998876532
Q ss_pred ccceEEeccc
Q 018194 190 HFDGAYSIEA 199 (359)
Q Consensus 190 ~fD~v~~~~~ 199 (359)
.+|.|+++-.
T Consensus 105 ~~~~vv~NlP 114 (272)
T PRK00274 105 QPLKVVANLP 114 (272)
T ss_pred CcceEEEeCC
Confidence 2577877643
No 179
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.99 E-value=1.8e-08 Score=87.97 Aligned_cols=145 Identities=22% Similarity=0.285 Sum_probs=102.6
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH----------------------------------
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK---------------------------------- 167 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~---------------------------------- 167 (359)
...+||--|||.|+++.++|.. |..+.|.|.|-.|+-..+-....
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 4579999999999999999996 78999999999996543332110
Q ss_pred -----cCCCCCeEEEEcCCCCCCCCC---CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCch
Q 018194 168 -----AGLDSLCEVVCGNFLKMPFED---NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239 (359)
Q Consensus 168 -----~~~~~~i~~~~~d~~~~~~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 239 (359)
...+.+.+...+|+.+.-.++ ++||+|+..+.+...++..+.|+.+.++|||||..+=.- +-.|....
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~G---PLlyh~~~- 210 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFG---PLLYHFEP- 210 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecC---CccccCCC-
Confidence 001235677788887754344 799999999988888899999999999999999665321 10000000
Q ss_pred HHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEe
Q 018194 240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKD 279 (359)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~ 279 (359)
........--.+.+++.++++..||+++..+.
T Consensus 211 --------~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 211 --------MSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred --------CCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 00000111234789999999999999998766
No 180
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.7e-09 Score=87.53 Aligned_cols=113 Identities=24% Similarity=0.246 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcC--CCCCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCC---------CCC
Q 018194 108 RLHEEMAVDLID--VKAGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGL---------DSL 173 (359)
Q Consensus 108 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~---------~~~ 173 (359)
..+...+++.|. +.||.+.||+|+|+|.++..++.. ++..++|||.-++.++.++++..+.-- ..+
T Consensus 66 p~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 66 PHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred hHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 334455666665 789999999999999999988864 344559999999999999998776431 236
Q ss_pred eEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 174 CEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 174 i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+.++.+|....--+.++||.|++.... .+..+++...|+|||++++-
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCeEEEe
Confidence 788999998866667899999997543 34456778889999999983
No 181
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.98 E-value=8.6e-09 Score=97.38 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=77.1
Q ss_pred CCEEEEECCCCChHHHHHHhhc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEec
Q 018194 123 GDRILDVGCGVGGPMRAIAAHS-----RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSI 197 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~ 197 (359)
+..|+|||||+|.++...++.. ..+|++++-|+.++...+++....++.++|+++++|++++..+ .+.|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5789999999999987665531 3699999999999988888877888889999999999998765 489999985
Q ss_pred cccccc--CCHHHHHHHHHhccCCCCEEE
Q 018194 198 EATCHA--PKLEDVYAEVFRVLKPGSLYV 224 (359)
Q Consensus 198 ~~l~~~--~~~~~~l~~~~~~LkpgG~l~ 224 (359)
..-... .-..++|....|.|||||.++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 432222 235578899999999999886
No 182
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.97 E-value=1e-08 Score=85.15 Aligned_cols=126 Identities=21% Similarity=0.309 Sum_probs=98.7
Q ss_pred EEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccccc
Q 018194 125 RILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA 203 (359)
Q Consensus 125 ~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 203 (359)
+++|||+|.|..+..++- .|..+++.+|.+..-+...+......+++ |+++++..+++ +....+||+|+++.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cccCCCccEEEeehh----
Confidence 899999999999999886 57789999999999999999999999986 89999999998 445689999999885
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194 204 PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLA 281 (359)
Q Consensus 204 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~ 281 (359)
.....++.-+...+++||.+++.- ... ... ...+....++..|.+...+..+.
T Consensus 125 ~~l~~l~~~~~~~l~~~G~~l~~K---G~~------~~~----------------El~~~~~~~~~~~~~~~~v~~~~ 177 (184)
T PF02527_consen 125 APLDKLLELARPLLKPGGRLLAYK---GPD------AEE----------------ELEEAKKAWKKLGLKVLSVPEFE 177 (184)
T ss_dssp SSHHHHHHHHGGGEEEEEEEEEEE---SS--------HH----------------HHHTHHHHHHCCCEEEEEEEEEE
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEc---CCC------hHH----------------HHHHHHhHHHHhCCEEeeecccc
Confidence 578899999999999999999842 110 000 11355667778888887776663
No 183
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.95 E-value=1.1e-08 Score=85.81 Aligned_cols=103 Identities=15% Similarity=0.030 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C-CCC-ccceEEec
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-F-EDN-HFDGAYSI 197 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-~~~-~fD~v~~~ 197 (359)
.+.+|||++||+|.++.+++.+...+|+++|.++.+++.++++.+..++.++++++.+|+.+. . + ... .||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 578999999999999999998744599999999999999999999888877899999999552 1 1 122 36777765
Q ss_pred ccccccCCHHHHHHHHH--hccCCCCEEEE
Q 018194 198 EATCHAPKLEDVYAEVF--RVLKPGSLYVS 225 (359)
Q Consensus 198 ~~l~~~~~~~~~l~~~~--~~LkpgG~l~~ 225 (359)
-... ......++..+. .+|+++|.+++
T Consensus 129 PPy~-~~~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 129 PPFF-NGALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred cCCC-CCcHHHHHHHHHHCCCCCCCeEEEE
Confidence 4332 223455555554 46888887765
No 184
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.93 E-value=1.7e-08 Score=88.46 Aligned_cols=101 Identities=19% Similarity=0.164 Sum_probs=81.9
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC 201 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 201 (359)
.+..|||+|||+|.++...++....+|++++-| +|.+.|++..+.+.+.++|.++.+.+++..+| ++.|+|++--+-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 578999999999999998888655799999975 78999999999999999999999999998876 6789999854332
Q ss_pred ccCC--HHHHHHHHHhccCCCCEEE
Q 018194 202 HAPK--LEDVYAEVFRVLKPGSLYV 224 (359)
Q Consensus 202 ~~~~--~~~~l~~~~~~LkpgG~l~ 224 (359)
.+-+ ..+..-..++.|||.|..+
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCccc
Confidence 2222 3344455679999999886
No 185
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.91 E-value=1.5e-08 Score=87.82 Aligned_cols=162 Identities=18% Similarity=0.196 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCC-CCCEEEEECCCC--ChHHHHHHh--hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 018194 108 RLHEEMAVDLIDVK-AGDRILDVGCGV--GGPMRAIAA--HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL 182 (359)
Q Consensus 108 ~~~~~~~~~~~~~~-~~~~vLDiGcG~--G~~~~~l~~--~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 182 (359)
+.+.....+.+-.. .-...||||||- -....++++ .+.++|+-+|++|..+..++.......- ....++++|+.
T Consensus 53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r 131 (267)
T PF04672_consen 53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLR 131 (267)
T ss_dssp HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT
T ss_pred HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCC
Confidence 33333344444333 335899999994 447778877 4789999999999999999988765421 23899999998
Q ss_pred CCC--CC----CCccc-----eEEecccccccC---CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhh
Q 018194 183 KMP--FE----DNHFD-----GAYSIEATCHAP---KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGI 248 (359)
Q Consensus 183 ~~~--~~----~~~fD-----~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (359)
+.. +. .+-+| .+++..++||++ ++..+++.++..|.||.+|++...+... . ..........+
T Consensus 132 ~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~--~--p~~~~~~~~~~ 207 (267)
T PF04672_consen 132 DPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDG--A--PERAEALEAVY 207 (267)
T ss_dssp -HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TT--S--HHHHHHHHHHH
T ss_pred CHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCC--C--HHHHHHHHHHH
Confidence 742 11 12333 678888999996 4889999999999999999997654321 1 11122222333
Q ss_pred hcCCCCCCCCCHHHHHHHHHhCCCeEEE
Q 018194 249 ERGDALPGLRSYAEITEIAKRVGFEVVK 276 (359)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~aGF~~i~ 276 (359)
........+++.+++.++|. ||+.++
T Consensus 208 ~~~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 208 AQAGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp HHCCS----B-HHHHHHCCT--TSEE-T
T ss_pred HcCCCCceecCHHHHHHHcC--CCccCC
Confidence 33334446778999999987 999875
No 186
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.88 E-value=3.5e-08 Score=87.12 Aligned_cols=85 Identities=22% Similarity=0.253 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED 188 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 188 (359)
...+.+++.+...++.+|||+|||+|.++..+++.. ..|+++|+++.+++.++++... ..+++++++|+.+.+++
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence 445667777788889999999999999999999864 5799999999999999877643 35799999999987754
Q ss_pred Cccc---eEEeccc
Q 018194 189 NHFD---GAYSIEA 199 (359)
Q Consensus 189 ~~fD---~v~~~~~ 199 (359)
.+| +|+++..
T Consensus 91 -~~d~~~~vvsNlP 103 (253)
T TIGR00755 91 -DFPKQLKVVSNLP 103 (253)
T ss_pred -HcCCcceEEEcCC
Confidence 466 6666543
No 187
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.87 E-value=4.5e-08 Score=84.08 Aligned_cols=141 Identities=15% Similarity=0.160 Sum_probs=81.2
Q ss_pred HHHhcCC-CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCCCC-----C
Q 018194 114 AVDLIDV-KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC-EVVCGNFLKMP-----F 186 (359)
Q Consensus 114 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~~~-----~ 186 (359)
++..+.+ .++.+|||+|||||.++..+++....+|+++|+++.|+....+. .+++ .+...|+.... .
T Consensus 66 ~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~------~~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 66 ALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ------DERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred HHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc------CCCeeEeecCCcccCCHhHcCC
Confidence 4444443 36789999999999999999997445899999999888762211 1122 23333444221 1
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCC----CCCCHHH
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALP----GLRSYAE 262 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 262 (359)
.-..+|++++... ..+..+.+.|+| |.+++.- .+.+.... .....+.-.. +..-...
T Consensus 140 d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~L~---KPqFE~~~-------~~~~~~giv~~~~~~~~~~~~ 200 (228)
T TIGR00478 140 DFATFDVSFISLI--------SILPELDLLLNP-NDLTLLF---KPQFEAGR-------EKKNKKGVVRDKEAIALALHK 200 (228)
T ss_pred CceeeeEEEeehH--------hHHHHHHHHhCc-CeEEEEc---ChHhhhcH-------hhcCcCCeecCHHHHHHHHHH
Confidence 2235676665443 357889999999 7766531 11111000 0000100000 1112356
Q ss_pred HHHHHHhCCCeEEEEEe
Q 018194 263 ITEIAKRVGFEVVKEKD 279 (359)
Q Consensus 263 ~~~~l~~aGF~~i~~~~ 279 (359)
+...+.+.||+++....
T Consensus 201 ~~~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 201 VIDKGESPDFQEKKIIF 217 (228)
T ss_pred HHHHHHcCCCeEeeEEE
Confidence 67778889999887654
No 188
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=7.9e-09 Score=79.57 Aligned_cols=91 Identities=15% Similarity=0.201 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 189 (359)
+...+-.-.+--.|++++|+|||.|.++...+-.....|+|+|++|+.++.+++++++..+ ++.+.++|+.++.+..+
T Consensus 36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g 113 (185)
T KOG3420|consen 36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGG 113 (185)
T ss_pred HHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCC
Confidence 3344444455457899999999999999766654456999999999999999999988765 47999999999877779
Q ss_pred ccceEEecccccc
Q 018194 190 HFDGAYSIEATCH 202 (359)
Q Consensus 190 ~fD~v~~~~~l~~ 202 (359)
.||.++.+--+..
T Consensus 114 ~fDtaviNppFGT 126 (185)
T KOG3420|consen 114 IFDTAVINPPFGT 126 (185)
T ss_pred eEeeEEecCCCCc
Confidence 9999998876654
No 189
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.86 E-value=2.8e-07 Score=77.88 Aligned_cols=129 Identities=22% Similarity=0.255 Sum_probs=102.5
Q ss_pred CCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc-cceEEecccc
Q 018194 123 GDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH-FDGAYSIEAT 200 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-fD~v~~~~~l 200 (359)
+.+++|||+|.|..+..+|- .++.+|+.+|....-+...+....+.+++ |++++++.+++..-. .. ||+|+++.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-KKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-cccCcEEEeehc-
Confidence 58999999999999999884 67889999999999999999999998885 799999999987521 23 999999875
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194 201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~ 280 (359)
.+...++.-+...+|+||.++..-+.. ... -..+........|+.++.+..+
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~~k~~~-------------~~~------------e~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLAYKGLA-------------GKD------------ELPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchhhhHHh-------------hhh------------hHHHHHHHHHhhcCcEEEEEEe
Confidence 567888889999999999887521110 000 1246777888889999988877
Q ss_pred CC
Q 018194 281 AK 282 (359)
Q Consensus 281 ~~ 282 (359)
..
T Consensus 197 ~~ 198 (215)
T COG0357 197 TV 198 (215)
T ss_pred ec
Confidence 54
No 190
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.84 E-value=1.7e-08 Score=84.76 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=78.4
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH 190 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 190 (359)
..+.+. ..++.+|+|+.||.|.++..+|+. .++.|+++|++|..++..++.++..++..++...++|+.++.. .+.
T Consensus 93 ~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~ 169 (200)
T PF02475_consen 93 RRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGK 169 (200)
T ss_dssp HHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-
T ss_pred HHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccc
Confidence 344444 567899999999999999999983 4568999999999999999999999999899999999988754 689
Q ss_pred cceEEecccccccCCHHHHHHHHHhccCCCCEEE
Q 018194 191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224 (359)
Q Consensus 191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 224 (359)
||.|++... +.-..+|..+.+++++||.+-
T Consensus 170 ~drvim~lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 170 FDRVIMNLP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEEE--T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred cCEEEECCh----HHHHHHHHHHHHHhcCCcEEE
Confidence 999988653 234468888999999998763
No 191
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.78 E-value=9.5e-08 Score=90.74 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=85.3
Q ss_pred CCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEE
Q 018194 119 DVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDNHFDGAY 195 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~ 195 (359)
+..+|.+|||++||.|.=+..++... ...|+++|+++..++..++++++.|+. |+.+...|...+. ...+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEE
Confidence 67899999999999999999998853 359999999999999999999999985 6888899987653 2236799998
Q ss_pred ecc------cccccCC----------------HHHHHHHHHhccCCCCEEEEEE
Q 018194 196 SIE------ATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 196 ~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
... ++..-|+ ..++|.++.++|||||+++...
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 422 1111111 2578999999999999997643
No 192
>PRK04148 hypothetical protein; Provisional
Probab=98.78 E-value=1.1e-07 Score=73.97 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=73.4
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCh-HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-C
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGG-PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE-D 188 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~ 188 (359)
.+++.+.+....+.+|||||||+|. ++..|++. |.+|+++|+++..++.+++. .++++.+|+.+.++. -
T Consensus 5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y 75 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIY 75 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHH
Confidence 3445555555567899999999996 88888864 78999999999999888765 268999999885432 2
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..+|+|++... -++....+.++.+.+ |.-+++.
T Consensus 76 ~~a~liysirp---p~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 76 KNAKLIYSIRP---PRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred hcCCEEEEeCC---CHHHHHHHHHHHHHc--CCCEEEE
Confidence 56899998653 235555666666543 4456554
No 193
>PRK00536 speE spermidine synthase; Provisional
Probab=98.78 E-value=2.3e-07 Score=81.20 Aligned_cols=97 Identities=11% Similarity=-0.007 Sum_probs=76.0
Q ss_pred CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCCCCCCCccceEEec
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG---LDSLCEVVCGNFLKMPFEDNHFDGAYSI 197 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~ 197 (359)
+...+||=||.|.|..++++.+++. +|+.+|+++.+++.+++.+.... -.++++++.. +.+ ...++||+|++.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 4568999999999999999999864 99999999999999999655421 1356777652 211 123689999986
Q ss_pred ccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 198 EATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.. ....+++.+++.|+|||.++..
T Consensus 147 s~-----~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 147 QE-----PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CC-----CChHHHHHHHHhcCCCcEEEEC
Confidence 43 3478889999999999999873
No 194
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=6.6e-07 Score=71.99 Aligned_cols=126 Identities=17% Similarity=0.211 Sum_probs=92.5
Q ss_pred CCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194 123 GDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT 200 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 200 (359)
..-++|||||+|..+..|++. +++.+.++|++|..++..++.+..++. ++..++.|+..- +..++.|+++.+-..
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~-l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSG-LRNESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhh-hccCCccEEEECCCc
Confidence 568999999999999999984 567899999999999988888777654 478899998763 334889988876432
Q ss_pred cccC-----------------C----HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCC
Q 018194 201 CHAP-----------------K----LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRS 259 (359)
Q Consensus 201 ~~~~-----------------~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (359)
---+ + .++++..+-.+|.|.|.+++..... -.
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~---------------------------N~ 173 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA---------------------------NK 173 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh---------------------------cC
Confidence 1110 1 2456777778889999998752111 13
Q ss_pred HHHHHHHHHhCCCeEEEEE
Q 018194 260 YAEITEIAKRVGFEVVKEK 278 (359)
Q Consensus 260 ~~~~~~~l~~aGF~~i~~~ 278 (359)
+.++.+.++.-||......
T Consensus 174 p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 174 PKEILKILEKKGYGVRIAM 192 (209)
T ss_pred HHHHHHHHhhcccceeEEE
Confidence 4678888999999876543
No 195
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=6.6e-08 Score=83.79 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE 187 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 187 (359)
....+.+.....+.+++.|||||+|.|.+|..|++. +.+|+++++++.+++..+++.. ..+|++++++|+...+++
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcch
Confidence 344678888888889999999999999999999996 5689999999999999988865 246899999999998876
Q ss_pred CC-ccceEEeccc
Q 018194 188 DN-HFDGAYSIEA 199 (359)
Q Consensus 188 ~~-~fD~v~~~~~ 199 (359)
.- .++.|+++--
T Consensus 92 ~l~~~~~vVaNlP 104 (259)
T COG0030 92 SLAQPYKVVANLP 104 (259)
T ss_pred hhcCCCEEEEcCC
Confidence 43 5788888653
No 196
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.76 E-value=1.2e-07 Score=87.32 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCC
Q 018194 106 ATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLK 183 (359)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~ 183 (359)
.++..+..+...+ .|++|||+-|=||.++...|.. |+ +|+.||+|...++.|+++++-+|+. .++.|+++|+.+
T Consensus 204 DqR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~ 279 (393)
T COG1092 204 DQRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK 279 (393)
T ss_pred HhHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH
Confidence 3444444444443 3899999999999999998885 55 9999999999999999999999875 468999999987
Q ss_pred CC----CCCCccceEEeccccc---------ccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhc
Q 018194 184 MP----FEDNHFDGAYSIEATC---------HAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIER 250 (359)
Q Consensus 184 ~~----~~~~~fD~v~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (359)
+- -...+||+|+..-.-. -..+...++..+.++|+|||.+++...... . . ...
T Consensus 280 ~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~--~---~--~~~------- 345 (393)
T COG1092 280 WLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH--F---S--SDL------- 345 (393)
T ss_pred HHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc--c---C--HHH-------
Confidence 42 2335899999743111 123567899999999999999998532111 0 0 000
Q ss_pred CCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchh
Q 018194 251 GDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWW 289 (359)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~ 289 (359)
-.+.+.+.+..+|...........++-.++.
T Consensus 346 --------f~~~i~~a~~~~~~~~~~~~~~~~~~D~p~~ 376 (393)
T COG1092 346 --------FLEIIARAAAAAGRRAQEIEGEGQPPDHPRN 376 (393)
T ss_pred --------HHHHHHHHHHhcCCcEEEeeccCCCCCcccc
Confidence 1135566677777776666544444434443
No 197
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.76 E-value=4.4e-09 Score=97.65 Aligned_cols=113 Identities=25% Similarity=0.307 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCC--CCC--CEEEEECCCCChHHHHHHhhcCCEEEEE---eCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 018194 107 TRLHEEMAVDLIDV--KAG--DRILDVGCGVGGPMRAIAAHSRANVVGI---TINEYQVNRARLHNKKAGLDSLCEVVCG 179 (359)
Q Consensus 107 ~~~~~~~~~~~~~~--~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~g~---D~s~~~~~~a~~~~~~~~~~~~i~~~~~ 179 (359)
.....+.|.+.++. ..+ ..+||+|||+|.++..|.++ +..+..+ |..+.+++.|.++ |++.-+. ..
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~--~~ 170 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVPAMIG--VL 170 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccchhhh--hh
Confidence 34445556666654 222 47899999999999999885 3333222 4455666666554 5543221 22
Q ss_pred CCCCCCCCCCccceEEeccccccc-CCHHHHHHHHHhccCCCCEEEEE
Q 018194 180 NFLKMPFEDNHFDGAYSIEATCHA-PKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 180 d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
-...+||++++||+|+|..++..+ ++-..+|-++-|+|+|||++++.
T Consensus 171 ~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S 218 (506)
T PF03141_consen 171 GSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLS 218 (506)
T ss_pred ccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEec
Confidence 234689999999999999877654 34456889999999999999974
No 198
>PLN02823 spermine synthase
Probab=98.75 E-value=7.2e-08 Score=87.75 Aligned_cols=103 Identities=22% Similarity=0.241 Sum_probs=79.8
Q ss_pred CCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCC-CCCCCccceEEe
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAG---LDSLCEVVCGNFLKM-PFEDNHFDGAYS 196 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~fD~v~~ 196 (359)
...+||.||+|.|..++++.++. ..+|+.+|+++.+++.+++.+...+ -.++++++.+|+... ....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 45799999999999999998854 4689999999999999999875321 246899999998874 334578999998
Q ss_pred ccccccc----C---CHHHHHH-HHHhccCCCCEEEE
Q 018194 197 IEATCHA----P---KLEDVYA-EVFRVLKPGSLYVS 225 (359)
Q Consensus 197 ~~~l~~~----~---~~~~~l~-~~~~~LkpgG~l~~ 225 (359)
... ... + --.++++ .+.+.|+|||.+++
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 632 111 1 1346787 89999999999876
No 199
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.75 E-value=2e-07 Score=77.85 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=90.4
Q ss_pred CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCccceEEecccc
Q 018194 124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE---DNHFDGAYSIEAT 200 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~v~~~~~l 200 (359)
.++|||||=+......- ..-..|+.||+++. .-.+.+.|+.+.|+| .+.||+|.+..+|
T Consensus 53 lrlLEVGals~~N~~s~--~~~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SGWFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred ceEEeecccCCCCcccc--cCceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 69999999865543322 22257999999862 125778999988764 6799999999999
Q ss_pred cccCCHH---HHHHHHHhccCCCCE-----EEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCC
Q 018194 201 CHAPKLE---DVYAEVFRVLKPGSL-----YVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGF 272 (359)
Q Consensus 201 ~~~~~~~---~~l~~~~~~LkpgG~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 272 (359)
.++|++. +.++.+.+.|+|+|. ++++-.... + .-..+.+.+.+.++|+..||
T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C---------v-----------~NSRy~~~~~l~~im~~LGf 174 (219)
T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC---------V-----------TNSRYMTEERLREIMESLGF 174 (219)
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH---------h-----------hcccccCHHHHHHHHHhCCc
Confidence 9999754 799999999999999 776521110 0 01245677899999999999
Q ss_pred eEEEEEecCC
Q 018194 273 EVVKEKDLAK 282 (359)
Q Consensus 273 ~~i~~~~~~~ 282 (359)
..++.+....
T Consensus 175 ~~~~~~~~~K 184 (219)
T PF11968_consen 175 TRVKYKKSKK 184 (219)
T ss_pred EEEEEEecCe
Confidence 9999876543
No 200
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.74 E-value=5.9e-08 Score=93.72 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=86.6
Q ss_pred CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEecc
Q 018194 122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGAYSIE 198 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v~~~~ 198 (359)
.+..+||||||.|.++..+|. +|...++|+|++...+..+.++....++. |+.++..|+..+ -++++++|.|+.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 456899999999999999998 58899999999999999998888888874 788888887543 26788999999987
Q ss_pred cccccCC--------HHHHHHHHHhccCCCCEEEEE
Q 018194 199 ATCHAPK--------LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 199 ~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.=.|... ...+++.+.++|||||.+.+.
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 6554321 358999999999999999874
No 201
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.73 E-value=2.7e-07 Score=85.57 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 018194 101 KSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN 180 (359)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d 180 (359)
.......+.+.+.+...+... +.+|||++||+|.++..+++.. .+|+|+|+|+.+++.+++++...++. |++++.+|
T Consensus 186 Q~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d 262 (362)
T PRK05031 186 QPNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGID-NVQIIRMS 262 (362)
T ss_pred ccCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECC
Confidence 333445566666666666533 3579999999999999998863 59999999999999999999888874 89999999
Q ss_pred CCCC-C-CC--------------CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 181 FLKM-P-FE--------------DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 181 ~~~~-~-~~--------------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+.+. + +. ...||+|+..-.= ..-...+++.+.+ |++.+++.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 263 AEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred HHHHHHHHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHHc---cCCEEEEE
Confidence 8763 1 10 1258999885431 1113455555544 67777663
No 202
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.73 E-value=1.2e-08 Score=84.95 Aligned_cols=117 Identities=18% Similarity=0.235 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCC--CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-
Q 018194 108 RLHEEMAVDLIDV--KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM- 184 (359)
Q Consensus 108 ~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~- 184 (359)
.+..+.+...+.. -++.++||+-||+|.++.+...+...+|+.+|.++..++..+++.+..+..+++.++..|+...
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l 105 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL 105 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH
Confidence 3344444444432 3688999999999999999888755699999999999999999999998877799999996542
Q ss_pred C-C--CCCccceEEecccccccCC-HHHHHHHHH--hccCCCCEEEE
Q 018194 185 P-F--EDNHFDGAYSIEATCHAPK-LEDVYAEVF--RVLKPGSLYVS 225 (359)
Q Consensus 185 ~-~--~~~~fD~v~~~~~l~~~~~-~~~~l~~~~--~~LkpgG~l~~ 225 (359)
. . ...+||+|++.-.... .. ...++..+. .+|+++|.+++
T Consensus 106 ~~~~~~~~~fDiIflDPPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 106 LKLAKKGEKFDIIFLDPPYAK-GLYYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp HHHHHCTS-EEEEEE--STTS-CHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred HhhcccCCCceEEEECCCccc-chHHHHHHHHHHHCCCCCCCEEEEE
Confidence 1 1 4679999998654332 23 377888887 78999998887
No 203
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.72 E-value=9.9e-08 Score=88.63 Aligned_cols=99 Identities=18% Similarity=0.097 Sum_probs=80.8
Q ss_pred CCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194 123 GDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC 201 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 201 (359)
+.+|||++||+|..+..++...+ .+|+++|+++..++.++++++..++. ++++.++|+..+....+.||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 46899999999999999987544 48999999999999999999888775 57799999876421146799999853 1
Q ss_pred ccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 202 HAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 202 ~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..+..++....+.++|||.+.+.
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEE
Confidence 34577888878889999999986
No 204
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.72 E-value=5e-08 Score=86.42 Aligned_cols=116 Identities=21% Similarity=0.289 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC-C
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLKM-P 185 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~ 185 (359)
+..+..+.+.. .+.+|||+-|=||.++...+.....+|+.||.|...++.+++++..+++. .+++++..|+.+. .
T Consensus 112 R~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~ 188 (286)
T PF10672_consen 112 RENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLK 188 (286)
T ss_dssp HHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHH
T ss_pred HhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH
Confidence 33344444443 47899999999999999877643248999999999999999999998875 5799999998763 1
Q ss_pred --CCCCccceEEeccccc------ccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 186 --FEDNHFDGAYSIEATC------HAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 186 --~~~~~fD~v~~~~~l~------~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
-..++||+|++.-.-. -..+...++..+.++|+|||.++++
T Consensus 189 ~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 189 RLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp HHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1246899999743211 1125678899999999999998764
No 205
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.72 E-value=9e-08 Score=83.23 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=90.7
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC---------------------------CCe
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD---------------------------SLC 174 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~---------------------------~~i 174 (359)
.|.++||||||+-..-..-+...-.+|+..|.++.-++..++...+.+-. ..|
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 57799999999854432222222248999999998887666554332110 012
Q ss_pred -EEEEcCCCCCC-CCC-----CccceEEecccccccC-C---HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHH
Q 018194 175 -EVVCGNFLKMP-FED-----NHFDGAYSIEATCHAP-K---LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVD 243 (359)
Q Consensus 175 -~~~~~d~~~~~-~~~-----~~fD~v~~~~~l~~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 243 (359)
.++.+|+.+.+ +.. .+||+|++.+.++... | ...+++++.++|||||.|++........|......
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~--- 212 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHK--- 212 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEE---
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEe---
Confidence 36778887743 322 2599999999988763 3 56899999999999999999765444333221110
Q ss_pred HHhhhhcCCCCC-CCCCHHHHHHHHHhCCCeEEEEE
Q 018194 244 IIQGIERGDALP-GLRSYAEITEIAKRVGFEVVKEK 278 (359)
Q Consensus 244 ~~~~~~~~~~~~-~~~~~~~~~~~l~~aGF~~i~~~ 278 (359)
.+ -..+.+.+++.|+++||++++.+
T Consensus 213 ----------F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 213 ----------FPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ----------EE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ----------cccccCCHHHHHHHHHHcCCEEEecc
Confidence 11 12467899999999999998877
No 206
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.72 E-value=9.3e-08 Score=81.71 Aligned_cols=86 Identities=26% Similarity=0.337 Sum_probs=75.2
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 189 (359)
..+.|....++++++.|||||.|||.++..|.+. +.+|+++++++.|+....++........+.+++++|+...++|
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P-- 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP-- 122 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--
Confidence 4566778889999999999999999999999985 7899999999999999999988666568899999999988654
Q ss_pred ccceEEecc
Q 018194 190 HFDGAYSIE 198 (359)
Q Consensus 190 ~fD~v~~~~ 198 (359)
.||.++++.
T Consensus 123 ~fd~cVsNl 131 (315)
T KOG0820|consen 123 RFDGCVSNL 131 (315)
T ss_pred ccceeeccC
Confidence 689998854
No 207
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.70 E-value=1.9e-09 Score=87.95 Aligned_cols=147 Identities=14% Similarity=0.114 Sum_probs=92.9
Q ss_pred CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc
Q 018194 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH 202 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 202 (359)
+.++||+|+|.|..+..++... .+|++.+.|..|..+.+++. +-...+.+..-.+-+||+|.|...+.-
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk~----------ynVl~~~ew~~t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKKN----------YNVLTEIEWLQTDVKLDLILCLNLLDR 181 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhcC----------CceeeehhhhhcCceeehHHHHHHHHh
Confidence 4699999999999999998864 38999999999998877641 111112222222446999999999987
Q ss_pred cCCHHHHHHHHHhccCC-CCEEEEEEeeeCcccccCchHHHHH-HhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194 203 APKLEDVYAEVFRVLKP-GSLYVSYEWVTTDKYEAENKEHVDI-IQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 203 ~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~ 280 (359)
..++-.+|+.++.+|+| .|++++.-..+-..|...+...... -..+....+...-.....+.++|+++||.+.....+
T Consensus 182 c~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 182 CFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred hcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 78999999999999999 8988875333322222111100000 000011111100012245678899999998765443
No 208
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.67 E-value=3.2e-07 Score=84.70 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 018194 104 RDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK 183 (359)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 183 (359)
....+.+.+.+.+.+...+ .+|||++||+|.++..+++.. .+|+|+|+++.+++.+++++...++. +++++.+|+.+
T Consensus 180 ~~~~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~ 256 (353)
T TIGR02143 180 AAVNIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHH
Confidence 3444555666666665433 479999999999999999864 59999999999999999999888874 69999999876
Q ss_pred CCCC----------C------CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 184 MPFE----------D------NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 184 ~~~~----------~------~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..-. . ..||+|+..-. ...-...+++.+.+ |++.+++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 257 FTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred HHHHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CCcEEEEE
Confidence 3210 1 13798887442 11113455555543 77777764
No 209
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.67 E-value=2.8e-07 Score=81.62 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=83.8
Q ss_pred CCCCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCCC-CCCCccce
Q 018194 119 DVKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAG--L-DSLCEVVCGNFLKMP-FEDNHFDG 193 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~fD~ 193 (359)
+..| .+||-||.|.|..++++.++. -.+++.+|+++..++.+++.+.... . .++++++..|..+.- -..++||+
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 3444 699999999999999999974 3699999999999999999876542 2 368999999987743 22348999
Q ss_pred EEecccccccC----CHHHHHHHHHhccCCCCEEEEE
Q 018194 194 AYSIEATCHAP----KLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 194 v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
|++...=.--| .-..+++.+++.|+|+|.++..
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99865322101 1378999999999999999975
No 210
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.67 E-value=2e-08 Score=86.68 Aligned_cols=100 Identities=30% Similarity=0.496 Sum_probs=84.7
Q ss_pred CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCCCCCCCCccceEEeccc
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC-EVVCGNFLKMPFEDNHFDGAYSIEA 199 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~~~~~~~~fD~v~~~~~ 199 (359)
..+..++|+|||.|..+. ..+.+.++|.|++...+..+++. +. ....+|+..+|+.+.+||.+++..+
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~--------~~~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS--------GGDNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC--------CCceeehhhhhcCCCCCCccccchhhhh
Confidence 348899999999996553 23678999999999998887653 23 6788999999999999999999999
Q ss_pred ccccCC---HHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194 200 TCHAPK---LEDVYAEVFRVLKPGSLYVSYEWVTT 231 (359)
Q Consensus 200 l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~ 231 (359)
+||+.. ...+++++.|+|+|||...++.|...
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 999963 67899999999999999999887764
No 211
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.65 E-value=9.1e-08 Score=85.17 Aligned_cols=89 Identities=21% Similarity=0.259 Sum_probs=72.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 018194 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-- 185 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 185 (359)
+.+.+++.+.+.++..+||++||.|..+..+++.. ..+|+|+|.++.+++.++++... ..+++++++|+.++.
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHH
Confidence 34567777778889999999999999999999864 47999999999999999988754 358999999998854
Q ss_pred CCCC--ccceEEeccccc
Q 018194 186 FEDN--HFDGAYSIEATC 201 (359)
Q Consensus 186 ~~~~--~fD~v~~~~~l~ 201 (359)
.+.+ ++|.|++.....
T Consensus 84 l~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 84 LAEGLGKVDGILLDLGVS 101 (296)
T ss_pred HHcCCCccCEEEECCCcc
Confidence 2222 799999876544
No 212
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.65 E-value=4.5e-07 Score=74.44 Aligned_cols=124 Identities=22% Similarity=0.205 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHHhcCC--CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 018194 102 SHRDATRLHEEMAVDLIDV--KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179 (359)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~ 179 (359)
..+....+..+.+..++.. -.|.++||+-+|+|.++.+.+.+....++.+|.+...+...+++.+..++..++.++..
T Consensus 21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~ 100 (187)
T COG0742 21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRN 100 (187)
T ss_pred CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence 4455556666777777754 57899999999999999999887667999999999999999999999988888999999
Q ss_pred CCCCC-C-CC-CCccceEEecccccc-cCCHHHHHHH--HHhccCCCCEEEE
Q 018194 180 NFLKM-P-FE-DNHFDGAYSIEATCH-APKLEDVYAE--VFRVLKPGSLYVS 225 (359)
Q Consensus 180 d~~~~-~-~~-~~~fD~v~~~~~l~~-~~~~~~~l~~--~~~~LkpgG~l~~ 225 (359)
|+... + .. .++||+|+..--... +-+....+.. -..+|+|+|.+++
T Consensus 101 da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 101 DALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred cHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEE
Confidence 99843 1 12 225999999765541 1122334444 4577999999987
No 213
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.63 E-value=3.2e-07 Score=76.92 Aligned_cols=105 Identities=24% Similarity=0.270 Sum_probs=86.5
Q ss_pred CCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-----CCCCc
Q 018194 119 DVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-----FEDNH 190 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-----~~~~~ 190 (359)
.+-.++++||||.=||..+..+|.. .+.+|+++|+++...+.+.+..+..|...+|+++++++.+. + .+.++
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCc
Confidence 3345679999999999988887763 35799999999999999999999999999999999999773 1 34689
Q ss_pred cceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
||+++... .-.+....+.++.+++|+||.+++-
T Consensus 150 fDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 150 FDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred eeEEEEcc---chHHHHHHHHHHHhhcccccEEEEe
Confidence 99998753 1124558889999999999999873
No 214
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.61 E-value=4.6e-07 Score=81.78 Aligned_cols=114 Identities=23% Similarity=0.271 Sum_probs=95.3
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF 191 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 191 (359)
..+++.. .+|.+|||.=+|.|.++..+|+....+|+++|++|..++..++++..+++...+..+++|.......-+.+
T Consensus 180 ~Rva~~v--~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~a 257 (341)
T COG2520 180 ARVAELV--KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVA 257 (341)
T ss_pred HHHHhhh--cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccC
Confidence 3344443 35899999999999999999997445699999999999999999999998888999999999876544789
Q ss_pred ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194 192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 231 (359)
Q Consensus 192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 231 (359)
|.|++... .+..+++....+.+++||.+..++....
T Consensus 258 DrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 258 DRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred CEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 99998763 3567788889999999999998876554
No 215
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.3e-06 Score=82.08 Aligned_cols=131 Identities=22% Similarity=0.286 Sum_probs=99.5
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 018194 91 SFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL 170 (359)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~ 170 (359)
.+.+.++..........+.+...+.+.+...++.++||+=||.|.++..||+. ..+|+|+|+++.+++.|+++++.+++
T Consensus 262 ~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i 340 (432)
T COG2265 262 SFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGI 340 (432)
T ss_pred EEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCC
Confidence 44445544445556777888888999999989999999999999999999975 46999999999999999999999998
Q ss_pred CCCeEEEEcCCCCCCCC---CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 171 DSLCEVVCGNFLKMPFE---DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 171 ~~~i~~~~~d~~~~~~~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
. |++|..+++++.... ...+|.|+..-.=.- --..+++.+.+ ++|-..+++.
T Consensus 341 ~-N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G--~~~~~lk~l~~-~~p~~IvYVS 395 (432)
T COG2265 341 D-NVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG--ADREVLKQLAK-LKPKRIVYVS 395 (432)
T ss_pred C-cEEEEeCCHHHHhhhccccCCCCEEEECCCCCC--CCHHHHHHHHh-cCCCcEEEEe
Confidence 6 599999999886522 247899987431100 01355555554 6777777774
No 216
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.60 E-value=1.9e-07 Score=78.92 Aligned_cols=116 Identities=25% Similarity=0.329 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHH-------HcCC-CCCeEEEEc
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNK-------KAGL-DSLCEVVCG 179 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~-------~~~~-~~~i~~~~~ 179 (359)
.....+++.+.+.+++..+|||||.|......+...+++ .+||++.+...+.|+.... ..+. ..++++.++
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 344556677889999999999999999988888755665 9999999998877765332 2232 346888899
Q ss_pred CCCCCCCCC---CccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194 180 NFLKMPFED---NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 180 d~~~~~~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
|+.+.++.. ...|+|+++... .-++....|.+....||||-+++.
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~-F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTC-FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TT-T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred CccccHhHhhhhcCCCEEEEeccc-cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 987743211 245999998754 234677788888999999988875
No 217
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=5.8e-07 Score=73.00 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=99.4
Q ss_pred HHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHH----HHHH-HHHHHcCCCCCeEEEEcCCCCCC
Q 018194 113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQV----NRAR-LHNKKAGLDSLCEVVCGNFLKMP 185 (359)
Q Consensus 113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~----~~a~-~~~~~~~~~~~i~~~~~d~~~~~ 185 (359)
.++....++++++|+|+=.|.|.+++.++... ...|+++-..+... ...+ ..........|++.+-.+...+.
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG 118 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC
Confidence 35667789999999999999999999998853 34777765543311 1000 11111112234555555555544
Q ss_pred CCCCccceEEecccccc-------cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCC
Q 018194 186 FEDNHFDGAYSIEATCH-------APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLR 258 (359)
Q Consensus 186 ~~~~~fD~v~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (359)
+....|+++....-|- -....++...+++.|||||.+++.|+............ ..+..
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~-------------~~~ri 184 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTI-------------TLHRI 184 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhh-------------hhccc
Confidence 3445666654332221 12467899999999999999999886654322221111 11334
Q ss_pred CHHHHHHHHHhCCCeEEEEEecCCCC
Q 018194 259 SYAEITEIAKRVGFEVVKEKDLAKPP 284 (359)
Q Consensus 259 ~~~~~~~~l~~aGF~~i~~~~~~~~~ 284 (359)
+...+.+..+.+||.......+...+
T Consensus 185 ~~a~V~a~veaaGFkl~aeS~ilaNp 210 (238)
T COG4798 185 DPAVVIAEVEAAGFKLEAESEILANP 210 (238)
T ss_pred ChHHHHHHHHhhcceeeeeehhhcCC
Confidence 67788999999999999887775544
No 218
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.59 E-value=5.3e-07 Score=82.23 Aligned_cols=119 Identities=24% Similarity=0.310 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--------cCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEc
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--------SRANVVGITINEYQVNRARLHNKKAGLDS-LCEVVCG 179 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-~i~~~~~ 179 (359)
...+.+..++...++.+|+|.+||+|.+...+.++ ...+++|+|+++.++..++.+..-.+... +..+..+
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 34566777778888889999999999998877652 46799999999999999987765554433 2458888
Q ss_pred CCCCCCCC--CCccceEEeccccccc--C-------------------CHHHHHHHHHhccCCCCEEEEEE
Q 018194 180 NFLKMPFE--DNHFDGAYSIEATCHA--P-------------------KLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 180 d~~~~~~~--~~~fD~v~~~~~l~~~--~-------------------~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
|....+.. ...||+|+++-.+... . ....++..+.+.|++||++.++-
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 87665432 4789999987544322 0 01258899999999999987753
No 219
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.58 E-value=1.2e-07 Score=82.89 Aligned_cols=106 Identities=22% Similarity=0.254 Sum_probs=80.1
Q ss_pred CCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCC---CCCeEEEEcCCCCCC-CCCC-ccceEE
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGL---DSLCEVVCGNFLKMP-FEDN-HFDGAY 195 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~~-~~~~-~fD~v~ 195 (359)
.+.+||-||.|.|..++++.+++ ..+|+.+|+++..++.+++.+..... .++++++.+|....- -..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 56799999999999999999875 36999999999999999998765322 368999999986632 2234 899999
Q ss_pred ecccccccCC----HHHHHHHHHhccCCCCEEEEEE
Q 018194 196 SIEATCHAPK----LEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 196 ~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
....-...+. -.++++.+.+.|+|||.+++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8543222121 3689999999999999999743
No 220
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.55 E-value=1e-06 Score=78.47 Aligned_cols=139 Identities=14% Similarity=0.043 Sum_probs=88.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 189 (359)
..+...++.-...+|||+|||+|..+..+.+. . -.+++++|.|+.|++.++............... .+......+..
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 101 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFLPFP 101 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhcccccCC
Confidence 33444444345579999999999866555542 1 258999999999999998876654211111111 11111011122
Q ss_pred ccceEEecccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194 190 HFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA 267 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (359)
..|+|++.++|..+++ ...+++.+.+.+.+ .++++|...... +....++++.|
T Consensus 102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G-----------------------f~~i~~aR~~l 156 (274)
T PF09243_consen 102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG-----------------------FRRIAEARDQL 156 (274)
T ss_pred CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH-----------------------HHHHHHHHHHH
Confidence 3499999999998875 55778888777766 888877544311 11234677778
Q ss_pred HhCCCeEEE
Q 018194 268 KRVGFEVVK 276 (359)
Q Consensus 268 ~~aGF~~i~ 276 (359)
.+.|+.++.
T Consensus 157 ~~~~~~v~A 165 (274)
T PF09243_consen 157 LEKGAHVVA 165 (274)
T ss_pred hhCCCceEC
Confidence 888888765
No 221
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.54 E-value=8.6e-07 Score=89.22 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcCC-CCCCEEEEECCCCChHHHHHHhh-----c-------------------------------------
Q 018194 108 RLHEEMAVDLIDV-KAGDRILDVGCGVGGPMRAIAAH-----S------------------------------------- 144 (359)
Q Consensus 108 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-----~------------------------------------- 144 (359)
+.+...++...+. .++..++|.+||+|.+.++.+.. |
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 3444555656565 56789999999999998877541 1
Q ss_pred -CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--CCccceEEecccccc-c---CCHHHHHHHHHhcc
Q 018194 145 -RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE--DNHFDGAYSIEATCH-A---PKLEDVYAEVFRVL 217 (359)
Q Consensus 145 -~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~v~~~~~l~~-~---~~~~~~l~~~~~~L 217 (359)
..+++|+|+++.+++.|++++...|+.+.+++.++|+.+++.+ .++||+|+++--... + .+...+++.+.+.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l 334 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL 334 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence 1369999999999999999999999988899999999887643 357999999854432 1 23444555544444
Q ss_pred C---CCCEEEEE
Q 018194 218 K---PGSLYVSY 226 (359)
Q Consensus 218 k---pgG~l~~~ 226 (359)
| ||+.+++.
T Consensus 335 k~~~~g~~~~ll 346 (702)
T PRK11783 335 KQQFGGWNAALF 346 (702)
T ss_pred HHhCCCCeEEEE
Confidence 4 88888764
No 222
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.51 E-value=1.9e-06 Score=72.88 Aligned_cols=123 Identities=16% Similarity=0.183 Sum_probs=88.4
Q ss_pred EEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC-ccceEEeccccccc
Q 018194 126 ILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN-HFDGAYSIEATCHA 203 (359)
Q Consensus 126 vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~fD~v~~~~~l~~~ 203 (359)
|.||||-.|.+...|.+... .+++++|+++..++.|++.....++.+++++..+|-.+. ++.+ ..|.|+...+-..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG~- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGGE- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCHH-
Confidence 68999999999999998633 389999999999999999999999999999999996552 2333 3788887665332
Q ss_pred CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194 204 PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 204 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~ 280 (359)
-....|.+....++..-.|++. +......++++|.+.||.+++..-+
T Consensus 79 -lI~~ILe~~~~~~~~~~~lILq-----------------------------P~~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 79 -LIIEILEAGPEKLSSAKRLILQ-----------------------------PNTHAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp -HHHHHHHHTGGGGTT--EEEEE-----------------------------ESS-HHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHhhHHHhccCCeEEEe-----------------------------CCCChHHHHHHHHHCCCEEEEeEEE
Confidence 3567777777777776677763 1123468999999999999887644
No 223
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=6.9e-06 Score=75.84 Aligned_cols=116 Identities=23% Similarity=0.362 Sum_probs=89.4
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS---RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--- 185 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 185 (359)
......++..+|.+|||++++.|.=+.++++.. +..|+++|.|+.-++..+++..+.|+. |+.....|....+
T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~ 224 (355)
T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELL 224 (355)
T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccc
Confidence 445567789999999999999999888888852 456799999999999999999999986 4788888876543
Q ss_pred CCCCccceEEecc------cccccCC----------------HHHHHHHHHhccCCCCEEEEEEe
Q 018194 186 FEDNHFDGAYSIE------ATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 186 ~~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
...+.||.|+..- ++.--|+ ..++|....++|||||.|+....
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 2223599998632 2211121 34789999999999999997643
No 224
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.51 E-value=1.8e-07 Score=75.55 Aligned_cols=73 Identities=26% Similarity=0.514 Sum_probs=55.8
Q ss_pred EEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCc-cceEEecc
Q 018194 125 RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNH-FDGAYSIE 198 (359)
Q Consensus 125 ~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~-fD~v~~~~ 198 (359)
.|+|+.||.|+.+..+|+. ..+|+++|+++..++.++.+++-.|..++|+++++|+.+.. +.... +|+|++.-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 6999999999999999996 46999999999999999999999999899999999998753 22222 79998753
No 225
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.50 E-value=2.2e-06 Score=69.96 Aligned_cols=102 Identities=30% Similarity=0.435 Sum_probs=74.4
Q ss_pred EEEECCCCChHHHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCC-CccceEEecccc
Q 018194 126 ILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK--MPFED-NHFDGAYSIEAT 200 (359)
Q Consensus 126 vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~fD~v~~~~~l 200 (359)
++|+|||+|... .++.... ..++++|+++.++..++..... .....+.+...|... .++.. ..||++ +....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999976 3333222 4899999999999985554432 111116888888876 67766 489999 55544
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194 201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVT 230 (359)
Q Consensus 201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 230 (359)
.+..+....+.++.+.++|+|.+++.....
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 444348899999999999999999876544
No 226
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.48 E-value=4.2e-07 Score=75.26 Aligned_cols=98 Identities=23% Similarity=0.372 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEec
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYSI 197 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~ 197 (359)
....|+|.-||.|+.+...+.. ++.|+++|++|.-+..|+.+++-.|++++|+|+++|+.++- +....+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 3458999999999999888885 67999999999999999999999999999999999998742 333345566654
Q ss_pred ccccccCCHHHHHHHHHhccCCC
Q 018194 198 EATCHAPKLEDVYAEVFRVLKPG 220 (359)
Q Consensus 198 ~~l~~~~~~~~~l~~~~~~Lkpg 220 (359)
.....-.-...-+-.+...++|.
T Consensus 173 ppwggp~y~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 173 PPWGGPSYLRADVYDLETHLKPM 195 (263)
T ss_pred CCCCCcchhhhhhhhhhhhcchh
Confidence 43322212233334444455554
No 227
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.47 E-value=3.5e-06 Score=76.09 Aligned_cols=121 Identities=9% Similarity=0.134 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-----cCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEE
Q 018194 104 RDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-----SRANVVGITINEYQVNRARLHNKKAGLD-SLCEVV 177 (359)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~ 177 (359)
....+.+...|+..++ ++..++|+|||.|.=+..|.+. ....++++|+|..+++.+.++......+ -.+.-+
T Consensus 60 ~~iL~~~~~~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l 137 (319)
T TIGR03439 60 IEILKKHSSDIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGL 137 (319)
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEE
Confidence 4445556666776654 5679999999999977666542 2468999999999999999988733333 234448
Q ss_pred EcCCCCC----CC--CCCccceEEecc-cccccC--CHHHHHHHHHh-ccCCCCEEEEE
Q 018194 178 CGNFLKM----PF--EDNHFDGAYSIE-ATCHAP--KLEDVYAEVFR-VLKPGSLYVSY 226 (359)
Q Consensus 178 ~~d~~~~----~~--~~~~fD~v~~~~-~l~~~~--~~~~~l~~~~~-~LkpgG~l~~~ 226 (359)
++|+.+. +- ......+++... ++.+++ +...+|+++++ .|+|||.+++.
T Consensus 138 ~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 138 LGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred EecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 8888662 11 123456666554 777775 35589999999 99999998873
No 228
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.45 E-value=1.3e-06 Score=80.69 Aligned_cols=91 Identities=30% Similarity=0.434 Sum_probs=67.8
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 018194 91 SFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL 170 (359)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~ 170 (359)
.+.+++...........+.+.+.++++++..++ +|||+-||.|.++..+|+.. .+|+|+|+++.+++.|++++...++
T Consensus 166 ~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i 243 (352)
T PF05958_consen 166 SFRISPGSFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGI 243 (352)
T ss_dssp EEEEETTS---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred EEEECCCcCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCC
Confidence 345555544455566777888888999987766 89999999999999999964 5999999999999999999999887
Q ss_pred CCCeEEEEcCCCCC
Q 018194 171 DSLCEVVCGNFLKM 184 (359)
Q Consensus 171 ~~~i~~~~~d~~~~ 184 (359)
. |++|+.+++.+.
T Consensus 244 ~-n~~f~~~~~~~~ 256 (352)
T PF05958_consen 244 D-NVEFIRGDAEDF 256 (352)
T ss_dssp --SEEEEE--SHHC
T ss_pred C-cceEEEeeccch
Confidence 5 899999887653
No 229
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.44 E-value=3.4e-06 Score=75.17 Aligned_cols=177 Identities=17% Similarity=0.180 Sum_probs=113.0
Q ss_pred HHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcC-CCCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHH
Q 018194 83 IYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID-VKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNR 160 (359)
Q Consensus 83 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~ 160 (359)
.|+..++.+..|+.+. ..+.+...+...+. ++...+||-+|.|.|...+++.++|+ .+|+-+|++|.|++.
T Consensus 256 d~rLYldG~LQfsTrD-------e~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miel 328 (508)
T COG4262 256 DLRLYLDGGLQFSTRD-------EYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIEL 328 (508)
T ss_pred ceEEEEcCceeeeech-------hhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHH
Confidence 3444556666666432 22223222222222 33456999999999999999999885 599999999999999
Q ss_pred HHHH--HHHcC----CCCCeEEEEcCCCCCC-CCCCccceEEecccccccCC-----HHHHHHHHHhccCCCCEEEEEEe
Q 018194 161 ARLH--NKKAG----LDSLCEVVCGNFLKMP-FEDNHFDGAYSIEATCHAPK-----LEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 161 a~~~--~~~~~----~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
++.. ....+ .+++++++..|+.++- -..+.||.|+....=..-+. -.++..-+.+.|+++|.+++..
T Consensus 329 a~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa- 407 (508)
T COG4262 329 ASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA- 407 (508)
T ss_pred hhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec-
Confidence 9833 22211 2468899999988753 23468999988542111111 2578889999999999999842
Q ss_pred eeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchhh
Q 018194 229 VTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWT 290 (359)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~ 290 (359)
.+.|.... .++ .+.+.+++|||.+.-.+.. .+.+..|--
T Consensus 408 --gs~y~tp~-----------------vfw---~i~aTik~AG~~~~Pyhv~-VPTFGeWGf 446 (508)
T COG4262 408 --GSPYFTPR-----------------VFW---RIDATIKSAGYRVWPYHVH-VPTFGEWGF 446 (508)
T ss_pred --CCCccCCc-----------------eee---eehhHHHhCcceeeeeEEe-cCcccccce
Confidence 11111110 111 3557789999988776655 344556643
No 230
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.40 E-value=2e-06 Score=68.79 Aligned_cols=100 Identities=23% Similarity=0.289 Sum_probs=72.1
Q ss_pred CCCCCEEEEECCCCChHHHHHHh-----hcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCCCCCCccc
Q 018194 120 VKAGDRILDVGCGVGGPMRAIAA-----HSRANVVGITINEYQVNRARLHNKKAG--LDSLCEVVCGNFLKMPFEDNHFD 192 (359)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD 192 (359)
..+..+|+|+|||.|.++..++. .++.+|+++|.++..++.+.++....+ +..++++..++..+... ....+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 36778999999999999999998 677899999999999999999988876 44567777776654322 45567
Q ss_pred eEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194 193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
+++..++-..+ -..+|+.+.+ |+-.+++
T Consensus 102 ~~vgLHaCG~L--s~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 102 ILVGLHACGDL--SDRALRLFIR---PNARFLV 129 (141)
T ss_pred EEEEeecccch--HHHHHHHHHH---cCCCEEE
Confidence 77765543322 2344555444 5555444
No 231
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.38 E-value=1.9e-05 Score=66.41 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=89.1
Q ss_pred hcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCcc
Q 018194 117 LIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHF 191 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~f 191 (359)
.+++.+|.+||-+|..+|....+++.- +...|++++.|+...+..-..+++. .||-.+..|+.... .--+..
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--E
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhcccccc
Confidence 457889999999999999999999884 3569999999996655544444432 58999999998632 112578
Q ss_pred ceEEecccccccCC-HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194 192 DGAYSIEATCHAPK-LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV 270 (359)
Q Consensus 192 D~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 270 (359)
|+|++.-+ .|+ ..-++.++...||+||.+++.--... .+....... ...+-.+.|++.
T Consensus 145 DvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~s--iD~t~~p~~----------------vf~~e~~~L~~~ 203 (229)
T PF01269_consen 145 DVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIKARS--IDSTADPEE----------------VFAEEVKKLKEE 203 (229)
T ss_dssp EEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHH--H-SSSSHHH----------------HHHHHHHHHHCT
T ss_pred cEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCc--ccCcCCHHH----------------HHHHHHHHHHHc
Confidence 99998654 234 45677888899999999988521111 111000000 012445678889
Q ss_pred CCeEEEEEec
Q 018194 271 GFEVVKEKDL 280 (359)
Q Consensus 271 GF~~i~~~~~ 280 (359)
||++++.-++
T Consensus 204 ~~~~~e~i~L 213 (229)
T PF01269_consen 204 GFKPLEQITL 213 (229)
T ss_dssp TCEEEEEEE-
T ss_pred CCChheEecc
Confidence 9999998877
No 232
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.36 E-value=2.8e-07 Score=77.13 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=60.8
Q ss_pred CCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CC--CC
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------FE--DN 189 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~--~~ 189 (359)
.+.+|||+||++|.|+..+.++. ..+|+|+|+.+.. . ..++.++++|+.+.. +. ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~-~~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------P-LQNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------c-ccceeeeecccchhhHHHhhhhhcccccc
Confidence 34899999999999999999865 4799999998761 1 134666677765421 11 26
Q ss_pred ccceEEecccccccC----C-------HHHHHHHHHhccCCCCEEEEE
Q 018194 190 HFDGAYSIEATCHAP----K-------LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~----~-------~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.+|+|++..+..... | ....+.-+...|+|||.+++-
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 899999987433221 1 234555566789999998874
No 233
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=6.4e-07 Score=83.40 Aligned_cols=101 Identities=23% Similarity=0.288 Sum_probs=87.6
Q ss_pred HHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHH
Q 018194 82 DIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRA 161 (359)
Q Consensus 82 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a 161 (359)
-.++...+-.|.+++.-.........+.+...+-++++++.+..+||+.||||.++..+++.. .+|+|++++++.++.|
T Consensus 343 ~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~-~~ViGvEi~~~aV~dA 421 (534)
T KOG2187|consen 343 YITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV-KRVIGVEISPDAVEDA 421 (534)
T ss_pred EEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc-cceeeeecChhhcchh
Confidence 456777788888888766666677778888899999999999999999999999999999864 5999999999999999
Q ss_pred HHHHHHcCCCCCeEEEEcCCCCC
Q 018194 162 RLHNKKAGLDSLCEVVCGNFLKM 184 (359)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~d~~~~ 184 (359)
+.++...|+. |++|+++-++++
T Consensus 422 ~~nA~~Ngis-Na~Fi~gqaE~~ 443 (534)
T KOG2187|consen 422 EKNAQINGIS-NATFIVGQAEDL 443 (534)
T ss_pred hhcchhcCcc-ceeeeecchhhc
Confidence 9999988875 899999977663
No 234
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.34 E-value=4.2e-06 Score=74.23 Aligned_cols=105 Identities=19% Similarity=0.268 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE 187 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 187 (359)
....+.+++.+.+.++..|||||+|+|.++..|++.. .+++++|+++.+++..+++.. ..++++++.+|+.++..+
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH
Confidence 4566778888888899999999999999999999975 799999999999999988765 246899999999998754
Q ss_pred C---CccceEEecccccccCCHHHHHHHHHhccCC
Q 018194 188 D---NHFDGAYSIEATCHAPKLEDVYAEVFRVLKP 219 (359)
Q Consensus 188 ~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkp 219 (359)
. +....|+++... + --..++.++...-+.
T Consensus 92 ~~~~~~~~~vv~NlPy-~--is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY-N--ISSPILRKLLELYRF 123 (262)
T ss_dssp GHCSSSEEEEEEEETG-T--GHHHHHHHHHHHGGG
T ss_pred HhhcCCceEEEEEecc-c--chHHHHHHHhhcccc
Confidence 3 344566665332 2 234566666663333
No 235
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.32 E-value=3.7e-06 Score=76.54 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-----cC----------------------------C-------
Q 018194 107 TRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-----SR----------------------------A------- 146 (359)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~----------------------------~------- 146 (359)
.+.+...++.+.+-.++..++|-=||+|.+.++.|.. || +
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 3455566777778888889999999999999887753 11 1
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc-cCC---HH----HHHHHHHhccC
Q 018194 147 NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH-APK---LE----DVYAEVFRVLK 218 (359)
Q Consensus 147 ~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~---~~----~~l~~~~~~Lk 218 (359)
.++|+|+++.+++.|+.++...|+.+.|+|.++|+..++-+-+.+|+|+|+-.-.- +.+ .. .+.+.+++.++
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 37799999999999999999999999999999999988644478999999864321 111 22 34445556666
Q ss_pred CCCEEEEE
Q 018194 219 PGSLYVSY 226 (359)
Q Consensus 219 pgG~l~~~ 226 (359)
--+..+++
T Consensus 336 ~ws~~v~t 343 (381)
T COG0116 336 GWSRYVFT 343 (381)
T ss_pred CCceEEEE
Confidence 66676663
No 236
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.25 E-value=1.1e-05 Score=74.69 Aligned_cols=100 Identities=12% Similarity=-0.004 Sum_probs=82.0
Q ss_pred CCEEEEECCCCChHHHHHHhhc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEeccc
Q 018194 123 GDRILDVGCGVGGPMRAIAAHS-R-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDNHFDGAYSIEA 199 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~~-~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~ 199 (359)
+.+|||+.||+|..+..++... + .+|+++|+++..++.++++.+..++. ++++.+.|+..+- .....||+|...-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 4689999999999999998862 3 59999999999999999999887664 6889999987642 1235799998854
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 200 TCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 200 l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
. ..+..++..+.+.+++||.+.++.
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 2 355689999999999999999863
No 237
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.25 E-value=1.1e-05 Score=66.90 Aligned_cols=104 Identities=23% Similarity=0.311 Sum_probs=85.0
Q ss_pred CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEecc
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGAYSIE 198 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v~~~~ 198 (359)
..|.+||+||-|-|.....+.+.+..+-+.++..|..+++.+...-. -.+||-...+-.++. .++++.||.|+..-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~--ek~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR--EKENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc--cccceEEEecchHhhhccccccCcceeEeec
Confidence 56889999999999999998887666778899999999887665322 246788888887773 27789999999876
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 199 ATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
--.+..|...+.+.+.|+|||+|++-..
T Consensus 178 y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 6577788999999999999999999764
No 238
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1.5e-05 Score=66.60 Aligned_cols=97 Identities=23% Similarity=0.241 Sum_probs=71.1
Q ss_pred CCCCCEEEEECCCCChHHHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCC
Q 018194 120 VKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------FEDN 189 (359)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~ 189 (359)
+.++++|+|||+-.|.|+..+++..+ ..|+++|+.|-- ..+++.++++|+..-+ +...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCCC
Confidence 46789999999999999999998644 359999997642 1246999999998754 3445
Q ss_pred ccceEEecccc--------cccCC---HHHHHHHHHhccCCCCEEEEEEe
Q 018194 190 HFDGAYSIEAT--------CHAPK---LEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 190 ~fD~v~~~~~l--------~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
.+|+|++..+- .|... -..++.-+..+|+|||.+++-.+
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 57999976543 22111 23566667789999999998543
No 239
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=1.7e-06 Score=68.23 Aligned_cols=144 Identities=19% Similarity=0.177 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCC-ChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEcCCCCC
Q 018194 110 HEEMAVDLIDVKAGDRILDVGCGV-GGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKA---GLDSLCEVVCGNFLKM 184 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~---~~~~~i~~~~~d~~~~ 184 (359)
+.-.+++....-.|.+||++|.|- |..+..+|.. +...|...|-++..++..++..... ++ ..+.....+....
T Consensus 17 la~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~-tsc~vlrw~~~~a 95 (201)
T KOG3201|consen 17 LAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSL-TSCCVLRWLIWGA 95 (201)
T ss_pred HHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccccc-ceehhhHHHHhhh
Confidence 334444444445678999999995 5555555653 5679999999999998877654332 11 1222222222221
Q ss_pred --CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHH
Q 018194 185 --PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAE 262 (359)
Q Consensus 185 --~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (359)
.....+||.|++...+..-.....+++.+.++|+|.|.-++...- .-.+.+.
T Consensus 96 qsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPR--------------------------Rg~sL~k 149 (201)
T KOG3201|consen 96 QSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPR--------------------------RGQSLQK 149 (201)
T ss_pred HHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCc--------------------------ccchHHH
Confidence 123468999999988766556778999999999999996663110 1124567
Q ss_pred HHHHHHhCCCeEEEEEec
Q 018194 263 ITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 263 ~~~~l~~aGF~~i~~~~~ 280 (359)
+.+.....||.++-.+++
T Consensus 150 F~de~~~~gf~v~l~eny 167 (201)
T KOG3201|consen 150 FLDEVGTVGFTVCLEENY 167 (201)
T ss_pred HHHHHHhceeEEEecccH
Confidence 778888999999877666
No 240
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.21 E-value=7.5e-06 Score=66.89 Aligned_cols=110 Identities=18% Similarity=0.185 Sum_probs=83.4
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH 190 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 190 (359)
.+++...-..-.|++|||+|+|+|..++..++.....|+..|+.|......+-+.+.++. ++.+...|... .+..
T Consensus 68 AR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~~~~ 142 (218)
T COG3897 68 ARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---SPPA 142 (218)
T ss_pred HHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---CCcc
Confidence 344555555567899999999999999888886556999999999988888887777764 48888888865 4578
Q ss_pred cceEEecccccccCCHHHHHHHHHhccCCCC-EEEEE
Q 018194 191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGS-LYVSY 226 (359)
Q Consensus 191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG-~l~~~ 226 (359)
||+++...++..-+.-..++. +.+.|+..| .+++.
T Consensus 143 ~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 143 FDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred eeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEe
Confidence 999999998876666667777 555555444 55543
No 241
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.18 E-value=3e-05 Score=68.27 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=67.0
Q ss_pred CCEEEEECCCCCh-HHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194 123 GDRILDVGCGVGG-PMRAIAAH--SRANVVGITINEYQVNRARLHNK-KAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE 198 (359)
Q Consensus 123 ~~~vLDiGcG~G~-~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~ 198 (359)
+.+|+=||||.=- .+..+++. .+..|+++|+++..++.+++... ..++..+++|+.+|..+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 4599999999754 44556653 45789999999999999999877 55677889999999987665456899998766
Q ss_pred ccc-ccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 199 ATC-HAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 199 ~l~-~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
... .-.+..++|.++.+.++||..+++-
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 443 2237899999999999999988873
No 242
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=0.00022 Score=58.81 Aligned_cols=140 Identities=17% Similarity=0.174 Sum_probs=96.3
Q ss_pred hcCCCCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccc
Q 018194 117 LIDVKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFD 192 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD 192 (359)
.+++.+|.+||=+|+-+|....+++.-.+ ..+++++.|+.+....-..+.+. +|+-.+..|+.... .--+..|
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhccccc
Confidence 45788999999999999999999998533 68999999998877666655553 57888999997632 1124689
Q ss_pred eEEecccccccCC-HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194 193 GAYSIEATCHAPK-LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG 271 (359)
Q Consensus 193 ~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 271 (359)
+|+..-+ .|+ ..-+..++...||+||.+++.--..+-........ + ..+-.+.|++.|
T Consensus 148 viy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~---v---------------f~~ev~kL~~~~ 206 (231)
T COG1889 148 VIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEE---V---------------FKDEVEKLEEGG 206 (231)
T ss_pred EEEEecC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHH---H---------------HHHHHHHHHhcC
Confidence 9887543 244 34566788999999998877432211110000000 0 123445688899
Q ss_pred CeEEEEEec
Q 018194 272 FEVVKEKDL 280 (359)
Q Consensus 272 F~~i~~~~~ 280 (359)
|++++.-++
T Consensus 207 f~i~e~~~L 215 (231)
T COG1889 207 FEILEVVDL 215 (231)
T ss_pred ceeeEEecc
Confidence 999998777
No 243
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.11 E-value=3.8e-05 Score=69.00 Aligned_cols=88 Identities=16% Similarity=0.087 Sum_probs=67.1
Q ss_pred CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA 199 (359)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 199 (359)
+.+|+++|||||++|.++..+.+. |.+|++||.++ |-... . -.++|.....|......+.+.+|.++|..+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~~L----~---~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQSL----M---DTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCHhh----h---CCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 468999999999999999999996 67999999654 21111 1 135788888888765433678999999764
Q ss_pred ccccCCHHHHHHHHHhccCCC
Q 018194 200 TCHAPKLEDVYAEVFRVLKPG 220 (359)
Q Consensus 200 l~~~~~~~~~l~~~~~~Lkpg 220 (359)
..+..+.+-+.+.|..|
T Consensus 280 ----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ----EKPARVAELMAQWLVNG 296 (357)
T ss_pred ----cCHHHHHHHHHHHHhcC
Confidence 46778888888888776
No 244
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=6.4e-05 Score=65.91 Aligned_cols=146 Identities=18% Similarity=0.272 Sum_probs=91.9
Q ss_pred CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHH---HHcC------------------------------
Q 018194 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHN---KKAG------------------------------ 169 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~------------------------------ 169 (359)
..+||--|||.|+++..|+.. |..+-|-+.|--|+-...=.. ...+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 458999999999999999984 556667787777653221111 0000
Q ss_pred ------CCCCeEEEEcCCCCCC---CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeee---CcccccC
Q 018194 170 ------LDSLCEVVCGNFLKMP---FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT---TDKYEAE 237 (359)
Q Consensus 170 ------~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~ 237 (359)
..+..+...||+.+.- -..+.||+|+.++.+....+.-+.|+.+..+|||||+.+=..... .+....
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~- 308 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGV- 308 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCC-
Confidence 0011122234444321 112479999998888877889999999999999999987422111 000000
Q ss_pred chHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCC
Q 018194 238 NKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKP 283 (359)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~ 283 (359)
.....--.+.+++..+.+.-||++++.+.+...
T Consensus 309 -------------~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~ 341 (369)
T KOG2798|consen 309 -------------ENEMSIELSLEDLKRVASHRGFEVEKERGIDTT 341 (369)
T ss_pred -------------cccccccccHHHHHHHHHhcCcEEEEeeeeecc
Confidence 000111246789999999999999998876443
No 245
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=98.08 E-value=0.00089 Score=61.92 Aligned_cols=159 Identities=16% Similarity=0.126 Sum_probs=86.9
Q ss_pred CCEEEEECCCCChHHHHHHh--------h--------cCCEEEEEeCCHHHHHHHHHHHHH--------------cCCC-
Q 018194 123 GDRILDVGCGVGGPMRAIAA--------H--------SRANVVGITINEYQVNRARLHNKK--------------AGLD- 171 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~--------~--------~~~~v~g~D~s~~~~~~a~~~~~~--------------~~~~- 171 (359)
..+|+|+|||+|..+..+.. + +..+|..-|+-.+-....-+.... .+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 56999999999987654421 1 235777777643221111111100 0000
Q ss_pred CCeEEEEcCCCCCCCCCCccceEEecccccccCC--------------------------------------HHHHHHHH
Q 018194 172 SLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPK--------------------------------------LEDVYAEV 213 (359)
Q Consensus 172 ~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~ 213 (359)
--+.-+.+.+..--||.++.+++++..++||+.. +..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012223444444488999999999999998752 11233444
Q ss_pred HhccCCCCEEEEEEeeeCcccccCch---H-----HHHHHhhhhc-C---------CCCC-CCCCHHHHHHHHHhCC-Ce
Q 018194 214 FRVLKPGSLYVSYEWVTTDKYEAENK---E-----HVDIIQGIER-G---------DALP-GLRSYAEITEIAKRVG-FE 273 (359)
Q Consensus 214 ~~~LkpgG~l~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~-~---------~~~~-~~~~~~~~~~~l~~aG-F~ 273 (359)
.+-|.|||++++.-............ . ....+..... | ..+| ...+.+|+++.+++.| |+
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 56689999999976555321111110 0 1111111111 1 1122 3568899999999888 77
Q ss_pred EEEEEecC
Q 018194 274 VVKEKDLA 281 (359)
Q Consensus 274 ~i~~~~~~ 281 (359)
+.+.+.+.
T Consensus 304 I~~le~~~ 311 (386)
T PLN02668 304 IDKLEVFK 311 (386)
T ss_pred eeeeEEee
Confidence 76666553
No 246
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.06 E-value=3.2e-05 Score=69.25 Aligned_cols=114 Identities=20% Similarity=0.321 Sum_probs=87.1
Q ss_pred HHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCC
Q 018194 113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FED 188 (359)
Q Consensus 113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~ 188 (359)
.....+...++.+|||++++.|.=+..+++.. ...|++.|+++..+...+++..+.|.. ++.....|..... ...
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~ 154 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPE 154 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHT
T ss_pred cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccc
Confidence 34455678899999999999999998888843 369999999999999999999999875 6777777776541 223
Q ss_pred CccceEEecc------cccccCC----------------HHHHHHHHHhcc----CCCCEEEEEE
Q 018194 189 NHFDGAYSIE------ATCHAPK----------------LEDVYAEVFRVL----KPGSLYVSYE 227 (359)
Q Consensus 189 ~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~L----kpgG~l~~~~ 227 (359)
..||.|+... ++..-|+ ..++|+++.+.+ ||||+++...
T Consensus 155 ~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 155 SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 4699998632 2222222 247899999999 9999999764
No 247
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.04 E-value=6.6e-05 Score=73.51 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=55.5
Q ss_pred CCCEEEEECCCCChHHHHHHhhc---------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHS---------RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE 187 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 187 (359)
.+.+|||.|||+|.+...++... ...++|+|+++..+..++.+....+ ...+.+...|..... -.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LLEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CCCceeeecccccccccccccc
Confidence 45699999999999998887632 2578999999999999998877654 123455555543321 11
Q ss_pred CCccceEEecccc
Q 018194 188 DNHFDGAYSIEAT 200 (359)
Q Consensus 188 ~~~fD~v~~~~~l 200 (359)
.+.||+|+++--.
T Consensus 110 ~~~fD~IIgNPPy 122 (524)
T TIGR02987 110 LDLFDIVITNPPY 122 (524)
T ss_pred cCcccEEEeCCCc
Confidence 2579999987543
No 248
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.01 E-value=1.2e-06 Score=66.39 Aligned_cols=99 Identities=18% Similarity=0.167 Sum_probs=45.6
Q ss_pred EEECCCCChHHHHHHhh--cC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEecccc
Q 018194 127 LDVGCGVGGPMRAIAAH--SR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGAYSIEAT 200 (359)
Q Consensus 127 LDiGcG~G~~~~~l~~~--~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v~~~~~l 200 (359)
||||+..|..+..+++. .. .+++++|+.+. .+..++..++.++..+++++.++..+. .++.++||+++.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 68999999998888763 22 37999999985 334444444456667899999999763 133578999998653
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 201 CHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
|..+.....+..+.+.|+|||.+++-+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 223456678899999999999998754
No 249
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.93 E-value=4.2e-05 Score=62.03 Aligned_cols=98 Identities=20% Similarity=0.172 Sum_probs=77.7
Q ss_pred CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc-
Q 018194 124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH- 202 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~- 202 (359)
+.+.|+|+|+|.++...++. .-+|++++.+|...+.|+++..-.|. .|++++.+|+.+..| ...|+|+|-..=..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHHh
Confidence 68999999999999877775 46999999999999999988755554 589999999999887 45699988542111
Q ss_pred -cCCHHHHHHHHHhccCCCCEEEE
Q 018194 203 -APKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 203 -~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
......+++.+...||-.+.++=
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hcccccHHHHHHHHHhhcCCcccc
Confidence 12456788888889999998874
No 250
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.93 E-value=0.00091 Score=61.30 Aligned_cols=161 Identities=18% Similarity=0.134 Sum_probs=80.8
Q ss_pred CCCCCEEEEECCCCChHHHHHHhh-----------------cCCEEEEEeCCHHHH-------HHHHHHHHHcCCCCCeE
Q 018194 120 VKAGDRILDVGCGVGGPMRAIAAH-----------------SRANVVGITINEYQV-------NRARLHNKKAGLDSLCE 175 (359)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~l~~~-----------------~~~~v~g~D~s~~~~-------~~a~~~~~~~~~~~~i~ 175 (359)
.....+|+|+||.+|..+..+... +..+|+--|+-.+=. ....+.... ..+--+.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~~~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-FRNYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-TTSEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-CceEEEE
Confidence 344579999999999988765421 114788888632211 111111111 1111133
Q ss_pred EEEcCCCCCCCCCCccceEEecccccccCCH---------------------------------------HHHHHHHHhc
Q 018194 176 VVCGNFLKMPFEDNHFDGAYSIEATCHAPKL---------------------------------------EDVYAEVFRV 216 (359)
Q Consensus 176 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~---------------------------------------~~~l~~~~~~ 216 (359)
-+.+.+..--+|.++.|++++..++||+... ..+|+.=.+-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 4456776656899999999999999987310 1233333456
Q ss_pred cCCCCEEEEEEeeeCcccccC--c----hHHHHHHhhhhcCCC----------CC-CCCCHHHHHHHHHhCC-CeEEEEE
Q 018194 217 LKPGSLYVSYEWVTTDKYEAE--N----KEHVDIIQGIERGDA----------LP-GLRSYAEITEIAKRVG-FEVVKEK 278 (359)
Q Consensus 217 LkpgG~l~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~l~~aG-F~~i~~~ 278 (359)
|+|||++++.-....+..... . ......+..+...+. +| ..++.+++++.+++.| |++...+
T Consensus 173 Lv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le 252 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLE 252 (334)
T ss_dssp EEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEE
T ss_pred eccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEE
Confidence 899999999766554411111 1 112222222211111 12 2568899999998777 8776666
Q ss_pred ecC
Q 018194 279 DLA 281 (359)
Q Consensus 279 ~~~ 281 (359)
.+.
T Consensus 253 ~~~ 255 (334)
T PF03492_consen 253 LFE 255 (334)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 251
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.92 E-value=0.00032 Score=58.86 Aligned_cols=128 Identities=17% Similarity=0.083 Sum_probs=93.9
Q ss_pred CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194 122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT 200 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 200 (359)
.+.++.||||-.+.+...+.+. +...+++.|+++..++.|.+.+.+.++.++++...+|-...--++..+|.|+...+-
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 3556999999999999999884 556999999999999999999999999999999999985532344579998877653
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194 201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~ 280 (359)
.. -....|.+-.+.|+.=-++++. +-....+++++|.+.+|+++...-+
T Consensus 96 G~--lI~~ILee~~~~l~~~~rlILQ-----------------------------Pn~~~~~LR~~L~~~~~~I~~E~il 144 (226)
T COG2384 96 GT--LIREILEEGKEKLKGVERLILQ-----------------------------PNIHTYELREWLSANSYEIKAETIL 144 (226)
T ss_pred HH--HHHHHHHHhhhhhcCcceEEEC-----------------------------CCCCHHHHHHHHHhCCceeeeeeee
Confidence 32 2456666666666543355541 1113457888888888887765433
No 252
>PRK10742 putative methyltransferase; Provisional
Probab=97.83 E-value=0.00013 Score=62.94 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=71.2
Q ss_pred HHHHHhcCCCCCC--EEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCCeEEEEcCC
Q 018194 112 EMAVDLIDVKAGD--RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA------G--LDSLCEVVCGNF 181 (359)
Q Consensus 112 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~------~--~~~~i~~~~~d~ 181 (359)
+.+++.++++++. +|||+-+|+|..+..++.. |++|+++|-++......+...... + +..+++++++|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 6688888888888 9999999999999999986 789999999999988887777663 2 224688888888
Q ss_pred CCCC-CCCCccceEEecccccc
Q 018194 182 LKMP-FEDNHFDGAYSIEATCH 202 (359)
Q Consensus 182 ~~~~-~~~~~fD~v~~~~~l~~ 202 (359)
.+.- -...+||+|+.--.+.|
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCC
Confidence 6642 12247999998776655
No 253
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.82 E-value=0.00013 Score=65.21 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=73.5
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---
Q 018194 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--- 185 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 185 (359)
+.+.+++.+.+.++..++|.-+|.|..+..+++. ++++|+|+|.++.+++.++++.... ..+++++++++.++.
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHL 85 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHH
Confidence 4466777788888999999999999999999885 3479999999999999999987654 357999999998753
Q ss_pred --CCCCccceEEeccccc
Q 018194 186 --FEDNHFDGAYSIEATC 201 (359)
Q Consensus 186 --~~~~~fD~v~~~~~l~ 201 (359)
...+++|.|+....+.
T Consensus 86 ~~~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 86 DELLVTKIDGILVDLGVS 103 (305)
T ss_pred HhcCCCcccEEEEeccCC
Confidence 2335799998876554
No 254
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.80 E-value=0.00034 Score=65.44 Aligned_cols=103 Identities=23% Similarity=0.322 Sum_probs=85.8
Q ss_pred CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccccc
Q 018194 124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA 203 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 203 (359)
.++|-+|||.-.++..+-+.....|+.+|+|+..++....+.... .+...+...|+..+.|++++||+|+....+.++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 499999999999998888754569999999999998887766422 345899999999999999999999999888876
Q ss_pred C-C---------HHHHHHHHHhccCCCCEEEEEEe
Q 018194 204 P-K---------LEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 204 ~-~---------~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
- + ....+.+++|+|+|||+++.+..
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 2 1 23567899999999999887655
No 255
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.75 E-value=0.00011 Score=58.78 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=49.4
Q ss_pred EEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 018194 125 RILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK 183 (359)
Q Consensus 125 ~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 183 (359)
.+||+|||.|..+..+++. ++.+|+++|+++.+.+.++++++..+++ ++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 4899999999999998875 4458999999999999999998877764 58888877765
No 256
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.75 E-value=0.00012 Score=57.38 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=74.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEecccccccC--C---------HHHHHHHH
Q 018194 147 NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDGAYSIEATCHAP--K---------LEDVYAEV 213 (359)
Q Consensus 147 ~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~--~---------~~~~l~~~ 213 (359)
+|+|+|+-+..++..+++..+.++.++++++..+=+.+. .+.+++|+++.+. .++| | -..+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 689999999999999999999998889999998877764 2335799987654 4554 2 34788999
Q ss_pred HhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 018194 214 FRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAK 282 (359)
Q Consensus 214 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~ 282 (359)
.++|+|||.+.++.+...+.-. .+.. ...++.+-|...-|.+.....+..
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~---eE~~----------------av~~~~~~L~~~~~~V~~~~~~N~ 128 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGK---EESE----------------AVEEFLASLDQKEFNVLKYQFINQ 128 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHH---HHHH----------------HHHHHHHTS-TTTEEEEEEEESS-
T ss_pred HHhhccCCEEEEEEeCCCCCCH---HHHH----------------HHHHHHHhCCcceEEEEEEEccCC
Confidence 9999999999987543321110 1111 112444445566788888777643
No 257
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.75 E-value=0.00049 Score=59.20 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=59.4
Q ss_pred CCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194 121 KAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA 199 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 199 (359)
.+..+|+|||||.=-++..+.. .++..++|+||+..+++.........+.+ .++...|...-+ +....|+.+..=+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~-~~~~~DlaLllK~ 180 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP-PKEPADLALLLKT 180 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH-TTSEESEEEEET-
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC-CCCCcchhhHHHH
Confidence 3467999999999888776655 45689999999999999999998887754 677788887653 4577899998877
Q ss_pred ccccC
Q 018194 200 TCHAP 204 (359)
Q Consensus 200 l~~~~ 204 (359)
++.+.
T Consensus 181 lp~le 185 (251)
T PF07091_consen 181 LPCLE 185 (251)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76664
No 258
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.0015 Score=55.54 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=90.5
Q ss_pred CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEec
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAYSI 197 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~ 197 (359)
.++..+||+|+-||.++..+.++...+|+++|..-.++..--+. -+.-+.+...|+..+. +. +..|++++.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 36789999999999999999997557999999998877653221 1222344555665543 32 367899887
Q ss_pred ccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCC----CCCCHHHHHHHHHhCCCe
Q 018194 198 EATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALP----GLRSYAEITEIAKRVGFE 273 (359)
Q Consensus 198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~aGF~ 273 (359)
-++. ....+|..+..+++|++-++..- .+.+. .- ...+..+.-.. +..-...+.+++++.||.
T Consensus 152 vSFI---SL~~iLp~l~~l~~~~~~~v~Lv---KPQFE----ag---r~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~ 218 (245)
T COG1189 152 VSFI---SLKLILPALLLLLKDGGDLVLLV---KPQFE----AG---REQVGKKGVVRDPKLHAEVLSKIENFAKELGFQ 218 (245)
T ss_pred eehh---hHHHHHHHHHHhcCCCceEEEEe---cchhh----hh---hhhcCcCceecCcchHHHHHHHHHHHHhhcCcE
Confidence 6643 56788999999999999887631 11111 10 01111111111 112346788899999999
Q ss_pred EEEEEe
Q 018194 274 VVKEKD 279 (359)
Q Consensus 274 ~i~~~~ 279 (359)
+.....
T Consensus 219 ~~gl~~ 224 (245)
T COG1189 219 VKGLIK 224 (245)
T ss_pred EeeeEc
Confidence 987643
No 259
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.64 E-value=0.00071 Score=61.28 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=71.6
Q ss_pred HhcCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-CCCCCCCCCccce
Q 018194 116 DLIDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN-FLKMPFEDNHFDG 193 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~fD~ 193 (359)
+...++||.+|+=+|+| .|..+..+|+..+++|+++|.|++-++.|++.-+ -.++... ......-.+.||+
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCcE
Confidence 34678899999999998 3457888888778999999999999999887632 2344432 2111111134899
Q ss_pred EEecccccccCCHHHHHHHHHhccCCCCEEEEEEee
Q 018194 194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV 229 (359)
Q Consensus 194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 229 (359)
|+..-. ...+....+.|++||+++++-..
T Consensus 233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 887543 55677888999999999987544
No 260
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=2.3e-05 Score=61.44 Aligned_cols=52 Identities=27% Similarity=0.378 Sum_probs=42.4
Q ss_pred EEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEE
Q 018194 175 EVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 175 ~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
++++-.....+|.+++.|+|++.++++|+. .-..+++++++.|||||++-+.
T Consensus 32 dlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 32 DLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred chhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 333333334578899999999999999986 5678999999999999999885
No 261
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.58 E-value=0.00095 Score=59.45 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=50.3
Q ss_pred CCEEEEECCCCChHHHHHH-hhcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCC-----CCCCCCccceEE
Q 018194 123 GDRILDVGCGVGGPMRAIA-AHSRANVVGITINEYQVNRARLHNKKA-GLDSLCEVVCGNFLK-----MPFEDNHFDGAY 195 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~-~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~-----~~~~~~~fD~v~ 195 (359)
..++||||||....-..|+ +..+.+++|.|+++..++.|++..+.. ++..+|+++...-.. +..+.+.||+..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 4689999999886544444 346899999999999999999999998 898999998664322 112346899999
Q ss_pred eccccccc
Q 018194 196 SIEATCHA 203 (359)
Q Consensus 196 ~~~~l~~~ 203 (359)
|+--++.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 98776643
No 262
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.54 E-value=0.00075 Score=61.79 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=84.9
Q ss_pred hcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCcc
Q 018194 117 LIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHF 191 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~f 191 (359)
.+..++|.||||.++-.|.=+.++|.. -...|++.|.+...+...+.++.+.|.. +.-....|...+| ++. +|
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~-~f 313 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPG-SF 313 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCc-cc
Confidence 456789999999999999988888763 2359999999999999999999999975 6677788887654 444 89
Q ss_pred ceEEecc------ccc------ccC----------CHHHHHHHHHhccCCCCEEEEEEeee
Q 018194 192 DGAYSIE------ATC------HAP----------KLEDVYAEVFRVLKPGSLYVSYEWVT 230 (359)
Q Consensus 192 D~v~~~~------~l~------~~~----------~~~~~l~~~~~~LkpgG~l~~~~~~~ 230 (359)
|-|+... ++. ... -..++|-....+++|||+|+......
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 9997432 111 111 13478888899999999998765433
No 263
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.00088 Score=54.51 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=65.2
Q ss_pred CCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCCC--------CCC
Q 018194 120 VKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-NFLKMP--------FED 188 (359)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~--------~~~ 188 (359)
+.|+.+|||+||..|.|+.-..+. |...|.|+|+-.-. . ++-+.++++ |+.+.. +|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p-~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------P-PEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------C-CCCcccccccccCCHHHHHHHHHhCCC
Confidence 467999999999999999877664 66899999984321 1 122455555 666531 466
Q ss_pred CccceEEecccccc----cCCHHH-------HHHHHHhccCCCCEEEEEEeee
Q 018194 189 NHFDGAYSIEATCH----APKLED-------VYAEVFRVLKPGSLYVSYEWVT 230 (359)
Q Consensus 189 ~~fD~v~~~~~l~~----~~~~~~-------~l~~~~~~LkpgG~l~~~~~~~ 230 (359)
...|+|++...-.. +.|... ++.-....++|+|.+++--|..
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 78899988654321 123333 3333456688999999855543
No 264
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.0011 Score=51.71 Aligned_cols=113 Identities=21% Similarity=0.302 Sum_probs=84.0
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 189 (359)
..+.++.++...+..+.+|+|+|.|......++..-...+|++++|-.+..++-+.-+.++...+.|..-|+....+.
T Consensus 60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~-- 137 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR-- 137 (199)
T ss_pred HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc--
Confidence 345567777777777999999999999988888643688999999999999999888888888899999999887654
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.|..|+...+-..++|.+ .+++.-|..+..++...
T Consensus 138 dy~~vviFgaes~m~dLe---~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 138 DYRNVVIFGAESVMPDLE---DKLRTELPANTRVVACR 172 (199)
T ss_pred ccceEEEeehHHHHhhhH---HHHHhhCcCCCeEEEEe
Confidence 355555544444445544 34444566677777643
No 265
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.47 E-value=0.0099 Score=52.57 Aligned_cols=151 Identities=11% Similarity=0.077 Sum_probs=94.0
Q ss_pred CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCC-C-------CCCCCccc
Q 018194 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG--LDSLCEVVCGNFLK-M-------PFEDNHFD 192 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~-~-------~~~~~~fD 192 (359)
...|+.+|||--.-...+....+..++=+|. |+.++.-++...+.+ .+.+.+++..|+.+ + .+..+..-
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 3479999999876666664323456666665 556666666666543 24578899999862 1 02223345
Q ss_pred eEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccC-ch-HHHHHHhhh--hcCCCCCCCCCHHHHHHH
Q 018194 193 GAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE-NK-EHVDIIQGI--ERGDALPGLRSYAEITEI 266 (359)
Q Consensus 193 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 266 (359)
++++-.++.+++ +...+|+.+.+...||+.+++ +.... .... .. ......... ..+..+....+++++.++
T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (260)
T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRP--LDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEW 237 (260)
T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-Eeccc--cchhHHHHHHHHHHHhhhcccccccccCCChhhHHHH
Confidence 778888888887 467899999998889988876 32222 1110 00 011111111 122333445678999999
Q ss_pred HHhCCCeEEEE
Q 018194 267 AKRVGFEVVKE 277 (359)
Q Consensus 267 l~~aGF~~i~~ 277 (359)
|++.||+....
T Consensus 238 l~~~Gw~~~~~ 248 (260)
T TIGR00027 238 LAERGWRASEH 248 (260)
T ss_pred HHHCCCeeecC
Confidence 99999998765
No 266
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.45 E-value=0.00055 Score=56.44 Aligned_cols=104 Identities=19% Similarity=0.323 Sum_probs=70.6
Q ss_pred CCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcC------CCCCeEEEEcCCCCC-C--CCCCccc
Q 018194 123 GDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAG------LDSLCEVVCGNFLKM-P--FEDNHFD 192 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~------~~~~i~~~~~d~~~~-~--~~~~~fD 192 (359)
.-.+.|||||.|.+...|+. +|..-+.|.+|-....+..++++.... .-.|+.+...++... | |..++.+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 45799999999999999997 577899999998888888888776543 124677777776653 2 2222222
Q ss_pred eEEecccccccCC--------HHHHHHHHHhccCCCCEEEEE
Q 018194 193 GAYSIEATCHAPK--------LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 193 ~v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~ 226 (359)
-.+..+--.|+.. -...+.+..-+|++||.++.+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 2222222222211 136788888999999998864
No 267
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.39 E-value=0.013 Score=50.35 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCccceEEec
Q 018194 122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE---DNHFDGAYSI 197 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~v~~~ 197 (359)
.|.+||-+|=..- .+..++. ....+|+.+|+++..++..++.+++.|++ |+.++.|+.+ |+| .++||++++.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~-~LP~~~~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRD-PLPEELRGKFDVFFTD 119 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TTTSS-BSEEEE-
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccc-cCCHHHhcCCCEEEeC
Confidence 5789999995433 3333333 34579999999999999999999999986 9999999987 333 3799999885
Q ss_pred ccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 018194 198 EATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKE 277 (359)
Q Consensus 198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~ 277 (359)
-. +...-..-++.+....||.-|...+..+...+ .... ...++++.+.+.||.+.+.
T Consensus 120 PP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~------~s~~----------------~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 120 PP-YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE------ASPD----------------KWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--------HH----------------HHHHHHHHHHTS--EEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHhCCCCceEEEEEecCc------CcHH----------------HHHHHHHHHHHCCcCHHHH
Confidence 32 22234567889999999977743332222110 0000 1136778888999998775
Q ss_pred E
Q 018194 278 K 278 (359)
Q Consensus 278 ~ 278 (359)
.
T Consensus 177 i 177 (243)
T PF01861_consen 177 I 177 (243)
T ss_dssp E
T ss_pred H
Confidence 3
No 268
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.31 E-value=0.00048 Score=64.73 Aligned_cols=95 Identities=18% Similarity=0.268 Sum_probs=63.7
Q ss_pred CEEEEECCCCChHHHHHHhhcCCEEEEEe--CCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCCccceEEecccc
Q 018194 124 DRILDVGCGVGGPMRAIAAHSRANVVGIT--INEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MPFEDNHFDGAYSIEAT 200 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D--~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~l 200 (359)
..|+|..+|.|+++..|.+.+ .-|.-+= ..+.-+...- ..|+ |-.. .|..+ ++.-+.+||+|++.+++
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~-VWVMNVVP~~~~ntL~vIy----dRGL---IG~y-hDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP-VWVMNVVPVSGPNTLPVIY----DRGL---IGVY-HDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred eeeeeecccccHHHHHhccCC-ceEEEecccCCCCcchhhh----hccc---chhc-cchhhccCCCCcchhheehhhhh
Confidence 589999999999999998753 2222221 1222333222 2233 2222 23332 44445899999999998
Q ss_pred cccC---CHHHHHHHHHhccCCCCEEEEEE
Q 018194 201 CHAP---KLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 201 ~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.... +...+|-++-|+|+|||.+++-|
T Consensus 438 s~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 8765 57899999999999999999853
No 269
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.21 E-value=0.0017 Score=54.58 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=57.0
Q ss_pred CCEEEEECCCCChHHHHHHhh-----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----C--CCCcc
Q 018194 123 GDRILDVGCGVGGPMRAIAAH-----SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----F--EDNHF 191 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~--~~~~f 191 (359)
++.|+|+|.-.|+.+..+|.. ..++|+|+|++...... +..+...+.++|+++++|..+.. . -....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 469999999999988777652 34799999996543322 22233345578999999998743 1 11112
Q ss_pred c-eEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194 192 D-GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 192 D-~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
+ ++++-.+-|...+....|+....+++||+++++.|.
T Consensus 111 ~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 111 HPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred CceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 3 233344444456788888999999999999998553
No 270
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.19 E-value=0.0094 Score=57.70 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=85.2
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS-----RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM 184 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 184 (359)
..+.+.+.+.+.+..+|+|..||+|.+.....+.. ...++|.|+++.....|+.+.--.|+..++....+|...-
T Consensus 174 v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~ 253 (489)
T COG0286 174 VSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN 253 (489)
T ss_pred HHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC
Confidence 44566677766777899999999999877766542 2679999999999999999888777754456666666554
Q ss_pred CC-----CCCccceEEeccccc---cc-------------------C--C-HHHHHHHHHhccCCCCEEEEE
Q 018194 185 PF-----EDNHFDGAYSIEATC---HA-------------------P--K-LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 185 ~~-----~~~~fD~v~~~~~l~---~~-------------------~--~-~~~~l~~~~~~LkpgG~l~~~ 226 (359)
|. ..+.||.|+++--+. +. + . ...+++.+...|+|||+..++
T Consensus 254 ~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 254 PKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred CcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 42 236799988865442 00 0 1 257899999999999866654
No 271
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.15 E-value=0.0019 Score=55.38 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=56.0
Q ss_pred HHHHHhcCCCCCC--EEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHH---HHHHHcCCC-----CCeEEEEcCC
Q 018194 112 EMAVDLIDVKAGD--RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR---LHNKKAGLD-----SLCEVVCGNF 181 (359)
Q Consensus 112 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~---~~~~~~~~~-----~~i~~~~~d~ 181 (359)
+.+++.++++++. +|||.-+|-|.-+..++. .|++|++++-||.+....+ ++.....-. .+++++++|.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~-~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLAS-LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHH-HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHc-cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 5577788888775 999999999999998886 5899999999998754443 333332211 3789999999
Q ss_pred CC-CCCCCCccceEEecccccc
Q 018194 182 LK-MPFEDNHFDGAYSIEATCH 202 (359)
Q Consensus 182 ~~-~~~~~~~fD~v~~~~~l~~ 202 (359)
.+ +..++++||+|+..-++.+
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 87 4456789999999777655
No 272
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.09 E-value=0.0059 Score=58.89 Aligned_cols=100 Identities=22% Similarity=0.255 Sum_probs=70.4
Q ss_pred CCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-----------CC--
Q 018194 120 VKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-----------MP-- 185 (359)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----------~~-- 185 (359)
..++.+|+=+|||. |..+...++..|+.|+++|.+++.++.+++. | .++...|..+ +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchh
Confidence 45789999999996 7777788887889999999999999888763 2 2322222211 00
Q ss_pred --------CCC--CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 186 --------FED--NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 186 --------~~~--~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+.+ ..+|+|+.......-+.+..+.+++.+.+||||.++..-
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 011 358999887654433345444699999999999988754
No 273
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0027 Score=56.81 Aligned_cols=109 Identities=16% Similarity=0.193 Sum_probs=67.7
Q ss_pred CCCEEEEECCCCChHHHHHHh-hcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCC-CCccceEEe
Q 018194 122 AGDRILDVGCGVGGPMRAIAA-HSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK--MPFE-DNHFDGAYS 196 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~-~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~-~~~fD~v~~ 196 (359)
...+|||+|.|.|.-...+-. .|. -.++.++.|+..-+......+... +........|+.. ++++ ...|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhccCCCccceeehhhh
Confidence 456899999999876655544 233 367778888877666655443322 1222233333322 1222 345777766
Q ss_pred cccccccCC---HHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194 197 IEATCHAPK---LEDVYAEVFRVLKPGSLYVSYEWVTT 231 (359)
Q Consensus 197 ~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~ 231 (359)
.+-|-+..+ ....++.++.++.|||.++++|-..+
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 665544432 44588999999999999999885554
No 274
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.96 E-value=0.0098 Score=51.56 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=70.6
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHH-----HHcCCCCCeEEEEcCCCCCC---CCCCc-cc
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHN-----KKAGLDSLCEVVCGNFLKMP---FEDNH-FD 192 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~-----~~~~~~~~i~~~~~d~~~~~---~~~~~-fD 192 (359)
...+||++|+|+|..+...+...+++|...|+...... .+... ....+...+.....+..+.+ +.... ||
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 35679999999998887777777889999998544332 22221 11122224555555554422 11223 99
Q ss_pred eEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194 193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
+|++..++.+-...+.++.-++..|..+|.+++
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEE
Confidence 999999999888889999999999999995554
No 275
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.024 Score=51.51 Aligned_cols=111 Identities=22% Similarity=0.228 Sum_probs=76.5
Q ss_pred hcCCCCCCEEEEECCCCChHHHHHHhhc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------
Q 018194 117 LIDVKAGDRILDVGCGVGGPMRAIAAHS-----RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------ 185 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------ 185 (359)
.++++|+.+|||+++-.|.=+..|.+.. ...|++-|.++..+........... .+++.+...|+...|
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-Ccceeeecccceecccccccc
Confidence 3578899999999999999887776631 1389999999998887777664333 345666666665544
Q ss_pred ---CCCCccceEEecc------cccccCC-----------------HHHHHHHHHhccCCCCEEEEEEe
Q 018194 186 ---FEDNHFDGAYSIE------ATCHAPK-----------------LEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 186 ---~~~~~fD~v~~~~------~l~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
.....||-|++.- .+.+.++ ...+|.+..++||+||.++-...
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 1224688887632 1111111 23688899999999999997643
No 276
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.89 E-value=0.0017 Score=58.14 Aligned_cols=88 Identities=24% Similarity=0.324 Sum_probs=61.8
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----
Q 018194 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---- 185 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 185 (359)
.+.+++.+...++..++|.--|.|+.+..+.+. ++++++|+|-++.+++.++++.... .+++.++++++.++.
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH
Confidence 455677777888999999999999999999874 5689999999999999998876543 467899998887753
Q ss_pred -C-CCCccceEEecccc
Q 018194 186 -F-EDNHFDGAYSIEAT 200 (359)
Q Consensus 186 -~-~~~~fD~v~~~~~l 200 (359)
. ....+|.|+....+
T Consensus 87 ~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 87 ELNGINKVDGILFDLGV 103 (310)
T ss_dssp HTTTTS-EEEEEEE-S-
T ss_pred HccCCCccCEEEEcccc
Confidence 2 33577888765543
No 277
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.88 E-value=0.018 Score=48.25 Aligned_cols=136 Identities=17% Similarity=0.184 Sum_probs=74.3
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcC--CEEEEEeCCHHHHHHHHHHH
Q 018194 89 GQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSR--ANVVGITINEYQVNRARLHN 165 (359)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~--~~v~g~D~s~~~~~~a~~~~ 165 (359)
|.-.+..++.|.-..+-+.+...+. +..+.-..+-++.|-+||.|.+..-+.- +.. ..|++-|+++.+++.|+++.
T Consensus 19 G~VL~sApG~p~FPVRLAsEi~qR~-l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 19 GRVLYSAPGFPAFPVRLASEIFQRA-LHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp TTSS--BTTB----HHHHHHHHHHH-HCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred CeEEecCCCCCCccHHHHHHHHHHH-HHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 3444556666666666666555443 3444445567999999999998766653 211 48999999999999998774
Q ss_pred H-----------------------------------------HcCCCCCeEEEEcCCCCCC-----CCCCccceEEeccc
Q 018194 166 K-----------------------------------------KAGLDSLCEVVCGNFLKMP-----FEDNHFDGAYSIEA 199 (359)
Q Consensus 166 ~-----------------------------------------~~~~~~~i~~~~~d~~~~~-----~~~~~fD~v~~~~~ 199 (359)
. ..|-.....+.+.|+.+.. ......|+|+...-
T Consensus 98 ~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlP 177 (246)
T PF11599_consen 98 SLLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLP 177 (246)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--
T ss_pred hhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCC
Confidence 1 1111223677888887721 11233599988665
Q ss_pred ccccCC---------HHHHHHHHHhccCCCCEEEE
Q 018194 200 TCHAPK---------LEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 200 l~~~~~---------~~~~l~~~~~~LkpgG~l~~ 225 (359)
..++.+ ..++|..++.+|-+++++.+
T Consensus 178 YG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 178 YGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEE
T ss_pred CcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEE
Confidence 554443 35799999999944444444
No 278
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.79 E-value=0.011 Score=52.29 Aligned_cols=90 Identities=22% Similarity=0.266 Sum_probs=73.1
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 018194 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-- 185 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 185 (359)
+.+.++..+.+.++...+|.--|.|+.+..+.+..+ .+++|+|-++.+++.|+++....+ +++.+++.++.++.
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEA 88 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHH
Confidence 456677788888999999999999999999988543 689999999999999999987754 68999999988754
Q ss_pred ---CCCCccceEEeccccc
Q 018194 186 ---FEDNHFDGAYSIEATC 201 (359)
Q Consensus 186 ---~~~~~fD~v~~~~~l~ 201 (359)
...+.+|.|+....+.
T Consensus 89 l~~~~i~~vDGiL~DLGVS 107 (314)
T COG0275 89 LKELGIGKVDGILLDLGVS 107 (314)
T ss_pred HHhcCCCceeEEEEeccCC
Confidence 2345788887765443
No 279
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.72 E-value=0.00062 Score=50.63 Aligned_cols=85 Identities=16% Similarity=0.290 Sum_probs=44.0
Q ss_pred ccceEEecccccccC------CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHH
Q 018194 190 HFDGAYSIEATCHAP------KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEI 263 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (359)
.||+|+|..+.-++. -...+++.+++.|+|||.+++ |.-....|.............+..- . ..++++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~~~~~~~~~~n~~~i----~-lrP~~F 74 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKAKRLSEEIRENYKSI----K-LRPDQF 74 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTTTTS-HHHHHHHHH---------GGGH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHHhhhhHHHHhHHhce----E-EChHHH
Confidence 489999998877652 267899999999999999998 3222111221111111111111110 1 134567
Q ss_pred HHHHHh--CCCeEEEEEec
Q 018194 264 TEIAKR--VGFEVVKEKDL 280 (359)
Q Consensus 264 ~~~l~~--aGF~~i~~~~~ 280 (359)
.+.|.+ .||...+....
T Consensus 75 ~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 75 EDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp HHHHTSTTT---EEEEE--
T ss_pred HHHHHhcccceEEEEEccc
Confidence 787776 69998875444
No 280
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.58 E-value=0.023 Score=53.51 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=71.8
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-CCC-C-CC-CCC
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN-FLK-M-PF-EDN 189 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~-~-~~-~~~ 189 (359)
....+.++.+||.+|||. |..+..+++..+. +++++|.+++.++.+++.. +. ..+.+...+ ... + .+ ...
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCC
Confidence 445677889999999987 8888888887676 6999999999998887652 11 111111111 100 0 11 223
Q ss_pred ccceEEeccc---------------ccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 190 HFDGAYSIEA---------------TCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 190 ~fD~v~~~~~---------------l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.+|+|+-.-. ++-.++....+.++.+.|+|+|.+++..
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 6888876431 1112455778999999999999998863
No 281
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.54 E-value=0.055 Score=48.34 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=71.7
Q ss_pred HHhcCCCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CCC------
Q 018194 115 VDLIDVKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF--LKM------ 184 (359)
Q Consensus 115 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~------ 184 (359)
.++...++|.+||-+|+|+ |..+...|+..| .+|+.+|+++..++.|++. |-. .+....... .++
T Consensus 162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~----Ga~-~~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF----GAT-VTDPSSHKSSPQELAELVEK 236 (354)
T ss_pred hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh----CCe-EEeeccccccHHHHHHHHHh
Confidence 4456788999999999996 777777777555 5999999999999999983 211 111111111 110
Q ss_pred CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194 185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 231 (359)
Q Consensus 185 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 231 (359)
.+....+|+.+-... .+..++.....+|+||.+++..|...
T Consensus 237 ~~g~~~~d~~~dCsG------~~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCSG------AEVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred hccccCCCeEEEccC------chHHHHHHHHHhccCCEEEEeccCCC
Confidence 022345788776543 34567777889999999888776654
No 282
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.45 E-value=0.02 Score=52.98 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=63.6
Q ss_pred cCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194 118 IDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY 195 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~ 195 (359)
....++.+||-.|||. |..+..+++..|+ +|+++|.+++.++.+++. |...-+.....++.+.....+.+|+|+
T Consensus 165 ~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 165 AGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEE
Confidence 3445788999999863 5677777877676 699999999998887653 221101111112211111123588887
Q ss_pred ecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
-.-. . ...+....+.|+|||+++++.
T Consensus 241 d~~G-----~-~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EVSG-----H-PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ECCC-----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 5432 1 346778889999999999864
No 283
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.42 E-value=0.046 Score=51.83 Aligned_cols=117 Identities=12% Similarity=0.108 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCCCC---CCEEEEECCCCChHHHHHHh---h--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 018194 107 TRLHEEMAVDLIDVKA---GDRILDVGCGVGGPMRAIAA---H--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC 178 (359)
Q Consensus 107 ~~~~~~~~~~~~~~~~---~~~vLDiGcG~G~~~~~l~~---~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~ 178 (359)
++.....+..+.+... -..|+-+|+|-|-+.....+ . -..++++++-+|+++-..+.+ ....+..+|+++.
T Consensus 349 q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~Vtii~ 427 (649)
T KOG0822|consen 349 QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNRVTIIS 427 (649)
T ss_pred HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCeeEEEe
Confidence 3344444444433221 34788899999987765543 1 236899999999998777663 3334567899999
Q ss_pred cCCCCCCCCCCccceEEecccccccCC---HHHHHHHHHhccCCCCEEEE
Q 018194 179 GNFLKMPFEDNHFDGAYSIEATCHAPK---LEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 179 ~d~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~ 225 (359)
.|+..++.|..+.|++++- .|..+.| -.++|.-+.+.|||.|+.+=
T Consensus 428 ~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 428 SDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred ccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 9999998556889998863 3444433 46899999999999988763
No 284
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.38 E-value=0.011 Score=51.83 Aligned_cols=109 Identities=18% Similarity=0.275 Sum_probs=81.0
Q ss_pred CCCCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC--CCCCCccc
Q 018194 119 DVKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKA--GL-DSLCEVVCGNFLKM--PFEDNHFD 192 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~--~~~~~~fD 192 (359)
.+...++||-||.|.|...+..+++.. ..+.-+|++...++..++..... +. .+++....+|-..+ ....++||
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 445668999999999999999988733 38899999999999888876643 11 35788888886553 14478999
Q ss_pred eEEecccccccC----CHHHHHHHHHhccCCCCEEEEEE
Q 018194 193 GAYSIEATCHAP----KLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 193 ~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+|+.-..=.-.| -....+..+.+.|||||+++...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 998754322222 14567888999999999998753
No 285
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.37 E-value=0.097 Score=48.57 Aligned_cols=98 Identities=17% Similarity=0.164 Sum_probs=67.8
Q ss_pred CCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-----CCCC-Cc
Q 018194 120 VKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M-----PFED-NH 190 (359)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-----~~~~-~~ 190 (359)
..++.+|+=+|||+ |.++..+++..+ .+|+.+|.++..++.|++.... ........+ . .... ..
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-------~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-------DVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-------eEeecCccccHHHHHHHHhCCCC
Confidence 34455999999997 778788888655 6999999999999999885321 211111111 0 1112 36
Q ss_pred cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194 191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT 230 (359)
Q Consensus 191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 230 (359)
+|+++-.-. ...++..+.+.++|||.+++.-...
T Consensus 239 ~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 239 ADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 899876544 3458899999999999999875443
No 286
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.35 E-value=0.017 Score=49.17 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=71.6
Q ss_pred HhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHH----HHHHHHHHHHcCCCCCeEEEEcCCCCCC---C
Q 018194 116 DLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQ----VNRARLHNKKAGLDSLCEVVCGNFLKMP---F 186 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~----~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~ 186 (359)
..+.++||.+||-+|+++|....++..- +..-|++++.|+.. +..|+++ .||-.+..|+.... .
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRm 222 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRM 222 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheee
Confidence 4567899999999999999998888874 44689999998754 4444443 47778888887621 1
Q ss_pred CCCccceEEecccccccCCHH-HHHHHHHhccCCCCEEEEEE
Q 018194 187 EDNHFDGAYSIEATCHAPKLE-DVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~ 227 (359)
.-.-.|+|++.-. -||.. -+.-+....||+||.+++.-
T Consensus 223 lVgmVDvIFaDva---qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 223 LVGMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eeeeEEEEeccCC---CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 1235677776443 23433 34456778899999999853
No 287
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.34 E-value=0.014 Score=54.32 Aligned_cols=102 Identities=17% Similarity=0.073 Sum_probs=77.0
Q ss_pred CCCEEEEECCCCChHHHHHHhh-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCC-CCCCccceEEec
Q 018194 122 AGDRILDVGCGVGGPMRAIAAH-SR-ANVVGITINEYQVNRARLHNKKAGLDS-LCEVVCGNFLKMP-FEDNHFDGAYSI 197 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~-~~~~~fD~v~~~ 197 (359)
.+.+|||.=+|+|.=+..++.. .+ .+|+.-|+|++.++..+++.+..++.+ ++++.+.|+..+- .....||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4569999999999988777765 33 599999999999999999999998887 6889898987642 246789999653
Q ss_pred ccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 198 EATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
- +..+..+|..+.+.++.||.+.+..
T Consensus 129 P----fGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 P----FGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred C----CCCccHhHHHHHHHhhcCCEEEEec
Confidence 2 3467899999999999999999864
No 288
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.021 Score=51.89 Aligned_cols=97 Identities=12% Similarity=-0.044 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-----c----CCEEEEEeCCHHHHHHHHHHHHHcCCCCC
Q 018194 103 HRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-----S----RANVVGITINEYQVNRARLHNKKAGLDSL 173 (359)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~----~~~v~g~D~s~~~~~~a~~~~~~~~~~~~ 173 (359)
+.+....+.-.+.+.+..+....++|+|.|+|.++..+.+. | .+++..|++|+...+.=+++.+... ..
T Consensus 58 FGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~--~~ 135 (370)
T COG1565 58 FGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE--DL 135 (370)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc--cc
Confidence 44445555555555566666779999999999999888763 2 4799999999999888777766432 11
Q ss_pred eEEEEcCCCCCCCCCCccceEEecccccccC
Q 018194 174 CEVVCGNFLKMPFEDNHFDGAYSIEATCHAP 204 (359)
Q Consensus 174 i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 204 (359)
+.+ ......+|.+-.-+|+++..+..+|
T Consensus 136 ~~~---~~~~e~~p~~~~~i~~~NElfDAlP 163 (370)
T COG1565 136 IRW---VEWVEDLPKKFPGIVVSNELFDALP 163 (370)
T ss_pred hhH---HHHHHhccccCceEEEechhhcccc
Confidence 111 1111112333234566666666655
No 289
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.26 E-value=0.03 Score=56.64 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCChHHHHHHh-h-------c-----CCEEEEEeCCH---HHHHHHH-----------HHHHH-----cC
Q 018194 122 AGDRILDVGCGVGGPMRAIAA-H-------S-----RANVVGITINE---YQVNRAR-----------LHNKK-----AG 169 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~-~-------~-----~~~v~g~D~s~---~~~~~a~-----------~~~~~-----~~ 169 (359)
+.-+|+|+|-|+|.......+ . + ..+++.+|..| +.+..+. +.... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346999999999985544432 1 2 24888999643 3333322 11111 11
Q ss_pred C------CC--CeEEEEcCCCCC-CCCCCccceEEeccc-ccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccC
Q 018194 170 L------DS--LCEVVCGNFLKM-PFEDNHFDGAYSIEA-TCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE 237 (359)
Q Consensus 170 ~------~~--~i~~~~~d~~~~-~~~~~~fD~v~~~~~-l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 237 (359)
+ .. ++++..+|+.+. +--...+|+++.... -..-|+ -..+++.+.++++|||.+.-+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t---------- 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT---------- 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee----------
Confidence 1 01 345667787652 211256899987542 112222 2589999999999999998421
Q ss_pred chHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 018194 238 NKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKE 277 (359)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~ 277 (359)
+...++..|.++||++...
T Consensus 207 ---------------------~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 207 ---------------------SAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ---------------------hHHHHHHHHHHcCCeeeec
Confidence 2346778888888887653
No 290
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.23 E-value=0.0096 Score=54.93 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=52.7
Q ss_pred CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194 124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM 184 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 184 (359)
..|||||+|||.++...++..+-.|++++.-..|.+.|++...+.|+.++|.++.---.+.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 3689999999999987777655689999999999999999999999999999887665554
No 291
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.93 E-value=0.0029 Score=55.38 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=63.7
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHH-------HHHH--HcCCCCCeEEEEcCCCCCCC-CCC--
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR-------LHNK--KAGLDSLCEVVCGNFLKMPF-EDN-- 189 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~-------~~~~--~~~~~~~i~~~~~d~~~~~~-~~~-- 189 (359)
.+++|||+|||.|.............+...|.|.+.++... .... ......-......+..+..+ ..+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~ 195 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERT 195 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcccc
Confidence 57899999999999888887754478888888887763211 0000 00000001112221111111 113
Q ss_pred ccceEEecccccccCCHHHH-HHHHHhccCCCCEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDV-YAEVFRVLKPGSLYVS 225 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~-l~~~~~~LkpgG~l~~ 225 (359)
.||+|.+...+...+....+ ......++++.|.+++
T Consensus 196 ~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred chhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 78999998888777666665 6667778889998876
No 292
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.92 E-value=0.11 Score=47.49 Aligned_cols=97 Identities=24% Similarity=0.321 Sum_probs=65.9
Q ss_pred hcCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCC
Q 018194 117 LIDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM------PFEDN 189 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~ 189 (359)
...+.++.+||..|+| .|..+..+++..+++|++++.++...+.+++. +.. .+..+-... .....
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~----g~~----~~~~~~~~~~~~~~~~~~~~ 231 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL----GAD----EVLNSLDDSPKDKKAAGLGG 231 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----CCC----EEEcCCCcCHHHHHHHhcCC
Confidence 3456788899998876 37788888887788999999999988877542 321 111111110 12345
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.+|+|+.... ....++++.+.|+++|.++...
T Consensus 232 ~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 232 GFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CceEEEECCC------CHHHHHHHHHHhhcCCEEEEEC
Confidence 6898875421 2457888999999999998753
No 293
>PHA01634 hypothetical protein
Probab=95.89 E-value=0.065 Score=40.98 Aligned_cols=47 Identities=15% Similarity=-0.030 Sum_probs=41.0
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA 168 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~ 168 (359)
.+.+|+|||++.|..+..++-.....|+++++++...+..++.++..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 47899999999999999988765569999999999999998877654
No 294
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=95.88 E-value=0.42 Score=44.71 Aligned_cols=113 Identities=15% Similarity=0.178 Sum_probs=68.0
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCh----HHHHHHhh----cCCEEEEEeC----CHHHHHHHHHHHH----HcCCCCCeE
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGG----PMRAIAAH----SRANVVGITI----NEYQVNRARLHNK----KAGLDSLCE 175 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~----~~~~v~g~D~----s~~~~~~a~~~~~----~~~~~~~i~ 175 (359)
+.|++.+.-....+|+|+|.|.|. +...|+.+ |..+||+|+. +...++...++.. ..|++ .+
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fe 177 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FE 177 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EE
Confidence 456666665667799999999996 44455554 3369999999 7777777666543 34655 44
Q ss_pred EEEc---CCCCCC-----CCCCccceEEecccccccCC--------HHHHHHHHHhccCCCCEEEEEEe
Q 018194 176 VVCG---NFLKMP-----FEDNHFDGAYSIEATCHAPK--------LEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 176 ~~~~---d~~~~~-----~~~~~fD~v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
|... +.+++. ...+..=+|.+.+.+||+.+ ...+|+. .+.|+|. .++++|.
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~-vvv~~E~ 244 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPK-VVVLVEQ 244 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCC-EEEEEee
Confidence 4442 233321 22233335556677788752 2345554 4578998 4444443
No 295
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.85 E-value=0.034 Score=53.63 Aligned_cols=97 Identities=21% Similarity=0.221 Sum_probs=67.7
Q ss_pred CCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-----------C--C-
Q 018194 121 KAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-----------M--P- 185 (359)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----------~--~- 185 (359)
.++.+|+=+|||. |..+..+++..|+.|+++|.++..++.++.. | .+++..|..+ + +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----G----a~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----G----AEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEeccccccccccccceeecCHHH
Confidence 4578999999996 6677777777788999999999987777652 2 2333333211 0 0
Q ss_pred -------CC--CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194 186 -------FE--DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 186 -------~~--~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
++ -..+|+|+..-.+..-+.+.-+.+++.+.+|||+.++=
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 11 24689998876555555565678889999999998773
No 296
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.82 E-value=0.038 Score=46.84 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=57.2
Q ss_pred CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCCCCC-----CCCccceE
Q 018194 122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKA-GLDSLCEVVCGNFLKMPF-----EDNHFDGA 194 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~-----~~~~fD~v 194 (359)
++.++||||.|.-..--.+-. ..+.+.+|.|+++..++.|+...... ++...|+.....-.+--| ..+.||++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 456899999997654433333 25789999999999999999988766 565566665433222112 25789999
Q ss_pred Eecccccc
Q 018194 195 YSIEATCH 202 (359)
Q Consensus 195 ~~~~~l~~ 202 (359)
.|+-.+|.
T Consensus 158 lCNPPFh~ 165 (292)
T COG3129 158 LCNPPFHD 165 (292)
T ss_pred ecCCCcch
Confidence 99987764
No 297
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.77 E-value=0.012 Score=49.55 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=64.0
Q ss_pred CEEEEECCCCChHHHHHHhhc-------C---CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------
Q 018194 124 DRILDVGCGVGGPMRAIAAHS-------R---ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-------- 185 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~~~-------~---~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------- 185 (359)
.+++|+++..|.|+..|.+.. + ..|++||+.+-. .++ .|.-+++|+....
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~-GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIE-GVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccC-ceEEeecccCCHhHHHHHHHH
Confidence 589999999999999888731 1 139999985432 222 4677899998743
Q ss_pred CCCCccceEEecccc-----cccCC------HHHHHHHHHhccCCCCEEEE
Q 018194 186 FEDNHFDGAYSIEAT-----CHAPK------LEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 186 ~~~~~fD~v~~~~~l-----~~~~~------~~~~l~~~~~~LkpgG~l~~ 225 (359)
|..+..|+|+|..+- |.+.+ ...+|.-...+|||||.|+.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 556789999997743 32322 23456667789999999984
No 298
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.62 E-value=0.048 Score=49.62 Aligned_cols=56 Identities=27% Similarity=0.321 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARL 163 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~ 163 (359)
+++.+.+.+..+..+-..|+|+|.|.|.+++.++-..+..|.+||-|....++|++
T Consensus 139 ~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 139 RRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 34444455555556667999999999999999998788999999999877776654
No 299
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.59 E-value=0.052 Score=47.85 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=50.2
Q ss_pred CCEEEEECCCCChHHHHHHhh-----c----CCEEEEEeCCHHHHHHHHHHHHHc-----CCCCCeEEEEcCCCCCCCCC
Q 018194 123 GDRILDVGCGVGGPMRAIAAH-----S----RANVVGITINEYQVNRARLHNKKA-----GLDSLCEVVCGNFLKMPFED 188 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~-----~----~~~v~g~D~s~~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~ 188 (359)
..+|+|+|+|+|.++..+.+. + ..+++.+|+||.+.+.-+++.... ....+|.+ ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 469999999999999988763 1 268999999999988888776542 12334555 23443332
Q ss_pred CccceEEecccccccC
Q 018194 189 NHFDGAYSIEATCHAP 204 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~ 204 (359)
..-+|+++.++..+|
T Consensus 95 -~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 -FPGFIIANELFDALP 109 (252)
T ss_dssp -CCEEEEEESSGGGS-
T ss_pred -CCEEEEEeeehhcCc
Confidence 345677777776665
No 300
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.45 E-value=0.62 Score=42.00 Aligned_cols=162 Identities=10% Similarity=0.059 Sum_probs=96.8
Q ss_pred HHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCC----CC
Q 018194 114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG--LDSLCEVVCGNFLKMP----FE 187 (359)
Q Consensus 114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~----~~ 187 (359)
+.+.+.-. ...|+-+|||--.-...+-...+..|+-+|. |+.++.=++.+++.+ .+...+++..|+.+.. +.
T Consensus 85 ~~~~~~~g-~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~ 162 (297)
T COG3315 85 VRAALDAG-IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALA 162 (297)
T ss_pred HHHHHHhc-ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHH
Confidence 33344333 4689999999654444443323467777776 666666666666654 2346899999998533 22
Q ss_pred -----CCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCc-hHHHHHHhhh--hcCCCCCCC
Q 018194 188 -----DNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN-KEHVDIIQGI--ERGDALPGL 257 (359)
Q Consensus 188 -----~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~ 257 (359)
.+.--++++-+++.+++ ...++|..+...+.||-.++.............. .......... ..+......
T Consensus 163 ~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 242 (297)
T COG3315 163 AAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFG 242 (297)
T ss_pred hcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceecc
Confidence 33444788888999987 3678999999999998888764321111111110 0000111100 001111223
Q ss_pred CCHHHHHHHHHhCCCeEEEE
Q 018194 258 RSYAEITEIAKRVGFEVVKE 277 (359)
Q Consensus 258 ~~~~~~~~~l~~aGF~~i~~ 277 (359)
....++..+|.+.||.....
T Consensus 243 ~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 243 DDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred CCHHHHHHHHHhcCEEEEec
Confidence 45789999999999998765
No 301
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.43 E-value=0.034 Score=44.41 Aligned_cols=132 Identities=21% Similarity=0.139 Sum_probs=75.7
Q ss_pred CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHH-HHHHHHHcCCCCCeEEEEcCCCC-CCCCCCccceEEecccc
Q 018194 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNR-ARLHNKKAGLDSLCEVVCGNFLK-MPFEDNHFDGAYSIEAT 200 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~-a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~l 200 (359)
+++++-+|+..-..-....++..++|..++.++--++. .+.+. .++...|+.. +.--.++||.+.|..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHhhccchhhheechh
Confidence 56788888875444333334444678888876422111 01110 1122222211 11124789999999999
Q ss_pred cccC--------C---HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194 201 CHAP--------K---LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR 269 (359)
Q Consensus 201 ~~~~--------~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (359)
+|.. | ....+.++.++|||||.+++......+..... ....+.+..+..++
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fN----------------ahRiYg~~rL~mm~-- 135 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFN----------------AHRIYGPIRLAMMF-- 135 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEe----------------cceeecHhHHHHHh--
Confidence 9872 2 24788899999999999998654433221110 11334444555544
Q ss_pred CCCeEEEEEec
Q 018194 270 VGFEVVKEKDL 280 (359)
Q Consensus 270 aGF~~i~~~~~ 280 (359)
.||+.+.....
T Consensus 136 ~gfe~i~tfs~ 146 (177)
T PF03269_consen 136 YGFEWIDTFSG 146 (177)
T ss_pred CCcEEEeeecc
Confidence 59999987654
No 302
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.41 E-value=0.23 Score=45.61 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=63.4
Q ss_pred hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194 117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY 195 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~ 195 (359)
...++++.+||=.|+|. |..+..+++..|++|++++.+++.++.+++. |.. .++ |..+. ..+.+|+++
T Consensus 160 ~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~----Ga~---~vi--~~~~~--~~~~~d~~i 228 (329)
T TIGR02822 160 RASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL----GAA---SAG--GAYDT--PPEPLDAAI 228 (329)
T ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh----CCc---eec--ccccc--CcccceEEE
Confidence 45778899999999763 5566677777788999999999888777664 322 111 11111 123578765
Q ss_pred ecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
..... ...+....+.|++||+++++-
T Consensus 229 ~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 229 LFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 43321 246888899999999998864
No 303
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.38 E-value=0.017 Score=51.73 Aligned_cols=82 Identities=24% Similarity=0.332 Sum_probs=62.9
Q ss_pred HHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHH-------HHHHHHHcCC-CCCeEEEEcCCCCCCC
Q 018194 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNR-------ARLHNKKAGL-DSLCEVVCGNFLKMPF 186 (359)
Q Consensus 115 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~-------a~~~~~~~~~-~~~i~~~~~d~~~~~~ 186 (359)
+......||+-|+|--.|||.+....|.. |+.|+|.||+-.++.. .+.+++..|. +.-+.+..+|....++
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~F-Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAHF-GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL 279 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhhh-cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcch
Confidence 34456789999999999999998887774 8899999999888872 3456666663 3346788899888664
Q ss_pred -CCCccceEEec
Q 018194 187 -EDNHFDGAYSI 197 (359)
Q Consensus 187 -~~~~fD~v~~~ 197 (359)
....||+|+|.
T Consensus 280 rsn~~fDaIvcD 291 (421)
T KOG2671|consen 280 RSNLKFDAIVCD 291 (421)
T ss_pred hhcceeeEEEeC
Confidence 34589999984
No 304
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.33 E-value=0.077 Score=46.66 Aligned_cols=96 Identities=22% Similarity=0.242 Sum_probs=62.7
Q ss_pred CCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccc
Q 018194 119 DVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFEDNHFD 192 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD 192 (359)
.+.++.+||..|+|+ |..+..+++..+.+|++++.++...+.+++. +.. .++...-.+. ....+.+|
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD---HVIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc---eeccCCcCCHHHHHHHhcCCCCC
Confidence 347889999999986 6666777776788999999998877776543 211 1111110000 01235689
Q ss_pred eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+++.... . ...+..+.+.|+++|.++...
T Consensus 204 ~vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 204 VVIDAVG-----G-PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEECCC-----C-HHHHHHHHHhcccCCEEEEEc
Confidence 9886432 1 145677889999999998753
No 305
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.30 E-value=0.24 Score=45.93 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=61.3
Q ss_pred CCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeC---CHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194 120 VKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITI---NEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY 195 (359)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~---s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~ 195 (359)
..++.+||-+|+|. |.++..+++..+++|++++. ++..++.+++. |.. .+.....+..+. ...+.+|+|+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~----Ga~-~v~~~~~~~~~~-~~~~~~d~vi 243 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL----GAT-YVNSSKTPVAEV-KLVGEFDLII 243 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc----CCE-EecCCccchhhh-hhcCCCCEEE
Confidence 56788999999874 66777788877889999986 67766666542 321 111111111110 0124588887
Q ss_pred ecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194 196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
-.-. -...+.+..+.|++||.++++..
T Consensus 244 d~~g------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 244 EATG------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ECcC------CHHHHHHHHHHccCCcEEEEEec
Confidence 6432 12367888999999999987643
No 306
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.24 E-value=0.067 Score=47.55 Aligned_cols=97 Identities=19% Similarity=0.132 Sum_probs=74.8
Q ss_pred CEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc
Q 018194 124 DRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH 202 (359)
Q Consensus 124 ~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 202 (359)
.+|.-||.|. |..+..+|--.++.|+.+|+|...++.....+. .+++..-.+..++...-...|+++..-.+.-
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence 4788899885 778888887778999999999988887766543 3566666666554433457899988766666
Q ss_pred cCCHHHHHHHHHhccCCCCEEEE
Q 018194 203 APKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 203 ~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
...|.-+.+++...+|||+.++=
T Consensus 244 akaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEE
Confidence 66788899999999999998874
No 307
>PRK13699 putative methylase; Provisional
Probab=95.16 E-value=0.062 Score=46.51 Aligned_cols=51 Identities=29% Similarity=0.412 Sum_probs=34.6
Q ss_pred EEEEcCCCCC--CCCCCccceEEeccccc----c-----c--C---C-HHHHHHHHHhccCCCCEEEE
Q 018194 175 EVVCGNFLKM--PFEDNHFDGAYSIEATC----H-----A--P---K-LEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 175 ~~~~~d~~~~--~~~~~~fD~v~~~~~l~----~-----~--~---~-~~~~l~~~~~~LkpgG~l~~ 225 (359)
++.++|+.+. .++++++|+|+..--.. . + . + ....+.+++|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 5667777654 46788888888752111 0 0 0 1 24788999999999998876
No 308
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=0.21 Score=45.60 Aligned_cols=101 Identities=16% Similarity=0.054 Sum_probs=76.8
Q ss_pred CCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEecccc
Q 018194 123 GDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF-EDNHFDGAYSIEAT 200 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l 200 (359)
..+|+|.=+|+|.=++.++...+. +|+.-|+||+.++.++++...+. ..+...+..|+..+-. ....||+|=..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~~~~~v~n~DAN~lm~~~~~~fd~IDiD--- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-GEDAEVINKDANALLHELHRAFDVIDID--- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-cccceeecchHHHHHHhcCCCccEEecC---
Confidence 679999999999988888875454 99999999999999999988762 2345666677765432 13678877432
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194 201 CHAPKLEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
-+..+..++....+.++.||.+.+...
T Consensus 129 -PFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 129 -PFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred -CCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 133677889999999999999998643
No 309
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.94 E-value=0.3 Score=40.31 Aligned_cols=105 Identities=12% Similarity=0.097 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCChHHHHHHh---hcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCC
Q 018194 122 AGDRILDVGCGVGGPMRAIAA---HSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-------FEDN 189 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~---~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~ 189 (359)
.+..|+|+|.-.|..+...|. ..| .+|+++|++-..++.+-.. .+.|.|++++-.+.. ...+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 346899999999988777765 244 7999999987665544322 246999999988743 1223
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCc
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTD 232 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 232 (359)
.--+.++..+-|+.......|+-..++|.-|-++++.+....+
T Consensus 143 y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 143 YPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred CCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 2344455666666666677788888999999999987655443
No 310
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.93 E-value=0.47 Score=44.32 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=64.0
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCC
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFED 188 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~ 188 (359)
....+.++.+||=.|+|. |..+..+++..|+ +|+++|.++..++.+++. |.. .++..+-.+. ....
T Consensus 185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~~~ 257 (371)
T cd08281 185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GAT---ATVNAGDPNAVEQVRELTG 257 (371)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCc---eEeCCCchhHHHHHHHHhC
Confidence 445677889999999863 5566777776777 699999999988887653 321 1221111110 0112
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+.+|+|+-.-. -...+....+.|++||+++++.
T Consensus 258 ~g~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 258 GGVDYAFEMAG------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCCCEEEECCC------ChHHHHHHHHHHhcCCEEEEEc
Confidence 35888875321 1346777889999999998753
No 311
>PRK11524 putative methyltransferase; Provisional
Probab=94.92 E-value=0.12 Score=46.49 Aligned_cols=46 Identities=24% Similarity=0.185 Sum_probs=40.2
Q ss_pred CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK 167 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~ 167 (359)
.+|+.|||.-||+|..+....+ .+-+.+|+|++++.++.|++|+..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHh
Confidence 5799999999999988876555 578999999999999999999753
No 312
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.85 E-value=0.19 Score=44.92 Aligned_cols=98 Identities=20% Similarity=0.137 Sum_probs=62.0
Q ss_pred hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCC-C-C-CCCCc
Q 018194 117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVC-GNFLK-M-P-FEDNH 190 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~-~-~-~~~~~ 190 (359)
.....++.+||=+|+|. |..+..+++..+++ |+++|.++..++.+++. |.. .++. .+..+ . . .....
T Consensus 115 ~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 115 AAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT---ALAEPEVLAERQGGLQNGRG 187 (280)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc---EecCchhhHHHHHHHhCCCC
Confidence 34455889999998863 55667777766775 99999999888777653 221 1111 01000 0 0 11235
Q ss_pred cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+|+|+-.-. -...++...+.|+|+|+++++-
T Consensus 188 ~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 188 VDVALEFSG------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCEEEECCC------ChHHHHHHHHHhcCCCEEEEec
Confidence 888865321 2346788899999999999864
No 313
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=1.1 Score=38.66 Aligned_cols=125 Identities=10% Similarity=0.125 Sum_probs=76.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCC
Q 018194 99 PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-----SRANVVGITINEYQVNRARLHNKKAGLDSL 173 (359)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~ 173 (359)
|..+-....+.+...+... ..+...+|+|+|+-.-++.|.+. .-..++.+|+|...++..-+.....-..-.
T Consensus 58 pTRtEaaIl~~~a~Eia~~---~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~ 134 (321)
T COG4301 58 PTRTEAAILQARAAEIASI---TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE 134 (321)
T ss_pred CchhHHHHHHHHHHHHHHh---hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe
Confidence 3333333344444444444 44779999999999877777652 126899999999988654443333222223
Q ss_pred eEEEEcCCCCC-C-CCCCcc-ceEEecccccccC--CHHHHHHHHHhccCCCCEEEEE
Q 018194 174 CEVVCGNFLKM-P-FEDNHF-DGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 174 i~~~~~d~~~~-~-~~~~~f-D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+.-+.+|.+.. . ++...= =.++....+..+. +-..+|..++..|+||-++++-
T Consensus 135 v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 135 VNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 55566776541 1 222211 2233444555553 4668999999999999999873
No 314
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=94.57 E-value=0.27 Score=45.12 Aligned_cols=93 Identities=27% Similarity=0.395 Sum_probs=60.6
Q ss_pred CCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC---CCCCCCCCCccceEE
Q 018194 121 KAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN---FLKMPFEDNHFDGAY 195 (359)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~fD~v~ 195 (359)
.++.+||-.|||. |..+..+++..|. ++++++.++...+.+++. +.. .++..+ ........+.+|+++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCCccEEE
Confidence 3788999998875 6677777777777 899999998888765543 221 122111 111111123589887
Q ss_pred ecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.... ....++.+.+.|+++|+++.+
T Consensus 237 d~~g------~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASG------APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred ECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 6432 134578889999999999865
No 315
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.51 E-value=0.43 Score=44.33 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=63.6
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CC
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----P-FE 187 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~ 187 (359)
....+.++.+||-.|||. |..+..+++..|+ +|+++|.++...+.+++. |.. .++...-.+. . ..
T Consensus 170 ~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~i~~~~~ 242 (358)
T TIGR03451 170 NTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GAT---HTVNSSGTDPVEAIRALTG 242 (358)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEEcCCCcCHHHHHHHHhC
Confidence 344677899999998864 5667777887777 599999999988887543 321 1221111110 0 12
Q ss_pred CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
...+|+|+-.-. . ...+....+.+++||+++++.
T Consensus 243 ~~g~d~vid~~g-----~-~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 243 GFGADVVIDAVG-----R-PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCCCEEEECCC-----C-HHHHHHHHHHhccCCEEEEEC
Confidence 235888875322 2 245677888999999998754
No 316
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.49 E-value=0.098 Score=46.75 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=49.6
Q ss_pred EEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--CCccceEEecc
Q 018194 125 RILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE--DNHFDGAYSIE 198 (359)
Q Consensus 125 ~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~v~~~~ 198 (359)
+++|+-||.|.++..+.+. |. .+.++|+++..++..+.++.. ....+|+.++... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCC
Confidence 7999999999998888764 44 577899999999888776531 2567777776422 35699998765
No 317
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.47 E-value=0.12 Score=47.55 Aligned_cols=102 Identities=18% Similarity=0.156 Sum_probs=63.2
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCCCcc
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-FEDNHF 191 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~f 191 (359)
..+.+.++.+||=+|+|. |..+..+++..+++ |+++|.+++..+.+++. |...-+.....+...+ . .....+
T Consensus 157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 157 RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCC
Confidence 445677899999998763 55666777777787 99999999888777543 3211011111110000 0 122368
Q ss_pred ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
|+|+-... -...+....+.|+++|+++++.
T Consensus 233 d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 233 DVAIECSG------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 98875332 2335567788999999998754
No 318
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.47 E-value=0.024 Score=49.87 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=73.4
Q ss_pred CCEEEEECCCCChHHH-HHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194 123 GDRILDVGCGVGGPMR-AIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC 201 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~-~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 201 (359)
+..|+|+=+|.|+++. .+.......|+++|.+|..++..++.++..+..+++..+.+|-... -+....|.|....
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~-~~~~~AdrVnLGL--- 270 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP-KPRLRADRVNLGL--- 270 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc-Cccccchheeecc---
Confidence 4789999999999998 5555444699999999999999999888877777777888887664 3456778776543
Q ss_pred ccCCHHHHHHHHHhccCCCC--EEEEEE
Q 018194 202 HAPKLEDVYAEVFRVLKPGS--LYVSYE 227 (359)
Q Consensus 202 ~~~~~~~~l~~~~~~LkpgG--~l~~~~ 227 (359)
+|.-++-.-.+..+|||.| .+-+.+
T Consensus 271 -lPSse~~W~~A~k~Lk~eggsilHIHe 297 (351)
T KOG1227|consen 271 -LPSSEQGWPTAIKALKPEGGSILHIHE 297 (351)
T ss_pred -ccccccchHHHHHHhhhcCCcEEEEec
Confidence 4554444555667777744 444443
No 319
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.46 E-value=0.21 Score=45.95 Aligned_cols=127 Identities=20% Similarity=0.243 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHH-------HHHHHHcCC-
Q 018194 100 GKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRA-------RLHNKKAGL- 170 (359)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a-------~~~~~~~~~- 170 (359)
.+...+.+......+.+.+.+.+++...|+|.|.|.+...++...++ .-+|+++....-+.+ ++...-.|-
T Consensus 170 s~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~ 249 (419)
T KOG3924|consen 170 SETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK 249 (419)
T ss_pred ccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC
Confidence 34455666666777888889999999999999999999988876443 556666543322222 122222333
Q ss_pred CCCeEEEEcCCCCCCC---CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 171 DSLCEVVCGNFLKMPF---EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 171 ~~~i~~~~~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+..+..+++++.+..+ -....++|+++.+... |+..--+.++..-+++|-+++-.+
T Consensus 250 ~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 250 PNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred cCceeecccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccc
Confidence 4567888888876321 1245688888776542 445555568999999999998643
No 320
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.42 E-value=0.1 Score=40.48 Aligned_cols=86 Identities=20% Similarity=0.138 Sum_probs=59.9
Q ss_pred CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCccceEEecccccccCC
Q 018194 132 GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----P-FEDNHFDGAYSIEATCHAPK 205 (359)
Q Consensus 132 G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~v~~~~~l~~~~~ 205 (359)
|.|..+..+++..|++|+++|.++..++.+++. |- ..++..+-.+. . .+...+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEecC------
Confidence 357788899997789999999999998888764 21 12333322211 0 23347899876532
Q ss_pred HHHHHHHHHhccCCCCEEEEEEeee
Q 018194 206 LEDVYAEVFRVLKPGSLYVSYEWVT 230 (359)
Q Consensus 206 ~~~~l~~~~~~LkpgG~l~~~~~~~ 230 (359)
-...++....+|+|||+++++....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2578899999999999999875443
No 321
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.38 E-value=0.15 Score=43.74 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=36.3
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARL 163 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~ 163 (359)
+.+++.. ..+|..|||.-||+|..+....+ .+-+.+|+|+++..++.|++
T Consensus 182 ~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~-l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 182 ERLIKAS-TNPGDIVLDPFAGSGTTAVAAEE-LGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHH-S-TT-EEEETT-TTTHHHHHHHH-TT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHhh-hccceeeehhhhccChHHHHHHH-cCCeEEEEeCCHHHHHHhcC
Confidence 3344433 35689999999999988876655 57899999999999998864
No 322
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.32 E-value=0.81 Score=37.45 Aligned_cols=128 Identities=16% Similarity=0.115 Sum_probs=73.4
Q ss_pred ECCCCChHHHHHHhh-c-CCEEEEE--eCCHHHHHHHH---HHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEec
Q 018194 129 VGCGVGGPMRAIAAH-S-RANVVGI--TINEYQVNRAR---LHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYSI 197 (359)
Q Consensus 129 iGcG~G~~~~~l~~~-~-~~~v~g~--D~s~~~~~~a~---~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~ 197 (359)
||=|.-.++..|++. . +..+++. |...+..+... .+.....-..-.-....|+.++. .....||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 344444566666664 2 3455554 44333333222 33332211111234456776654 256889999988
Q ss_pred ccccc-----cC-C-------HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHH
Q 018194 198 EATCH-----AP-K-------LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEIT 264 (359)
Q Consensus 198 ~~l~~-----~~-~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (359)
+...- -. + ...+++.+..+|+++|.+.+.-.... .| +.=.+.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~-py------------------------~~W~i~ 137 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ-PY------------------------DSWNIE 137 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-CC------------------------ccccHH
Confidence 75332 00 1 34788999999999999998522111 10 111566
Q ss_pred HHHHhCCCeEEEEEecC
Q 018194 265 EIAKRVGFEVVKEKDLA 281 (359)
Q Consensus 265 ~~l~~aGF~~i~~~~~~ 281 (359)
++.+++||..++...+.
T Consensus 138 ~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 138 ELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHhcCCEEEEEecCC
Confidence 88889999999987764
No 323
>PRK13699 putative methylase; Provisional
Probab=94.29 E-value=0.25 Score=42.79 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=40.7
Q ss_pred CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA 168 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~ 168 (359)
.+|+.|||.-||+|..+....+ .+.+++|+|+++...+.+.++....
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHH
Confidence 4788999999999988877665 4789999999999999999988654
No 324
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.21 E-value=0.35 Score=45.66 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=63.1
Q ss_pred HHHHHhcCC-CCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194 112 EMAVDLIDV-KAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189 (359)
Q Consensus 112 ~~~~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 189 (359)
+.+.+..++ .+|.+|+=+|||. |......++..|++|+++|.++.....|+.. |. ... +..+. -.
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G~----~~~--~~~e~---v~ 256 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----GY----EVM--TMEEA---VK 256 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----CC----EEc--cHHHH---Hc
Confidence 444454433 4789999999996 6666666666788999999999887776542 32 211 11111 13
Q ss_pred ccceEEecccccccCCHHHHHHH-HHhccCCCCEEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAE-VFRVLKPGSLYVSYE 227 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~-~~~~LkpgG~l~~~~ 227 (359)
.+|+|+..-. . ..++.. ..+.+|+||+++..-
T Consensus 257 ~aDVVI~atG-----~-~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 257 EGDIFVTTTG-----N-KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCCEEEECCC-----C-HHHHHHHHHhcCCCCcEEEEeC
Confidence 4698876421 2 334554 589999999998753
No 325
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=93.96 E-value=0.18 Score=47.39 Aligned_cols=109 Identities=16% Similarity=0.119 Sum_probs=66.7
Q ss_pred CCCEEEEECCCCCh--HHHHHH-hhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCC--CCC-CCCccceE
Q 018194 122 AGDRILDVGCGVGG--PMRAIA-AHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-NFLK--MPF-EDNHFDGA 194 (359)
Q Consensus 122 ~~~~vLDiGcG~G~--~~~~l~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~--~~~-~~~~fD~v 194 (359)
..+.++|+|.|.|. ++..+. ....-.++.||.|..|........... -...-.++.. .+.. +|. ..+.||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~-~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDG-SHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcCh-hhcCchhccccchhcccCCCCcccceeeE
Confidence 34678889888765 333222 223468999999999998887765541 0000111111 1111 232 34569999
Q ss_pred EecccccccCCH---HHHHHH-HHhccCCCCEEEEEEeeeC
Q 018194 195 YSIEATCHAPKL---EDVYAE-VFRVLKPGSLYVSYEWVTT 231 (359)
Q Consensus 195 ~~~~~l~~~~~~---~~~l~~-~~~~LkpgG~l~~~~~~~~ 231 (359)
++.+.++++.+. ..+.++ .++..++|+.+++++-..+
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999998742 333333 4566789999999875443
No 326
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.60 E-value=0.063 Score=50.60 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=81.9
Q ss_pred CCCCEEEEECCCCChHHHHHHhh-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceE
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAH-SR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGA 194 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v 194 (359)
.++.+|||.=|++|.-++..++. ++ .+|++.|.++..++..+++.+..+..+.++..+.|+..+- -....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 45679999999999988888874 33 4899999999999999998888777777788888886642 234789998
Q ss_pred EecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
-..- ...+..+|..+.+.++.||.+.+..
T Consensus 188 DLDP----yGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 DLDP----YGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ecCC----CCCccHHHHHHHHHhhcCCEEEEEe
Confidence 6522 2356789999999999999999864
No 327
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.58 E-value=0.6 Score=43.06 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=60.2
Q ss_pred CCCCCCEEEEECCCC-ChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194 119 DVKAGDRILDVGCGV-GGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY 195 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~ 195 (359)
...++.+||-+|||. |.++..+++. . +.+|+++|.++..++.+++ .+. .....+ +. ....+|+|+
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~----~~~~~~---~~-~~~g~d~vi 227 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE----TYLIDD---IP-EDLAVDHAF 227 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc----eeehhh---hh-hccCCcEEE
Confidence 456799999999874 5555666663 3 4689999999988887764 111 111111 11 112478887
Q ss_pred ecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
-.-. . +.....+....++|++||+++++-
T Consensus 228 D~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 228 ECVG--G-RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ECCC--C-CccHHHHHHHHHhCcCCcEEEEEe
Confidence 4322 1 113457888999999999998864
No 328
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.53 E-value=1.3 Score=37.42 Aligned_cols=109 Identities=23% Similarity=0.172 Sum_probs=66.9
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCh--HHHHHH---hhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGG--PMRAIA---AHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MP 185 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~--~~~~l~---~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~ 185 (359)
++|..+..-.....++++.|+.|. .+..|+ ++.+.++++|-+++..+...++.....++.+.++|+.++..+ +.
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~ 110 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVM 110 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHH
Confidence 334444433445678999766443 344443 357889999999988888888888888877777999988533 21
Q ss_pred CCCCccceEEecccccccCCHHHHHHHHHhc--cCCCCEEEEE
Q 018194 186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRV--LKPGSLYVSY 226 (359)
Q Consensus 186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~--LkpgG~l~~~ 226 (359)
..-...|+++... +.+++.+++.+. +.|.|-+++.
T Consensus 111 ~~~~~iDF~vVDc------~~~d~~~~vl~~~~~~~~GaVVV~ 147 (218)
T PF07279_consen 111 PGLKGIDFVVVDC------KREDFAARVLRAAKLSPRGAVVVC 147 (218)
T ss_pred hhccCCCEEEEeC------CchhHHHHHHHHhccCCCceEEEE
Confidence 1124578776643 223333333333 4455766654
No 329
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.50 E-value=0.57 Score=43.77 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=41.9
Q ss_pred HHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHH
Q 018194 114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNK 166 (359)
Q Consensus 114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~ 166 (359)
-.+.+.+.++++||-|.+|.......+...| .+|++||+||.++...+-+.+
T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCNALDYLLAGP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHHhCCCCCCeEEEEccCCchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 4567889999999999988777666666654 699999999999887766544
No 330
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.48 E-value=1.2 Score=40.53 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=64.5
Q ss_pred HHhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCC-----CC
Q 018194 115 VDLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF-LKM-----PF 186 (359)
Q Consensus 115 ~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~-----~~ 186 (359)
.....+.++.+||=.|+ |.|..+..+++..|++|++++.+++..+.+++ .|.. .++..+- ... ..
T Consensus 131 ~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~ 203 (325)
T TIGR02825 131 LEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD---VAFNYKTVKSLEETLKKA 203 (325)
T ss_pred HHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeccccccHHHHHHHh
Confidence 34556788999998884 46778888888778899999999888777654 2321 1221111 011 01
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..+.+|+|+-... ...+....++|++||+++.+
T Consensus 204 ~~~gvdvv~d~~G-------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 204 SPDGYDCYFDNVG-------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CCCCeEEEEECCC-------HHHHHHHHHHhCcCcEEEEe
Confidence 1245888875321 12457889999999999975
No 331
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=93.36 E-value=0.53 Score=43.56 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=65.2
Q ss_pred HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc----CCCC-C-CCC
Q 018194 116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG----NFLK-M-PFE 187 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~----d~~~-~-~~~ 187 (359)
....+.+|.+||=.|+ |.|..+..+++..|++|++++.++...+.+++. .|.. .++.. +..+ + ...
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~ 225 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD---EAFNYKEEPDLDAALKRYF 225 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC---EEEECCCcccHHHHHHHHC
Confidence 3456788999999998 367788888987789999999998877766532 2322 12211 1111 0 011
Q ss_pred CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.+.+|+|+-.-. ...+..+.++|++||+++++-
T Consensus 226 ~~gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 226 PEGIDIYFDNVG-------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CCCcEEEEECCC-------HHHHHHHHHHhccCCEEEEEC
Confidence 235888875322 246788899999999998753
No 332
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.34 E-value=0.42 Score=43.42 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=57.0
Q ss_pred CCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194 122 AGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA 199 (359)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 199 (359)
++.+||=+|||. |.++..+++..|++ |+++|.++..++.+... . ++ |..+. ....+|+|+-.-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--~~~g~Dvvid~~G 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD--PRRDYRAIYDASG 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--cCCCCCEEEECCC
Confidence 577899999874 66777888876775 67789888777665432 0 11 11110 1245888875432
Q ss_pred ccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 200 TCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 200 l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
-...+..+.+.|+|||+++++-
T Consensus 210 ------~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 210 ------DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ------CHHHHHHHHHhhhcCcEEEEEe
Confidence 2346788889999999999864
No 333
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.30 E-value=0.16 Score=37.74 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=25.8
Q ss_pred CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeC
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITI 153 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~ 153 (359)
.+....+|||||.|.+...|.+. |-.-.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE-GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC-CCCcccccc
Confidence 34568999999999999888774 567788886
No 334
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=93.16 E-value=0.22 Score=44.59 Aligned_cols=105 Identities=18% Similarity=0.204 Sum_probs=69.7
Q ss_pred CCEEEEECCCCChHHHHHHhhc---------------------CCEEEEEeCCHH--HHHHHHHHHHHc----------C
Q 018194 123 GDRILDVGCGVGGPMRAIAAHS---------------------RANVVGITINEY--QVNRARLHNKKA----------G 169 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~~---------------------~~~v~g~D~s~~--~~~~a~~~~~~~----------~ 169 (359)
..+||-||.|.|.=...++... ...++.||+.+- .++.....+... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999986433333211 148999999653 344433333222 0
Q ss_pred C------CCCeEEEEcCCCCCCCCC-------CccceEEecccccc-----cCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 170 L------DSLCEVVCGNFLKMPFED-------NHFDGAYSIEATCH-----APKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 170 ~------~~~i~~~~~d~~~~~~~~-------~~fD~v~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+ .-++.|.+.|+..+..++ ...|+|...+.+.- ++.-.++|.++-..++||-.++++|
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 0 126889999998875321 25688877776543 3456789999999999999999986
No 335
>PTZ00357 methyltransferase; Provisional
Probab=92.96 E-value=0.64 Score=45.95 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=65.1
Q ss_pred CEEEEECCCCChHHHHHHh---h--cCCEEEEEeCCHHHHHHHHHHH-HHcCC-------CCCeEEEEcCCCCCCCCC--
Q 018194 124 DRILDVGCGVGGPMRAIAA---H--SRANVVGITINEYQVNRARLHN-KKAGL-------DSLCEVVCGNFLKMPFED-- 188 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~---~--~~~~v~g~D~s~~~~~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~~-- 188 (359)
..|+-+|+|-|-+.....+ . ...+|++|+-++........+. ....+ .+.|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 3689999999987655543 2 2368999999966433333332 22233 245899999999975331
Q ss_pred ---------CccceEEecccccccCC---HHHHHHHHHhccCC----CCE
Q 018194 189 ---------NHFDGAYSIEATCHAPK---LEDVYAEVFRVLKP----GSL 222 (359)
Q Consensus 189 ---------~~fD~v~~~~~l~~~~~---~~~~l~~~~~~Lkp----gG~ 222 (359)
+.+|+|++ ..|.-+.| -.++|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36899987 33444433 45888888888887 776
No 336
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.91 E-value=0.3 Score=42.60 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh----h--cCCEEEEEeCCH--------------------------
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA----H--SRANVVGITINE-------------------------- 155 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~--~~~~v~g~D~s~-------------------------- 155 (359)
..+.+.+...+...-...|+|+||-.|..+..++. . .+-+++++|.-+
T Consensus 60 ~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~ 139 (248)
T PF05711_consen 60 DNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLA 139 (248)
T ss_dssp HHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCT
T ss_pred HHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccc
Confidence 33334344444333345899999999987765543 1 245788887411
Q ss_pred HHHHHHHHHHHHcCC-CCCeEEEEcCCCC-CC-CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 156 YQVNRARLHNKKAGL-DSLCEVVCGNFLK-MP-FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 156 ~~~~~a~~~~~~~~~-~~~i~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
..++..++++...++ .+++.++.+.+.+ +| .+...+-++..-. ........+|..++..|.|||++++-|
T Consensus 140 ~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlYesT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 140 VSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLYESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp HHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred cCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec--cchHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 134445555555553 4589999999866 23 2223222222211 111235689999999999999999844
No 337
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.84 E-value=0.68 Score=42.83 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=61.5
Q ss_pred hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-CCC
Q 018194 117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-EDN 189 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~ 189 (359)
...+.++.+||-.|||. |..+..+++..+++|+++|.+++.++.+++. |...-+.....+..++. + ...
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~t~~~ 236 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF----GADLTLNPKDKSAREVKKLIKAFAKAR 236 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCceEecCccccHHHHHHHHHhhcccC
Confidence 35677899999999965 6677777887788999999999988877653 22111111111100000 0 112
Q ss_pred ccc----eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 190 HFD----GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 190 ~fD----~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.+| +|+-. .. ....+....++|++||+++++.
T Consensus 237 g~d~~~d~v~d~-----~g-~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 237 GLRSTGWKIFEC-----SG-SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCcCEEEEC-----CC-ChHHHHHHHHHHhcCCeEEEEC
Confidence 344 44321 11 2346677788999999998864
No 338
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=92.80 E-value=1.4 Score=40.01 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=64.4
Q ss_pred HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCC
Q 018194 116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFED 188 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~ 188 (359)
....+.+|.+||=.|+ |.|..+..+++..|++|++++.+++..+.+++. |.. .++...-.+. ....
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~----Ga~---~vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL----GFD---AVFNYKTVSLEEALKEAAP 209 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEEeCCCccHHHHHHHHCC
Confidence 4456778999998884 456778888887789999999999887777652 321 2222111111 0112
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+.+|+|+-... ...+....+.|+++|+++.+
T Consensus 210 ~gvd~vld~~g-------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 210 DGIDCYFDNVG-------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCcEEEEECCC-------HHHHHHHHHhhccCCEEEEE
Confidence 45888875322 24568889999999999865
No 339
>PLN02494 adenosylhomocysteinase
Probab=92.76 E-value=1.2 Score=42.49 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=58.7
Q ss_pred HHHHHhcCC-CCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194 112 EMAVDLIDV-KAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189 (359)
Q Consensus 112 ~~~~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 189 (359)
+-+.+...+ -.|.+|+-+|+|. |......++..|++|+++|.++.....+... |. .+. +..+. -.
T Consensus 242 d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~----G~----~vv--~leEa---l~ 308 (477)
T PLN02494 242 DGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME----GY----QVL--TLEDV---VS 308 (477)
T ss_pred HHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc----CC----eec--cHHHH---Hh
Confidence 334444333 4688999999995 5544555555688999999998654443221 21 111 22121 13
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..|+|+..-. +..-+..+....+||||.++.+
T Consensus 309 ~ADVVI~tTG-----t~~vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 309 EADIFVTTTG-----NKDIIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred hCCEEEECCC-----CccchHHHHHhcCCCCCEEEEc
Confidence 4698887332 2222347788899999999864
No 340
>PLN02740 Alcohol dehydrogenase-like
Probab=92.69 E-value=1.2 Score=41.68 Aligned_cols=99 Identities=19% Similarity=0.308 Sum_probs=63.8
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-----CCC-C-CC
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN-----FLK-M-PF 186 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~~ 186 (359)
....+.++.+||=+|+|. |..+..+++..|+ +|+++|.+++.++.+++. |.. .++... ..+ + ..
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GIT---DFINPKDSDKPVHERIREM 264 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CCc---EEEecccccchHHHHHHHH
Confidence 345678899999999874 5566777777777 699999999988887653 321 122111 100 0 01
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE 227 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 227 (359)
..+.+|+|+-.-. -...+......+++| |+++++.
T Consensus 265 ~~~g~dvvid~~G------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 265 TGGGVDYSFECAG------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred hCCCCCEEEECCC------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 1225888876432 224677788889997 9988753
No 341
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=92.64 E-value=1.2 Score=39.35 Aligned_cols=96 Identities=18% Similarity=0.183 Sum_probs=62.5
Q ss_pred hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceE
Q 018194 117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGA 194 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v 194 (359)
...+.++.+||-.|||. |..+..+++..+++ |++++.+++..+.+++. +....+.....+ ......+|+|
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~----~~~~~~~d~v 163 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPVAADTAD----EIGGRGADVV 163 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccccccchh----hhcCCCCCEE
Confidence 45677889999998864 66667777766777 99999999988776653 211111100000 1123468888
Q ss_pred EecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+.... ....+....+.|+++|.++..
T Consensus 164 l~~~~------~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 164 IEASG------SPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEccC------ChHHHHHHHHHhcCCcEEEEE
Confidence 75321 123677888999999999865
No 342
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=92.52 E-value=1.8 Score=39.48 Aligned_cols=97 Identities=21% Similarity=0.116 Sum_probs=62.9
Q ss_pred cCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEE
Q 018194 118 IDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDNHFDGAY 195 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~ 195 (359)
..+.++.+||-.||| .|..+..+++..|.+|++++.++...+.+++. +.. .++..+-.... -..+.+|+++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD---EVVDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc---EEeccCCcchHHhccCCCCEEE
Confidence 567788899999987 56677777777788999999999888776432 211 11111110000 0124588887
Q ss_pred ecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.... ....+..+.+.|+++|.++...
T Consensus 231 ~~~~------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 231 VTVV------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ECCC------cHHHHHHHHHhcccCCEEEEEC
Confidence 6422 1246788899999999998753
No 343
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=92.31 E-value=0.72 Score=42.56 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=60.8
Q ss_pred hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C--CCCCC
Q 018194 117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK---M--PFEDN 189 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~--~~~~~ 189 (359)
.....++.+||=.|+|. |..+..+++..+++ |++++.+++.++.+++. |.. .++..+-.. + .....
T Consensus 155 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~~~~ 227 (347)
T PRK10309 155 LAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAM---QTFNSREMSAPQIQSVLREL 227 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---eEecCcccCHHHHHHHhcCC
Confidence 44667889999998864 55667777777776 78999999888776542 221 111111100 0 01223
Q ss_pred ccc-eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 190 HFD-GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 190 ~fD-~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.+| +|+-.- . -...+....+.|++||+++++.
T Consensus 228 ~~d~~v~d~~-----G-~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 228 RFDQLILETA-----G-VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCCeEEEECC-----C-CHHHHHHHHHHhhcCCEEEEEc
Confidence 567 544321 1 1357788889999999998864
No 344
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=92.26 E-value=0.085 Score=40.83 Aligned_cols=75 Identities=25% Similarity=0.399 Sum_probs=47.2
Q ss_pred eEEEEcCCCC-CCCCCCccceEEecccccccCCH----HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhh
Q 018194 174 CEVVCGNFLK-MPFEDNHFDGAYSIEATCHAPKL----EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGI 248 (359)
Q Consensus 174 i~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (359)
+++..+|+.+ ++--...||+|+... +.--.++ .++++++.++++|||.+.-+.
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------- 90 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------- 90 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee---------------------
Confidence 4566666644 121126788888754 2222233 589999999999999887421
Q ss_pred hcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194 249 ERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~ 280 (359)
....+++.|+++||.+.+...+
T Consensus 91 ----------~a~~Vr~~L~~aGF~v~~~~g~ 112 (124)
T PF05430_consen 91 ----------SAGAVRRALQQAGFEVEKVPGF 112 (124)
T ss_dssp -----------BHHHHHHHHHCTEEEEEEE-S
T ss_pred ----------chHHHHHHHHHcCCEEEEcCCC
Confidence 1247889999999999876554
No 345
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=92.25 E-value=1.6 Score=39.82 Aligned_cols=99 Identities=20% Similarity=0.234 Sum_probs=64.0
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCC
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM----PFEDN 189 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~ 189 (359)
....+.++.+||-+|+|. |..+..+++..+++ +++++.+++..+.+++. +.. .++..+-.+. .....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcCC
Confidence 445677889999998652 55666777766776 89999998887776443 221 2222111110 01235
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.+|+++.... ....+.++.+.|+++|+++...
T Consensus 226 ~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 6899886421 1356788899999999998754
No 346
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.16 E-value=1.6 Score=40.01 Aligned_cols=123 Identities=13% Similarity=0.202 Sum_probs=78.4
Q ss_pred CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEeccc
Q 018194 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAYSIEA 199 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~ 199 (359)
..+++|+-||.|.+..-+....---+.++|+++..++.-+.+... ..+...|+.... +....+|+++...-
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence 468999999999999877764223567899999998887776532 356667776543 11117899987654
Q ss_pred cccc---------CCH----HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194 200 TCHA---------PKL----EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEI 266 (359)
Q Consensus 200 l~~~---------~~~----~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (359)
-..+ .|. ---+.++...++| .+++.|-+.. ++.. .-...+.+.+.
T Consensus 77 CQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g------------l~~~--------~~~~~~~i~~~ 134 (328)
T COG0270 77 CQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG------------LLSS--------KGQTFDEIKKE 134 (328)
T ss_pred CcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch------------HHhc--------CchHHHHHHHH
Confidence 3332 122 2345566667788 5555553322 1111 12245789999
Q ss_pred HHhCCCe
Q 018194 267 AKRVGFE 273 (359)
Q Consensus 267 l~~aGF~ 273 (359)
|++.||.
T Consensus 135 L~~~GY~ 141 (328)
T COG0270 135 LEELGYG 141 (328)
T ss_pred HHHcCCc
Confidence 9999996
No 347
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=92.02 E-value=1.9 Score=39.47 Aligned_cols=99 Identities=21% Similarity=0.209 Sum_probs=64.8
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCC
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM------PFED 188 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~ 188 (359)
....+.++.+||-.|+|. |..+..+++..+.+|+++..+++..+.+++. +.. +++...-.++ ..+.
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~---~v~~~~~~~~~~~l~~~~~~ 225 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GAD---DTINVGDEDVAARLRELTDG 225 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCC---EEecCcccCHHHHHHHHhCC
Confidence 345677889999998764 6677788887789999998888887776443 211 2221111110 0123
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
..+|+++.... -...+..+.+.|+++|.++...
T Consensus 226 ~~vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 226 EGADVVIDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 45898876531 1345788899999999988643
No 348
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.92 E-value=0.18 Score=46.80 Aligned_cols=63 Identities=21% Similarity=0.181 Sum_probs=53.0
Q ss_pred CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCC
Q 018194 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSL-CEVVCGNFLK 183 (359)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~ 183 (359)
.++|..|.|+-||.|-++..++.. +|.|++.|.++++++..+..+....+.+. ++....|+.+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 457899999999999999998885 69999999999999999998876665554 7777777654
No 349
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=91.68 E-value=2.9 Score=38.96 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=63.5
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE--cCCCC-C-CCCCC
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVC--GNFLK-M-PFEDN 189 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~-~-~~~~~ 189 (359)
....+.++.+||=.|||. |..+..+++..|+ +|+++|.++..++.+++. |...-+.... .+..+ + ....+
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~ 254 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITDG 254 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhCC
Confidence 445678899999999864 5677778887777 799999999988887653 3211011110 00000 0 01123
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE 227 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 227 (359)
.+|+|+-.-. . ...+.+..+.+++| |++++..
T Consensus 255 g~d~vid~~G-----~-~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 255 GVDYSFECIG-----N-VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCCEEEECCC-----C-HHHHHHHHHHhhcCCCeEEEEe
Confidence 5787765322 1 34677788899886 9988754
No 350
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.51 E-value=1.4 Score=40.91 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=57.4
Q ss_pred CCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCccceEEe
Q 018194 119 DVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC-GNFLKMPFEDNHFDGAYS 196 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~ 196 (359)
...++.+||-.|+|. |..+..+++..++++++++.++.....+. .+.|.. .++. .+........+.+|+|+-
T Consensus 180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~---~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid 253 (360)
T PLN02586 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI---NRLGAD---SFLVSTDPEKMKAAIGTMDYIID 253 (360)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH---HhCCCc---EEEcCCCHHHHHhhcCCCCEEEE
Confidence 345788999999873 66777788877889999988765433221 122321 1111 110011000124788775
Q ss_pred cccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 197 IEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 197 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
... -...+.+..+.|++||+++.+.
T Consensus 254 ~~g------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 254 TVS------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCC------CHHHHHHHHHHhcCCcEEEEeC
Confidence 322 1236778889999999998753
No 351
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.47 E-value=2.6 Score=38.74 Aligned_cols=99 Identities=21% Similarity=0.186 Sum_probs=64.0
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-------C--
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-------M-- 184 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-------~-- 184 (359)
....+.++.+||-.|+|. |..+..+++..|.+ |+.++.+++..+.+++. +.. .++..+-.+ +
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~ 228 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT---HTVNVRTEDTPESAEKIAE 228 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc---EEeccccccchhHHHHHHH
Confidence 456678899999888764 66777778877777 89999888877766542 221 111111111 0
Q ss_pred CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 185 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
......+|+|+-... ....+....+.|+++|+++...
T Consensus 229 ~~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 229 LLGGKGPDVVIECTG------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred HhCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 122345899886432 1236788899999999988653
No 352
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=91.46 E-value=1 Score=41.27 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=67.5
Q ss_pred HHHhcCCCCCCEEEEECCC--CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CC-CC
Q 018194 114 AVDLIDVKAGDRILDVGCG--VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PF-ED 188 (359)
Q Consensus 114 ~~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~-~~ 188 (359)
+....+++++.+||=.|+. .|.++.+|++..|..++++--+++-.+.+++. |-..-+.+...|+.+- .+ ..
T Consensus 134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~~~~~~v~~~t~g 209 (326)
T COG0604 134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL----GADHVINYREEDFVEQVRELTGG 209 (326)
T ss_pred HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc----CCCEEEcCCcccHHHHHHHHcCC
Confidence 3345667889999999854 46688899997776777777777666655543 3222233334433221 11 22
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
..+|+|+-.-. ...+.+....|+++|+++.+..
T Consensus 210 ~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 210 KGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCceEEEECCC-------HHHHHHHHHHhccCCEEEEEec
Confidence 36999987443 4556678899999999998643
No 353
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=91.43 E-value=0.66 Score=42.61 Aligned_cols=98 Identities=18% Similarity=0.220 Sum_probs=62.4
Q ss_pred hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C-C-CCCC
Q 018194 117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK---M-P-FEDN 189 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~-~-~~~~ 189 (359)
.....++.+||-.|+|. |..+..+++..|.+ +++++.++...+.+++. +.. .++..+-.. + . .+..
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~~---~~~~~~~~~~~~~~~~~~~~ 226 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GAD---DTINPKEEDVEKVRELTEGR 226 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC---EEecCccccHHHHHHHhCCC
Confidence 45667888999998765 66777777777776 99999888877665432 221 222111100 0 1 1223
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.+|+++... .....+..+.+.|+++|+++...
T Consensus 227 ~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 227 GADLVIEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 589887642 12346788899999999988753
No 354
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=91.40 E-value=1.3 Score=40.66 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=65.4
Q ss_pred HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCC-C-CCCCCc
Q 018194 116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-NFLK-M-PFEDNH 190 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~ 190 (359)
....+.+|.+||=.|+ |.|..+..+++..|++|++++.+++..+.+++. .|...-+..... +..+ + ....+.
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCCC
Confidence 3456788999999986 456778888887889999999998887777652 232211111111 1111 0 011246
Q ss_pred cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+|+|+-... ...+.+..++|+++|+++.+.
T Consensus 222 vd~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 222 IDIYFDNVG-------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred cEEEEECCC-------HHHHHHHHHHhccCcEEEEec
Confidence 888875321 246788899999999998753
No 355
>PLN02827 Alcohol dehydrogenase-like
Probab=91.37 E-value=0.94 Score=42.49 Aligned_cols=97 Identities=18% Similarity=0.298 Sum_probs=60.8
Q ss_pred hcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-----CCCC-C-CCC
Q 018194 117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-----NFLK-M-PFE 187 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-----d~~~-~-~~~ 187 (359)
...+.++.+||-.|+|. |..+..+++..|+ .|+++|.++...+.+++. |.. .++.. +... + ...
T Consensus 188 ~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga~---~~i~~~~~~~~~~~~v~~~~ 260 (378)
T PLN02827 188 VADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GVT---DFINPNDLSEPIQQVIKRMT 260 (378)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---EEEcccccchHHHHHHHHHh
Confidence 34677899999998864 5566677776676 588999999888777543 321 12111 1100 0 011
Q ss_pred CCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEE
Q 018194 188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSY 226 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 226 (359)
.+.+|+|+-.-. ....+....+.|++| |+++++
T Consensus 261 ~~g~d~vid~~G------~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 261 GGGADYSFECVG------DTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCCCEEEECCC------ChHHHHHHHHhhccCCCEEEEE
Confidence 225888865332 123567788889998 999875
No 356
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=91.30 E-value=0.87 Score=40.14 Aligned_cols=75 Identities=12% Similarity=0.012 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 018194 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS------RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK 183 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 183 (359)
+...+.+.--+.+...++|+|||.|.++..++... ...++.||-.....+. ..+.........++-+..|+.+
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~-D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKA-DNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccc-hhhhhccCCCCceEEEEEEeec
Confidence 33444444445677899999999999999998742 4689999986544332 2223222211346677778777
Q ss_pred CC
Q 018194 184 MP 185 (359)
Q Consensus 184 ~~ 185 (359)
+.
T Consensus 85 l~ 86 (259)
T PF05206_consen 85 LD 86 (259)
T ss_pred cc
Confidence 64
No 357
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=91.30 E-value=2.1 Score=38.85 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=61.7
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceE
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGA 194 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v 194 (359)
....+.++.+||=.|+|. |..+..+++..|.++++++.+++..+.+++ .|... + . +.... .....+|++
T Consensus 149 ~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~-~--~--~~~~~-~~~~~~d~v 218 (319)
T cd08242 149 EQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVET-V--L--PDEAE-SEGGGFDVV 218 (319)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCcE-E--e--Ccccc-ccCCCCCEE
Confidence 455677889999987652 445555666678899999999988887765 23221 1 1 11111 234568988
Q ss_pred EecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194 195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
+-... -...+....+.|+++|.+++
T Consensus 219 id~~g------~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 219 VEATG------SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EECCC------ChHHHHHHHHHhhcCCEEEE
Confidence 76421 13456788889999999986
No 358
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=91.13 E-value=1.3 Score=38.81 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=69.2
Q ss_pred CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC---CccceEEec
Q 018194 122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED---NHFDGAYSI 197 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~fD~v~~~ 197 (359)
.|..|+-+| -.-..+..++- ....+|..+|+++..++..++.+++.|+. |++....|..+ |+|+ ..||+.+..
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~-plpe~~~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRN-PLPEDLKRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcc-cChHHHHhhCCeeecC
Confidence 467899999 33344444443 23469999999999999999999998874 68999999987 5543 689987652
Q ss_pred ccccccCCHHHHHHHHHhccCCC---CEEEE
Q 018194 198 EATCHAPKLEDVYAEVFRVLKPG---SLYVS 225 (359)
Q Consensus 198 ~~l~~~~~~~~~l~~~~~~Lkpg---G~l~~ 225 (359)
..+.++-...++..=...||.- |++.+
T Consensus 229 -PpeTi~alk~FlgRGI~tLkg~~~aGyfgi 258 (354)
T COG1568 229 -PPETIKALKLFLGRGIATLKGEGCAGYFGI 258 (354)
T ss_pred -chhhHHHHHHHHhccHHHhcCCCccceEee
Confidence 2223333455666666677765 66665
No 359
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=91.04 E-value=3.2 Score=39.17 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=63.9
Q ss_pred hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---CCCC-CC--CCC
Q 018194 117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCG---NFLK-MP--FED 188 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~~--~~~ 188 (359)
...+.++.+||=.|+|. |..+..+++..|++ ++.+|.++..++.+++. |.. .+... +..+ +. ...
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~---~v~~~~~~~~~~~v~~~~~~ 252 (393)
T TIGR02819 180 TAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE---TVDLSKDATLPEQIEQILGE 252 (393)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe---EEecCCcccHHHHHHHHcCC
Confidence 35677888988888863 55666777766765 56678888888877653 321 12111 1100 00 122
Q ss_pred CccceEEecccccc--------cCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194 189 NHFDGAYSIEATCH--------APKLEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 189 ~~fD~v~~~~~l~~--------~~~~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
..+|+|+-.-.... ..+....+++..+++++||+++++-.
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 35888875433110 01224588999999999999998654
No 360
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=91.02 E-value=0.84 Score=37.99 Aligned_cols=88 Identities=7% Similarity=0.085 Sum_probs=52.1
Q ss_pred CEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEEcCCCCCC---------CCCCcc
Q 018194 124 DRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGL--DSLCEVVCGNFLKMP---------FEDNHF 191 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~---------~~~~~f 191 (359)
..|+.+|||--.....+.... +..++-+|. |++++.-++..++.+. +.+.+++..|+.+.. +..+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 489999999888777777643 667888887 5666665555554421 124568999998632 223445
Q ss_pred ceEEecccccccC--CHHHHHHH
Q 018194 192 DGAYSIEATCHAP--KLEDVYAE 212 (359)
Q Consensus 192 D~v~~~~~l~~~~--~~~~~l~~ 212 (359)
-++++-.++.+++ +...+|+.
T Consensus 159 tl~i~Egvl~Yl~~~~~~~ll~~ 181 (183)
T PF04072_consen 159 TLFIAEGVLMYLSPEQVDALLRA 181 (183)
T ss_dssp EEEEEESSGGGS-HHHHHHHHHH
T ss_pred eEEEEcchhhcCCHHHHHHHHHH
Confidence 5777777888875 23344443
No 361
>PRK11524 putative methyltransferase; Provisional
Probab=90.89 E-value=0.21 Score=44.83 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=38.0
Q ss_pred CeEEEEcCCCCC--CCCCCccceEEecccccc------c----------CCHHHHHHHHHhccCCCCEEEEE
Q 018194 173 LCEVVCGNFLKM--PFEDNHFDGAYSIEATCH------A----------PKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 173 ~i~~~~~d~~~~--~~~~~~fD~v~~~~~l~~------~----------~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+..++++|+.+. .+++++||+|++.-.... . .-....+.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 346788888774 366788999998532210 0 01257889999999999999874
No 362
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=90.71 E-value=3.4 Score=37.88 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=62.2
Q ss_pred hcCCCCC--CEEEEECC--CCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CC
Q 018194 117 LIDVKAG--DRILDVGC--GVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PF 186 (359)
Q Consensus 117 ~~~~~~~--~~vLDiGc--G~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~ 186 (359)
...+.++ .+||=.|+ |.|..+..+++..|+ +|++++.+++..+.+++. .|.. .++..+-.++ ..
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~---~vi~~~~~~~~~~i~~~ 220 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD---AAINYKTDNVAERLREL 220 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc---EEEECCCCCHHHHHHHH
Confidence 3345555 89998886 467788888887787 899999998877766553 2322 1222111111 01
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
....+|+|+-... . ..+.+..++|+++|+++.+.
T Consensus 221 ~~~gvd~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 221 CPEGVDVYFDNVG-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred CCCCceEEEECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence 1246898875322 2 23578889999999998753
No 363
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.66 E-value=1.8 Score=40.78 Aligned_cols=87 Identities=21% Similarity=0.236 Sum_probs=55.8
Q ss_pred CCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194 121 KAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA 199 (359)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 199 (359)
..|.+|+=+|+|. |......++..|++|+++|.++.....+.. .|. .+. +..+. . ...|+|+..-
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~leea-l--~~aDVVItaT- 258 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DGF----RVM--TMEEA-A--KIGDIFITAT- 258 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cCC----EeC--CHHHH-H--hcCCEEEECC-
Confidence 4688999999996 666666666678999999999865433332 121 221 22221 1 3468887632
Q ss_pred ccccCCHHHHHH-HHHhccCCCCEEEEE
Q 018194 200 TCHAPKLEDVYA-EVFRVLKPGSLYVSY 226 (359)
Q Consensus 200 l~~~~~~~~~l~-~~~~~LkpgG~l~~~ 226 (359)
....++. +....+|||++++..
T Consensus 259 -----G~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 259 -----GNKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred -----CCHHHHHHHHHhcCCCCcEEEEE
Confidence 2234454 488899999998864
No 364
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.61 E-value=0.51 Score=44.07 Aligned_cols=100 Identities=18% Similarity=0.117 Sum_probs=55.6
Q ss_pred CCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194 122 AGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT 200 (359)
Q Consensus 122 ~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 200 (359)
++.+|+=+|+| .|..+...+...|++|+.+|.++..++.+.... + ..+.....+..++.-.-..+|+|+..-..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 45679999998 355666666666889999999987766554332 1 11111111111111011367999875422
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 201 CHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 201 ~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
...+.+.-+-++..+.+|||+.++-.
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 11111222235666778999887753
No 365
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.57 E-value=0.52 Score=44.02 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=51.6
Q ss_pred cCCCCCeEEEEcCCCCCC--CCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194 168 AGLDSLCEVVCGNFLKMP--FEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTT 231 (359)
Q Consensus 168 ~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 231 (359)
.++ ++++++++++.+.. .+++++|.++......+++ +..+.++++.+.++|||++++-.....
T Consensus 272 ~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 272 ARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred cCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 344 68999999998742 5679999999999999987 467899999999999999998654444
No 366
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=90.56 E-value=7.6 Score=36.07 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=62.1
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CC-C-CCCCC
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF--LK-M-PFEDN 189 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~-~-~~~~~ 189 (359)
....+.++.+||=+|+|. |..+..+++..|+ +|+++|.++...+.+++. |...-+.....+. .+ + .....
T Consensus 178 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~ 253 (365)
T cd08277 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDSDKPVSEVIREMTGG 253 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccccchHHHHHHHHhCC
Confidence 345677899999998763 5566667776777 799999999888877542 3211011111000 00 0 01124
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE 227 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 227 (359)
.+|+|+-.-. . ...+....+.|+|+ |+++++.
T Consensus 254 g~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 254 GVDYSFECTG-----N-ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCCEEEECCC-----C-hHHHHHHHHhcccCCCEEEEEc
Confidence 5888875321 1 34677888899886 9998753
No 367
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=90.44 E-value=2.6 Score=38.68 Aligned_cols=96 Identities=18% Similarity=0.275 Sum_probs=60.4
Q ss_pred cCCCCCCEEEEECCC-CChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCC
Q 018194 118 IDVKAGDRILDVGCG-VGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM------PFEDN 189 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~ 189 (359)
....++.+||-.|+| .|..+..+++..+. .+++++.++...+.+++. +.. .++...-.+. ..+.+
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT---DIINPKNGDIVEQILELTGGR 235 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc---EEEcCCcchHHHHHHHHcCCC
Confidence 456678899998775 36677777776675 889998888777665543 211 1221111110 01235
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.+|+++.... ....+.+..+.|+++|+++..
T Consensus 236 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 236 GVDCVIEAVG------FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCcEEEEccC------CHHHHHHHHHHhhcCCEEEEE
Confidence 6898875422 124778889999999998865
No 368
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.43 E-value=3.5 Score=37.98 Aligned_cols=99 Identities=22% Similarity=0.275 Sum_probs=63.2
Q ss_pred HhcCCCCCCEEEEECCC-CChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CC
Q 018194 116 DLIDVKAGDRILDVGCG-VGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----P-FE 187 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~ 187 (359)
....++++.+||-.|+| .|..+..+++..|. .++++|.+++..+.+++ .|.. .++..+-.+. . ..
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~ 232 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTG 232 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhC
Confidence 34567788999999876 35566777776677 69999999888777664 2321 1221111111 0 12
Q ss_pred CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
...+|+|+-... ....+..+.+.|+++|+++.+.
T Consensus 233 ~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 233 GKGVDAVIIAGG------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCCcEEEECCC------CHHHHHHHHHHhhcCCEEEEec
Confidence 346888875322 1356788999999999998653
No 369
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.42 E-value=2.5 Score=40.12 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=54.6
Q ss_pred CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194 122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT 200 (359)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 200 (359)
.|.+|+=+|+|. |......++..|++|+.+|.++.....+.. .| ..+ .++.+. ...+|+|+..-
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G----~~v--~~l~ea---l~~aDVVI~aT-- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DG----FRV--MTMEEA---AELGDIFVTAT-- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cC----CEe--cCHHHH---HhCCCEEEECC--
Confidence 688999999985 444444455568899999999876544322 12 121 122221 13579987643
Q ss_pred cccCCHHHHHH-HHHhccCCCCEEEEE
Q 018194 201 CHAPKLEDVYA-EVFRVLKPGSLYVSY 226 (359)
Q Consensus 201 ~~~~~~~~~l~-~~~~~LkpgG~l~~~ 226 (359)
.+ ..++. +....+|+|++++..
T Consensus 276 ---G~-~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 276 ---GN-KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred ---CC-HHHHHHHHHhcCCCCCEEEEc
Confidence 12 33554 688999999998864
No 370
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.38 E-value=3.5 Score=34.16 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=59.9
Q ss_pred HHHhcCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccc
Q 018194 114 AVDLIDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD 192 (359)
Q Consensus 114 ~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 192 (359)
+........+.+||-+|.= +|.....+... .++|+.+|+.|.|-.. ++++++|..+ +.++.+.+|
T Consensus 36 i~~~~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~----~~~~~G~~D 101 (254)
T COG4017 36 IRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL----LKFIRGEVD 101 (254)
T ss_pred hhhhhcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh----cCCCCCcee
Confidence 3333444567899999985 67777666654 5899999999987543 4667777665 334568899
Q ss_pred eEEecccccccCCHHHHHHHHHhccCCC
Q 018194 193 GAYSIEATCHAPKLEDVYAEVFRVLKPG 220 (359)
Q Consensus 193 ~v~~~~~l~~~~~~~~~l~~~~~~Lkpg 220 (359)
+|+-.-.+.-+. + +..+-+.|+
T Consensus 102 livDlTGlGG~~-P-----e~L~~fnp~ 123 (254)
T COG4017 102 LIVDLTGLGGIE-P-----EFLAKFNPK 123 (254)
T ss_pred EEEeccccCCCC-H-----HHHhccCCc
Confidence 999877776653 2 344556775
No 371
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.35 E-value=4.3 Score=39.67 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=65.6
Q ss_pred CCCEEEEECCCCChHHHHHHhhc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCC-C-CCCccce
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHS-----RANVVGITINEYQVNRARLHNKKAGLDS-LCEVVCGNFLKMP-F-EDNHFDG 193 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~-~-~~~~fD~ 193 (359)
|+..|.|..||+|.+.....+.. ...++|.+..+.+...++....-.+... ......+|....+ + ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 66799999999999886544321 1479999999999999988754444321 2233334433211 1 2345777
Q ss_pred EEecccc--------------------cc-cC----CHHHHHHHHHhccCCCCEEEEE
Q 018194 194 AYSIEAT--------------------CH-AP----KLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 194 v~~~~~l--------------------~~-~~----~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
|+++-.. .| ++ .-..++..+..+|++||+..++
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 7654321 11 11 1236778888999999986654
No 372
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.31 E-value=2.8 Score=36.59 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=62.1
Q ss_pred CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194 119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE 198 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~ 198 (359)
.+.+|+..+|+|+-.|+++..|.++ +..|+++|..+-.-.. . . .+.|+....|-..........|..+|..
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~ma~sL----~-d---tg~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGPMAQSL----M-D---TGQVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc-ceEEEEeccchhhhhh----h-c---ccceeeeeccCcccccCCCCCceEEeeh
Confidence 4568999999999999999999986 6799999975432111 1 1 2457777888777643356789888866
Q ss_pred cccccCCHHHHHHHHHhccCCC
Q 018194 199 ATCHAPKLEDVYAEVFRVLKPG 220 (359)
Q Consensus 199 ~l~~~~~~~~~l~~~~~~Lkpg 220 (359)
+ ..+..+-.-+...|..|
T Consensus 279 V----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 279 V----EKPARVAALIAKWLVNG 296 (358)
T ss_pred h----cCcHHHHHHHHHHHHcc
Confidence 4 44555555555555544
No 373
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.26 E-value=7.6 Score=34.87 Aligned_cols=153 Identities=11% Similarity=0.141 Sum_probs=78.9
Q ss_pred CCCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcC------C--------------CCCeEEE
Q 018194 121 KAGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAG------L--------------DSLCEVV 177 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~------~--------------~~~i~~~ 177 (359)
.....|+.+|||.-.+...|... ....++=+|.++.............. + .++....
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~ 165 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLI 165 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeee
Confidence 44568999999999888777663 33577778887665544411111000 0 0122233
Q ss_pred EcCCCCCC----------CCCCccceEEecccccccC-C-HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHH
Q 018194 178 CGNFLKMP----------FEDNHFDGAYSIEATCHAP-K-LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDII 245 (359)
Q Consensus 178 ~~d~~~~~----------~~~~~fD~v~~~~~l~~~~-~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 245 (359)
-.|+.++. ...+-.-++++--+|.+++ + -..+++.+......+ .++.+|-..+ . .....++
T Consensus 166 g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a-~fv~YEQi~~-----~-D~Fg~vM 238 (335)
T KOG2918|consen 166 GCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENA-HFVNYEQINP-----N-DRFGKVM 238 (335)
T ss_pred ccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcc-cEEEEeccCC-----C-ChHHHHH
Confidence 33333221 0011122344444566664 2 235566666555544 4444443321 1 1111222
Q ss_pred hhhhcCC-----CCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194 246 QGIERGD-----ALPGLRSYAEITEIAKRVGFEVVKEKDL 280 (359)
Q Consensus 246 ~~~~~~~-----~~~~~~~~~~~~~~l~~aGF~~i~~~~~ 280 (359)
..-.... +...+.+.+..++.+.++||+.+...++
T Consensus 239 ~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 239 LANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred HHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 1111111 2224668889999999999999988776
No 374
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=90.21 E-value=3.7 Score=38.19 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=63.0
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-C----CCC-C-CC
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-N----FLK-M-PF 186 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d----~~~-~-~~ 186 (359)
....++++.+||=.|+|. |..+..+++..|+ .|+++|.++..++.+++. |.. .++.. + +.+ . ..
T Consensus 180 ~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----Ga~---~~i~~~~~~~~~~~~v~~~ 252 (368)
T cd08300 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----GAT---DCVNPKDHDKPIQQVLVEM 252 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCC---EEEcccccchHHHHHHHHH
Confidence 345678899999998763 5566777777777 799999999988877542 321 12211 1 100 0 01
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE 227 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 227 (359)
..+.+|+|+-.-. -...+....+.|+++ |+++++.
T Consensus 253 ~~~g~d~vid~~g------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 253 TDGGVDYTFECIG------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred hCCCCcEEEECCC------ChHHHHHHHHhhccCCCeEEEEc
Confidence 1236888875321 134677788899997 9988754
No 375
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.14 E-value=5.8 Score=35.74 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=62.5
Q ss_pred HHhcCCCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCCC------
Q 018194 115 VDLIDVKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-NFLKMP------ 185 (359)
Q Consensus 115 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~------ 185 (359)
.....+.||.++.-+|+|. |....+-++..| .+++|+|++++-.+.|++. |.. +|+.. |..+ |
T Consensus 185 ~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f----GaT---e~iNp~d~~~-~i~evi~ 256 (375)
T KOG0022|consen 185 WNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF----GAT---EFINPKDLKK-PIQEVII 256 (375)
T ss_pred hhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc----Ccc---eecChhhccc-cHHHHHH
Confidence 3445678899999999986 434444455434 6999999999999998865 222 33322 2322 2
Q ss_pred -CCCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEEee
Q 018194 186 -FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYEWV 229 (359)
Q Consensus 186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 229 (359)
.-++.+|.-+- .+ -..+++++.....+.| |.-+++-..
T Consensus 257 EmTdgGvDysfE--c~----G~~~~m~~al~s~h~GwG~sv~iGv~ 296 (375)
T KOG0022|consen 257 EMTDGGVDYSFE--CI----GNVSTMRAALESCHKGWGKSVVIGVA 296 (375)
T ss_pred HHhcCCceEEEE--ec----CCHHHHHHHHHHhhcCCCeEEEEEec
Confidence 12355555432 22 1245677778888888 887775433
No 376
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=89.73 E-value=3.4 Score=37.65 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=65.9
Q ss_pred HHHHhcCCCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC-CC-----
Q 018194 113 MAVDLIDVKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL-KM----- 184 (359)
Q Consensus 113 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~----- 184 (359)
......+.++|.+|.-+|||. |..+..-|+..+ .+++++|+++.-++.|++.-. .+++...-. +.
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA-------T~~vn~~~~~~vv~~i~ 248 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA-------THFVNPKEVDDVVEAIV 248 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC-------ceeecchhhhhHHHHHH
Confidence 345567788999999999985 555555555444 599999999999999887532 233332211 00
Q ss_pred CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194 185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 185 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
...++..|.++- ..-+ ...++.....+.++|..+++-.
T Consensus 249 ~~T~gG~d~~~e-----~~G~-~~~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 249 ELTDGGADYAFE-----CVGN-VEVMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred HhcCCCCCEEEE-----ccCC-HHHHHHHHHHHhcCCeEEEEec
Confidence 122234555532 1222 3377888888888999988643
No 377
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=89.65 E-value=5.5 Score=36.83 Aligned_cols=93 Identities=24% Similarity=0.177 Sum_probs=58.1
Q ss_pred CCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--------C-CCCC
Q 018194 121 KAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--------P-FEDN 189 (359)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--------~-~~~~ 189 (359)
.++.+||=.|+|. |..+..+++..++ +|++++.++...+.+++ .|.. .++..+-... . ....
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~~ 248 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD---ATIDIDELPDPQRRAIVRDITGGR 248 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC---eEEcCcccccHHHHHHHHHHhCCC
Confidence 4788898888752 4556667777788 99999998887766543 2322 1211111100 0 1224
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.+|+|+-... ....+....+.|+++|+++.+
T Consensus 249 ~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 249 GADVVIEASG------HPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCcEEEECCC------ChHHHHHHHHHhccCCEEEEE
Confidence 6898875421 134567888999999999875
No 378
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=89.60 E-value=1.1 Score=37.97 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM 184 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 184 (359)
++.+.+.+..+.-...-|.+||.|.|+.++.+....-.+...+++++..+.-.+-..+.. +.+..++++|+...
T Consensus 37 ~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 37 RLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC--CcceEEecccccee
Confidence 345667777776677899999999999999998753457888888887776655544433 34677777877653
No 379
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=89.58 E-value=0.96 Score=44.09 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=61.6
Q ss_pred CCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCC
Q 018194 119 DVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------FED 188 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~ 188 (359)
-+.++..|||+||..|.|..-.++. .+.-|+|+|+-|.-. .++|.-.+.|+.... ...
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp------------~~~c~t~v~dIttd~cr~~l~k~l~t 108 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP------------IPNCDTLVEDITTDECRSKLRKILKT 108 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc------------CCccchhhhhhhHHHHHHHHHHHHHh
Confidence 4567889999999999999877774 457999999866321 234444455554311 112
Q ss_pred CccceEEeccccc----ccCC-------HHHHHHHHHhccCCCCEEEEEEeeeCcccc
Q 018194 189 NHFDGAYSIEATC----HAPK-------LEDVYAEVFRVLKPGSLYVSYEWVTTDKYE 235 (359)
Q Consensus 189 ~~fD~v~~~~~l~----~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 235 (359)
-..|+|+...+-. +..| ....|+-....|..||.++ ...+.+..|.
T Consensus 109 ~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv-tkvfrs~dy~ 165 (780)
T KOG1098|consen 109 WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV-TKVFRSEDYN 165 (780)
T ss_pred CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc-cccccCCcch
Confidence 2347766544311 1111 1245566677889999954 3444444333
No 380
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=89.45 E-value=1.9 Score=39.49 Aligned_cols=97 Identities=16% Similarity=0.076 Sum_probs=61.2
Q ss_pred cCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccce
Q 018194 118 IDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDG 193 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~ 193 (359)
+.+.++.+||=.|+|. |..+..+++..|.+++.++.+++.++.+++. |.. .++...-.+.. .....+|+
T Consensus 159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~----g~~---~~i~~~~~~~~~~~~~~~~~d~ 231 (333)
T cd08296 159 SGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKL----GAH---HYIDTSKEDVAEALQELGGAKL 231 (333)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc----CCc---EEecCCCccHHHHHHhcCCCCE
Confidence 4677888999999653 5566667777788999999998877776442 321 12211111110 01134788
Q ss_pred EEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
++.... ....+..+.+.|+++|.++...
T Consensus 232 vi~~~g------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 232 ILATAP------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EEECCC------chHHHHHHHHHcccCCEEEEEe
Confidence 875311 1346788899999999998753
No 381
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=89.02 E-value=2.3 Score=39.49 Aligned_cols=106 Identities=22% Similarity=0.255 Sum_probs=69.3
Q ss_pred CCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcC-CCCCeEEEEcCCCCCC---------------
Q 018194 123 GDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAG-LDSLCEVVCGNFLKMP--------------- 185 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~--------------- 185 (359)
+.++||.+|+.+.....+++. .-.+--|+++..+.+..+.......+ ...+..+..+|+...+
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~ 260 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGF 260 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccc
Confidence 469999999999999888874 22456677888887777665443311 2224555555554332
Q ss_pred --------------CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194 186 --------------FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 231 (359)
Q Consensus 186 --------------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 231 (359)
++..++|. +.+..|+++...++......++|+|.+.+.+....
T Consensus 261 ~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~ 317 (364)
T KOG1269|consen 261 EHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRG 317 (364)
T ss_pred hhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCc
Confidence 11222333 34555666667788899999999999998765553
No 382
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=88.91 E-value=3.6 Score=37.42 Aligned_cols=95 Identities=22% Similarity=0.184 Sum_probs=61.2
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceE
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGA 194 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v 194 (359)
....+.++.+||=.|||. |..+..+++..+.+|+.++.++...+.+++ .|.. .+... ... +...+|++
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~--~~~--~~~~vD~v 229 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD---WAGDS--DDL--PPEPLDAA 229 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc---EEecc--Ccc--CCCcccEE
Confidence 455677888888887763 445555667678899999998877666643 2321 11111 111 23468887
Q ss_pred EecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+.... ....+..+.+.|+++|.++...
T Consensus 230 i~~~~------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 230 IIFAP------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEcCC------cHHHHHHHHHHhhcCCEEEEEc
Confidence 65321 1246888999999999999754
No 383
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=88.86 E-value=5.2 Score=37.94 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=61.6
Q ss_pred cCCCCCCEEEEEC-CC-CChHHHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHc----CCCCCeEEEEcCC-CCCC--
Q 018194 118 IDVKAGDRILDVG-CG-VGGPMRAIAAHSR---ANVVGITINEYQVNRARLHNKKA----GLDSLCEVVCGNF-LKMP-- 185 (359)
Q Consensus 118 ~~~~~~~~vLDiG-cG-~G~~~~~l~~~~~---~~v~g~D~s~~~~~~a~~~~~~~----~~~~~i~~~~~d~-~~~~-- 185 (359)
..++++.+||=+| +| .|..+..+++..+ .+|+++|.++..++.+++..... |. ...++...- .++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~ 248 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHAT 248 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHH
Confidence 4567888999897 34 5777777887643 27999999999999887742110 10 011121100 1110
Q ss_pred ----CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 186 ----FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 186 ----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.....+|+|+.... ....+....+.++++|.+++.
T Consensus 249 v~~~t~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 249 LMELTGGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHHhCCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEEE
Confidence 12235888776321 135678888999998877653
No 384
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=88.85 E-value=1.3 Score=40.78 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=62.2
Q ss_pred HhcCCCCCCEEEEECCC-CChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-C-CCCCc
Q 018194 116 DLIDVKAGDRILDVGCG-VGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M-P-FEDNH 190 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~ 190 (359)
....+.++.+||=.|+| .|..+..+++..++ .|++++.+++..+.+++. +...-+.....++.+ + . .....
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~ 241 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGG 241 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCC
Confidence 44567788899988865 24455666776777 899999999888777542 321101111111100 0 0 12234
Q ss_pred cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+|+|+-... ....++.+.+.|+++|.++.+.
T Consensus 242 ~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 242 VDVSFDCAG------VQATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCEEEECCC------CHHHHHHHHHhccCCCEEEEEc
Confidence 888876432 1246788899999999988753
No 385
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=88.69 E-value=1.1 Score=41.71 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=61.7
Q ss_pred hcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCC
Q 018194 117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFEDN 189 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~ 189 (359)
...+.++.+||-.|+|. |..+..+++..|. .++++|.++...+.+++. +.. .++..+-.+. .....
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~---~~i~~~~~~~~~~v~~~~~~ 253 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT---HVINPKEEDLVAAIREITGG 253 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc---EEecCCCcCHHHHHHHHhCC
Confidence 34567889999998753 5677777777777 699999998887766542 211 2221111110 01134
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.+|+|+-... . ...+..+.+.|+++|+++.+
T Consensus 254 ~~d~vld~~g-----~-~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 254 GVDYALDTTG-----V-PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CCcEEEECCC-----C-cHHHHHHHHHhccCCEEEEe
Confidence 5888875321 1 24577889999999998875
No 386
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=88.67 E-value=6.2 Score=36.72 Aligned_cols=99 Identities=19% Similarity=0.281 Sum_probs=61.8
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC--CC-----CC
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL--KM-----PF 186 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~--~~-----~~ 186 (359)
....+.++.+||=.|+|. |..+..+++..++ +|+++|.+++.++.+++. |.. .++..+-. .. ..
T Consensus 181 ~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~v~~~ 253 (369)
T cd08301 181 NVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF----GVT---EFVNPKDHDKPVQEVIAEM 253 (369)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEEcccccchhHHHHHHHH
Confidence 345677899999998763 5566667776777 799999999888877542 321 12211100 00 01
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE 227 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 227 (359)
..+.+|+++-.-. ....+....+.+++| |++++..
T Consensus 254 ~~~~~d~vid~~G------~~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 254 TGGGVDYSFECTG------NIDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred hCCCCCEEEECCC------ChHHHHHHHHHhhcCCCEEEEEC
Confidence 1235787764321 134667778889996 9988754
No 387
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=88.64 E-value=6.1 Score=36.62 Aligned_cols=96 Identities=18% Similarity=0.110 Sum_probs=57.3
Q ss_pred CCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCccceEEec
Q 018194 120 VKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC-GNFLKMPFEDNHFDGAYSI 197 (359)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~~ 197 (359)
..++.+||-.|+|. |..+..+++..|+++++++.+++....+.+. .|.. .++. .+...+.-....+|+|+-.
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~---~~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD---DYLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc---EEecCCChHHHHHhcCCCcEEEEC
Confidence 35788999887753 5666777887788899998887765544332 2321 1111 1100010001247777643
Q ss_pred ccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 198 EATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
-. ....+..+.+.|++||+++.+.
T Consensus 252 ~g------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 252 VP------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CC------chHHHHHHHHHhccCCEEEEEC
Confidence 21 1246777889999999998753
No 388
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.93 E-value=9.8 Score=32.61 Aligned_cols=102 Identities=23% Similarity=0.179 Sum_probs=61.5
Q ss_pred CCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 018194 122 AGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----D 188 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 188 (359)
.+.+||-.|++ |.++..+++ ..|.+|++++-++...+...+..... .++.++.+|+.+.. +. -
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 35689988886 444444443 24789999999887766554443322 25788899987632 00 1
Q ss_pred CccceEEecccccccC---C--------------HHHHHHHHHhccCCCCEEEEEE
Q 018194 189 NHFDGAYSIEATCHAP---K--------------LEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~---~--------------~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+..|.++......... + ...+++.+...++++|.+++..
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3467777655332111 1 1234566667778888877653
No 389
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.86 E-value=4.8 Score=35.96 Aligned_cols=78 Identities=18% Similarity=0.102 Sum_probs=57.4
Q ss_pred CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 018194 122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----------FED 188 (359)
Q Consensus 122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 188 (359)
.|..||==|.|.|. .+.++|++ +++++..|+++...+.-.+..++.| +++...+|+.+.. -.-
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 46788888888774 55555664 6899999999988887777776654 6899999998743 123
Q ss_pred CccceEEeccccccc
Q 018194 189 NHFDGAYSIEATCHA 203 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~ 203 (359)
+..|+++.+..+-+.
T Consensus 113 G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 113 GDVDILVNNAGIVTG 127 (300)
T ss_pred CCceEEEeccccccC
Confidence 678888887766543
No 390
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.57 E-value=3.4 Score=31.12 Aligned_cols=84 Identities=21% Similarity=0.172 Sum_probs=54.2
Q ss_pred CCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEeccccccc
Q 018194 131 CGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYSIEATCHA 203 (359)
Q Consensus 131 cG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l~~~ 203 (359)
||.|..+..+++. .+..|+.+|.+++.++.+++. .+.++.+|..+.. ..-...|.|++... -
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---~ 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILTD---D 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEESS---S
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEccC---C
Confidence 5667788877762 334899999999998877654 2689999998743 22356777776432 0
Q ss_pred CCHHHHHHHHHhccCCCCEEEE
Q 018194 204 PKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 204 ~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
+.....+....+.+.|...++.
T Consensus 73 d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 73 DEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHHHCCCCeEEE
Confidence 1223344455666778888776
No 391
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=87.22 E-value=2 Score=38.57 Aligned_cols=97 Identities=16% Similarity=0.073 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCE--EEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 018194 104 RDATRLHEEMAVDLIDVKAGDR--ILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN 180 (359)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~--vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d 180 (359)
+.-.-.+++.++..-+...+.. =+|||.|+-.+-..+.. ..+....++|++...+..|+....+.++...+.+++..
T Consensus 82 R~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~ 161 (419)
T KOG2912|consen 82 RLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVE 161 (419)
T ss_pred chhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEec
Confidence 3333444444444444333333 47888887654444432 35678999999999999999999999988888888775
Q ss_pred CCCCC-------CCCCccceEEecccc
Q 018194 181 FLKMP-------FEDNHFDGAYSIEAT 200 (359)
Q Consensus 181 ~~~~~-------~~~~~fD~v~~~~~l 200 (359)
..+.- .++..||.+.|+-.+
T Consensus 162 ~~ktll~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 162 PQKTLLMDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred chhhcchhhhccCccceeeEEecCCch
Confidence 43321 224458888776543
No 392
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=87.13 E-value=2.5 Score=39.55 Aligned_cols=94 Identities=19% Similarity=0.137 Sum_probs=56.6
Q ss_pred CCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHH-HHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCccceEEec
Q 018194 121 KAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQ-VNRARLHNKKAGLDSLCEVVC-GNFLKMPFEDNHFDGAYSI 197 (359)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~-~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~~ 197 (359)
.++.+||-.|+|. |..+..+++..|++|++++.+++. .+.+++ .|.. .++. .+.....-..+.+|+|+-.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~----lGa~---~~i~~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR----LGAD---SFLVTTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh----CCCc---EEEcCcCHHHHHHhhCCCcEEEEC
Confidence 4788999998863 567777788778899999987653 344332 3321 1111 1100000001247877653
Q ss_pred ccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 198 EATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
-. ....+....+.+++||.++.+.
T Consensus 250 ~G------~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 250 VS------AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred CC------cHHHHHHHHHhhcCCCEEEEEc
Confidence 21 2346778889999999998764
No 393
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.06 E-value=13 Score=37.23 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=56.0
Q ss_pred CEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEe
Q 018194 124 DRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYS 196 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~ 196 (359)
.+|+=+|+| ..+..+++ ..+.+++.+|.+++.++.+++. | ...+.+|+.+.. ..-+..|++++
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY----G----YKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----C----CeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 456666655 45555554 2467999999999999887642 2 578999998743 22346777766
Q ss_pred cccccccCCHH--HHHHHHHhccCCCCEEEE
Q 018194 197 IEATCHAPKLE--DVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 197 ~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~ 225 (359)
.. +|.+ ..+-...|.+.|...++.
T Consensus 471 ~~-----~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 471 TC-----NEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred Ee-----CCHHHHHHHHHHHHHHCCCCeEEE
Confidence 43 3332 233344566788888876
No 394
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=86.75 E-value=6.9 Score=35.36 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=52.8
Q ss_pred CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194 122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT 200 (359)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 200 (359)
.+.+|+=+|+|. |......++..|++|+.+|.++...+.++. .+ .++.. ..++...-..+|+|+..-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G----~~~~~--~~~l~~~l~~aDiVI~t~-- 218 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MG----LSPFH--LSELAEEVGKIDIIFNTI-- 218 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----Ceeec--HHHHHHHhCCCCEEEECC--
Confidence 578999999974 333444444568899999999876555432 22 22221 111111124689998852
Q ss_pred cccCCHHHHHHHHHhccCCCCEEEE
Q 018194 201 CHAPKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 201 ~~~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
|. ..+-+++.+.++||+.++-
T Consensus 219 ---p~-~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 219 ---PA-LVLTKEVLSKMPPEALIID 239 (296)
T ss_pred ---Ch-hhhhHHHHHcCCCCcEEEE
Confidence 21 1233567788999887663
No 395
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=86.64 E-value=4.9 Score=37.70 Aligned_cols=100 Identities=16% Similarity=0.069 Sum_probs=60.6
Q ss_pred cCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---CCCC-C-C-CCCC
Q 018194 118 IDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCG---NFLK-M-P-FEDN 189 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~-~-~~~~ 189 (359)
..+.++.+||=.|+|. |..+..+++..|+ .|++++.++...+.+++ .|...-+..... +..+ + . .+..
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhcCCC
Confidence 4677888998887753 4455666776677 79999998886655554 232211111110 1000 0 0 1234
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.+|+|+... .+....+..+.+.|+++|+++..
T Consensus 275 gvDvvld~~-----g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 275 GADIQVEAA-----GAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCEEEECC-----CCcHHHHHHHHHHHHcCCEEEEE
Confidence 589887642 23345678889999999999875
No 396
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=86.46 E-value=0.47 Score=39.99 Aligned_cols=94 Identities=19% Similarity=0.280 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 018194 109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-- 185 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 185 (359)
.+.+.++..+...++...+|.--|.|..+..+.+ .+..+++++|-+|-.-+.|+-...+. .++.+..+.+++..++
T Consensus 30 Vm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~~l 108 (303)
T KOG2782|consen 30 VMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIKSL 108 (303)
T ss_pred eehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHHHH
Confidence 3456778888888999999999999998887776 57789999999999888887766432 2333444444444432
Q ss_pred -----CCCCccceEEeccccccc
Q 018194 186 -----FEDNHFDGAYSIEATCHA 203 (359)
Q Consensus 186 -----~~~~~fD~v~~~~~l~~~ 203 (359)
+.+.++|-|++......+
T Consensus 109 ~~~~gl~~~~vDGiLmDlGcSSM 131 (303)
T KOG2782|consen 109 IADTGLLDVGVDGILMDLGCSSM 131 (303)
T ss_pred HHHhCCCcCCcceEEeecCcccc
Confidence 456889998876654443
No 397
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=86.41 E-value=1.1 Score=40.76 Aligned_cols=122 Identities=20% Similarity=0.266 Sum_probs=74.2
Q ss_pred EEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEeccccc
Q 018194 125 RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAYSIEATC 201 (359)
Q Consensus 125 ~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~l~ 201 (359)
+++|+-||.|.++.-+.+..--.+.++|+++..++.-+.++. ....+|+.++. ++. .+|+++....-.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCCc
Confidence 799999999999988877522478899999999888877753 67788888865 443 589988754322
Q ss_pred cc---------CC----HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194 202 HA---------PK----LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK 268 (359)
Q Consensus 202 ~~---------~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (359)
-+ .| +-..+-++.+.++| .+++.|-+..-. ..... .....+.+.|+
T Consensus 73 ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~P--k~~~~ENV~~l~-~~~~~------------------~~~~~i~~~l~ 131 (335)
T PF00145_consen 73 GFSIAGKRKGFDDPRNSLFFEFLRIVKELKP--KYFLLENVPGLL-SSKNG------------------EVFKEILEELE 131 (335)
T ss_dssp TTSTTSTHHCCCCHTTSHHHHHHHHHHHHS---SEEEEEEEGGGG-TGGGH------------------HHHHHHHHHHH
T ss_pred eEeccccccccccccchhhHHHHHHHhhccc--eEEEecccceee-ccccc------------------ccccccccccc
Confidence 21 12 22233344455788 445545443210 00000 12357888899
Q ss_pred hCCCeEEE
Q 018194 269 RVGFEVVK 276 (359)
Q Consensus 269 ~aGF~~i~ 276 (359)
+.||.+..
T Consensus 132 ~lGY~v~~ 139 (335)
T PF00145_consen 132 ELGYNVQW 139 (335)
T ss_dssp HTTEEEEE
T ss_pred ccceeehh
Confidence 99998653
No 398
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=86.39 E-value=15 Score=35.48 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=53.4
Q ss_pred CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194 122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT 200 (359)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 200 (359)
.|.+|+=+|+|. |......++..|++|+++|.++.....+.. .| +.+ .++.+. -...|+|+..-.
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G----~~~--~~leel---l~~ADIVI~atG- 318 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM----EG----YQV--VTLEDV---VETADIFVTATG- 318 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cC----cee--ccHHHH---HhcCCEEEECCC-
Confidence 688999999995 444444444468899999988765433322 12 122 122221 245799987532
Q ss_pred cccCCHHHHH-HHHHhccCCCCEEEEE
Q 018194 201 CHAPKLEDVY-AEVFRVLKPGSLYVSY 226 (359)
Q Consensus 201 ~~~~~~~~~l-~~~~~~LkpgG~l~~~ 226 (359)
. ..++ .+....+|||++++-+
T Consensus 319 ----t-~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 319 ----N-KDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred ----c-ccccCHHHHhccCCCcEEEEc
Confidence 1 2234 4788899999999853
No 399
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=85.95 E-value=2.1 Score=39.78 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=62.1
Q ss_pred HhcCCCCCCEEEEECCC-CChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CC
Q 018194 116 DLIDVKAGDRILDVGCG-VGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----P-FE 187 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~ 187 (359)
....+.++.+||-.|+| .|..+..+++..+.+ |++++.++...+.+++ .+.. .++..+-.+. . .+
T Consensus 176 ~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~---~vv~~~~~~~~~~l~~~~~ 248 (363)
T cd08279 176 NTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT---HTVNASEDDAVEAVRDLTD 248 (363)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe---EEeCCCCccHHHHHHHHcC
Confidence 34566788899998875 355667777767775 9999998887766643 2321 2222111110 0 12
Q ss_pred CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
...+|+++.... ....+..+.+.|+++|+++...
T Consensus 249 ~~~vd~vld~~~------~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 249 GRGADYAFEAVG------RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCCCCEEEEcCC------ChHHHHHHHHHhhcCCeEEEEe
Confidence 356888875321 1356788899999999998753
No 400
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=85.73 E-value=2.9 Score=33.62 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=31.2
Q ss_pred EECCCCC--hHHHHHH--h-hcCCEEEEEeCCHHHHHHHHHH--HHHcCCCCCeEEEEcCC
Q 018194 128 DVGCGVG--GPMRAIA--A-HSRANVVGITINEYQVNRARLH--NKKAGLDSLCEVVCGNF 181 (359)
Q Consensus 128 DiGcG~G--~~~~~l~--~-~~~~~v~g~D~s~~~~~~a~~~--~~~~~~~~~i~~~~~d~ 181 (359)
|||++.| .....+. . .++.+|+++|++|..++..+++ +.-......+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 4444443 2 3567999999999999988888 44332223356665544
No 401
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=85.69 E-value=2.6 Score=37.74 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=43.5
Q ss_pred CCCChHHHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE----EEcCCCCCC-----CCCCccceEEec
Q 018194 131 CGVGGPMRAIAAH----SRANVVGITINEYQVNRARLHNKKAGLDSLCEV----VCGNFLKMP-----FEDNHFDGAYSI 197 (359)
Q Consensus 131 cG~G~~~~~l~~~----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~----~~~d~~~~~-----~~~~~fD~v~~~ 197 (359)
.|+|.++..|.++ ...+++.+|.++..+-..++.+....-.+++.+ +.+|+.+.. +....+|+|+-.
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHa 84 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHA 84 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE-
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEC
Confidence 4668888777763 236899999999998888777643322234544 488887743 555689999999
Q ss_pred ccccccC
Q 018194 198 EATCHAP 204 (359)
Q Consensus 198 ~~l~~~~ 204 (359)
.++-|+|
T Consensus 85 AA~KhVp 91 (293)
T PF02719_consen 85 AALKHVP 91 (293)
T ss_dssp -----HH
T ss_pred hhcCCCC
Confidence 9999986
No 402
>PRK05854 short chain dehydrogenase; Provisional
Probab=85.57 E-value=14 Score=33.44 Aligned_cols=78 Identities=15% Similarity=0.075 Sum_probs=49.4
Q ss_pred CCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----C------CC
Q 018194 122 AGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----F------ED 188 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~------~~ 188 (359)
.+.++|=.|++.| ++..+++ ..|++|+.++-+++..+.+.+......-..++.++..|+.+.. + ..
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 3568887777654 4444443 1478999999888776665554443322235888999997743 0 12
Q ss_pred CccceEEecccc
Q 018194 189 NHFDGAYSIEAT 200 (359)
Q Consensus 189 ~~fD~v~~~~~l 200 (359)
+..|+++.+...
T Consensus 92 ~~iD~li~nAG~ 103 (313)
T PRK05854 92 RPIHLLINNAGV 103 (313)
T ss_pred CCccEEEECCcc
Confidence 468988876654
No 403
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=85.46 E-value=5.5 Score=36.51 Aligned_cols=100 Identities=15% Similarity=0.199 Sum_probs=59.6
Q ss_pred hcCCCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-C-CCCCcc
Q 018194 117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M-P-FEDNHF 191 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~f 191 (359)
...+.++.+||=.|+|. |..+..+++..+ .+|++++.++.....+++. +...-+.....+... + . .+...+
T Consensus 161 ~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~i~~~~~~~~~ 236 (345)
T cd08286 161 NGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL----GATHTVNSAKGDAIEQVLELTDGRGV 236 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCceeccccccHHHHHHHHhCCCCC
Confidence 34566788888777642 445556677667 7899999988777666542 321111111111100 0 0 123468
Q ss_pred ceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
|+|+... .. ...+..+.+.|+++|.++.+
T Consensus 237 d~vld~~-----g~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 237 DVVIEAV-----GI-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred CEEEECC-----CC-HHHHHHHHHhccCCcEEEEe
Confidence 9887532 22 33578888999999999864
No 404
>PRK07576 short chain dehydrogenase; Provisional
Probab=85.27 E-value=11 Score=33.01 Aligned_cols=74 Identities=26% Similarity=0.205 Sum_probs=47.0
Q ss_pred CCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 018194 122 AGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----ED 188 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 188 (359)
++.++|-.|. +|.++..+++ ..|++|++++.++..++...+.....+ .++.++..|+.+.. + ..
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4668888875 4555555443 247899999998887665544444332 35678888987632 1 01
Q ss_pred CccceEEecc
Q 018194 189 NHFDGAYSIE 198 (359)
Q Consensus 189 ~~fD~v~~~~ 198 (359)
+..|+++.+.
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 3579988654
No 405
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=85.01 E-value=11 Score=34.93 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=59.5
Q ss_pred cCCCCCCEEEEECCC-CChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCC
Q 018194 118 IDVKAGDRILDVGCG-VGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM------PFEDN 189 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~ 189 (359)
..+.++.+||-.|+| .|..+..+++..+++ +++++.++...+.+++. +.. .++..+-.+. ..+..
T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~----g~~---~v~~~~~~~~~~~l~~~~~~~ 255 (367)
T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL----GAT---HTVNAAKEDAVAAIREITGGR 255 (367)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---eEecCCcccHHHHHHHHhCCC
Confidence 345678888877765 355666667766777 99999988877766432 221 2222211111 01235
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.+|+|+... ... ..+..+.+.|+++|+++.+
T Consensus 256 ~~d~vld~v-----g~~-~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 256 GVDVVVEAL-----GKP-ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CCCEEEEeC-----CCH-HHHHHHHHHHhcCCEEEEE
Confidence 689887542 221 3678889999999998875
No 406
>PRK08324 short chain dehydrogenase; Validated
Probab=84.99 E-value=8.6 Score=39.22 Aligned_cols=101 Identities=24% Similarity=0.134 Sum_probs=62.3
Q ss_pred CCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 018194 122 AGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----D 188 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 188 (359)
.+++||-.|++ |.++..+++ ..|.+|+++|.++..++.+.+..... .++.++.+|+.+.. +. .
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46788888864 344444443 24789999999988776655443321 35788899987632 11 1
Q ss_pred CccceEEecccccccCC-------------------HHHHHHHHHhccCC---CCEEEEE
Q 018194 189 NHFDGAYSIEATCHAPK-------------------LEDVYAEVFRVLKP---GSLYVSY 226 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~-------------------~~~~l~~~~~~Lkp---gG~l~~~ 226 (359)
+.+|+|+.+........ ...+++.+.+.+++ ||.++++
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 36899887765432110 23456666777766 6777764
No 407
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=84.75 E-value=4.5 Score=36.22 Aligned_cols=97 Identities=23% Similarity=0.258 Sum_probs=61.2
Q ss_pred hcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCC
Q 018194 117 LIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FED 188 (359)
Q Consensus 117 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 188 (359)
...+.++.+||-.|| +.|..+..+++..|++|++++.++...+.+++. +.. .+...+-.+.. .+.
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~i~~~~~~ 206 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARAL----GAD---HVIDYRDPDLRERVKALTGG 206 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHc----CCc---eeeecCCccHHHHHHHHcCC
Confidence 445677899999998 345566677777788999999998877766432 221 11111111110 123
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
..+|+++.... ...+..+.+.++++|.++...
T Consensus 207 ~~~d~v~~~~g-------~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 207 RGVDVVYDPVG-------GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred CCcEEEEECcc-------HHHHHHHHHhhccCCEEEEEc
Confidence 45888876432 134566788999999988653
No 408
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=84.69 E-value=1.8 Score=41.26 Aligned_cols=108 Identities=18% Similarity=0.117 Sum_probs=69.7
Q ss_pred CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-------CCCCCccce
Q 018194 122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-------PFEDNHFDG 193 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~fD~ 193 (359)
.+.++|-+|-|.|.+...+.. .+..++++++++|.|++.|++.+.-..-. +..+...|..+. .-.+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence 345788899999998887766 45589999999999999999876432111 222333332221 013457888
Q ss_pred EEeccc---cccc--C--C--HHHHHHHHHhccCCCCEEEEEEeee
Q 018194 194 AYSIEA---TCHA--P--K--LEDVYAEVFRVLKPGSLYVSYEWVT 230 (359)
Q Consensus 194 v~~~~~---l~~~--~--~--~~~~l~~~~~~LkpgG~l~~~~~~~ 230 (359)
+...-- .+-+ | . -..+|..+...|.|.|.+++.-.+.
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 764210 1111 1 1 3478899999999999998754333
No 409
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.61 E-value=3.3 Score=38.01 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=57.7
Q ss_pred CCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC---CCCCCCCCccce
Q 018194 119 DVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF---LKMPFEDNHFDG 193 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~fD~ 193 (359)
...++.+||-.|+|. |..+..+++..+. .|++++-++...+.+++. +...-+.....+. ... .+.+.+|+
T Consensus 160 ~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~-~~~~~vd~ 234 (341)
T cd05281 160 GDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GADVVINPREEDVVEVKSV-TDGTGVDV 234 (341)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CcceeeCcccccHHHHHHH-cCCCCCCE
Confidence 345778888877753 5566777777777 788888777666655532 2211011111111 011 12346888
Q ss_pred EEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
|+..-. ....+.++.+.|+++|+++..
T Consensus 235 vld~~g------~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 235 VLEMSG------NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred EEECCC------CHHHHHHHHHHhccCCEEEEE
Confidence 876431 134567888999999998864
No 410
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=84.60 E-value=3 Score=38.84 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=61.4
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--CCCC-C-CCCCC
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCG--NFLK-M-PFEDN 189 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~ 189 (359)
....+.++.+||=.|+|. |..+..+++..|. .|++++.++...+.+++. |...-+..... +... + ....+
T Consensus 177 ~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~l~~~~~~ 252 (365)
T cd05279 177 NTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL----GATECINPRDQDKPIVEVLTEMTDG 252 (365)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCCeecccccccchHHHHHHHHhCC
Confidence 445677889999888753 4555666776676 488899888888777542 32211111111 1100 0 01124
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccC-CCCEEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLK-PGSLYVSYE 227 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 227 (359)
.+|+|+-... . ...+....+.|+ ++|.++...
T Consensus 253 ~~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 253 GVDYAFEVIG-----S-ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred CCcEEEECCC-----C-HHHHHHHHHHhccCCCEEEEEe
Confidence 5888875321 1 346778888999 999998753
No 411
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=84.39 E-value=23 Score=35.67 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=56.2
Q ss_pred CEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEecc
Q 018194 124 DRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYSIE 198 (359)
Q Consensus 124 ~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~ 198 (359)
.+|+=+|||. |..........+.+++.+|.+++.++.+++. ....+.+|..+.. ..-+..|++++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINAI 472 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEEEe
Confidence 5788888874 4433222223467999999999999888652 2578999998753 2234677776643
Q ss_pred cccccCCH--HHHHHHHHhccCCCCEEEE
Q 018194 199 ATCHAPKL--EDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 199 ~l~~~~~~--~~~l~~~~~~LkpgG~l~~ 225 (359)
+|. ...+-...+.+.|.-.++.
T Consensus 473 -----~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 473 -----DDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred -----CCHHHHHHHHHHHHHhCCCCeEEE
Confidence 332 2333344555677766655
No 412
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=84.28 E-value=11 Score=34.55 Aligned_cols=97 Identities=21% Similarity=0.180 Sum_probs=59.1
Q ss_pred cCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEE
Q 018194 118 IDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFEDNHFDGAY 195 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~ 195 (359)
+.+.++.+||=.||| .|..+..+++..+.++++++.+++..+.+++. +.. .++...-.+. ....+.+|+|+
T Consensus 165 ~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~d~v~ 237 (337)
T cd05283 165 NGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKL----GAD---EFIATKDPEAMKKAAGSLDLII 237 (337)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc----CCc---EEecCcchhhhhhccCCceEEE
Confidence 456778888878774 35555666676788999999998887776432 211 1111110000 01135688887
Q ss_pred ecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.... . ...+..+.+.|+++|.++...
T Consensus 238 ~~~g-----~-~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 238 DTVS-----A-SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred ECCC-----C-cchHHHHHHHhcCCCEEEEEe
Confidence 5332 1 124677889999999998753
No 413
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=84.22 E-value=3.4 Score=36.68 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=39.1
Q ss_pred cCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 018194 118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK 167 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~ 167 (359)
+.+.++.+|.-+|+|.-.....+++.| ++|.++|+++..+...+-+.+.
T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr~P-a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSRAP-ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred HhcCCCcEEEEecCCcchHHHHhhcCC-ceeEEEeCCHHHHHHHHHHHHH
Confidence 445678899999999766777777765 6999999999998877665543
No 414
>PRK08265 short chain dehydrogenase; Provisional
Probab=84.20 E-value=12 Score=32.71 Aligned_cols=72 Identities=13% Similarity=0.031 Sum_probs=44.8
Q ss_pred CCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 018194 123 GDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----DN 189 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~ 189 (359)
+.++|-.|+. |.++..+++. .|.+|+.+|.++..++...+.. ..++.++.+|+.+.. +. -+
T Consensus 6 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 6 GKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 5678877754 4455444432 4789999999876554433322 235788899998742 10 14
Q ss_pred ccceEEecccc
Q 018194 190 HFDGAYSIEAT 200 (359)
Q Consensus 190 ~fD~v~~~~~l 200 (359)
..|+++.+...
T Consensus 80 ~id~lv~~ag~ 90 (261)
T PRK08265 80 RVDILVNLACT 90 (261)
T ss_pred CCCEEEECCCC
Confidence 57888776543
No 415
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=84.04 E-value=14 Score=33.61 Aligned_cols=92 Identities=12% Similarity=0.140 Sum_probs=54.5
Q ss_pred CCCEEEEE--CCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccc
Q 018194 122 AGDRILDV--GCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FEDNHFD 192 (359)
Q Consensus 122 ~~~~vLDi--GcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD 192 (359)
++.++|=+ |+| .|..+..+++..++++++++.++...+.+++ .|.. .++..+-.+.. .+...+|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE---YVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEECCCccHHHHHHHHhCCCCCc
Confidence 34445444 443 4667777788778999999999988777765 2321 22222211110 1224588
Q ss_pred eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+|+-.-. . .......+.|++||+++.+.
T Consensus 215 ~vid~~g-----~--~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 215 IFFDAVG-----G--GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred EEEECCC-----c--HHHHHHHHhhCCCCEEEEEE
Confidence 8875322 1 22355678899999998754
No 416
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=83.83 E-value=14 Score=33.85 Aligned_cols=96 Identities=23% Similarity=0.400 Sum_probs=59.3
Q ss_pred HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C-CCCCC
Q 018194 116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK---M-PFEDN 189 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~-~~~~~ 189 (359)
....+.++.+||=.|+ +.|..+..+++..++++++++.+. ..+.+++ .+.. .+...+-.. . .....
T Consensus 171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~ 242 (350)
T cd08274 171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRA----LGAD---TVILRDAPLLADAKALGGE 242 (350)
T ss_pred hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHh----cCCe---EEEeCCCccHHHHHhhCCC
Confidence 4456778999999997 346677777887788999988554 4444432 3321 111111000 0 01234
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.+|+|+.... ...+..+.+.|+++|.++.+
T Consensus 243 ~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 243 PVDVVADVVG-------GPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCcEEEecCC-------HHHHHHHHHHhccCCEEEEe
Confidence 6898876432 13577889999999998864
No 417
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=83.71 E-value=4.3 Score=33.65 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=55.7
Q ss_pred EEEEECCCC-Ch-HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc-------C-CC--------CCeEEEEcCCCCCCC
Q 018194 125 RILDVGCGV-GG-PMRAIAAHSRANVVGITINEYQVNRARLHNKKA-------G-LD--------SLCEVVCGNFLKMPF 186 (359)
Q Consensus 125 ~vLDiGcG~-G~-~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~~ 186 (359)
+|.=||+|+ |. ++..++. .|.+|+.+|.+++.++.++++.... + +. .+++ ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHh-CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 356678875 32 3333444 4889999999999998888776541 1 11 2343 23444332
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
...|+|+=.- .+.++-..++++++.+.+.|+-.|..
T Consensus 77 --~~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilas 112 (180)
T PF02737_consen 77 --VDADLVIEAI-PEDLELKQELFAELDEICPPDTILAS 112 (180)
T ss_dssp --CTESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE
T ss_pred --hhhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEe
Confidence 2457765432 23333467899999999999988765
No 418
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.59 E-value=16 Score=32.74 Aligned_cols=95 Identities=22% Similarity=0.260 Sum_probs=62.5
Q ss_pred hcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCC
Q 018194 117 LIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFEDN 189 (359)
Q Consensus 117 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~ 189 (359)
.....++.+||=.|+ +.|..+..+++..|++|++++.+++..+.+++ .|.. .+.. +-.+. .. ..
T Consensus 137 ~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~-~~~~~~~~i~~~-~~ 207 (320)
T cd08243 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGAD---EVVI-DDGAIAEQLRAA-PG 207 (320)
T ss_pred hcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc---EEEe-cCccHHHHHHHh-CC
Confidence 345677889998886 45677788888778999999999887666643 2321 1111 11111 12 35
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.+|+++.... . ..+.++.+.|+++|+++...
T Consensus 208 ~~d~vl~~~~-----~--~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 208 GFDKVLELVG-----T--ATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred CceEEEECCC-----h--HHHHHHHHHhccCCEEEEEc
Confidence 6888875332 2 45778899999999988653
No 419
>PRK10083 putative oxidoreductase; Provisional
Probab=83.36 E-value=7 Score=35.68 Aligned_cols=103 Identities=12% Similarity=0.042 Sum_probs=58.7
Q ss_pred HHhcCCCCCCEEEEECCCC-ChHHHHHHhh-cCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCCc
Q 018194 115 VDLIDVKAGDRILDVGCGV-GGPMRAIAAH-SRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MPFEDNH 190 (359)
Q Consensus 115 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~ 190 (359)
.....+.++.+||=.|+|. |..+..+++. .|+ .++++|.+++..+.+++. |...-+.....++.. +.-....
T Consensus 153 ~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~~ 228 (339)
T PRK10083 153 TGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGIK 228 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCCC
Confidence 3445677889999999653 4455556663 466 588899998888776653 221101111111111 0001112
Q ss_pred cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+|+|+-... . ...+.+..+.|+++|+++.+.
T Consensus 229 ~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 229 PTLIIDAAC-----H-PSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred CCEEEECCC-----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 456554221 1 346788899999999998753
No 420
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.18 E-value=4.3 Score=36.64 Aligned_cols=99 Identities=19% Similarity=0.163 Sum_probs=59.9
Q ss_pred HhcCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC----CCCC--CCCC
Q 018194 116 DLIDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN----FLKM--PFED 188 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d----~~~~--~~~~ 188 (359)
+...+.||++|-=+|.| -|.++..+|+..|.+|+++|-+..--+.+-++ .|-. .|+..- ...- ..-+
T Consensus 175 k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~---LGAd---~fv~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 175 KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS---LGAD---VFVDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred HHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh---cCcc---eeEEecCCHHHHHHHHHhhc
Confidence 44466789888777754 68899999998899999999997554444433 2311 222211 1100 0012
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
.-.|.|.+. -...+..+.+.||++|.++++-.
T Consensus 249 g~~~~v~~~--------a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 249 GGIDTVSNL--------AEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred Ccceeeeec--------cccchHHHHHHhhcCCEEEEEeC
Confidence 223333322 22345677889999999998643
No 421
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=83.12 E-value=18 Score=31.67 Aligned_cols=117 Identities=17% Similarity=0.238 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHHH------HHHhcCCCCCCEEEEE--CCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 018194 99 PGKSHRDATRLHEEM------AVDLIDVKAGDRILDV--GCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL 170 (359)
Q Consensus 99 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~vLDi--GcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~ 170 (359)
...++..+...+.+. +.+..++++|..||-- ..|.|.+..++++..+.++++.--+.+-.+.|++.- .
T Consensus 117 e~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG----~ 192 (336)
T KOG1197|consen 117 EAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENG----A 192 (336)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcC----C
Confidence 344455444444332 3445588899988765 456778888888877899999988888888887653 3
Q ss_pred CCCeEEEEcCCCCC--CCC-CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 171 DSLCEVVCGNFLKM--PFE-DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 171 ~~~i~~~~~d~~~~--~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..-|.+...|+.+- .+. ....|+++-.-. ...+..-...|||+|.++-+
T Consensus 193 ~h~I~y~~eD~v~~V~kiTngKGVd~vyDsvG-------~dt~~~sl~~Lk~~G~mVSf 244 (336)
T KOG1197|consen 193 EHPIDYSTEDYVDEVKKITNGKGVDAVYDSVG-------KDTFAKSLAALKPMGKMVSF 244 (336)
T ss_pred cceeeccchhHHHHHHhccCCCCceeeecccc-------chhhHHHHHHhccCceEEEe
Confidence 32355555555431 122 345676654322 23456677889999999864
No 422
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=82.58 E-value=18 Score=33.17 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=58.9
Q ss_pred CCCCCEEEEECCC-CChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccc
Q 018194 120 VKAGDRILDVGCG-VGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFEDNHFD 192 (359)
Q Consensus 120 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD 192 (359)
..++.+||-.|+| .|..+..+++..|+ .|++++.++...+.+++. |.. .++...-... ....+.+|
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA----GAD---VVVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---EEecCCCccHHHHHHHHhCCCCc
Confidence 3467889988875 35566677777777 799999988887776432 321 1211111110 01112578
Q ss_pred eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+++.... ....+..+.+.|+++|.++...
T Consensus 246 ~vid~~g------~~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 246 AVIDFVN------NSATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred EEEECCC------CHHHHHHHHHHhhcCCeEEEEC
Confidence 8875321 1346788899999999998653
No 423
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=82.52 E-value=3.7 Score=37.27 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=60.2
Q ss_pred HhcCCCCCCEEEEECCC--CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------
Q 018194 116 DLIDVKAGDRILDVGCG--VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-------- 185 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------- 185 (359)
....+.++.+||-.|++ .|..+..++...+.+++.++.++...+.++.. +.. ..+ +..+..
T Consensus 160 ~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~~~--~~~---~~~~~~~~~~~~~~ 230 (342)
T cd08266 160 TRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKEL----GAD--YVI---DYRKEDFVREVREL 230 (342)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC--eEE---ecCChHHHHHHHHH
Confidence 34566778899988875 45566666666788999999998877665432 211 111 111100
Q ss_pred CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.....+|+++.... ...+..+.+.|+++|.++..
T Consensus 231 ~~~~~~d~~i~~~g-------~~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 231 TGKRGVDVVVEHVG-------AATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred hCCCCCcEEEECCc-------HHHHHHHHHHhhcCCEEEEE
Confidence 12346888876543 13467778899999998875
No 424
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=82.14 E-value=17 Score=33.30 Aligned_cols=97 Identities=20% Similarity=0.202 Sum_probs=61.4
Q ss_pred hcCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCC-----CCCCC
Q 018194 117 LIDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF-LKM-----PFEDN 189 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~-----~~~~~ 189 (359)
...+.++.+||=.|+| .|..+..+++..|.+|++++.+++..+.+++ .|.. .++...- .+. .+..+
T Consensus 160 ~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~~~~~~ 232 (345)
T cd08260 160 QARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE----LGAV---ATVNASEVEDVAAAVRDLTGG 232 (345)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH----hCCC---EEEccccchhHHHHHHHHhCC
Confidence 4456778899999875 2456666777678899999999888777743 2321 2221111 111 01112
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.+|+++.... . ...+....+.|+++|.++..
T Consensus 233 ~~d~vi~~~g-----~-~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 233 GAHVSVDALG-----I-PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred CCCEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEe
Confidence 6888876421 1 34677889999999998864
No 425
>PRK10458 DNA cytosine methylase; Provisional
Probab=82.13 E-value=9.7 Score=36.74 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=40.8
Q ss_pred CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM 184 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 184 (359)
..+++|+-||.|.+..-+-....-.|.++|+++...+.-+.++.. .+.......|+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~---~p~~~~~~~DI~~i 146 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC---DPATHRFNEDIRDI 146 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC---CCccceeccChhhC
Confidence 469999999999999888664333667899999888776665421 11234455666654
No 426
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=81.97 E-value=17 Score=33.16 Aligned_cols=97 Identities=20% Similarity=0.286 Sum_probs=61.1
Q ss_pred hcCCCCCCEEEEECCC-CChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCC
Q 018194 117 LIDVKAGDRILDVGCG-VGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----P-FED 188 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~ 188 (359)
.+.+.++.+||=.|+| .|..+..+++..+.+ +++++.++...+.+++ .+.. .++..+-.+. . .+.
T Consensus 160 ~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~~ 232 (343)
T cd08235 160 KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGAD---YTIDAAEEDLVEKVRELTDG 232 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---EEecCCccCHHHHHHHHhCC
Confidence 3467788899988875 455666677777788 9999988888776643 2321 2222111110 0 123
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..+|+|+-... -...+..+.+.|+++|+++..
T Consensus 233 ~~vd~vld~~~------~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 233 RGADVVIVATG------SPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred cCCCEEEECCC------ChHHHHHHHHHhhcCCEEEEE
Confidence 45888875422 124677788999999999864
No 427
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=81.91 E-value=14 Score=33.69 Aligned_cols=97 Identities=20% Similarity=0.241 Sum_probs=57.3
Q ss_pred CCCCCEEEEECCC-CChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C--CCCCCccceE
Q 018194 120 VKAGDRILDVGCG-VGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M--PFEDNHFDGA 194 (359)
Q Consensus 120 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~v 194 (359)
..++.+||-.|+| .|..+..+++..|.+ |++++-++...+.+++. +...-+.....++.+ + ......+|+|
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 4577888877765 355666677767776 88888887766665443 221001111111100 0 0123568988
Q ss_pred EecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+-... ....+.++.+.|+++|+++..
T Consensus 235 ld~~g------~~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 235 LEMSG------APKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred EECCC------CHHHHHHHHHhhcCCCEEEEE
Confidence 76421 134678889999999998764
No 428
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=81.52 E-value=22 Score=31.42 Aligned_cols=93 Identities=25% Similarity=0.284 Sum_probs=56.7
Q ss_pred CCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceE
Q 018194 119 DVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGA 194 (359)
Q Consensus 119 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v 194 (359)
.+.++.+||=.|+ +.|..+..+++..+.+++.++.++ ..+.+++ .+.. .+....-.+. ......+|++
T Consensus 141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~d~v 212 (309)
T cd05289 141 GLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS----LGAD---EVIDYTKGDFERAAAPGGVDAV 212 (309)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH----cCCC---EEEeCCCCchhhccCCCCceEE
Confidence 3667889998886 345666777777788999888766 5554432 2321 2222111111 1123457888
Q ss_pred EecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+... .. ..+..+.+.|+++|.++..
T Consensus 213 ~~~~-----~~--~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 213 LDTV-----GG--ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred EECC-----ch--HHHHHHHHHHhcCcEEEEE
Confidence 7532 12 2677888999999998864
No 429
>PRK07109 short chain dehydrogenase; Provisional
Probab=81.33 E-value=24 Score=32.33 Aligned_cols=75 Identities=19% Similarity=0.122 Sum_probs=49.0
Q ss_pred CCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C---------CCC
Q 018194 123 GDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-F---------EDN 189 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~ 189 (359)
+.+||=.|++ |.++..+++ ..|.+|+.++-++..++...+.+...+ .++.++.+|+.+.. . .-+
T Consensus 8 ~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 5678877765 444444443 147899999999887776665555443 35788899987742 0 014
Q ss_pred ccceEEecccc
Q 018194 190 HFDGAYSIEAT 200 (359)
Q Consensus 190 ~fD~v~~~~~l 200 (359)
..|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68988876554
No 430
>PRK08267 short chain dehydrogenase; Provisional
Probab=81.25 E-value=14 Score=32.15 Aligned_cols=72 Identities=15% Similarity=0.038 Sum_probs=46.1
Q ss_pred EEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC------CCc
Q 018194 125 RILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE------DNH 190 (359)
Q Consensus 125 ~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~------~~~ 190 (359)
++|-.|++ |.++..+++. .|.+|+.++.++..++....... ..++.++++|+.+.. +. .+.
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57777765 4444444431 46899999998877665544332 236889999998742 10 356
Q ss_pred cceEEeccccc
Q 018194 191 FDGAYSIEATC 201 (359)
Q Consensus 191 fD~v~~~~~l~ 201 (359)
+|+|+.+....
T Consensus 78 id~vi~~ag~~ 88 (260)
T PRK08267 78 LDVLFNNAGIL 88 (260)
T ss_pred CCEEEECCCCC
Confidence 79888766543
No 431
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=80.62 E-value=24 Score=32.87 Aligned_cols=102 Identities=21% Similarity=0.161 Sum_probs=63.3
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-------CC
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-------PF 186 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~ 186 (359)
....+.++.+||-.|+|. |..+..+++..|. +|+++|.++...+.+++. +. ..+ |..+. .+
T Consensus 170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~----g~----~~v--~~~~~~~~~~i~~~ 239 (375)
T cd08282 170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESI----GA----IPI--DFSDGDPVEQILGL 239 (375)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC----eEe--ccCcccHHHHHHHh
Confidence 345667888888888763 5566677776676 799999988877766543 21 111 11110 01
Q ss_pred CCCccceEEeccccccc-----CCHHHHHHHHHhccCCCCEEEEEE
Q 018194 187 EDNHFDGAYSIEATCHA-----PKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
....+|+|+-...-.-. .+....+.++.++|+++|.+.+..
T Consensus 240 ~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 240 EPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred hCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 12457888764321110 133456888999999999997654
No 432
>PRK07904 short chain dehydrogenase; Provisional
Probab=80.25 E-value=13 Score=32.57 Aligned_cols=78 Identities=24% Similarity=0.132 Sum_probs=48.3
Q ss_pred CCCCEEEEECCCCChHHHHHHh----hcCCEEEEEeCCHHH-HHHHHHHHHHcCCCCCeEEEEcCCCCCC---------C
Q 018194 121 KAGDRILDVGCGVGGPMRAIAA----HSRANVVGITINEYQ-VNRARLHNKKAGLDSLCEVVCGNFLKMP---------F 186 (359)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~l~~----~~~~~v~g~D~s~~~-~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------~ 186 (359)
..+.+||-.|++. .++..+++ ..+.+|+.++-+++. ++...+.....+ ..+++++.+|+.+.. .
T Consensus 6 ~~~~~vlItGas~-giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 6 GNPQTILLLGGTS-EIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCCcEEEEEcCCc-HHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence 3466899888854 44544443 334799999887764 555544444433 236889999987643 1
Q ss_pred CCCccceEEecccc
Q 018194 187 EDNHFDGAYSIEAT 200 (359)
Q Consensus 187 ~~~~fD~v~~~~~l 200 (359)
..+..|+++.+...
T Consensus 84 ~~g~id~li~~ag~ 97 (253)
T PRK07904 84 AGGDVDVAIVAFGL 97 (253)
T ss_pred hcCCCCEEEEeeec
Confidence 11468987765433
No 433
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=79.97 E-value=27 Score=31.83 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=57.5
Q ss_pred cCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCC
Q 018194 118 IDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FEDN 189 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~ 189 (359)
....++.+||=.|+|. |..+..+++..++ ++++++.+++....+++ .|. ..+..+-.+.. .+..
T Consensus 163 ~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~----~~~~~~~~~~~~~l~~~~~~~ 234 (344)
T cd08284 163 AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGA----EPINFEDAEPVERVREATEGR 234 (344)
T ss_pred cCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCC----eEEecCCcCHHHHHHHHhCCC
Confidence 4566788888887642 4455566666775 89999888776665543 231 11111111110 1234
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.+|+++-... . ...+....+.|+++|+++.+
T Consensus 235 ~~dvvid~~~-----~-~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 235 GADVVLEAVG-----G-AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred CCCEEEECCC-----C-HHHHHHHHHhcccCCEEEEE
Confidence 6888875321 1 34678889999999998865
No 434
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=79.72 E-value=30 Score=30.86 Aligned_cols=98 Identities=18% Similarity=0.124 Sum_probs=59.2
Q ss_pred hcCCCCCCEEEEECCC-CChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCC
Q 018194 117 LIDVKAGDRILDVGCG-VGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FED 188 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 188 (359)
...+.++.+||=.|+| .|..+..+++..|++ +++++-+++..+.+++ .+.. .+....-.++. .+.
T Consensus 124 ~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~l~~~~~~ 196 (312)
T cd08269 124 RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARE----LGAT---EVVTDDSEAIVERVRELTGG 196 (312)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEecCCCcCHHHHHHHHcCC
Confidence 4566788888888754 244555666667888 9999888876664433 2321 22221111110 123
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
..+|+++.... ....+....+.|+++|.++.+.
T Consensus 197 ~~vd~vld~~g------~~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 197 AGADVVIEAVG------HQWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred CCCCEEEECCC------CHHHHHHHHHHhccCCEEEEEc
Confidence 45888876431 1346778889999999998753
No 435
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=79.53 E-value=25 Score=31.20 Aligned_cols=96 Identities=28% Similarity=0.321 Sum_probs=61.9
Q ss_pred hcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCC
Q 018194 117 LIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----P-FED 188 (359)
Q Consensus 117 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~ 188 (359)
...+.++.+||=.|+ +.|..+..+++..|++|++++.++...+.+++ .+.. .++..+-... . ...
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 203 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREITGG 203 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHcCC
Confidence 446678889999984 35667777888778999999998888776643 2321 2222111110 0 123
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..+|+++.... . ..+....+.|+++|.++..
T Consensus 204 ~~~d~vl~~~~-----~--~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 204 RGVDVVYDGVG-----K--DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred CCeeEEEECCC-----c--HhHHHHHHhhccCcEEEEE
Confidence 46888876322 2 3566788999999998864
No 436
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=79.46 E-value=21 Score=32.08 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=55.7
Q ss_pred HhcCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeC--CHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C--CCCCC
Q 018194 116 DLIDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITI--NEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M--PFEDN 189 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~--s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~ 189 (359)
....+.++.+||-.|+| .|..+..+++..+.+|+.+.. ++...+.+++ .+.. .+.....|... + ..+..
T Consensus 158 ~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~l~~~~~~~ 232 (306)
T cd08258 158 ERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKE----LGAD-AVNGGEEDLAELVNEITDGD 232 (306)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHH----hCCc-ccCCCcCCHHHHHHHHcCCC
Confidence 34456678888776653 344556667767888877643 3333443333 2321 11111111100 0 01234
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW 228 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 228 (359)
.+|+++-... ....+....+.|+++|.++...+
T Consensus 233 ~vd~vld~~g------~~~~~~~~~~~l~~~G~~v~~g~ 265 (306)
T cd08258 233 GADVVIECSG------AVPALEQALELLRKGGRIVQVGI 265 (306)
T ss_pred CCCEEEECCC------ChHHHHHHHHHhhcCCEEEEEcc
Confidence 5888875421 13567888999999999987644
No 437
>PRK12939 short chain dehydrogenase; Provisional
Probab=79.29 E-value=17 Score=31.36 Aligned_cols=76 Identities=20% Similarity=0.171 Sum_probs=49.1
Q ss_pred CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 018194 122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----D 188 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 188 (359)
.++++|=.|+ +|.++..+++. .|.+|++++.++..++...+.....+ .++.++.+|+.+.. +. -
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3578886665 45566665542 46899999988877666555544332 46889999997642 10 1
Q ss_pred CccceEEecccc
Q 018194 189 NHFDGAYSIEAT 200 (359)
Q Consensus 189 ~~fD~v~~~~~l 200 (359)
+..|.|+.+...
T Consensus 83 ~~id~vi~~ag~ 94 (250)
T PRK12939 83 GGLDGLVNNAGI 94 (250)
T ss_pred CCCCEEEECCCC
Confidence 467888776543
No 438
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=78.77 E-value=33 Score=30.59 Aligned_cols=99 Identities=27% Similarity=0.403 Sum_probs=54.7
Q ss_pred CCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEe
Q 018194 119 DVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYS 196 (359)
Q Consensus 119 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~ 196 (359)
.+.++.+|+-.|+ +.|..+..+++..+++|++++.+ ...+.++ ..+...-+.....+........+.+|+|+.
T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~ 214 (319)
T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVR----SLGADEVIDYTTEDFVALTAGGEKYDVIFD 214 (319)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHH----HcCCCEeecCCCCCcchhccCCCCCcEEEE
Confidence 4678899999997 35667777888778899998854 5444443 233211011111111000123356898876
Q ss_pred cccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 197 IEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 197 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
...- ........+ ..|+++|.++...
T Consensus 215 ~~~~----~~~~~~~~~-~~l~~~g~~i~~g 240 (319)
T cd08267 215 AVGN----SPFSLYRAS-LALKPGGRYVSVG 240 (319)
T ss_pred CCCc----hHHHHHHhh-hccCCCCEEEEec
Confidence 4321 112222223 3399999998753
No 439
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=78.73 E-value=5.3 Score=36.49 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=58.2
Q ss_pred CCCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC---CC-C-CCCCcc
Q 018194 119 DVKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL---KM-P-FEDNHF 191 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~---~~-~-~~~~~f 191 (359)
...++.+||=.|+|. |..+..+++..+ .+|++++-+++..+.+++ .+.. .++..+-. .+ . .+...+
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~~~~~~~ 236 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD---HVLNASDDVVEEVRELTGGRGA 236 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc---EEEcCCccHHHHHHHHhCCCCC
Confidence 356788999998653 344455666556 799999988887766543 2321 11111110 00 0 122458
Q ss_pred ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
|+|+.... . ...+....+.|+++|+++...
T Consensus 237 dvvld~~g-----~-~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 237 DAVIDFVG-----S-DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred CEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 88875322 1 346788889999999998753
No 440
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=78.55 E-value=9.1 Score=30.42 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194 106 ATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM 184 (359)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 184 (359)
+|+.....+.......+| -|||+|=|.|..--.|-+ .++..|+.+|---..-. ...|+.-.++.+|+.+.
T Consensus 13 aQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp--------~~~P~~~~~ilGdi~~t 83 (160)
T PF12692_consen 13 AQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHP--------SSTPPEEDLILGDIRET 83 (160)
T ss_dssp HHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-G--------GG---GGGEEES-HHHH
T ss_pred HHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCC--------CCCCchHheeeccHHHH
Confidence 345555666666655454 799999999999888887 47889999996321110 01123346777777652
Q ss_pred -CC---CCCccceEEecccccccCCHH-----HHHHHHHhccCCCCEEEE
Q 018194 185 -PF---EDNHFDGAYSIEATCHAPKLE-----DVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 185 -~~---~~~~fD~v~~~~~l~~~~~~~-----~~l~~~~~~LkpgG~l~~ 225 (359)
+. -....-++++....++ ++.. .+=.-+..+|.|||.++-
T Consensus 84 l~~~~~~g~~a~laHaD~G~g~-~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 84 LPALARFGAGAALAHADIGTGD-KEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHHHHH-S-EEEEEE----S--HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred hHHHHhcCCceEEEEeecCCCC-cchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 11 1122334444333332 2221 122335688999999885
No 441
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=78.42 E-value=19 Score=32.91 Aligned_cols=94 Identities=22% Similarity=0.269 Sum_probs=58.1
Q ss_pred CCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCccc
Q 018194 121 KAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM------PFEDNHFD 192 (359)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~fD 192 (359)
.++.+||-.|+|. |..+..+++..|. +|++++.++...+.+++. |.. .++..+-.+. ......+|
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~---~~~~~~~~~~~~~~~~~~~~~~~d 234 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GAT---RAVNVAKEDLRDVMAELGMTEGFD 234 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc---EEecCccccHHHHHHHhcCCCCCC
Confidence 4678888887753 5566677776777 688888888777665543 221 1111111110 01234688
Q ss_pred eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+|+.... ....+..+.+.|+++|.++...
T Consensus 235 ~v~d~~g------~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 235 VGLEMSG------APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEEECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence 8876321 1346778889999999998764
No 442
>PRK06701 short chain dehydrogenase; Provisional
Probab=78.41 E-value=32 Score=30.75 Aligned_cols=102 Identities=21% Similarity=0.210 Sum_probs=58.0
Q ss_pred CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----
Q 018194 122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEY-QVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE----- 187 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~----- 187 (359)
.++++|-.|++.| ++..+++. .|.+|+.++.++. .++.........+ .++.++.+|+.+.. +.
T Consensus 45 ~~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3568888886544 44444431 3789999887643 3333333333322 35788899987632 11
Q ss_pred CCccceEEeccccccc----C--C--------------HHHHHHHHHhccCCCCEEEEE
Q 018194 188 DNHFDGAYSIEATCHA----P--K--------------LEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~----~--~--------------~~~~l~~~~~~LkpgG~l~~~ 226 (359)
-+..|+|+.+...... . + ...+++.+.+.++++|.++++
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 1357888765543211 0 1 223555666667788887764
No 443
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.24 E-value=9.7 Score=34.83 Aligned_cols=95 Identities=18% Similarity=0.132 Sum_probs=55.6
Q ss_pred CEEEEECCCC-C-hHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH-------cCCC-----CCeEEEEcCCCCCCCCCC
Q 018194 124 DRILDVGCGV-G-GPMRAIAAHSRANVVGITINEYQVNRARLHNKK-------AGLD-----SLCEVVCGNFLKMPFEDN 189 (359)
Q Consensus 124 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~~~-----~~i~~~~~d~~~~~~~~~ 189 (359)
.+|-=||+|+ | .++..++. .|.+|+..|++++.++.++.+... .++. .++++.. |+.+ .-.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~---av~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA-HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEA---CVA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHH---Hhc
Confidence 5788899985 3 34445555 488999999999988776654331 2211 1222211 1111 013
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 224 (359)
..|+|+-. +.+.+.-...+++++-+.++|+..|.
T Consensus 83 ~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 83 DADFIQES-APEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred CCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 45766653 22222235688899999999987443
No 444
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=78.21 E-value=24 Score=31.83 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=60.8
Q ss_pred cCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCc
Q 018194 118 IDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFEDNH 190 (359)
Q Consensus 118 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~ 190 (359)
..+.++.+||=.|+ +.|..+..+++..|+++++++.++...+.+++.. +.. .++..+-.+. ......
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~v~~~~~~~ 214 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL---GFD---AAINYKTPDLAEALKEAAPDG 214 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc---CCc---eEEecCChhHHHHHHHhccCC
Confidence 45667889998884 3566777778877889999999888777665422 221 1221111010 011245
Q ss_pred cceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+|+++.... ...+....+.|+++|.++..
T Consensus 215 ~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 215 IDVYFDNVG-------GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred ceEEEEcch-------HHHHHHHHHhcCCCceEEEE
Confidence 888875321 23678889999999998864
No 445
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=78.18 E-value=13 Score=33.30 Aligned_cols=94 Identities=18% Similarity=0.130 Sum_probs=54.0
Q ss_pred CEEEEECCCC-Ch-HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc----------CC---------CCCeEEEEcCCC
Q 018194 124 DRILDVGCGV-GG-PMRAIAAHSRANVVGITINEYQVNRARLHNKKA----------GL---------DSLCEVVCGNFL 182 (359)
Q Consensus 124 ~~vLDiGcG~-G~-~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~----------~~---------~~~i~~~~~d~~ 182 (359)
.+|.=||+|. |. ++..++. .|.+|+.+|.+++.++.++++.... +. ..++.+. .|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR-TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688889985 32 4444444 4679999999999998776543321 10 0112221 1221
Q ss_pred CCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEE
Q 018194 183 KMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224 (359)
Q Consensus 183 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 224 (359)
. -...|+|+..- .........+++++.+.++|+..++
T Consensus 82 ~----~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S----LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 13468777643 1111224678888888888886554
No 446
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=78.16 E-value=27 Score=34.68 Aligned_cols=83 Identities=13% Similarity=-0.011 Sum_probs=50.9
Q ss_pred hcCCCCCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHc-----C--CCCCeEEEEcCCCCCC-
Q 018194 117 LIDVKAGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKA-----G--LDSLCEVVCGNFLKMP- 185 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~-----~--~~~~i~~~~~d~~~~~- 185 (359)
..+...+.+||-.|+ +|.++..+++. .|.+|++++.+...++...+..... + ...++.++.+|+.+..
T Consensus 74 ~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 345556778887776 46566665542 4689999998887665443332221 1 1135889999998742
Q ss_pred C--CCCccceEEecccc
Q 018194 186 F--EDNHFDGAYSIEAT 200 (359)
Q Consensus 186 ~--~~~~fD~v~~~~~l 200 (359)
+ .-+..|+|+++...
T Consensus 153 I~~aLggiDiVVn~AG~ 169 (576)
T PLN03209 153 IGPALGNASVVICCIGA 169 (576)
T ss_pred HHHHhcCCCEEEEcccc
Confidence 1 11457988876543
No 447
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.02 E-value=7.4 Score=35.63 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=59.2
Q ss_pred hcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----C--CCC
Q 018194 117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM----P--FED 188 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~~~ 188 (359)
...+.++.+||=.|||. |..+..+++..|. .+++++.++...+.+++ .|.. .++...-... . .+.
T Consensus 163 ~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~---~v~~~~~~~~~~~i~~~~~~ 235 (345)
T cd08287 163 SAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT---DIVAERGEEAVARVRELTGG 235 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---eEecCCcccHHHHHHHhcCC
Confidence 34666788888788763 5566677776677 48999988766555543 2321 1111111010 0 123
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
..+|+++.... -...+..+.+.++++|.++...
T Consensus 236 ~~~d~il~~~g------~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 236 VGADAVLECVG------TQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred CCCCEEEECCC------CHHHHHHHHHhhccCCEEEEec
Confidence 45788875321 1457888999999999998753
No 448
>PLN02702 L-idonate 5-dehydrogenase
Probab=78.02 E-value=37 Score=31.34 Aligned_cols=102 Identities=13% Similarity=0.167 Sum_probs=60.8
Q ss_pred HhcCCCCCCEEEEECCC-CChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE--EcCCCC----CC-C
Q 018194 116 DLIDVKAGDRILDVGCG-VGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVV--CGNFLK----MP-F 186 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~--~~d~~~----~~-~ 186 (359)
....+.++.+||=+|+| .|..+..+++..++ .++++|.++...+.+++. +....+.+. ..+... +. .
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~ 250 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL----GADEIVLVSTNIEDVESEVEEIQKA 250 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEecCcccccHHHHHHHHhhh
Confidence 44567788899999865 25566677776676 488899888777765543 322111110 011100 00 1
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
..+.+|+|+-... . ...+....+.|+++|+++.+.
T Consensus 251 ~~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 251 MGGGIDVSFDCVG-----F-NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred cCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEc
Confidence 1245788876421 1 246788899999999988653
No 449
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=77.99 E-value=30 Score=30.76 Aligned_cols=91 Identities=25% Similarity=0.228 Sum_probs=59.3
Q ss_pred CCCCCEEEEECCC--CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEec
Q 018194 120 VKAGDRILDVGCG--VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSI 197 (359)
Q Consensus 120 ~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~ 197 (359)
..++.+||=.|+. .|..+..+++..|+++++++.+++..+.+++ .|.. ..+ .+..+ +..+.+|+++-.
T Consensus 130 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~-~~~~~--~~~~~~d~vl~~ 199 (305)
T cd08270 130 PLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE----LGAA---EVV-VGGSE--LSGAPVDLVVDS 199 (305)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEE-ecccc--ccCCCceEEEEC
Confidence 3358899988883 4566677777778899999988887777654 2322 111 11111 122468888754
Q ss_pred ccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 198 EATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.. . ..+....+.|+++|+++...
T Consensus 200 ~g-----~--~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 200 VG-----G--PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred CC-----c--HHHHHHHHHhcCCCEEEEEe
Confidence 21 1 25688899999999998753
No 450
>PRK06181 short chain dehydrogenase; Provisional
Probab=77.93 E-value=23 Score=30.88 Aligned_cols=74 Identities=18% Similarity=0.074 Sum_probs=46.1
Q ss_pred CEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CCc
Q 018194 124 DRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----DNH 190 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~~ 190 (359)
.+||-.|+ +|.++..+++ ..+.+|++++.++...+...+..... ..++.++.+|+.+.. +. -+.
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH--GGEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46776664 4555555544 24689999999887666554444333 346788889987742 00 135
Q ss_pred cceEEecccc
Q 018194 191 FDGAYSIEAT 200 (359)
Q Consensus 191 fD~v~~~~~l 200 (359)
.|.|+.+...
T Consensus 79 id~vi~~ag~ 88 (263)
T PRK06181 79 IDILVNNAGI 88 (263)
T ss_pred CCEEEECCCc
Confidence 7888876544
No 451
>PRK09072 short chain dehydrogenase; Provisional
Probab=77.73 E-value=27 Score=30.44 Aligned_cols=75 Identities=13% Similarity=0.079 Sum_probs=47.8
Q ss_pred CCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C----CCCc
Q 018194 123 GDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F----EDNH 190 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----~~~~ 190 (359)
+.++|=.|++.| ++..+++ ..|.+|++++.++..++...... . .+.++.++..|+.+.. + ..+.
T Consensus 5 ~~~vlItG~s~~-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~--~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 5 DKRVLLTGASGG-IGQALAEALAAAGARLLLVGRNAEKLEALAARL-P--YPGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-h--cCCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 567888876643 4444433 14789999999987776555443 1 2346888999987742 0 0145
Q ss_pred cceEEeccccc
Q 018194 191 FDGAYSIEATC 201 (359)
Q Consensus 191 fD~v~~~~~l~ 201 (359)
.|.++.+....
T Consensus 81 id~lv~~ag~~ 91 (263)
T PRK09072 81 INVLINNAGVN 91 (263)
T ss_pred CCEEEECCCCC
Confidence 79888776543
No 452
>PRK06128 oxidoreductase; Provisional
Probab=77.61 E-value=41 Score=30.15 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=58.0
Q ss_pred CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHH--HHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC----
Q 018194 122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEY--QVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE---- 187 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~---- 187 (359)
.+++||=.|+. |.++..+++. .|.+|+.+..+.. ..+...+.....+ .++.++.+|+.+.. +.
T Consensus 54 ~~k~vlITGas-~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 54 QGRKALITGAD-SGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCCEEEEecCC-CcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 35688888864 4444444432 4678887765433 2233333333332 35778889987632 10
Q ss_pred -CCccceEEecccccc----cC-----CH-----------HHHHHHHHhccCCCCEEEEE
Q 018194 188 -DNHFDGAYSIEATCH----AP-----KL-----------EDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 188 -~~~fD~v~~~~~l~~----~~-----~~-----------~~~l~~~~~~LkpgG~l~~~ 226 (359)
-+..|+++.+..... +. ++ ..+++.+.+.++++|.++..
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 136799887765432 11 11 23556667777888887764
No 453
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=77.44 E-value=13 Score=33.72 Aligned_cols=96 Identities=20% Similarity=0.190 Sum_probs=61.5
Q ss_pred cCCCCCCEEEEECCC--CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194 118 IDVKAGDRILDVGCG--VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY 195 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~ 195 (359)
+...++.+||=.|++ .|..+..+++..|.+++.++.+++..+.+++. ...-+..+ .+ ..++.. . +.+|+++
T Consensus 158 ~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~v~~--~--~~~d~~l 230 (334)
T PRK13771 158 AGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGS-KF-SEEVKK--I--GGADIVI 230 (334)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch-hH-HHHHHh--c--CCCcEEE
Confidence 366788899999884 46677788887789999999999888877554 21111110 00 001111 1 2478777
Q ss_pred ecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.... . ..+..+.+.|+++|.++...
T Consensus 231 d~~g-----~--~~~~~~~~~l~~~G~~v~~g 255 (334)
T PRK13771 231 ETVG-----T--PTLEESLRSLNMGGKIIQIG 255 (334)
T ss_pred EcCC-----h--HHHHHHHHHHhcCCEEEEEe
Confidence 5422 1 24678888999999988754
No 454
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=77.10 E-value=12 Score=34.15 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=50.2
Q ss_pred cCCCCCCEEEEECCCC-ChHHHHHHhh-cCCEEEEEeCCHHHHH-HHHHHHHHcCCCCCeEEEEc-CCCCCCCCCCccce
Q 018194 118 IDVKAGDRILDVGCGV-GGPMRAIAAH-SRANVVGITINEYQVN-RARLHNKKAGLDSLCEVVCG-NFLKMPFEDNHFDG 193 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~g~D~s~~~~~-~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fD~ 193 (359)
++..++.+|+-+|+|. |......... ...+|+.+|.++.... .+++ .+. ..... |..+. -..+|+
T Consensus 173 ~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----~g~----~~~~~~~~~~~---l~~aDv 241 (311)
T cd05213 173 FGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----LGG----NAVPLDELLEL---LNEADV 241 (311)
T ss_pred hCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----cCC----eEEeHHHHHHH---HhcCCE
Confidence 3334688999999964 3333222222 2358999999976543 3332 221 22221 11111 135799
Q ss_pred EEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCc
Q 018194 194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTD 232 (359)
Q Consensus 194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 232 (359)
|++.-.-.+. ...+..+.... +++..+++|...+.
T Consensus 242 Vi~at~~~~~---~~~~~~~~~~~-~~~~~~viDlavPr 276 (311)
T cd05213 242 VISATGAPHY---AKIVERAMKKR-SGKPRLIVDLAVPR 276 (311)
T ss_pred EEECCCCCch---HHHHHHHHhhC-CCCCeEEEEeCCCC
Confidence 9887653332 33344443333 33334444655443
No 455
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.73 E-value=39 Score=29.50 Aligned_cols=102 Identities=13% Similarity=-0.026 Sum_probs=59.1
Q ss_pred CCCEEEEECCCCC-hHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C--C
Q 018194 122 AGDRILDVGCGVG-GPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------F--E 187 (359)
Q Consensus 122 ~~~~vLDiGcG~G-~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~--~ 187 (359)
.++.+|-.|+++| .++..+++. -|++|+.++.++...+..++.....+ .+.++.+|+.+.. . .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHH
Confidence 3678999998763 555555542 46899988887654333333322221 2457788887642 0 1
Q ss_pred CCccceEEecccccc-------cC-----CHH-----------HHHHHHHhccCCCCEEEEE
Q 018194 188 DNHFDGAYSIEATCH-------AP-----KLE-----------DVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~-------~~-----~~~-----------~~l~~~~~~LkpgG~l~~~ 226 (359)
-+..|+++.+..... +. ++. .+.+.+...++.+|.++.+
T Consensus 86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 156899887765432 11 112 2345566677778887764
No 456
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=76.72 E-value=13 Score=25.92 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCh-HHHHHHhh--cCCEEEEEeCC
Q 018194 108 RLHEEMAVDLIDVKAGDRILDVGCGVGG-PMRAIAAH--SRANVVGITIN 154 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~--~~~~v~g~D~s 154 (359)
+...+++...-.+..+++||-|||-+|. ++..++.. .++..+|+-..
T Consensus 24 ~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 24 ENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 3344555554455555899999999996 55455442 45777777653
No 457
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=76.64 E-value=29 Score=31.36 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=60.2
Q ss_pred hcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCC
Q 018194 117 LIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FED 188 (359)
Q Consensus 117 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 188 (359)
...+.++.+|+=.|. +.|..+..+++..|+++++++.++...+.+++ .|.. .++..+-.+.. ...
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 207 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKK----AGAW---QVINYREENIVERVKEITGG 207 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC---EEEcCCCCcHHHHHHHHcCC
Confidence 345677888887753 35667777888788999999998887766643 2321 22222211110 122
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..+|+++-... ...+.+..+.++++|+++.+
T Consensus 208 ~~~d~vl~~~~-------~~~~~~~~~~l~~~g~~v~~ 238 (327)
T PRK10754 208 KKVRVVYDSVG-------KDTWEASLDCLQRRGLMVSF 238 (327)
T ss_pred CCeEEEEECCc-------HHHHHHHHHHhccCCEEEEE
Confidence 45787764321 23566788899999999875
No 458
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=76.08 E-value=30 Score=28.15 Aligned_cols=94 Identities=13% Similarity=0.030 Sum_probs=58.1
Q ss_pred CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CC---CCccceEEec
Q 018194 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FE---DNHFDGAYSI 197 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~---~~~fD~v~~~ 197 (359)
++.+|+-|||=+-.....-...++.+++.+|++...- .. +++ .|+.-|..... ++ .++||+|++.
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~--------~~--~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFE--------QF--GGD-EFVFYDYNEPEELPEELKGKFDVVVID 93 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHH--------hc--CCc-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence 4579999999764333222113567999999986542 22 223 57777766521 21 4789999997
Q ss_pred ccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 198 EATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
--+..-+-.......+.-++|+++.+++.
T Consensus 94 PPFl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 94 PPFLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred CCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 65521112345556667777888988874
No 459
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=76.03 E-value=9.8 Score=27.81 Aligned_cols=72 Identities=11% Similarity=0.184 Sum_probs=43.3
Q ss_pred CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccccc
Q 018194 124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA 203 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 203 (359)
.+|| +-||+|..+..++.. .++.+++.|++ +++...+..+.+-....+|+|+..
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k-----------------~~~~~~~~gi~--~~v~a~~~~~~~~~~~~~Dvill~------ 57 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK-----------------MNKAAEEYGVP--VKIAAGSYGAAGEKLDDADVVLLA------ 57 (95)
T ss_pred cEEE-EECCCchhHHHHHHH-----------------HHHHHHHCCCc--EEEEEecHHHHHhhcCCCCEEEEC------
Confidence 3566 789988766655542 23444455554 666666665543223568988874
Q ss_pred CCHHHHHHHHHhccCCCC
Q 018194 204 PKLEDVYAEVFRVLKPGS 221 (359)
Q Consensus 204 ~~~~~~l~~~~~~LkpgG 221 (359)
|+....+.++...+.+-|
T Consensus 58 pqi~~~~~~i~~~~~~~~ 75 (95)
T TIGR00853 58 PQVAYMLPDLKKETDKKG 75 (95)
T ss_pred chHHHHHHHHHHHhhhcC
Confidence 455556667777666544
No 460
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=75.98 E-value=6.2 Score=36.50 Aligned_cols=73 Identities=23% Similarity=0.385 Sum_probs=59.4
Q ss_pred HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 018194 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP 185 (359)
Q Consensus 112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 185 (359)
......+...+|.+|+|..|-.|.-+.+++.. ...++.++|.+....+..++.....|.. +++...+|+...+
T Consensus 203 clpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t~ 277 (413)
T KOG2360|consen 203 CLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNTA 277 (413)
T ss_pred cchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCCC
Confidence 44556677788899999999999988888862 3469999999999999988888888764 5677788988753
No 461
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=75.45 E-value=7.1 Score=36.57 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=47.9
Q ss_pred CEEEEECCCC-ChHHH-HHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C--CCCccceEEecc
Q 018194 124 DRILDVGCGV-GGPMR-AIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-F--EDNHFDGAYSIE 198 (359)
Q Consensus 124 ~~vLDiGcG~-G~~~~-~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--~~~~fD~v~~~~ 198 (359)
++||=||||. |.... .|+++...+|+..|-|.+.++.+..... .+++..+.|+.+.+ . --..+|+|+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 5799999964 44333 3455444799999999998887765532 36899999998753 0 013458887754
No 462
>PRK07063 short chain dehydrogenase; Provisional
Probab=75.38 E-value=19 Score=31.30 Aligned_cols=77 Identities=17% Similarity=0.060 Sum_probs=50.1
Q ss_pred CCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 018194 123 GDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----EDN 189 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 189 (359)
++++|-.|++.| ++..+++ ..|++|+.++.++..++...+.....+...++.++..|+.+.. + .-+
T Consensus 7 ~k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 568888887644 4444443 1478999999988877766655544222346888999987642 0 014
Q ss_pred ccceEEecccc
Q 018194 190 HFDGAYSIEAT 200 (359)
Q Consensus 190 ~fD~v~~~~~l 200 (359)
..|.++.+...
T Consensus 86 ~id~li~~ag~ 96 (260)
T PRK07063 86 PLDVLVNNAGI 96 (260)
T ss_pred CCcEEEECCCc
Confidence 68888876654
No 463
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.28 E-value=25 Score=31.57 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=56.7
Q ss_pred CEEEEECCCC-C-hHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc-------CCC---------CCeEEEEcCCCCCC
Q 018194 124 DRILDVGCGV-G-GPMRAIAAHSRANVVGITINEYQVNRARLHNKKA-------GLD---------SLCEVVCGNFLKMP 185 (359)
Q Consensus 124 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-------~~~---------~~i~~~~~d~~~~~ 185 (359)
.+|-=||+|+ | .++..++. .|.+|+.+|.+++.++.+++++.+. |.- .++++ ..|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR-AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHH--
Confidence 3788899985 2 24444555 4789999999999998877664321 110 11221 223221
Q ss_pred CCCCccceEEecccccccCCHHHHHHHHHhcc-CCCCEEEE
Q 018194 186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVL-KPGSLYVS 225 (359)
Q Consensus 186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~ 225 (359)
-...|+|+-. +.+...-...++.++-+++ +|+..+.-
T Consensus 82 --~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~s 119 (286)
T PRK07819 82 --FADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLAS 119 (286)
T ss_pred --hCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1345777654 2333333557888888888 77766653
No 464
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=75.22 E-value=29 Score=34.11 Aligned_cols=82 Identities=16% Similarity=0.243 Sum_probs=59.5
Q ss_pred CCCEEEEECCCCChHHHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCccc
Q 018194 122 AGDRILDVGCGVGGPMRAIAA----HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FEDNHFD 192 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD 192 (359)
.|++||--| |+|..+.++.+ .-..+++.+|.++..+..........--..++.+..+|..+.. +.+-+.|
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 356777666 45777766654 2336999999999888776665554311357899999999853 4455789
Q ss_pred eEEecccccccC
Q 018194 193 GAYSIEATCHAP 204 (359)
Q Consensus 193 ~v~~~~~l~~~~ 204 (359)
+|+-..++-|+|
T Consensus 328 ~VfHAAA~KHVP 339 (588)
T COG1086 328 IVFHAAALKHVP 339 (588)
T ss_pred eEEEhhhhccCc
Confidence 999999999998
No 465
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=75.08 E-value=40 Score=30.23 Aligned_cols=97 Identities=21% Similarity=0.263 Sum_probs=62.1
Q ss_pred HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CC
Q 018194 116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----P-FE 187 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~ 187 (359)
....+.++.+||=.|+ +.|..+..+++..|.++++++.+++..+.+++ .+.. .++...-.+. . ..
T Consensus 136 ~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~ 208 (324)
T cd08244 136 DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA----LGAD---VAVDYTRPDWPDQVREALG 208 (324)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC---EEEecCCccHHHHHHHHcC
Confidence 3456678889988885 45667777888778999999998887776643 2321 1221111110 0 12
Q ss_pred CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
...+|+|+.... . .......+.|+++|.++..
T Consensus 209 ~~~~d~vl~~~g-----~--~~~~~~~~~l~~~g~~v~~ 240 (324)
T cd08244 209 GGGVTVVLDGVG-----G--AIGRAALALLAPGGRFLTY 240 (324)
T ss_pred CCCceEEEECCC-----h--HhHHHHHHHhccCcEEEEE
Confidence 245898876432 2 2347788999999998865
No 466
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.05 E-value=24 Score=31.45 Aligned_cols=93 Identities=18% Similarity=0.198 Sum_probs=54.5
Q ss_pred EEEEECCCC--ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHH-------HcCC-C--------CCeEEEEcCCCCCCC
Q 018194 125 RILDVGCGV--GGPMRAIAAHSRANVVGITINEYQVNRARLHNK-------KAGL-D--------SLCEVVCGNFLKMPF 186 (359)
Q Consensus 125 ~vLDiGcG~--G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~~-~--------~~i~~~~~d~~~~~~ 186 (359)
+|-=||+|. +.++..++.. +.+|+++|++++.++.+++++. +.+. . .++++ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 677788874 3344555554 6799999999999876654322 2221 1 02222 223221
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEE
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 224 (359)
-...|+|+..- .....-...+++++.+.++|+..+.
T Consensus 80 -~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 80 -LKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred -hccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEEE
Confidence 24568877642 1111123588999999999987663
No 467
>PRK06500 short chain dehydrogenase; Provisional
Probab=74.87 E-value=53 Score=28.12 Aligned_cols=72 Identities=15% Similarity=0.067 Sum_probs=43.4
Q ss_pred CCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----------CCC
Q 018194 123 GDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF----------EDN 189 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~~ 189 (359)
+.+||=.|++ |.++..+++. .+.+|++++.++..++...+.. ..++.+++.|..+..- ..+
T Consensus 6 ~k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 6 GKTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 5677777765 4445444432 4689999998876555443322 2357788888876320 014
Q ss_pred ccceEEecccc
Q 018194 190 HFDGAYSIEAT 200 (359)
Q Consensus 190 ~fD~v~~~~~l 200 (359)
..|+++.+...
T Consensus 80 ~id~vi~~ag~ 90 (249)
T PRK06500 80 RLDAVFINAGV 90 (249)
T ss_pred CCCEEEECCCC
Confidence 67888766544
No 468
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=74.82 E-value=5.7 Score=32.81 Aligned_cols=89 Identities=17% Similarity=0.098 Sum_probs=49.5
Q ss_pred CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194 122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT 200 (359)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 200 (359)
.|.+|.=+|+|. |.-...+++..|++|+++|.+......... . .+...++.++ -...|+|+....+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~----~------~~~~~~l~el---l~~aDiv~~~~pl 101 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE----F------GVEYVSLDEL---LAQADIVSLHLPL 101 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH----T------TEEESSHHHH---HHH-SEEEE-SSS
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccc----c------cceeeehhhh---cchhhhhhhhhcc
Confidence 578999999873 444444444578999999999886552111 1 1222233332 1356888776544
Q ss_pred cccCCHHHHHHHHHhccCCCCEEE
Q 018194 201 CHAPKLEDVYAEVFRVLKPGSLYV 224 (359)
Q Consensus 201 ~~~~~~~~~l~~~~~~LkpgG~l~ 224 (359)
.-- ...-+=++....+|||.+|+
T Consensus 102 t~~-T~~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 102 TPE-TRGLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp STT-TTTSBSHHHHHTSTTTEEEE
T ss_pred ccc-cceeeeeeeeeccccceEEE
Confidence 211 01111145678899998776
No 469
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.67 E-value=6.1 Score=36.05 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=45.5
Q ss_pred EEEECCCCChHHHHHHhhcCCEE-EEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEecc
Q 018194 126 ILDVGCGVGGPMRAIAAHSRANV-VGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE-DNHFDGAYSIE 198 (359)
Q Consensus 126 vLDiGcG~G~~~~~l~~~~~~~v-~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~ 198 (359)
|+|+-||.|.++.-+.+. |.++ .++|+++..++..+.++. . .+..+|+.++... -..+|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecC
Confidence 689999999999888764 5655 569999999888777642 2 3456777765421 12478887653
No 470
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=74.40 E-value=46 Score=28.69 Aligned_cols=76 Identities=20% Similarity=0.053 Sum_probs=49.1
Q ss_pred CCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 018194 123 GDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----DN 189 (359)
Q Consensus 123 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~ 189 (359)
+.+||=.|+ +|.++..+++. .+.+|++++.++...+......... ..++.++.+|+.+.. +. .+
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 457776664 56666666652 4679999999888776655544433 246788899987632 00 13
Q ss_pred ccceEEeccccc
Q 018194 190 HFDGAYSIEATC 201 (359)
Q Consensus 190 ~fD~v~~~~~l~ 201 (359)
..|+|+.+....
T Consensus 81 ~~d~vi~~a~~~ 92 (258)
T PRK12429 81 GVDILVNNAGIQ 92 (258)
T ss_pred CCCEEEECCCCC
Confidence 579888766543
No 471
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.13 E-value=44 Score=29.14 Aligned_cols=105 Identities=15% Similarity=0.078 Sum_probs=57.7
Q ss_pred CCCEEEEECCCC-ChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----C
Q 018194 122 AGDRILDVGCGV-GGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----E 187 (359)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 187 (359)
.++++|-.|++. +.++..+++. .|++|+.++.+....+..++...... ..++.++..|+.+.. + .
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 367899999863 5555555542 47899888654321122222222211 235778889987642 0 1
Q ss_pred CCccceEEecccccc-------cC--CHH--------------HHHHHHHhccCCCCEEEEEE
Q 018194 188 DNHFDGAYSIEATCH-------AP--KLE--------------DVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~-------~~--~~~--------------~~l~~~~~~LkpgG~l~~~~ 227 (359)
-+..|+++.+..+.. +. +.+ .+.+.+...++++|.++.+.
T Consensus 85 ~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 85 VGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred CCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 256898876554321 11 111 13345666777888877643
No 472
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=74.07 E-value=48 Score=30.18 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=62.4
Q ss_pred cCCCCCCEEEEECCC--CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----C--CCCC
Q 018194 118 IDVKAGDRILDVGCG--VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM----P--FEDN 189 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~~~~ 189 (359)
+.+.++.+||=.|+| .|..+..+++..+.+|+.++.+++..+.+++ .+.. .++...-.+. . .+..
T Consensus 161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~~ 233 (341)
T cd08297 161 AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE----LGAD---AFVDFKKSDDVEAVKELTGGG 233 (341)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCc---EEEcCCCccHHHHHHHHhcCC
Confidence 467788999998876 5667778888778999999999877666532 2221 1111111010 0 1234
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
.+|+++.... -...+..+.+.|+++|+++...
T Consensus 234 ~vd~vl~~~~------~~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 234 GAHAVVVTAV------SAAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CCCEEEEcCC------chHHHHHHHHHhhcCCEEEEec
Confidence 6888874221 1345678889999999999754
No 473
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.62 E-value=14 Score=33.01 Aligned_cols=95 Identities=16% Similarity=0.101 Sum_probs=53.0
Q ss_pred EEEEECCCC-C-hHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc-------C-C--------CCCeEEEEcCCCCCCC
Q 018194 125 RILDVGCGV-G-GPMRAIAAHSRANVVGITINEYQVNRARLHNKKA-------G-L--------DSLCEVVCGNFLKMPF 186 (359)
Q Consensus 125 ~vLDiGcG~-G-~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~~ 186 (359)
+|.=||+|. | .++..+++ .+.+|+.+|.+++.++.+.++.... + + ..++++ ..|..+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--- 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAV-SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA--- 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH---
Confidence 677788874 2 23444444 3679999999999998877543211 1 0 011222 122211
Q ss_pred CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
.-...|+|+..-. ....-...++.++.+.++|+..+..
T Consensus 78 ~~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 78 AVADADLVIEAVP-EKLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred hhcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1134688876432 1111134677888888888765543
No 474
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=73.39 E-value=14 Score=33.67 Aligned_cols=99 Identities=17% Similarity=0.234 Sum_probs=60.5
Q ss_pred HhcCCCCCCEEEEECCCC-ChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCC--C--CC
Q 018194 116 DLIDVKAGDRILDVGCGV-GGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF-LKMP--F--ED 188 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~--~~ 188 (359)
....+.++.+||=.|+|. |..+..+++. .+.++++++-+++..+.+++. |.. .++...- .+.. + ..
T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~v~~~~ 228 (338)
T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV----GAD---LTINSKRVEDVAKIIQEKT 228 (338)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc----CCc---EEecccccccHHHHHHHhc
Confidence 445677889999999652 5566667775 488999999999988887542 321 1111110 1100 0 01
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+.+|.++.... . ...+..+.+.|+++|.++...
T Consensus 229 ~~~d~vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 229 GGAHAAVVTAV-----A-KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred CCCcEEEEeCC-----C-HHHHHHHHHhccCCCEEEEEe
Confidence 24674432211 1 346788899999999998753
No 475
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=73.27 E-value=68 Score=28.58 Aligned_cols=96 Identities=21% Similarity=0.259 Sum_probs=58.8
Q ss_pred hcCCCCCCEEEEECCC--CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCC
Q 018194 117 LIDVKAGDRILDVGCG--VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FED 188 (359)
Q Consensus 117 ~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 188 (359)
.....++.+|+-.|+. .|..+..+++..+++++.++.++...+.+++ .+.. .+...+....+ ...
T Consensus 139 ~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 211 (328)
T cd08268 139 LAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLA----LGAA---HVIVTDEEDLVAEVLRITGG 211 (328)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----cCCC---EEEecCCccHHHHHHHHhCC
Confidence 3455678899988863 3445555666678899999999877666543 2221 22222211110 112
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..+|+++.... . ..+..+.+.++++|+++..
T Consensus 212 ~~~d~vi~~~~-----~--~~~~~~~~~l~~~g~~v~~ 242 (328)
T cd08268 212 KGVDVVFDPVG-----G--PQFAKLADALAPGGTLVVY 242 (328)
T ss_pred CCceEEEECCc-----h--HhHHHHHHhhccCCEEEEE
Confidence 35888876432 1 3456778899999999864
No 476
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=73.21 E-value=25 Score=31.81 Aligned_cols=95 Identities=14% Similarity=0.028 Sum_probs=55.9
Q ss_pred CEEEEECCCC-Ch-HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC----CCeEEEEcCCCCCCCCCCccceEEec
Q 018194 124 DRILDVGCGV-GG-PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD----SLCEVVCGNFLKMPFEDNHFDGAYSI 197 (359)
Q Consensus 124 ~~vLDiGcG~-G~-~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~fD~v~~~ 197 (359)
++|+=+|+|. |. ++..|++ .|..|+.++-+++.++..++. .|+. ............ +-+.+.||+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR-AGLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh-CCCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCC-cccccccCEEEEE
Confidence 5799999984 44 5666665 467999999987666554432 1110 000111111111 1123578988764
Q ss_pred ccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 198 EATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
-=- .+...+++.+...+.|+..++..
T Consensus 78 vK~---~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 78 CKA---YDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred CCH---HhHHHHHHHHHhhCCCCCEEEEE
Confidence 311 14678889999999999877653
No 477
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=73.08 E-value=19 Score=32.29 Aligned_cols=49 Identities=27% Similarity=0.192 Sum_probs=41.6
Q ss_pred CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 018194 119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA 168 (359)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~ 168 (359)
...++..|||.=+|+|........ .+-.++|+|+++..++.+.++....
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~-~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKN-LGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHH-cCCceEEEecCHHHHHHHHHHHHhh
Confidence 456789999999999988876555 5779999999999999999998754
No 478
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=72.90 E-value=32 Score=30.89 Aligned_cols=96 Identities=22% Similarity=0.301 Sum_probs=60.4
Q ss_pred hcCCCCCCEEEEECC-C-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCC
Q 018194 117 LIDVKAGDRILDVGC-G-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FED 188 (359)
Q Consensus 117 ~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 188 (359)
...+.++.+||=.|+ | .|..+..+++..|++++.+.-+++..+.+++ .+.. .+...+-.+.. .+.
T Consensus 134 ~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~~ 206 (324)
T cd08292 134 FLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA----LGIG---PVVSTEQPGWQDKVREAAGG 206 (324)
T ss_pred hhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh----cCCC---EEEcCCCchHHHHHHHHhCC
Confidence 356778889998876 2 5677778888788998888777776655543 2321 22221111110 122
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
..+|+|+.... . ..+.++.+.|+++|+++..
T Consensus 207 ~~~d~v~d~~g-----~--~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 207 APISVALDSVG-----G--KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred CCCcEEEECCC-----C--hhHHHHHHhhcCCcEEEEE
Confidence 46898875322 2 2457888999999999865
No 479
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=72.77 E-value=20 Score=36.74 Aligned_cols=96 Identities=20% Similarity=0.161 Sum_probs=62.0
Q ss_pred CEEEEECCCC-C-hHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc-------C-CC--------CCeEEEEcCCCCCC
Q 018194 124 DRILDVGCGV-G-GPMRAIAAHSRANVVGITINEYQVNRARLHNKKA-------G-LD--------SLCEVVCGNFLKMP 185 (359)
Q Consensus 124 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~ 185 (359)
.+|.-||+|+ | .++..++...|..|+.+|.+++.++.+..+..+. + +. .++++. .|...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~-- 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG-- 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH--
Confidence 5899999997 3 3555555345889999999999998887655431 1 10 233333 22211
Q ss_pred CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194 186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
-...|+|+=. +.+.+.-..+++.++-++++|+..|.-
T Consensus 387 --~~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilas 423 (708)
T PRK11154 387 --FKHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFAS 423 (708)
T ss_pred --hccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1346777643 344444467999999999999977763
No 480
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=72.76 E-value=19 Score=35.77 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=53.9
Q ss_pred CEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEe
Q 018194 124 DRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYS 196 (359)
Q Consensus 124 ~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~ 196 (359)
.+|+=+||| ..++.+++. .+.+++.+|.+++.++.+++. ....+.+|+.+.. ..-+..|.+++
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 466666665 455555542 467999999999998887642 3688999998742 22346786654
Q ss_pred cccccccCCH-HHHHHHHHhccCCCCEEEE
Q 018194 197 IEATCHAPKL-EDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 197 ~~~l~~~~~~-~~~l~~~~~~LkpgG~l~~ 225 (359)
.-. +|. ...+-...+...|...++.
T Consensus 488 ~~~----~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 488 TIP----NGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred EcC----ChHHHHHHHHHHHHHCCCCeEEE
Confidence 321 121 2223333455677777665
No 481
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=72.73 E-value=72 Score=28.67 Aligned_cols=96 Identities=18% Similarity=0.121 Sum_probs=62.0
Q ss_pred cCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C------CCCC
Q 018194 118 IDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M------PFED 188 (359)
Q Consensus 118 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~------~~~~ 188 (359)
....++.+||=.|+ +.|..+..+++..|.+++.++-+++..+.+++ .+.. .++...-.+ . ..+.
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~ 208 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK----LAAI---ILIRYPDEEGFAPKVKKLTGE 208 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHHHhCC
Confidence 45677889998874 45777788888778888888888888777643 2321 111111000 0 0123
Q ss_pred CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
..+|+++.... ...+..+.+.|+++|.++...
T Consensus 209 ~~~d~~i~~~~-------~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 209 KGVNLVLDCVG-------GSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred CCceEEEECCc-------hHHHHHHHHHhccCCeEEEEe
Confidence 46888876432 346778899999999988643
No 482
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=72.33 E-value=41 Score=30.45 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=57.0
Q ss_pred CCEEEEECC--CCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccceE
Q 018194 123 GDRILDVGC--GVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFEDNHFDGA 194 (359)
Q Consensus 123 ~~~vLDiGc--G~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~v 194 (359)
+.+||=.|+ +.|..+..+++.. |++|+++..+++..+.+++ .|.. .++..+ .+. ....+.+|+|
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~----~g~~---~~~~~~-~~~~~~i~~~~~~~vd~v 220 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLE----LGAH---HVIDHS-KPLKAQLEKLGLEAVSYV 220 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHH----cCCC---EEEECC-CCHHHHHHHhcCCCCCEE
Confidence 789988885 4566777788865 8899999988877766643 2321 222111 111 0223458888
Q ss_pred EecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
+.... -...+....++|+++|+++..
T Consensus 221 l~~~~------~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 221 FSLTH------TDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred EEcCC------cHHHHHHHHHHhccCCEEEEE
Confidence 74311 134567889999999999853
No 483
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.20 E-value=19 Score=32.19 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=54.2
Q ss_pred CEEEEECCCCCh--HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc--------CC---------CCCeEEEEcCCCCC
Q 018194 124 DRILDVGCGVGG--PMRAIAAHSRANVVGITINEYQVNRARLHNKKA--------GL---------DSLCEVVCGNFLKM 184 (359)
Q Consensus 124 ~~vLDiGcG~G~--~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--------~~---------~~~i~~~~~d~~~~ 184 (359)
.+|.=||+|.-. ++..++. .+.+|+.+|.+++.++.++++..+. .+ ..++++ ..|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH
Confidence 368888888532 3344444 4679999999999988887653211 11 012322 2232211
Q ss_pred CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEE
Q 018194 185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224 (359)
Q Consensus 185 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 224 (359)
-...|+|+..-. ....-...+++++...++++-.+.
T Consensus 82 ---~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 82 ---VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred ---hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 134588776432 111224677888888887776553
No 484
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=72.10 E-value=33 Score=30.76 Aligned_cols=93 Identities=17% Similarity=0.094 Sum_probs=52.4
Q ss_pred CEEEEECCCC-Ch-HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCeEEEEcCCCCCCCCCCccceEEecc
Q 018194 124 DRILDVGCGV-GG-PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD---SLCEVVCGNFLKMPFEDNHFDGAYSIE 198 (359)
Q Consensus 124 ~~vLDiGcG~-G~-~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~fD~v~~~~ 198 (359)
++|+=+|+|. |. ++..|++ .+.+|+.++.+++.++..++. ++. ........-..+.. ....+|+|+..-
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQ-AGHDVTLVARRGAHLDALNEN----GLRLEDGEITVPVLAADDPA-ELGPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCeEEEEECChHHHHHHHHc----CCcccCCceeecccCCCChh-HcCCCCEEEEec
Confidence 3688889875 22 4444444 467999999877766654432 221 11100000011111 125689887654
Q ss_pred cccccCCHHHHHHHHHhccCCCCEEEE
Q 018194 199 ATCHAPKLEDVYAEVFRVLKPGSLYVS 225 (359)
Q Consensus 199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~ 225 (359)
-- .+...+++.+...+.++..++.
T Consensus 75 k~---~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 75 KA---YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred cc---ccHHHHHHHHhhhcCCCCEEEE
Confidence 31 2567888888888888776665
No 485
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=71.60 E-value=18 Score=32.27 Aligned_cols=84 Identities=19% Similarity=0.161 Sum_probs=49.5
Q ss_pred EEEEECCCC--ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc
Q 018194 125 RILDVGCGV--GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH 202 (359)
Q Consensus 125 ~vLDiGcG~--G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 202 (359)
+|.=||+|. |.++..+.+. +.+|+++|.++..++.+.+. +. +.....+.. .....|+|+..-...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~~----~~~~aDlVilavp~~- 68 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRESTCERAIER----GL---VDEASTDLS----LLKDCDLVILALPIG- 68 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHC----CC---cccccCCHh----HhcCCCEEEEcCCHH-
Confidence 566678774 3355555553 67999999999887776543 21 111111111 123568887764322
Q ss_pred cCCHHHHHHHHHhccCCCCEE
Q 018194 203 APKLEDVYAEVFRVLKPGSLY 223 (359)
Q Consensus 203 ~~~~~~~l~~~~~~LkpgG~l 223 (359)
...++++++...++|+..+
T Consensus 69 --~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 69 --LLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred --HHHHHHHHHHHhCCCCcEE
Confidence 2356678888888877444
No 486
>PRK06940 short chain dehydrogenase; Provisional
Probab=71.53 E-value=72 Score=28.14 Aligned_cols=98 Identities=19% Similarity=0.140 Sum_probs=58.9
Q ss_pred EEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C----CCCccce
Q 018194 125 RILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F----EDNHFDG 193 (359)
Q Consensus 125 ~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----~~~~fD~ 193 (359)
.+|=-|+ |.++..+++. .|.+|+.+|.++..++...+.....+ .++.++..|+.+.. + ..+..|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4555564 4566666652 36899999998876665554444332 35788889987642 1 1146898
Q ss_pred EEeccccccc-CCH-----------HHHHHHHHhccCCCCEEEEE
Q 018194 194 AYSIEATCHA-PKL-----------EDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 194 v~~~~~l~~~-~~~-----------~~~l~~~~~~LkpgG~l~~~ 226 (359)
++.+...... .++ ..+++.+...++++|.++++
T Consensus 80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 8877654322 122 23456666667777766543
No 487
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=70.99 E-value=14 Score=27.04 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=43.6
Q ss_pred ECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHH
Q 018194 129 VGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLED 208 (359)
Q Consensus 129 iGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 208 (359)
+-||+|..+..+++ ..++.+++.|++ +++...++.+..-....+|+|++. |+...
T Consensus 4 ~~Cg~G~sTS~~~~-----------------ki~~~~~~~~~~--~~v~~~~~~~~~~~~~~~Diil~~------Pqv~~ 58 (96)
T cd05564 4 LVCSAGMSTSILVK-----------------KMKKAAEKRGID--AEIEAVPESELEEYIDDADVVLLG------PQVRY 58 (96)
T ss_pred EEcCCCchHHHHHH-----------------HHHHHHHHCCCc--eEEEEecHHHHHHhcCCCCEEEEC------hhHHH
Confidence 56888876655544 234555555654 666677665543233568988874 45556
Q ss_pred HHHHHHhccCC-CCEEEEE
Q 018194 209 VYAEVFRVLKP-GSLYVSY 226 (359)
Q Consensus 209 ~l~~~~~~Lkp-gG~l~~~ 226 (359)
.+.++.+.+.+ +-.+.+.
T Consensus 59 ~~~~i~~~~~~~~~pv~~I 77 (96)
T cd05564 59 MLDEVKKKAAEYGIPVAVI 77 (96)
T ss_pred HHHHHHHHhccCCCcEEEc
Confidence 66777765544 4445543
No 488
>PRK07806 short chain dehydrogenase; Provisional
Probab=70.96 E-value=67 Score=27.54 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=57.8
Q ss_pred CCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCH-HHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----
Q 018194 122 AGDRILDVGCGVGGPMRAIAA---HSRANVVGITINE-YQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE----- 187 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~----- 187 (359)
.+.++|-.|+. |.++..+++ ..|.+|++++.+. ...+......... ..++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA--GGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 35688888864 445554443 2467898887653 2333333333322 235788889987642 00
Q ss_pred CCccceEEecccccccC-------------CHHHHHHHHHhccCCCCEEEEE
Q 018194 188 DNHFDGAYSIEATCHAP-------------KLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 188 ~~~fD~v~~~~~l~~~~-------------~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
-+..|+++.+....... -...+++.+.+.++.+|.+++.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 13578877654332110 1346777777777777777764
No 489
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=70.88 E-value=48 Score=31.05 Aligned_cols=46 Identities=30% Similarity=0.387 Sum_probs=36.3
Q ss_pred cCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 018194 118 IDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARL 163 (359)
Q Consensus 118 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~ 163 (359)
..+.++.+||=.|+ +.|..+..+++..++++++++.+++..+.+++
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 35677889999997 34667777888778999999999988887765
No 490
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=70.62 E-value=67 Score=28.92 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=61.0
Q ss_pred hcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCC
Q 018194 117 LIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFEDN 189 (359)
Q Consensus 117 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~ 189 (359)
...+.++.+||=.|+ +.|..+..+++..+.+|+.++.+++..+.+++ .+.. .+...+-.+. .....
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~ 206 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKS----LGCD---RPINYKTEDLGEVLKKEYPK 206 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH----cCCc---eEEeCCCccHHHHHHHhcCC
Confidence 345678889998884 35667777888778899999988877766643 2321 1121111110 01124
Q ss_pred ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.+|+|+.... ...+..+.+.|+++|.++..
T Consensus 207 ~vd~v~~~~g-------~~~~~~~~~~l~~~g~~v~~ 236 (329)
T cd08250 207 GVDVVYESVG-------GEMFDTCVDNLALKGRLIVI 236 (329)
T ss_pred CCeEEEECCc-------HHHHHHHHHHhccCCeEEEE
Confidence 5788875321 24678889999999998865
No 491
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=70.41 E-value=78 Score=28.11 Aligned_cols=80 Identities=16% Similarity=0.020 Sum_probs=56.8
Q ss_pred CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcCCCCCC----------CC
Q 018194 122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL-DSLCEVVCGNFLKMP----------FE 187 (359)
Q Consensus 122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~----------~~ 187 (359)
.++.+|--|...|. .+..+++ .|++|+..+.+++.++...+.....+. ..++....+|..+.+ -.
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~-~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~ 85 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAK-AGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK 85 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence 46788888887774 3455555 589999999999998887776655443 356888899987643 11
Q ss_pred -CCccceEEecccccc
Q 018194 188 -DNHFDGAYSIEATCH 202 (359)
Q Consensus 188 -~~~fD~v~~~~~l~~ 202 (359)
.+..|+++.+.....
T Consensus 86 ~~GkidiLvnnag~~~ 101 (270)
T KOG0725|consen 86 FFGKIDILVNNAGALG 101 (270)
T ss_pred hCCCCCEEEEcCCcCC
Confidence 367899888765554
No 492
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=69.68 E-value=1.1 Score=36.79 Aligned_cols=95 Identities=19% Similarity=0.151 Sum_probs=55.1
Q ss_pred CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--------------C-
Q 018194 122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--------------P- 185 (359)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--------------~- 185 (359)
++.+|+=+|.|. |.-+..++...|++++.+|..+..++..+... ..++..+..+. +
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLG--------AYFIEVDYEDHLERKDFDKADYYEHPE 90 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT--------TEESEETTTTTTTSB-CCHHHCHHHCC
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhccc--------CceEEEcccccccccccchhhhhHHHH
Confidence 457999999985 66777777778999999999988777655432 12222221110 1
Q ss_pred -----CC--CCccceEEecccccccCCHHHHHHHHHhccCCCCEEE
Q 018194 186 -----FE--DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224 (359)
Q Consensus 186 -----~~--~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 224 (359)
|. -..+|+|+.......-..+.-+-++..+.||||..++
T Consensus 91 ~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIv 136 (168)
T PF01262_consen 91 SYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIV 136 (168)
T ss_dssp HHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEE
T ss_pred HhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEE
Confidence 00 1346888875544333344555567778888876555
No 493
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=69.61 E-value=66 Score=29.24 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=58.8
Q ss_pred HhcCCCCCCEEEEECCC-CChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---------C
Q 018194 116 DLIDVKAGDRILDVGCG-VGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK---------M 184 (359)
Q Consensus 116 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---------~ 184 (359)
....+.++.+||=.|+| .|..+..+++..|++ +++++.++...+.+++. +.. .++..+-.+ .
T Consensus 155 ~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~i~~~~~~~~~~~~~~~~ 227 (341)
T cd08262 155 RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAM----GAD---IVVDPAADSPFAAWAAELA 227 (341)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc---EEEcCCCcCHHHHHHHHHH
Confidence 34566788899988764 234555666666765 88888888887776543 211 122111110 0
Q ss_pred CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 185 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
....+.+|+|+-... . ...+.++.+.|+++|.++..
T Consensus 228 ~~~~~~~d~vid~~g-----~-~~~~~~~~~~l~~~g~~v~~ 263 (341)
T cd08262 228 RAGGPKPAVIFECVG-----A-PGLIQQIIEGAPPGGRIVVV 263 (341)
T ss_pred HhCCCCCCEEEECCC-----C-HHHHHHHHHHhccCCEEEEE
Confidence 012345888875321 1 23567788899999998865
No 494
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=69.54 E-value=29 Score=25.48 Aligned_cols=80 Identities=10% Similarity=0.088 Sum_probs=44.9
Q ss_pred cccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCC--CCCHHHHHHHHHhCCC
Q 018194 197 IEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPG--LRSYAEITEIAKRVGF 272 (359)
Q Consensus 197 ~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~aGF 272 (359)
..+|-|.+ |..++|..+....+ |.+++.- . +..+....+..+...+-.++..+. ....+.+.+.+.++||
T Consensus 2 mDvLIHYp~~d~~~~l~~La~~t~--~~~ifTf-A---P~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~ 75 (97)
T PF07109_consen 2 MDVLIHYPAEDAAQMLAHLASRTR--GSLIFTF-A---PRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGW 75 (97)
T ss_pred cceEeccCHHHHHHHHHHHHHhcc--CcEEEEE-C---CCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCC
Confidence 34555655 66778888776543 4666531 1 111111122222222222333332 4467899999999999
Q ss_pred eEEEEEecCC
Q 018194 273 EVVKEKDLAK 282 (359)
Q Consensus 273 ~~i~~~~~~~ 282 (359)
++.+.+.++.
T Consensus 76 ~~~r~~ris~ 85 (97)
T PF07109_consen 76 RIGRTERISS 85 (97)
T ss_pred eeeecccccC
Confidence 9998877743
No 495
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=69.39 E-value=9.4 Score=33.45 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHH
Q 018194 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNK 166 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~ 166 (359)
+...|.+.++..+..+++|+=||+|.++..+.. .+..|+.-|+++..+...+....
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHh
Confidence 345566666653678999999999999988766 45799999999998887775544
No 496
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=69.22 E-value=14 Score=33.42 Aligned_cols=92 Identities=22% Similarity=0.236 Sum_probs=57.5
Q ss_pred CCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCC--CCC-CCCCCccceEE
Q 018194 122 AGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC-GNF--LKM-PFEDNHFDGAY 195 (359)
Q Consensus 122 ~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~--~~~-~~~~~~fD~v~ 195 (359)
.+.+||=.|+ +.|..+..+++..|.+|+.++.+++..+.+++ .|.. .+.. .+. ... ......+|+|+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~~d~vl 218 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK----LGAK---EVIPREELQEESIKPLEKQRWAGAV 218 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH----cCCC---EEEcchhHHHHHHHhhccCCcCEEE
Confidence 3668988887 24566677777778899999999887776643 2321 1111 110 000 11234578876
Q ss_pred ecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
-.. .. ..+....+.|+++|+++.+.
T Consensus 219 d~~-----g~--~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 219 DPV-----GG--KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred ECC-----cH--HHHHHHHHHhhcCCEEEEEe
Confidence 432 12 45778899999999998764
No 497
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=69.19 E-value=9 Score=40.92 Aligned_cols=165 Identities=10% Similarity=0.103 Sum_probs=81.3
Q ss_pred cCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEe
Q 018194 118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDNHFDGAYS 196 (359)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~~ 196 (359)
..-..+.++||+|+|.=.=...+.. +...|+.+|.-|-... ...+.....|++.|..... .....+|.+.|
T Consensus 818 ~~~~~~~~~lDLGTGPE~RiLsliP-~~~pvtmvD~RP~ae~-------m~~w~t~T~y~~~DYl~~~~~~~~~~D~vta 889 (1289)
T PF06016_consen 818 TVRTDPDHWLDLGTGPECRILSLIP-PDTPVTMVDTRPFAEP-------MNCWNTQTQYIQADYLSDAWWNGTPFDAVTA 889 (1289)
T ss_dssp CTTCCC-CEEEET--TT-CHHHCS--TTSEEEEEESS--SSS-------CCCCSTTEEEEES-TTSCCGGCC---SEEEE
T ss_pred ccccCcceEEEccCCccceeeeccC-CCCceEEEecCCcccc-------cchhhhcceeeeeccccceeEecCCCCEEEE
Confidence 3333467999999997432222222 3469999998664311 1123456799999998755 34568999999
Q ss_pred ccccccc-----CCHHHHHHHHHhccCCCCE--EEEEEeeeCcccccCchHHHHH----HhhhhcC-CCCCCCCCHHHHH
Q 018194 197 IEATCHA-----PKLEDVYAEVFRVLKPGSL--YVSYEWVTTDKYEAENKEHVDI----IQGIERG-DALPGLRSYAEIT 264 (359)
Q Consensus 197 ~~~l~~~-----~~~~~~l~~~~~~LkpgG~--l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~ 264 (359)
.+.|... -+..+.++.+.+.+++.|. +++.--+........ ....++ ....+.+ .....+.++.++.
T Consensus 890 ilSLGAAaA~a~~tl~~~l~~~l~~~~~~~~~~l~lQLNcPl~~~~~v-~~~LeId~~~~~Y~F~~~~R~EPY~~~~~l~ 968 (1289)
T PF06016_consen 890 ILSLGAAAASANVTLDAGLQQFLSQCVQANVKRLWLQLNCPLDSSRSV-RGLLEIDTTNKTYVFPTLGRVEPYIDPDDLE 968 (1289)
T ss_dssp CTCHHHHHHHCT--HHHHHHHHHHHHHCTT-SEEEEE-B--SSSS--B-TTTEEEETTTTEEEETTTTEEEEB--HHHHH
T ss_pred EeeehhhhhcCCCcHHHHHHHHHHHHHhCCccEEEEEecCCCCCCCCC-CceEEEeccccEEEcCCCCcCCCCCCHHHHH
Confidence 9988754 2688999999999998874 444322221110000 000000 0001111 1112345778888
Q ss_pred HHHHhCCCeEEEEEecCCCCCCchhhhh
Q 018194 265 EIAKRVGFEVVKEKDLAKPPAQPWWTRL 292 (359)
Q Consensus 265 ~~l~~aGF~~i~~~~~~~~~~~~w~~~~ 292 (359)
+++++. |-....+-.+..+...|-.-.
T Consensus 969 ~~i~~~-~P~~s~~w~t~~~~~~Wl~~~ 995 (1289)
T PF06016_consen 969 QAIRAH-FPNASYSWVTLSPDLSWLEYA 995 (1289)
T ss_dssp HHHHHH-STTSEEEEE-TTTTTCCHHHC
T ss_pred HHHHHH-CCCceEEEEeCCCCcchHHHH
Confidence 888776 444444444444445665543
No 498
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.05 E-value=71 Score=29.64 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=39.3
Q ss_pred CCCEEEEECCCCChHHHHHHhh-cCCEEEE---EeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 018194 122 AGDRILDVGCGVGGPMRAIAAH-SRANVVG---ITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP 185 (359)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g---~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 185 (359)
++..++|+|||-|.++++++.. ....++. +|-....+..-+....+. +..+.-+..|+.++.
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~--~~vi~R~riDI~dLk 247 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKN--SLVIKRIRIDIEDLK 247 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccC--cchhheeEeeHHhcC
Confidence 3478999999999999999874 2334444 776665555444433322 133555666776653
No 499
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=68.76 E-value=90 Score=28.16 Aligned_cols=91 Identities=14% Similarity=0.262 Sum_probs=58.1
Q ss_pred CCEEEEECC--CCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--CCCC-C-CCCCCccceEE
Q 018194 123 GDRILDVGC--GVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG--NFLK-M-PFEDNHFDGAY 195 (359)
Q Consensus 123 ~~~vLDiGc--G~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~fD~v~ 195 (359)
+.+|+=.|+ +.|..+..+++..| .+|++++.+++..+.+++ .+.. .++.. +... + ....+.+|+++
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~~~~~~d~vl 222 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKE----LGAD---HVINHHQDLAEQLEALGIEPVDYIF 222 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHh----cCCc---EEEeCCccHHHHHHhhCCCCCCEEE
Confidence 889998885 34667777888778 899999999888777643 2321 11111 1100 0 11224578776
Q ss_pred ecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194 196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226 (359)
Q Consensus 196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 226 (359)
.... . ...+..+.+.|+++|.++..
T Consensus 223 ~~~~-----~-~~~~~~~~~~l~~~g~~v~~ 247 (336)
T cd08252 223 CLTD-----T-DQHWDAMAELIAPQGHICLI 247 (336)
T ss_pred EccC-----c-HHHHHHHHHHhcCCCEEEEe
Confidence 5321 1 34678889999999999864
No 500
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=68.70 E-value=28 Score=31.32 Aligned_cols=95 Identities=24% Similarity=0.278 Sum_probs=57.4
Q ss_pred CCCCCC-EEEEECC-C-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-CC-CC-CCCCCccc
Q 018194 119 DVKAGD-RILDVGC-G-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN-FL-KM-PFEDNHFD 192 (359)
Q Consensus 119 ~~~~~~-~vLDiGc-G-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d-~~-~~-~~~~~~fD 192 (359)
.+.++. +||=.|+ | .|..+..+++..|++++.++-+++..+.+++ .+.. .+...+ .. .. ....+.+|
T Consensus 141 ~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~d 213 (323)
T TIGR02823 141 GLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKE----LGAS---EVIDREDLSPPGKPLEKERWA 213 (323)
T ss_pred CCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh----cCCc---EEEccccHHHHHHHhcCCCce
Confidence 366787 9999987 2 4667777777778899888877776655533 2321 111111 00 00 01123478
Q ss_pred eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194 193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227 (359)
Q Consensus 193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 227 (359)
+++-... ...+..+.+.|+++|+++...
T Consensus 214 ~vld~~g-------~~~~~~~~~~l~~~G~~v~~g 241 (323)
T TIGR02823 214 GAVDTVG-------GHTLANVLAQLKYGGAVAACG 241 (323)
T ss_pred EEEECcc-------HHHHHHHHHHhCCCCEEEEEc
Confidence 7765422 124677889999999998753
Done!