BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018197
(359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q56XX3|Y2215_ARATH Uncharacterized protein At2g02148 OS=Arabidopsis thaliana
GN=At2g02148 PE=2 SV=1
Length = 432
Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/364 (66%), Positives = 278/364 (76%), Gaps = 36/364 (9%)
Query: 6 DVSPIESARARFLQIIVDHFINDHVIEVTDSGAEYS-QQPGQDKLSK--RKNRDVQYEGD 62
DVSPIE+AR RFLQII+D+FI+ HVIEV +S ++ G+D SK RK+ D +YEGD
Sbjct: 95 DVSPIEAARGRFLQIILDYFISQHVIEVCESKRDHDVDSGGRDSNSKVKRKSDDTRYEGD 154
Query: 63 PRFALPLMYVANMYETLVNDVNLRLASFNGIREKTIGVALEAAGGLYRSLAKKFPKKGSC 122
P FALPLMY+AN+YETLV + N+RLAS NGIR+KTIGVALEAAGGLYR L KKFPKKG+C
Sbjct: 155 PSFALPLMYIANLYETLVGEANVRLASLNGIRDKTIGVALEAAGGLYRKLTKKFPKKGTC 214
Query: 123 TYKRRELATSLETRTRFPELVIQEEKRVRFVVVNGLDIVEKPNNMPIEDAEWFKRLTGRN 182
Y+RRELATS+ETRTRFPELVI EEKRVRFVVVNGLDIVEKP+++PIE+AEWFKRLTGRN
Sbjct: 215 MYRRRELATSVETRTRFPELVIHEEKRVRFVVVNGLDIVEKPSDLPIEEAEWFKRLTGRN 274
Query: 183 EVAISAQDYKFYSPRHKYRRVASNSVSNIPVLPGFPGTDNSSTMVTAQGFHTISEPQNQQ 242
EVAISA+DYKFY PR K+RR+ NSVS+I LP FPG D SST+ QGF E Q+QQ
Sbjct: 275 EVAISARDYKFYCPRRKHRRL-QNSVSSINGLPTFPGID-SSTLANTQGFR---EDQSQQ 329
Query: 243 Q---TPSKHHMQPLSHQPQFH---HIHNNHHQQIHQGQQHPAHF-SQNHRCGPPPHLPDI 295
Q +PSKHHM LSH QFH H + HHQ I+Q Q H+ SQNH+C P++
Sbjct: 330 QHTPSPSKHHMSSLSH--QFHQSIHQSHQHHQSIYQSQHAATHYPSQNHQCD-----PEL 382
Query: 296 AHAHQSPTISQHMACLQPLTGGHVGERLHVMPASPAKFCDECGAPYLRETSKFCSECGVK 355
+H MACLQPLTGG HVMP SPAKFCD+CGA YLRETSKFCSECG K
Sbjct: 383 SHT--------QMACLQPLTGG------HVMPNSPAKFCDQCGAQYLRETSKFCSECGSK 428
Query: 356 RLGI 359
RLGI
Sbjct: 429 RLGI 432
>sp|Q5PPV5|ZC21A_XENLA Zinc finger C2HC domain-containing protein 1A OS=Xenopus laevis
GN=zc2hc1a PE=2 SV=1
Length = 323
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 312 QPLTGGHVGERLHVMPASPAKFCDECGAPYLRETSKFCSECGVKRL 357
+PL GH+ + M KFC ECG Y E +KFC ECGV+R+
Sbjct: 276 KPLNDGHIRAADNNMSGQLTKFCHECGTKYPVEWAKFCCECGVRRM 321
>sp|Q96GY0|ZC21A_HUMAN Zinc finger C2HC domain-containing protein 1A OS=Homo sapiens
GN=ZC2HC1A PE=1 SV=2
Length = 325
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 310 CLQPLTGGHVGERLHVMPASPAKFCDECGAPYLRETSKFCSECGVKRL 357
C L GG++ P + KFC ECG Y E +KFC ECG++R+
Sbjct: 276 CASSLNGGNIKGIEGHSPGNLPKFCHECGTKYPVEWAKFCCECGIRRM 323
>sp|Q5REC0|ZC21A_PONAB Zinc finger C2HC domain-containing protein 1A OS=Pongo abelii
GN=ZC2HC1A PE=2 SV=1
Length = 324
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 314 LTGGHVGERLHVMPASPAKFCDECGAPYLRETSKFCSECGVKRL 357
L GG++ P + +KFC ECG Y E +KFC ECG++R+
Sbjct: 279 LNGGNIKGIEGNSPGNLSKFCHECGTKYPVEWAKFCCECGIRRM 322
>sp|Q7SXT7|ZC21A_DANRE Zinc finger C2HC domain-containing protein 1A OS=Danio rerio
GN=zc2hc1a PE=2 SV=1
Length = 327
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 332 KFCDECGAPYLRETSKFCSECGVKRLGI 359
KFC ECG Y E++KFC ECGVKR+ I
Sbjct: 300 KFCHECGTKYPVESAKFCCECGVKRMYI 327
>sp|A4FUE7|ZC21A_BOVIN Zinc finger C2HC domain-containing protein 1A OS=Bos taurus
GN=ZC2HC1A PE=2 SV=1
Length = 323
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 332 KFCDECGAPYLRETSKFCSECGVKRL 357
KFC ECG Y E +KFC ECGV+R+
Sbjct: 296 KFCHECGTKYPVEWAKFCCECGVRRM 321
>sp|Q8BJH1|ZC21A_MOUSE Zinc finger C2HC domain-containing protein 1A OS=Mus musculus
GN=Zc2hc1a PE=2 SV=1
Length = 324
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 332 KFCDECGAPYLRETSKFCSECGVKRL 357
KFC ECG Y E +KFC ECG++R+
Sbjct: 297 KFCHECGTKYPVEWAKFCCECGIRRM 322
>sp|Q27J49|BNP_LACMU Bradykinin-potentiating and C-type natriuretic peptides OS=Lachesis
muta muta PE=1 SV=1
Length = 239
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 16/116 (13%)
Query: 240 NQQQTPSKHHMQPLSHQ--PQFHHIHNNHHQQIHQGQQHPAHFSQN---HRCGPPPHLPD 294
+Q+ P HH+ P+ Q P HHI QQ Q + P H + PPP P
Sbjct: 49 SQKPWPPGHHIPPVVVQEWPPGHHIPPLVVQQWSQKKWPPGHHIPPLVVQKWDPPPISPP 108
Query: 295 IAHAHQSP-----------TISQHMACLQPLTGGHVGERLHVMPASPAKFCDECGA 339
+ H+SP ++ A P G VG R PA+P + GA
Sbjct: 109 LLKPHESPAGGTTALREELSLGPEAALDTPPAGPDVGPRGSKAPAAPHRLPKSKGA 164
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 70/180 (38%), Gaps = 29/180 (16%)
Query: 140 PELVIQEE--KRVRFVVVNGLDIVEKPNNMPIEDAEWFKRLTGRNEVAISAQDYKFYSPR 197
PE + EE +RV+ + V L I + AE+ K G E +DY F
Sbjct: 223 PEKEVDEETMQRVKVLYVRNLMISTTEETI---KAEFSKFKPGAVERVKKLRDYAFVHFF 279
Query: 198 HKYRRVASNSVSNIPVLPGFPGTDNSSTMVTAQGFHTISEPQNQQQTPSKHHMQPLSHQP 257
H+ VA+ SV N + D +S VT +++P N++ T +H +S
Sbjct: 280 HREDAVAAMSVMNGKCI------DGASIEVT------LAKPVNKENTWRQHLNGQISPNS 327
Query: 258 QFHHIHNNHHQQIHQGQQHPAHFSQNHRCGPPPHLPDIAHAHQSPTISQHMACLQPLTGG 317
+ ++ N + S + G PP LP + SP+ + C P G
Sbjct: 328 ENLLVYANKEE------------SHSKSLGKPPTLPTRLNGQHSPSPPEIERCTYPFFPG 375
>sp|P25344|STE50_YEAST Protein STE50 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=STE50 PE=1 SV=1
Length = 346
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 209 SNIPVLPGFPGTDNSSTMVTAQGFHTISEPQN--QQQTPSKHHMQP-LSHQPQFHHIHNN 265
SN ++P G S T F T+ Q+ ++++P QP LSH H N
Sbjct: 169 SNNTIIPSSDGVSLSQT----DYFDTVHNRQSPSRRESPVTVFRQPSLSHSKSLHKDSKN 224
Query: 266 HHQQIHQGQQHPAHFSQNHRCGPPPH 291
QI Q HP+ S + GP P+
Sbjct: 225 KVPQISTNQSHPSAVSTANTPGPSPN 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,473,414
Number of Sequences: 539616
Number of extensions: 6181291
Number of successful extensions: 24501
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 20822
Number of HSP's gapped (non-prelim): 2131
length of query: 359
length of database: 191,569,459
effective HSP length: 119
effective length of query: 240
effective length of database: 127,355,155
effective search space: 30565237200
effective search space used: 30565237200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)