Query 018197
Match_columns 359
No_of_seqs 121 out of 208
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 11:27:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1twf_L ABC10-alpha, DNA-direct 96.0 0.0034 1.2E-07 48.5 2.8 29 329-357 25-56 (70)
2 3j20_Y 30S ribosomal protein S 93.2 0.02 6.8E-07 41.5 0.5 26 330-355 18-46 (50)
3 2jrp_A Putative cytoplasmic pr 93.1 0.013 4.4E-07 46.8 -0.6 22 333-354 33-59 (81)
4 2lcq_A Putative toxin VAPC6; P 93.0 0.023 7.7E-07 47.6 0.6 25 332-356 133-158 (165)
5 1vk6_A NADH pyrophosphatase; 1 91.9 0.047 1.6E-06 49.6 1.3 27 329-355 105-134 (269)
6 2jrp_A Putative cytoplasmic pr 91.4 0.042 1.4E-06 43.9 0.4 24 332-357 19-42 (81)
7 3h0g_L DNA-directed RNA polyme 91.1 0.16 5.6E-06 38.8 3.3 28 330-357 19-49 (63)
8 3qt1_I DNA-directed RNA polyme 90.5 0.13 4.5E-06 43.4 2.6 28 329-356 22-56 (133)
9 3j21_g 50S ribosomal protein L 86.1 0.35 1.2E-05 35.6 2.1 25 331-356 14-38 (51)
10 2kdx_A HYPA, hydrogenase/ureas 85.6 0.25 8.4E-06 39.9 1.1 28 329-356 71-100 (119)
11 2k4x_A 30S ribosomal protein S 84.8 0.28 9.5E-06 36.1 1.0 26 330-355 17-45 (55)
12 3irb_A Uncharacterized protein 80.8 0.38 1.3E-05 40.4 0.5 23 332-355 48-70 (145)
13 2con_A RUH-035 protein, NIN on 79.5 0.84 2.9E-05 36.1 2.0 24 333-356 17-40 (79)
14 2apo_B Ribosome biogenesis pro 77.2 0.83 2.9E-05 34.6 1.3 23 331-356 6-28 (60)
15 4esj_A Type-2 restriction enzy 76.4 0.86 2.9E-05 43.0 1.4 24 332-355 35-65 (257)
16 2jne_A Hypothetical protein YF 75.3 0.76 2.6E-05 38.3 0.7 21 334-356 51-71 (101)
17 3m7n_A Putative uncharacterize 74.9 1 3.5E-05 38.7 1.4 25 331-355 140-165 (179)
18 2kn9_A Rubredoxin; metalloprot 74.2 2 6.9E-05 34.1 2.9 45 306-356 7-70 (81)
19 2aus_D NOP10, ribosome biogene 74.1 1 3.6E-05 34.2 1.1 23 331-356 5-27 (60)
20 1ee8_A MUTM (FPG) protein; bet 73.2 1.1 3.9E-05 40.9 1.4 24 331-354 235-263 (266)
21 1k3x_A Endonuclease VIII; hydr 73.2 0.94 3.2E-05 41.2 0.8 23 331-353 234-261 (262)
22 2gnr_A Conserved hypothetical 72.3 0.9 3.1E-05 38.4 0.5 23 332-355 48-70 (145)
23 2zjr_Z 50S ribosomal protein L 71.9 1.3 4.4E-05 33.2 1.2 26 328-355 27-52 (60)
24 1pft_A TFIIB, PFTFIIBN; N-term 71.9 0.89 3E-05 31.6 0.3 25 332-356 6-34 (50)
25 1k82_A Formamidopyrimidine-DNA 71.8 1.1 3.6E-05 41.0 0.8 23 331-353 240-267 (268)
26 3v2d_5 50S ribosomal protein L 71.7 1.3 4.6E-05 33.1 1.2 24 329-354 28-51 (60)
27 3u6p_A Formamidopyrimidine-DNA 71.3 1.2 4.2E-05 40.8 1.1 23 331-353 245-272 (273)
28 2xzf_A Formamidopyrimidine-DNA 70.4 1.3 4.6E-05 40.3 1.2 25 331-355 242-271 (271)
29 1lv3_A Hypothetical protein YA 70.2 1.2 4.2E-05 34.5 0.7 26 326-351 4-33 (68)
30 1dl6_A Transcription factor II 69.1 1.7 5.9E-05 31.8 1.3 25 332-356 12-40 (58)
31 3pwf_A Rubrerythrin; non heme 68.4 1.8 6E-05 37.4 1.4 23 334-356 141-163 (170)
32 2kgo_A Uncharacterized protein 66.0 1.7 6E-05 36.0 0.9 25 331-355 56-86 (108)
33 1tjl_A DNAK suppressor protein 65.9 1.7 5.9E-05 37.2 0.9 23 332-354 112-140 (151)
34 2kq9_A DNAK suppressor protein 62.6 1.2 4E-05 36.1 -0.8 24 331-354 81-110 (112)
35 2akl_A PHNA-like protein PA012 61.5 2.4 8.2E-05 37.0 0.9 24 332-355 28-53 (138)
36 2ee8_A Protein ODD-skipped-rel 59.6 13 0.00044 26.7 4.4 8 334-341 20-27 (106)
37 1yuz_A Nigerythrin; rubrythrin 58.6 3.4 0.00012 36.4 1.4 24 333-356 173-196 (202)
38 3a43_A HYPD, hydrogenase nicke 58.5 1.4 4.7E-05 37.0 -1.1 28 329-356 68-117 (139)
39 1vq8_Z 50S ribosomal protein L 56.2 1.7 5.7E-05 34.4 -0.9 25 333-357 29-56 (83)
40 2ct7_A Ring finger protein 31; 55.9 5.8 0.0002 30.3 2.1 15 327-341 21-35 (86)
41 2cot_A Zinc finger protein 435 51.3 17 0.0006 24.8 3.9 24 332-355 19-55 (77)
42 3na7_A HP0958; flagellar bioge 51.2 5.6 0.00019 35.5 1.6 22 333-354 200-230 (256)
43 1e8j_A Rubredoxin; iron-sulfur 50.0 11 0.00036 27.4 2.6 9 348-356 38-46 (52)
44 2epq_A POZ-, at HOOK-, and zin 50.0 5.6 0.00019 24.7 1.0 21 333-353 12-45 (45)
45 1gh9_A 8.3 kDa protein (gene M 49.2 2.4 8.4E-05 32.7 -0.9 21 334-356 7-30 (71)
46 1lko_A Rubrerythrin all-iron(I 48.0 3.8 0.00013 35.5 -0.0 32 106-137 24-55 (191)
47 2gai_A DNA topoisomerase I; zi 46.2 2.9 0.0001 42.5 -1.1 26 78-111 249-275 (633)
48 2pzi_A Probable serine/threoni 45.5 6.7 0.00023 38.3 1.3 27 330-356 33-66 (681)
49 3ga8_A HTH-type transcriptiona 45.2 2.6 8.9E-05 31.6 -1.3 11 346-356 36-46 (78)
50 3jyw_9 60S ribosomal protein L 44.6 16 0.00053 28.6 3.0 27 332-358 27-56 (72)
51 1weo_A Cellulose synthase, cat 44.5 8.8 0.0003 31.6 1.6 23 334-356 38-68 (93)
52 2lce_A B-cell lymphoma 6 prote 43.3 16 0.00053 24.9 2.5 24 332-355 18-54 (74)
53 3u50_C Telomerase-associated p 42.0 5.1 0.00017 35.1 -0.1 22 334-355 45-68 (172)
54 2lk0_A RNA-binding protein 5; 41.6 9.4 0.00032 25.0 1.1 29 328-357 2-30 (32)
55 3w0f_A Endonuclease 8-like 3; 39.8 9.6 0.00033 35.9 1.3 23 333-355 253-282 (287)
56 6rxn_A Rubredoxin; electron tr 39.5 6.1 0.00021 28.3 -0.0 23 334-356 7-40 (46)
57 2lv2_A Insulinoma-associated p 39.2 18 0.00061 27.2 2.5 26 331-356 28-66 (85)
58 2pk7_A Uncharacterized protein 38.9 8.8 0.0003 29.3 0.7 23 333-355 10-35 (69)
59 2hf1_A Tetraacyldisaccharide-1 38.5 8.9 0.0003 29.2 0.7 23 333-355 10-35 (68)
60 1gnf_A Transcription factor GA 38.2 16 0.00054 26.1 2.0 25 330-354 3-33 (46)
61 2jr6_A UPF0434 protein NMA0874 38.2 9.3 0.00032 29.0 0.8 24 332-355 9-35 (68)
62 3u5c_b RP61, YS20, 40S ribosom 37.7 22 0.00075 28.6 2.9 31 326-356 25-63 (82)
63 3j20_W 30S ribosomal protein S 37.4 13 0.00044 28.6 1.4 31 326-356 6-44 (63)
64 2js4_A UPF0434 protein BB2007; 36.4 8.1 0.00028 29.5 0.2 23 333-355 10-35 (70)
65 2l4z_A DNA endonuclease RBBP8, 36.2 92 0.0031 24.8 6.4 27 330-356 60-98 (123)
66 1x62_A C-terminal LIM domain p 36.0 32 0.0011 24.8 3.4 13 329-341 13-25 (79)
67 2eps_A POZ-, at HOOK-, and zin 34.0 29 0.001 22.5 2.7 24 333-356 14-51 (54)
68 4ayb_P DNA-directed RNA polyme 33.9 26 0.0009 25.8 2.6 23 334-356 6-33 (48)
69 1bbo_A Human enhancer-binding 33.1 22 0.00075 22.6 1.9 22 334-355 4-38 (57)
70 2hbp_A Cytoskeleton assembly c 32.7 35 0.0012 26.6 3.2 34 147-180 26-59 (68)
71 2jny_A Uncharacterized BCR; st 32.5 13 0.00043 28.3 0.7 24 332-355 11-37 (67)
72 1h7b_A Anaerobic ribonucleotid 32.2 10 0.00034 38.8 0.1 26 329-354 538-566 (605)
73 2qkd_A Zinc finger protein ZPR 32.0 8.3 0.00028 37.9 -0.5 24 333-356 222-259 (404)
74 3uk3_C Zinc finger protein 217 31.5 19 0.00065 22.9 1.4 23 333-355 6-41 (57)
75 3axs_A Probable N(2),N(2)-dime 31.3 15 0.00051 35.2 1.2 25 332-356 245-273 (392)
76 1vk6_A NADH pyrophosphatase; 1 31.0 13 0.00045 33.6 0.7 12 345-356 106-117 (269)
77 2gmg_A Hypothetical protein PF 30.8 23 0.00078 29.4 2.0 26 331-356 67-94 (105)
78 1yfu_A 3-hydroxyanthranilate-3 30.8 6.2 0.00021 35.2 -1.5 24 332-355 123-168 (174)
79 3f2b_A DNA-directed DNA polyme 30.7 20 0.0007 39.0 2.2 32 325-356 496-537 (1041)
80 3d00_A Tungsten formylmethanof 30.4 6.8 0.00023 34.5 -1.3 26 330-355 162-187 (191)
81 2adr_A ADR1; transcription reg 30.2 21 0.0007 23.1 1.4 23 333-355 4-39 (60)
82 2kao_A Methionine-R-sulfoxide 29.4 24 0.00081 30.1 2.0 27 329-355 17-44 (124)
83 2l8e_A Polyhomeotic-like prote 29.4 14 0.00047 26.8 0.4 21 330-350 17-41 (49)
84 3h0g_I DNA-directed RNA polyme 29.3 39 0.0013 27.1 3.2 29 326-355 68-109 (113)
85 2k1p_A Zinc finger RAN-binding 28.9 59 0.002 21.3 3.4 28 329-357 4-31 (33)
86 3iz5_m 60S ribosomal protein L 28.5 14 0.00049 30.0 0.4 26 332-357 37-65 (92)
87 1zvf_A 3-hydroxyanthranilate 3 28.4 7.2 0.00025 34.9 -1.5 24 332-355 125-170 (176)
88 1vd4_A Transcription initiatio 28.3 19 0.00064 24.4 0.9 23 334-356 17-49 (62)
89 2dj7_A Actin-binding LIM prote 28.1 79 0.0027 23.1 4.4 14 329-342 13-26 (80)
90 1wd2_A Ariadne-1 protein homol 28.1 39 0.0013 24.7 2.7 12 330-341 5-16 (60)
91 3twl_A Formamidopyrimidine-DNA 27.9 15 0.00052 34.3 0.6 25 331-355 247-278 (310)
92 3izc_m 60S ribosomal protein R 27.8 15 0.00052 29.9 0.5 26 332-357 37-65 (92)
93 2g9p_A Antimicrobial peptide l 27.7 15 0.00053 23.9 0.4 14 107-120 1-14 (26)
94 3iz6_X 40S ribosomal protein S 27.6 24 0.00083 28.5 1.6 30 327-356 28-65 (86)
95 2zkr_2 60S ribosomal protein L 27.4 27 0.00091 28.8 1.8 25 331-355 16-40 (97)
96 3mkr_B Coatomer subunit alpha; 26.9 27 0.00092 33.5 2.1 30 329-358 276-306 (320)
97 2xzm_6 RPS27E; ribosome, trans 26.5 24 0.00083 28.2 1.4 31 326-356 23-61 (81)
98 3j21_i 50S ribosomal protein L 26.3 15 0.0005 29.4 0.1 26 332-357 36-64 (83)
99 3na7_A HP0958; flagellar bioge 25.4 21 0.00073 31.8 1.0 30 313-342 195-233 (256)
100 1wjp_A Zinc finger protein 295 25.3 32 0.0011 24.9 1.8 23 333-355 18-51 (107)
101 1x0t_A Ribonuclease P protein 25.0 46 0.0016 27.2 2.8 31 325-355 59-103 (120)
102 1s24_A Rubredoxin 2; electron 24.9 19 0.00065 28.9 0.5 25 332-356 35-78 (87)
103 3fac_A Putative uncharacterize 24.8 14 0.00048 29.0 -0.3 10 347-356 68-77 (118)
104 2co8_A NEDD9 interacting prote 24.2 99 0.0034 22.5 4.3 8 334-341 45-52 (82)
105 2epr_A POZ-, at HOOK-, and zin 24.0 33 0.0011 21.5 1.5 22 333-354 14-48 (48)
106 1x4u_A Zinc finger, FYVE domai 23.9 69 0.0024 24.2 3.5 35 321-355 4-47 (84)
107 3mv2_A Coatomer subunit alpha; 23.0 26 0.00088 33.8 1.1 31 328-358 284-315 (325)
108 4gzn_C ZFP-57, zinc finger pro 22.9 22 0.00075 25.1 0.5 22 334-355 7-41 (60)
109 1l1o_C Replication protein A 7 22.7 20 0.00068 30.6 0.3 22 334-355 46-71 (181)
110 2k2d_A Ring finger and CHY zin 22.7 16 0.00054 28.4 -0.3 24 332-355 38-64 (79)
111 3cc2_Z 50S ribosomal protein L 22.2 12 0.00042 31.6 -1.1 26 332-357 61-89 (116)
112 2fnf_X Putative RAS effector N 22.0 43 0.0015 25.0 2.0 26 329-355 33-58 (72)
113 2k3r_A Ribonuclease P protein 21.9 54 0.0019 27.0 2.7 31 325-355 54-98 (123)
114 2l1u_A MSRB2, methionine-R-sul 21.8 15 0.0005 32.0 -0.7 23 333-355 39-61 (143)
115 2ayj_A 50S ribosomal protein L 21.8 25 0.00087 26.5 0.7 25 330-355 18-42 (56)
116 3bbo_3 Ribosomal protein L33; 21.6 54 0.0018 25.0 2.5 10 346-355 49-58 (66)
117 2dj8_A Protein CBFA2T1; zinc f 21.6 80 0.0027 22.4 3.3 22 329-354 13-34 (60)
118 2ecv_A Tripartite motif-contai 21.6 1.1E+02 0.0039 21.1 4.1 11 346-356 59-69 (85)
119 3hs2_A PHD protein, prevent HO 21.4 37 0.0013 23.9 1.4 52 131-185 5-57 (58)
120 2kae_A GATA-type transcription 21.4 40 0.0014 26.0 1.7 27 328-354 5-38 (71)
121 3dfx_A Trans-acting T-cell-spe 21.1 45 0.0015 25.2 1.9 27 329-355 5-37 (63)
122 1x6m_A GFA, glutathione-depend 21.1 18 0.00063 31.2 -0.3 10 347-356 99-108 (196)
123 3po3_S Transcription elongatio 21.0 50 0.0017 28.7 2.5 11 331-341 137-147 (178)
124 3p8b_A DNA-directed RNA polyme 20.9 23 0.00079 28.3 0.3 22 331-355 23-44 (81)
125 1y02_A CARP2, FYVE-ring finger 20.9 40 0.0014 27.9 1.8 31 325-355 13-52 (120)
126 3r8s_0 50S ribosomal protein L 20.6 29 0.001 25.4 0.8 22 330-354 26-47 (56)
127 1faf_A Large T antigen; J doma 20.4 35 0.0012 25.5 1.2 28 107-134 32-60 (79)
128 3sgi_A DNA ligase; HET: DNA AM 20.3 27 0.00094 36.0 0.8 27 330-356 414-447 (615)
129 3gmt_A Adenylate kinase; ssgci 20.0 28 0.00096 31.2 0.7 8 348-355 153-160 (230)
No 1
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=96.03 E-value=0.0034 Score=48.47 Aligned_cols=29 Identities=31% Similarity=0.792 Sum_probs=22.6
Q ss_pred CCCCC-CCcCCCC--CCCCCCCCCcccCCcCc
Q 018197 329 SPAKF-CDECGAP--YLRETSKFCSECGVKRL 357 (359)
Q Consensus 329 ~~sKF-CpeCGt~--l~~~~AKFCpECGtKr~ 357 (359)
....+ |++||.. +....+-+|++||.+++
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 34455 9999999 45566889999999765
No 2
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=93.18 E-value=0.02 Score=41.48 Aligned_cols=26 Identities=31% Similarity=0.721 Sum_probs=19.7
Q ss_pred CCCCCCcCCCCC---CCCCCCCCcccCCc
Q 018197 330 PAKFCDECGAPY---LRETSKFCSECGVK 355 (359)
Q Consensus 330 ~sKFCpeCGt~l---~~~~AKFCpECGtK 355 (359)
.-+|||+||+.+ .......|+.||..
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCE
Confidence 378999999965 23357789999953
No 3
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=93.13 E-value=0.013 Score=46.79 Aligned_cols=22 Identities=23% Similarity=0.623 Sum_probs=11.9
Q ss_pred CCCcCCCCCCC-----CCCCCCcccCC
Q 018197 333 FCDECGAPYLR-----ETSKFCSECGV 354 (359)
Q Consensus 333 FCpeCGt~l~~-----~~AKFCpECGt 354 (359)
|||+||.++-. ...+||++||.
T Consensus 33 fCPeCgq~Le~lkACGA~~yFC~~C~~ 59 (81)
T 2jrp_A 33 LCPDCRQPLQVLKACGAVDYFCQNGHG 59 (81)
T ss_dssp ECSSSCSCCCEEEETTEEEECCTTTTC
T ss_pred cCcchhhHHHHHHhcCCcCeeeccCCC
Confidence 66666666610 12566666664
No 4
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=92.95 E-value=0.023 Score=47.55 Aligned_cols=25 Identities=28% Similarity=0.723 Sum_probs=18.8
Q ss_pred CCCCcCCCCCCCCC-CCCCcccCCcC
Q 018197 332 KFCDECGAPYLRET-SKFCSECGVKR 356 (359)
Q Consensus 332 KFCpeCGt~l~~~~-AKFCpECGtKr 356 (359)
.-|..||..+.... ..|||+||.++
T Consensus 133 y~C~~Cg~~~~~~~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 133 YVCIGCGRKFSTLPPGGVCPDCGSKV 158 (165)
T ss_dssp EEESSSCCEESSCCGGGBCTTTCCBE
T ss_pred EECCCCCCcccCCCCCCcCCCCCCcc
Confidence 34999999885332 45999999874
No 5
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=91.89 E-value=0.047 Score=49.55 Aligned_cols=27 Identities=30% Similarity=0.717 Sum_probs=22.4
Q ss_pred CCCCCCCcCCCCC---CCCCCCCCcccCCc
Q 018197 329 SPAKFCDECGAPY---LRETSKFCSECGVK 355 (359)
Q Consensus 329 ~~sKFCpeCGt~l---~~~~AKFCpECGtK 355 (359)
...+||+.||+++ ...+.+.|+.||..
T Consensus 105 ~~~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 105 RSHKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp HTTSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred hcCCccccCCCcCccCCCceeeeCCCCCCE
Confidence 4679999999998 34578999999974
No 6
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=91.39 E-value=0.042 Score=43.88 Aligned_cols=24 Identities=17% Similarity=0.685 Sum_probs=19.5
Q ss_pred CCCCcCCCCCCCCCCCCCcccCCcCc
Q 018197 332 KFCDECGAPYLRETSKFCSECGVKRL 357 (359)
Q Consensus 332 KFCpeCGt~l~~~~AKFCpECGtKr~ 357 (359)
..|..||..+... | |||+||+++.
T Consensus 19 ~~C~~C~~~~~~~-a-fCPeCgq~Le 42 (81)
T 2jrp_A 19 AHCETCAKDFSLQ-A-LCPDCRQPLQ 42 (81)
T ss_dssp EECTTTCCEEEEE-E-ECSSSCSCCC
T ss_pred eECccccccCCCc-c-cCcchhhHHH
Confidence 3499999988754 6 9999999873
No 7
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=91.10 E-value=0.16 Score=38.78 Aligned_cols=28 Identities=29% Similarity=0.716 Sum_probs=21.8
Q ss_pred CCCC-CCcCCCCCCC--CCCCCCcccCCcCc
Q 018197 330 PAKF-CDECGAPYLR--ETSKFCSECGVKRL 357 (359)
Q Consensus 330 ~sKF-CpeCGt~l~~--~~AKFCpECGtKr~ 357 (359)
...+ |.+||+.... ...--|++||.+++
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHRVM 49 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCCCC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcEEE
Confidence 4566 9999999732 24788999999875
No 8
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=90.50 E-value=0.13 Score=43.44 Aligned_cols=28 Identities=18% Similarity=0.511 Sum_probs=21.4
Q ss_pred CCCCCCCcCCCCCCCCC-------CCCCcccCCcC
Q 018197 329 SPAKFCDECGAPYLRET-------SKFCSECGVKR 356 (359)
Q Consensus 329 ~~sKFCpeCGt~l~~~~-------AKFCpECGtKr 356 (359)
.+.+|||+||.-|.+.. .-.|+.||...
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 34799999999985442 36899999753
No 9
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.11 E-value=0.35 Score=35.59 Aligned_cols=25 Identities=40% Similarity=0.739 Sum_probs=20.9
Q ss_pred CCCCCcCCCCCCCCCCCCCcccCCcC
Q 018197 331 AKFCDECGAPYLRETSKFCSECGVKR 356 (359)
Q Consensus 331 sKFCpeCGt~l~~~~AKFCpECGtKr 356 (359)
.+.|+.||+.++ .++..|..||.+.
T Consensus 14 k~iCpkC~a~~~-~gaw~CrKCG~~~ 38 (51)
T 3j21_g 14 KYVCLRCGATNP-WGAKKCRKCGYKR 38 (51)
T ss_dssp EEECTTTCCEEC-TTCSSCSSSSSCC
T ss_pred CccCCCCCCcCC-CCceecCCCCCcc
Confidence 456999999955 5799999999884
No 10
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=85.56 E-value=0.25 Score=39.87 Aligned_cols=28 Identities=18% Similarity=0.493 Sum_probs=20.4
Q ss_pred CCCCCCCcCCCCCCCCCC-C-CCcccCCcC
Q 018197 329 SPAKFCDECGAPYLRETS-K-FCSECGVKR 356 (359)
Q Consensus 329 ~~sKFCpeCGt~l~~~~A-K-FCpECGtKr 356 (359)
+....|.+||..+..... . -||.||...
T Consensus 71 p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp CCEEECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred cceEEcCCCCCEEeCCCCCCCcCccccCCC
Confidence 445669999998744333 4 599999884
No 11
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=84.80 E-value=0.28 Score=36.05 Aligned_cols=26 Identities=27% Similarity=0.796 Sum_probs=19.1
Q ss_pred CCCCCCcCCCCCC---CCCCCCCcccCCc
Q 018197 330 PAKFCDECGAPYL---RETSKFCSECGVK 355 (359)
Q Consensus 330 ~sKFCpeCGt~l~---~~~AKFCpECGtK 355 (359)
..+|||.||.-+. ..+.-.|..||..
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCCE
Confidence 3799999999653 1235589999964
No 12
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=80.75 E-value=0.38 Score=40.40 Aligned_cols=23 Identities=30% Similarity=0.882 Sum_probs=19.4
Q ss_pred CCCCcCCCCCCCCCCCCCcccCCc
Q 018197 332 KFCDECGAPYLRETSKFCSECGVK 355 (359)
Q Consensus 332 KFCpeCGt~l~~~~AKFCpECGtK 355 (359)
.-|..||+.+.++ ..+||.||..
T Consensus 48 ~rC~~CG~~~~PP-r~~Cp~C~s~ 70 (145)
T 3irb_A 48 SKCSKCGRIFVPA-RSYCEHCFVK 70 (145)
T ss_dssp EECTTTCCEEESC-CSEETTTTEE
T ss_pred EEeCCCCcEEcCc-hhhCcCCCCC
Confidence 3599999998766 7899999975
No 13
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=79.45 E-value=0.84 Score=36.11 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=17.5
Q ss_pred CCCcCCCCCCCCCCCCCcccCCcC
Q 018197 333 FCDECGAPYLRETSKFCSECGVKR 356 (359)
Q Consensus 333 FCpeCGt~l~~~~AKFCpECGtKr 356 (359)
.|..|=+-...-.-.|||.||.+-
T Consensus 17 rC~aCf~~t~~~~k~FCp~CGn~T 40 (79)
T 2con_A 17 RCHGCFKTTSDMNRVFCGHCGNKT 40 (79)
T ss_dssp ECSSSCCEESCSSCCSCSSSCCSC
T ss_pred EecccceECCCcccccccccCccc
Confidence 488886665555677888888873
No 14
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=77.22 E-value=0.83 Score=34.63 Aligned_cols=23 Identities=39% Similarity=0.894 Sum_probs=17.0
Q ss_pred CCCCCcCCCCCCCCCCCCCcccCCcC
Q 018197 331 AKFCDECGAPYLRETSKFCSECGVKR 356 (359)
Q Consensus 331 sKFCpeCGt~l~~~~AKFCpECGtKr 356 (359)
.+.|+.||.--+ .+.||.||...
T Consensus 6 mr~C~~CgvYTL---k~~CP~CG~~T 28 (60)
T 2apo_B 6 MKKCPKCGLYTL---KEICPKCGEKT 28 (60)
T ss_dssp CEECTTTCCEES---SSBCSSSCSBC
T ss_pred ceeCCCCCCEec---cccCcCCCCcC
Confidence 467888887655 66788888764
No 15
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=76.38 E-value=0.86 Score=43.01 Aligned_cols=24 Identities=25% Similarity=0.816 Sum_probs=17.4
Q ss_pred CCCCcCCCCCC-------CCCCCCCcccCCc
Q 018197 332 KFCDECGAPYL-------RETSKFCSECGVK 355 (359)
Q Consensus 332 KFCpeCGt~l~-------~~~AKFCpECGtK 355 (359)
-+||.||..-+ +..--||++|+..
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~Ee 65 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCSEE 65 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTCCE
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcchh
Confidence 48999999532 2234799999864
No 16
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=75.32 E-value=0.76 Score=38.28 Aligned_cols=21 Identities=24% Similarity=0.676 Sum_probs=12.2
Q ss_pred CCcCCCCCCCCCCCCCcccCCcC
Q 018197 334 CDECGAPYLRETSKFCSECGVKR 356 (359)
Q Consensus 334 CpeCGt~l~~~~AKFCpECGtKr 356 (359)
|..|+..+.. .-|||+||.++
T Consensus 51 C~~C~~~f~~--~a~CPdC~q~L 71 (101)
T 2jne_A 51 CRSCGEFIEM--KALCPDCHQPL 71 (101)
T ss_dssp ETTTCCEEEE--EEECTTTCSBC
T ss_pred Cccccchhhc--cccCcchhhHH
Confidence 4444444322 35788888875
No 17
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=74.90 E-value=1 Score=38.72 Aligned_cols=25 Identities=24% Similarity=0.644 Sum_probs=19.6
Q ss_pred CCCCCcCCCCCC-CCCCCCCcccCCc
Q 018197 331 AKFCDECGAPYL-RETSKFCSECGVK 355 (359)
Q Consensus 331 sKFCpeCGt~l~-~~~AKFCpECGtK 355 (359)
...|++||..|. ....--||+||..
T Consensus 140 ~a~~~~~g~~m~~~~~~~~cp~~g~~ 165 (179)
T 3m7n_A 140 RALCSNCKTEMVREGDILKCPECGRV 165 (179)
T ss_dssp ECBCTTTCCBCEECSSSEECSSSCCE
T ss_pred EecccccCCceEECCCEEECCCCCCE
Confidence 467999999993 3356679999986
No 18
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=74.21 E-value=2 Score=34.11 Aligned_cols=45 Identities=29% Similarity=0.612 Sum_probs=25.8
Q ss_pred CCccccccCCCCCcccccccCCCCCCCC-CCcCCCCCCC------------------CCCCCCcccCCcC
Q 018197 306 QHMACLQPLTGGHVGERLHVMPASPAKF-CDECGAPYLR------------------ETSKFCSECGVKR 356 (359)
Q Consensus 306 qh~~ylqP~tgG~~gG~~~i~p~~~sKF-CpeCGt~l~~------------------~~AKFCpECGtKr 356 (359)
.||+-|.-...|.. ++..+ .++ |..||.-+.+ +..--||.||...
T Consensus 7 ~~~~~~~~~~~g~~--~~~em----~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K 70 (81)
T 2kn9_A 7 HHMGTLEAQTQGPG--SMNDY----KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAK 70 (81)
T ss_dssp CCCCCCCCCCCCCC--CSSCC----CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCG
T ss_pred ccccceeecccCCc--CCCCc----ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCCH
Confidence 47888763332221 22112 345 9999988732 1123699999864
No 19
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=74.08 E-value=1 Score=34.18 Aligned_cols=23 Identities=35% Similarity=0.803 Sum_probs=17.6
Q ss_pred CCCCCcCCCCCCCCCCCCCcccCCcC
Q 018197 331 AKFCDECGAPYLRETSKFCSECGVKR 356 (359)
Q Consensus 331 sKFCpeCGt~l~~~~AKFCpECGtKr 356 (359)
.+.|+.||.--+ .+.||.||.+.
T Consensus 5 mr~C~~Cg~YTL---k~~CP~CG~~t 27 (60)
T 2aus_D 5 IRKCPKCGRYTL---KETCPVCGEKT 27 (60)
T ss_dssp CEECTTTCCEES---SSBCTTTCSBC
T ss_pred ceECCCCCCEEc---cccCcCCCCcc
Confidence 467999987655 67799999874
No 20
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=73.24 E-value=1.1 Score=40.85 Aligned_cols=24 Identities=29% Similarity=0.736 Sum_probs=18.8
Q ss_pred CCCCCcCCCCCC-----CCCCCCCcccCC
Q 018197 331 AKFCDECGAPYL-----RETSKFCSECGV 354 (359)
Q Consensus 331 sKFCpeCGt~l~-----~~~AKFCpECGt 354 (359)
.+.|+.||+++. .-+.-|||.|=+
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 678999999982 234679999964
No 21
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=73.23 E-value=0.94 Score=41.17 Aligned_cols=23 Identities=22% Similarity=0.670 Sum_probs=17.9
Q ss_pred CCCCCcCCCCCC-----CCCCCCCcccC
Q 018197 331 AKFCDECGAPYL-----RETSKFCSECG 353 (359)
Q Consensus 331 sKFCpeCGt~l~-----~~~AKFCpECG 353 (359)
.+.|+.||+++. .-+.-|||.|=
T Consensus 234 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 234 GEPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred cCCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 577999999983 22467999994
No 22
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=72.34 E-value=0.9 Score=38.44 Aligned_cols=23 Identities=30% Similarity=0.882 Sum_probs=19.0
Q ss_pred CCCCcCCCCCCCCCCCCCcccCCc
Q 018197 332 KFCDECGAPYLRETSKFCSECGVK 355 (359)
Q Consensus 332 KFCpeCGt~l~~~~AKFCpECGtK 355 (359)
.-|..||+.+.++ ..+||.||..
T Consensus 48 ~rC~~CG~~~fPP-r~~Cp~C~s~ 70 (145)
T 2gnr_A 48 SKCSKCGRIFVPA-RSYCEHCFVK 70 (145)
T ss_dssp EECTTTCCEEESC-CSEETTTTEE
T ss_pred EEECCCCcEEeCC-CCCCCCCCCC
Confidence 4599999998655 6799999975
No 23
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=71.94 E-value=1.3 Score=33.18 Aligned_cols=26 Identities=27% Similarity=0.644 Sum_probs=19.6
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCcccCCc
Q 018197 328 ASPAKFCDECGAPYLRETSKFCSECGVK 355 (359)
Q Consensus 328 ~~~sKFCpeCGt~l~~~~AKFCpECGtK 355 (359)
..+--.|++||+...+ -.-|++||.=
T Consensus 27 ~p~l~~c~~cG~~~~p--H~vc~~CG~Y 52 (60)
T 2zjr_Z 27 APNLTECPQCHGKKLS--HHICPNCGYY 52 (60)
T ss_dssp CCCCEECTTTCCEECT--TBCCTTTCBS
T ss_pred CCCceECCCCCCEeCC--ceEcCCCCcC
Confidence 3445669999999653 5789999963
No 24
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=71.89 E-value=0.89 Score=31.59 Aligned_cols=25 Identities=24% Similarity=0.704 Sum_probs=17.8
Q ss_pred CCCCcCCC-CCC---CCCCCCCcccCCcC
Q 018197 332 KFCDECGA-PYL---RETSKFCSECGVKR 356 (359)
Q Consensus 332 KFCpeCGt-~l~---~~~AKFCpECGtKr 356 (359)
..||.||. .+. ..+.-.|.+||.-.
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 45999998 652 33457899999743
No 25
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=71.76 E-value=1.1 Score=41.02 Aligned_cols=23 Identities=26% Similarity=0.925 Sum_probs=18.0
Q ss_pred CCCCCcCCCCCC-----CCCCCCCcccC
Q 018197 331 AKFCDECGAPYL-----RETSKFCSECG 353 (359)
Q Consensus 331 sKFCpeCGt~l~-----~~~AKFCpECG 353 (359)
.+.|+.||+++. .-+.-|||.|=
T Consensus 240 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 240 GEPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 678999999983 22467999994
No 26
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=71.65 E-value=1.3 Score=33.14 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=18.3
Q ss_pred CCCCCCCcCCCCCCCCCCCCCcccCC
Q 018197 329 SPAKFCDECGAPYLRETSKFCSECGV 354 (359)
Q Consensus 329 ~~sKFCpeCGt~l~~~~AKFCpECGt 354 (359)
.+--.|++||+.... -.-|+.||.
T Consensus 28 p~l~~c~~cGe~~~~--H~vc~~CG~ 51 (60)
T 3v2d_5 28 PTLVPCPECKAMKPP--HTVCPECGY 51 (60)
T ss_dssp CCCEECTTTCCEECT--TSCCTTTCE
T ss_pred CceeECCCCCCeecc--eEEcCCCCc
Confidence 345669999998764 466999995
No 27
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=71.32 E-value=1.2 Score=40.80 Aligned_cols=23 Identities=26% Similarity=0.884 Sum_probs=18.3
Q ss_pred CCCCCcCCCCCC-----CCCCCCCcccC
Q 018197 331 AKFCDECGAPYL-----RETSKFCSECG 353 (359)
Q Consensus 331 sKFCpeCGt~l~-----~~~AKFCpECG 353 (359)
.+.|+.||+++. .-+.-|||.|=
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred cCCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 678999999983 23478999994
No 28
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=70.36 E-value=1.3 Score=40.32 Aligned_cols=25 Identities=32% Similarity=0.775 Sum_probs=19.2
Q ss_pred CCCCCcCCCCCC-----CCCCCCCcccCCc
Q 018197 331 AKFCDECGAPYL-----RETSKFCSECGVK 355 (359)
Q Consensus 331 sKFCpeCGt~l~-----~~~AKFCpECGtK 355 (359)
.+.|+.||+++. .-+.-|||.|=+|
T Consensus 242 G~pC~~CG~~I~~~~~~gR~t~~CP~CQ~~ 271 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAGRGTHFCPVCQQK 271 (271)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTSCC
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCCCC
Confidence 678999999983 2246799999653
No 29
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=70.18 E-value=1.2 Score=34.53 Aligned_cols=26 Identities=27% Similarity=0.600 Sum_probs=19.1
Q ss_pred CCCCCCCCCCcCCCCCC----CCCCCCCcc
Q 018197 326 MPASPAKFCDECGAPYL----RETSKFCSE 351 (359)
Q Consensus 326 ~p~~~sKFCpeCGt~l~----~~~AKFCpE 351 (359)
|.....+.||.||.++. .+.-.||++
T Consensus 4 m~~~~~~~CP~Cgkp~~W~~~~~~rPFCSe 33 (68)
T 1lv3_A 4 MSETITVNCPTCGKTVVWGEISPFRPFCSK 33 (68)
T ss_dssp CCCCCEEECTTTCCEEECSSSSSCCSSSSH
T ss_pred CCCCCcCcCCCCCCcccccccCCCCcccCH
Confidence 44456788999999974 345789986
No 30
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=69.06 E-value=1.7 Score=31.80 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=18.3
Q ss_pred CCCCcCCC-CCC---CCCCCCCcccCCcC
Q 018197 332 KFCDECGA-PYL---RETSKFCSECGVKR 356 (359)
Q Consensus 332 KFCpeCGt-~l~---~~~AKFCpECGtKr 356 (359)
..||+||. .+. ..+--.|.+||.-+
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEE
Confidence 36999987 442 34678999999754
No 31
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=68.40 E-value=1.8 Score=37.39 Aligned_cols=23 Identities=30% Similarity=0.936 Sum_probs=18.0
Q ss_pred CCcCCCCCCCCCCCCCcccCCcC
Q 018197 334 CDECGAPYLRETSKFCSECGVKR 356 (359)
Q Consensus 334 CpeCGt~l~~~~AKFCpECGtKr 356 (359)
|+.||.-+......-||-||.+.
T Consensus 141 C~~CG~i~~~~~p~~CP~Cg~~~ 163 (170)
T 3pwf_A 141 CPICGYTAVDEAPEYCPVCGAPK 163 (170)
T ss_dssp CTTTCCEEESCCCSBCTTTCCBG
T ss_pred eCCCCCeeCCCCCCCCCCCCCCH
Confidence 99999887544456899999764
No 32
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=65.97 E-value=1.7 Score=36.01 Aligned_cols=25 Identities=32% Similarity=0.777 Sum_probs=20.6
Q ss_pred CCCCCcCCCCCC------CCCCCCCcccCCc
Q 018197 331 AKFCDECGAPYL------RETSKFCSECGVK 355 (359)
Q Consensus 331 sKFCpeCGt~l~------~~~AKFCpECGtK 355 (359)
--+|-.||.+++ .+++.+|-+|-..
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~ 86 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQE 86 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHH
Confidence 468999999984 5689999999643
No 33
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=65.92 E-value=1.7 Score=37.22 Aligned_cols=23 Identities=30% Similarity=0.928 Sum_probs=19.4
Q ss_pred CCCCcCCCCCC------CCCCCCCcccCC
Q 018197 332 KFCDECGAPYL------RETSKFCSECGV 354 (359)
Q Consensus 332 KFCpeCGt~l~------~~~AKFCpECGt 354 (359)
-+|-.||.+++ .+++.+|-+|-.
T Consensus 112 g~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~ 140 (151)
T 1tjl_A 112 GYCESCGVEIGIRRLEARPTADLCIDCKT 140 (151)
T ss_dssp SBCSSSSCBCCHHHHHHCTTCCSCHHHHH
T ss_pred ceeCCCCCcchHHHHhcCCCcchhHHHHH
Confidence 47999999984 568999999954
No 34
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=62.60 E-value=1.2 Score=36.13 Aligned_cols=24 Identities=29% Similarity=0.682 Sum_probs=19.7
Q ss_pred CCCCCcCCCCCC------CCCCCCCcccCC
Q 018197 331 AKFCDECGAPYL------RETSKFCSECGV 354 (359)
Q Consensus 331 sKFCpeCGt~l~------~~~AKFCpECGt 354 (359)
--+|-.||.+++ .+++.+|-+|-.
T Consensus 81 yg~C~~Cg~~I~~~Rl~a~P~a~~Ci~Cq~ 110 (112)
T 2kq9_A 81 FGTCVKCGKRISEDRLKAVPYTPFCQECAA 110 (112)
T ss_dssp CSEETTTTEECCHHHHHHCSCCSSCHHHHH
T ss_pred cCeeCCCCCcccHHHHhcCCCcchhHHHHh
Confidence 357999999984 568999999954
No 35
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=61.50 E-value=2.4 Score=36.95 Aligned_cols=24 Identities=25% Similarity=0.683 Sum_probs=17.9
Q ss_pred CCCCcCCCCCC--CCCCCCCcccCCc
Q 018197 332 KFCDECGAPYL--RETSKFCSECGVK 355 (359)
Q Consensus 332 KFCpeCGt~l~--~~~AKFCpECGtK 355 (359)
--||+|+..+. ....--|||||.-
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred CCCCCCCCcceEecCCeEECCccccc
Confidence 45999999983 3446679999853
No 36
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=59.56 E-value=13 Score=26.70 Aligned_cols=8 Identities=38% Similarity=1.232 Sum_probs=5.3
Q ss_pred CCcCCCCC
Q 018197 334 CDECGAPY 341 (359)
Q Consensus 334 CpeCGt~l 341 (359)
|+.||..+
T Consensus 20 C~~C~~~f 27 (106)
T 2ee8_A 20 CKFCGRHF 27 (106)
T ss_dssp CSSSCCBC
T ss_pred CCCCCCcc
Confidence 66676665
No 37
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=58.63 E-value=3.4 Score=36.35 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=17.4
Q ss_pred CCCcCCCCCCCCCCCCCcccCCcC
Q 018197 333 FCDECGAPYLRETSKFCSECGVKR 356 (359)
Q Consensus 333 FCpeCGt~l~~~~AKFCpECGtKr 356 (359)
-|+.||.-+.......||-||.+.
T Consensus 173 ~C~~CG~i~~g~~p~~CP~C~~~k 196 (202)
T 1yuz_A 173 LCPICGYIHKGEDFEKCPICFRPK 196 (202)
T ss_dssp ECSSSCCEEESSCCSBCTTTCCBG
T ss_pred EECCCCCEEcCcCCCCCCCCCCCh
Confidence 399999887432236899999864
No 38
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=58.52 E-value=1.4 Score=36.95 Aligned_cols=28 Identities=18% Similarity=0.471 Sum_probs=19.7
Q ss_pred CCCCCCCcCCCCCCCCC----------------------CCCCcccCCcC
Q 018197 329 SPAKFCDECGAPYLRET----------------------SKFCSECGVKR 356 (359)
Q Consensus 329 ~~sKFCpeCGt~l~~~~----------------------AKFCpECGtKr 356 (359)
+....|.+||....... ..-||.||...
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~ 117 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHD 117 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCC
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCc
Confidence 44556999999863222 35599999874
No 39
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=56.21 E-value=1.7 Score=34.39 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=18.1
Q ss_pred CCCcCCCCC---CCCCCCCCcccCCcCc
Q 018197 333 FCDECGAPY---LRETSKFCSECGVKRL 357 (359)
Q Consensus 333 FCpeCGt~l---~~~~AKFCpECGtKr~ 357 (359)
.||.||..+ +..+.--|+.||....
T Consensus 29 ~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 29 ACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp ECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCCCCCCcceeccCCCeEECCCCCCEec
Confidence 499999976 2334556999998753
No 40
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=55.90 E-value=5.8 Score=30.27 Aligned_cols=15 Identities=13% Similarity=0.530 Sum_probs=9.4
Q ss_pred CCCCCCCCCcCCCCC
Q 018197 327 PASPAKFCDECGAPY 341 (359)
Q Consensus 327 p~~~sKFCpeCGt~l 341 (359)
.....++||.|++.+
T Consensus 21 ~~~~~~wCP~C~~~~ 35 (86)
T 2ct7_A 21 RDPKFLWCAQCSFGF 35 (86)
T ss_dssp SCCCEECCSSSCCCE
T ss_pred cCCCEeECcCCCchh
Confidence 334456788787765
No 41
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=51.34 E-value=17 Score=24.83 Aligned_cols=24 Identities=42% Similarity=0.899 Sum_probs=16.3
Q ss_pred CCCCcCCCCCC-------------CCCCCCCcccCCc
Q 018197 332 KFCDECGAPYL-------------RETSKFCSECGVK 355 (359)
Q Consensus 332 KFCpeCGt~l~-------------~~~AKFCpECGtK 355 (359)
--|+.||..+. ....--|+.||..
T Consensus 19 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 55 (77)
T 2cot_A 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKA 55 (77)
T ss_dssp SBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCE
T ss_pred EECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCc
Confidence 34999999872 1112359999976
No 42
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=51.17 E-value=5.6 Score=35.50 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=11.5
Q ss_pred CCCcCCCCCCC---------CCCCCCcccCC
Q 018197 333 FCDECGAPYLR---------ETSKFCSECGV 354 (359)
Q Consensus 333 FCpeCGt~l~~---------~~AKFCpECGt 354 (359)
-|.-|+..+++ ..--|||+||.
T Consensus 200 ~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgR 230 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLTSGDMITCPYCGR 230 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHHSSSCEECTTTCC
T ss_pred ccCCCCeeeCHHHHHHHHCCCCEEECCCCCe
Confidence 46666666531 22446666664
No 43
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=49.99 E-value=11 Score=27.38 Aligned_cols=9 Identities=33% Similarity=1.062 Sum_probs=5.9
Q ss_pred CCcccCCcC
Q 018197 348 FCSECGVKR 356 (359)
Q Consensus 348 FCpECGtKr 356 (359)
-||.||...
T Consensus 38 ~CP~Cg~~K 46 (52)
T 1e8j_A 38 ACPVCGASK 46 (52)
T ss_dssp CCSSSCCCT
T ss_pred cCCCCCCcH
Confidence 577777653
No 44
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=49.97 E-value=5.6 Score=24.67 Aligned_cols=21 Identities=24% Similarity=0.484 Sum_probs=15.2
Q ss_pred CCCcCCCCCC-------------CCCCCCCcccC
Q 018197 333 FCDECGAPYL-------------RETSKFCSECG 353 (359)
Q Consensus 333 FCpeCGt~l~-------------~~~AKFCpECG 353 (359)
-|+.||..+. .+...-|+.||
T Consensus 12 ~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 12 SCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45 (45)
T ss_dssp EETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred cCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence 3999998872 23356699997
No 45
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=49.19 E-value=2.4 Score=32.72 Aligned_cols=21 Identities=38% Similarity=1.001 Sum_probs=13.9
Q ss_pred CCcCCCCCCC-C--CCCCCcccCCcC
Q 018197 334 CDECGAPYLR-E--TSKFCSECGVKR 356 (359)
Q Consensus 334 CpeCGt~l~~-~--~AKFCpECGtKr 356 (359)
|| ||..... . --+-|| ||+.+
T Consensus 7 C~-C~~~~~~~~~~kT~~C~-CG~~~ 30 (71)
T 1gh9_A 7 CD-CGRALYSREGAKTRKCV-CGRTV 30 (71)
T ss_dssp ET-TSCCEEEETTCSEEEET-TTEEE
T ss_pred CC-CCCEEEEcCCCcEEECC-CCCee
Confidence 88 8887632 2 246788 88764
No 46
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=48.00 E-value=3.8 Score=35.45 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=20.0
Q ss_pred cchhHHHHhhCCCCCccceehhhhhhhhhhhc
Q 018197 106 GGLYRSLAKKFPKKGSCTYKRRELATSLETRT 137 (359)
Q Consensus 106 gglyr~l~kkfpkkg~c~fkRRElAts~etrt 137 (359)
-.+|.-++..+=+.|---+-+-=.++|.+.|.
T Consensus 24 ~~~Yl~~A~~a~~~G~~~iA~~f~~~A~eE~~ 55 (191)
T 1lko_A 24 RNRYNYFGGQAKKDGFVQISDIFAETADQERE 55 (191)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHH
Confidence 35677777777776655555555566666554
No 47
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=46.20 E-value=2.9 Score=42.53 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=16.6
Q ss_pred HHHHHHHhhhhhcccc-chhhhhHHHHhhcchhHH
Q 018197 78 TLVNDVNLRLASFNGI-REKTIGVALEAAGGLYRS 111 (359)
Q Consensus 78 tlv~~vn~rlasl~g~-~ekt~gvaleaagglyr~ 111 (359)
+|-.|.|.+|- + -.+|| .+|=.||.+
T Consensus 249 ~LQ~~As~~lg----~sa~~tm----~iaQ~LYE~ 275 (633)
T 2gai_A 249 TLQQEAYSKLG----FSVSKTM----MIAQQLYEG 275 (633)
T ss_dssp HHHHHHHHHHC----CCHHHHH----HHHHHHHHC
T ss_pred HHHHHHHHHcC----CCHHHHH----HHHHHHhhc
Confidence 67888888873 3 24555 445568874
No 48
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=45.45 E-value=6.7 Score=38.33 Aligned_cols=27 Identities=33% Similarity=0.855 Sum_probs=19.4
Q ss_pred CCCCCCcCCCCCCC-------CCCCCCcccCCcC
Q 018197 330 PAKFCDECGAPYLR-------ETSKFCSECGVKR 356 (359)
Q Consensus 330 ~sKFCpeCGt~l~~-------~~AKFCpECGtKr 356 (359)
...+|..||.++.. ....||+.||.+.
T Consensus 33 ~~~~c~~c~~~~~~~~~~~~~~~~~~c~~c~~~~ 66 (681)
T 2pzi_A 33 SKRFCWNCGRPVGRSDSETKGASEGWCPYCGSPY 66 (681)
T ss_dssp GGCBCTTTCCBCSCC-----CCSEEECTTTCCEE
T ss_pred ccccCccCCCcCCCcccCCCcccCCcCCCCCCcc
Confidence 45689999988632 2357999999864
No 49
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=45.17 E-value=2.6 Score=31.60 Aligned_cols=11 Identities=18% Similarity=0.631 Sum_probs=8.1
Q ss_pred CCCCcccCCcC
Q 018197 346 SKFCSECGVKR 356 (359)
Q Consensus 346 AKFCpECGtKr 356 (359)
+-+|+.||...
T Consensus 36 ~~~C~~CGE~~ 46 (78)
T 3ga8_A 36 GLYCVHCEESI 46 (78)
T ss_dssp EEEETTTCCEE
T ss_pred eEECCCCCCEE
Confidence 77888888653
No 50
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=44.60 E-value=16 Score=28.60 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=19.0
Q ss_pred CCCCcCCCCCC---CCCCCCCcccCCcCcC
Q 018197 332 KFCDECGAPYL---RETSKFCSECGVKRLG 358 (359)
Q Consensus 332 KFCpeCGt~l~---~~~AKFCpECGtKr~~ 358 (359)
-.||.||..-+ ..+.--|..||.+..|
T Consensus 27 y~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 27 YDCSFCGKKTVKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp BCCSSCCSSCBSBCSSSCBCCSSSCCCCCC
T ss_pred ccCCCCCCceeEecCCCeEECCCCCCEEeC
Confidence 34999998753 2345679999988653
No 51
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=44.46 E-value=8.8 Score=31.58 Aligned_cols=23 Identities=39% Similarity=0.989 Sum_probs=19.8
Q ss_pred CCcCCCCC--------CCCCCCCCcccCCcC
Q 018197 334 CDECGAPY--------LRETSKFCSECGVKR 356 (359)
Q Consensus 334 CpeCGt~l--------~~~~AKFCpECGtKr 356 (359)
|.+|+.++ ..++.+-||.|+++.
T Consensus 38 C~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 38 CNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp CSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred eeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 99999998 356799999999985
No 52
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=43.27 E-value=16 Score=24.88 Aligned_cols=24 Identities=33% Similarity=0.758 Sum_probs=16.6
Q ss_pred CCCCcCCCCCC-------------CCCCCCCcccCCc
Q 018197 332 KFCDECGAPYL-------------RETSKFCSECGVK 355 (359)
Q Consensus 332 KFCpeCGt~l~-------------~~~AKFCpECGtK 355 (359)
--|+.||..+. ....--|+.||..
T Consensus 18 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~ 54 (74)
T 2lce_A 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQ 54 (74)
T ss_dssp BCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCE
T ss_pred eECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCch
Confidence 34999999872 1223359999976
No 53
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=42.01 E-value=5.1 Score=35.08 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=17.5
Q ss_pred CCcCCCCCC--CCCCCCCcccCCc
Q 018197 334 CDECGAPYL--RETSKFCSECGVK 355 (359)
Q Consensus 334 CpeCGt~l~--~~~AKFCpECGtK 355 (359)
||.|.+++. ..+.-+|+.||+.
T Consensus 45 Cp~CnKKV~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 45 CTCQGKSVLKYHGDSFFCESCQQF 68 (172)
T ss_dssp CTTSCCCEEEETTTEEEETTTTEE
T ss_pred chhhCCEeeeCCCCeEECCCCCCC
Confidence 999999985 3345579999985
No 54
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=41.58 E-value=9.4 Score=25.04 Aligned_cols=29 Identities=17% Similarity=0.516 Sum_probs=21.3
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCcccCCcCc
Q 018197 328 ASPAKFCDECGAPYLRETSKFCSECGVKRL 357 (359)
Q Consensus 328 ~~~sKFCpeCGt~l~~~~AKFCpECGtKr~ 357 (359)
..+...|+.||..-. ..-..|-.||+++.
T Consensus 2 k~gDW~C~~C~~~Nf-a~r~~C~~C~~pr~ 30 (32)
T 2lk0_A 2 KFEDWLCNKCCLNNF-RKRLKCFRCGADKF 30 (32)
T ss_dssp CCSEEECTTTCCEEE-TTCCBCTTTCCBTT
T ss_pred CCCCCCcCcCcCCcC-hhcceecCCCCcCC
Confidence 345567999988754 34678999999874
No 55
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=39.79 E-value=9.6 Score=35.86 Aligned_cols=23 Identities=26% Similarity=0.741 Sum_probs=17.7
Q ss_pred CCCcCCCCCC-------CCCCCCCcccCCc
Q 018197 333 FCDECGAPYL-------RETSKFCSECGVK 355 (359)
Q Consensus 333 FCpeCGt~l~-------~~~AKFCpECGtK 355 (359)
.|+.||+++. .-..-|||.|-+-
T Consensus 253 pC~~CGt~I~~~~~g~~gRsTyfCp~~~~~ 282 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGENSRMTYFCPHCQKH 282 (287)
T ss_dssp BCTTTCCBCEEECSSTTCCCEEECTTTSCC
T ss_pred CCCCCCCEEEEEEecCCCCCEEECCCcccc
Confidence 6999999982 2346799999763
No 56
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=39.48 E-value=6.1 Score=28.27 Aligned_cols=23 Identities=35% Similarity=0.878 Sum_probs=14.8
Q ss_pred CCcCCCCCCCC-----------CCCCCcccCCcC
Q 018197 334 CDECGAPYLRE-----------TSKFCSECGVKR 356 (359)
Q Consensus 334 CpeCGt~l~~~-----------~AKFCpECGtKr 356 (359)
|..||.-+.+. ..--||.||...
T Consensus 7 C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~k 40 (46)
T 6rxn_A 7 CNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSK 40 (46)
T ss_dssp ETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCBG
T ss_pred CCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCcH
Confidence 88888776321 123789888764
No 57
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=39.19 E-value=18 Score=27.22 Aligned_cols=26 Identities=19% Similarity=0.533 Sum_probs=17.4
Q ss_pred CCCCCcCCCCCC-------------CCCCCCCcccCCcC
Q 018197 331 AKFCDECGAPYL-------------RETSKFCSECGVKR 356 (359)
Q Consensus 331 sKFCpeCGt~l~-------------~~~AKFCpECGtKr 356 (359)
.-.|+.||..+. .+-.--|..||+..
T Consensus 28 ~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F 66 (85)
T 2lv2_A 28 CHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATF 66 (85)
T ss_dssp TEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEE
T ss_pred CEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEe
Confidence 345999999972 11123599999863
No 58
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=38.88 E-value=8.8 Score=29.26 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=16.6
Q ss_pred CCCcCCCCCC---CCCCCCCcccCCc
Q 018197 333 FCDECGAPYL---RETSKFCSECGVK 355 (359)
Q Consensus 333 FCpeCGt~l~---~~~AKFCpECGtK 355 (359)
-||.|+.++. ..+.-.|++||..
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (69)
T 2pk7_A 10 ACPICKGPLKLSADKTELISKGAGLA 35 (69)
T ss_dssp CCTTTCCCCEECTTSSEEEETTTTEE
T ss_pred eCCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 5999998883 2344579999865
No 59
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=38.53 E-value=8.9 Score=29.16 Aligned_cols=23 Identities=17% Similarity=0.530 Sum_probs=16.5
Q ss_pred CCCcCCCCCC---CCCCCCCcccCCc
Q 018197 333 FCDECGAPYL---RETSKFCSECGVK 355 (359)
Q Consensus 333 FCpeCGt~l~---~~~AKFCpECGtK 355 (359)
-||.|+.++. ..+.-.|++||..
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (68)
T 2hf1_A 10 VCPLCKGPLVFDKSKDELICKGDRLA 35 (68)
T ss_dssp BCTTTCCBCEEETTTTEEEETTTTEE
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 4999998873 2345579999865
No 60
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=38.21 E-value=16 Score=26.11 Aligned_cols=25 Identities=36% Similarity=0.837 Sum_probs=18.7
Q ss_pred CCCCCCcCCCCCC------CCCCCCCcccCC
Q 018197 330 PAKFCDECGAPYL------RETSKFCSECGV 354 (359)
Q Consensus 330 ~sKFCpeCGt~l~------~~~AKFCpECGt 354 (359)
..+.|..||+.-- +.+.-.|..||-
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl 33 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGL 33 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHH
Confidence 4788999999863 234567999985
No 61
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=38.16 E-value=9.3 Score=29.04 Aligned_cols=24 Identities=4% Similarity=0.101 Sum_probs=17.0
Q ss_pred CCCCcCCCCCC---CCCCCCCcccCCc
Q 018197 332 KFCDECGAPYL---RETSKFCSECGVK 355 (359)
Q Consensus 332 KFCpeCGt~l~---~~~AKFCpECGtK 355 (359)
--||.|+.++. ..+.-.|++||..
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLA 35 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 35999998873 2345589999865
No 62
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=37.74 E-value=22 Score=28.59 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=22.6
Q ss_pred CCCCCCCC----CCcCCCCCC----CCCCCCCcccCCcC
Q 018197 326 MPASPAKF----CDECGAPYL----RETSKFCSECGVKR 356 (359)
Q Consensus 326 ~p~~~sKF----CpeCGt~l~----~~~AKFCpECGtKr 356 (359)
.|.+.++| |+.|+.... ......|..||+-+
T Consensus 25 v~~PnS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L 63 (82)
T 3u5c_b 25 VQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTIL 63 (82)
T ss_dssp SCCCCCCEEEEECTTSCSCEEEESBCSSCCCCSSSCCCC
T ss_pred ccCCCCcEEEEECCCCCCeeEEEecCCeEEEccccCCEE
Confidence 46677777 999988752 34577899998865
No 63
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.38 E-value=13 Score=28.61 Aligned_cols=31 Identities=29% Similarity=0.732 Sum_probs=23.1
Q ss_pred CCCCCCCC----CCcCCCCCC----CCCCCCCcccCCcC
Q 018197 326 MPASPAKF----CDECGAPYL----RETSKFCSECGVKR 356 (359)
Q Consensus 326 ~p~~~sKF----CpeCGt~l~----~~~AKFCpECGtKr 356 (359)
.|.+.+.| |+.|+.... ......|..||+-+
T Consensus 6 v~~PnS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L 44 (63)
T 3j20_W 6 IPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATL 44 (63)
T ss_dssp CCCCSCCEEEEECSSSCCEEEEESSCSSCEECSSSCCEE
T ss_pred ccCCCCcEEEEECCCCCCeeEEEecCCeEEEccCcCCEE
Confidence 56677777 999988752 34577899999864
No 64
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=36.36 E-value=8.1 Score=29.51 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=16.3
Q ss_pred CCCcCCCCCC---CCCCCCCcccCCc
Q 018197 333 FCDECGAPYL---RETSKFCSECGVK 355 (359)
Q Consensus 333 FCpeCGt~l~---~~~AKFCpECGtK 355 (359)
-||.|+.++. ..+.-.|++||..
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (70)
T 2js4_A 10 VCPVCKGRLEFQRAQAELVCNADRLA 35 (70)
T ss_dssp BCTTTCCBEEEETTTTEEEETTTTEE
T ss_pred ECCCCCCcCEEeCCCCEEEcCCCCce
Confidence 5899988872 2345578888864
No 65
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=36.16 E-value=92 Score=24.81 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=16.6
Q ss_pred CCCCCCcCCCCCCCCC------------CCCCcccCCcC
Q 018197 330 PAKFCDECGAPYLRET------------SKFCSECGVKR 356 (359)
Q Consensus 330 ~sKFCpeCGt~l~~~~------------AKFCpECGtKr 356 (359)
....|..||.++.... -=-|..|++.+
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L 98 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQL 98 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBG
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcc
Confidence 3566888888763210 12477888776
No 66
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.00 E-value=32 Score=24.78 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=8.2
Q ss_pred CCCCCCCcCCCCC
Q 018197 329 SPAKFCDECGAPY 341 (359)
Q Consensus 329 ~~sKFCpeCGt~l 341 (359)
.....|..|+..+
T Consensus 13 ~~~~~C~~C~~~I 25 (79)
T 1x62_A 13 QKLPMCDKCGTGI 25 (79)
T ss_dssp CCCCCCSSSCCCC
T ss_pred CCCCccccCCCCc
Confidence 3455677777765
No 67
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=34.04 E-value=29 Score=22.45 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=15.7
Q ss_pred CCCcCCCCCC--------------CCCCCCCcccCCcC
Q 018197 333 FCDECGAPYL--------------RETSKFCSECGVKR 356 (359)
Q Consensus 333 FCpeCGt~l~--------------~~~AKFCpECGtKr 356 (359)
-|+.||..+. .+..--|+.||+..
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F 51 (54)
T 2eps_A 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51 (54)
T ss_dssp ECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSS
T ss_pred ECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Confidence 4999998761 11233599999763
No 68
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=33.91 E-value=26 Score=25.83 Aligned_cols=23 Identities=30% Similarity=0.720 Sum_probs=16.8
Q ss_pred CCcCCCCCCCC-----CCCCCcccCCcC
Q 018197 334 CDECGAPYLRE-----TSKFCSECGVKR 356 (359)
Q Consensus 334 CpeCGt~l~~~-----~AKFCpECGtKr 356 (359)
|-.||+.+..+ -.--||-||-++
T Consensus 6 C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 6 CGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp CCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred eeccCCCccHHHHhhCCCcccCccCcEE
Confidence 89999987321 245699999875
No 69
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=33.08 E-value=22 Score=22.60 Aligned_cols=22 Identities=27% Similarity=0.764 Sum_probs=14.1
Q ss_pred CCcCCCCCC-------------CCCCCCCcccCCc
Q 018197 334 CDECGAPYL-------------RETSKFCSECGVK 355 (359)
Q Consensus 334 CpeCGt~l~-------------~~~AKFCpECGtK 355 (359)
|+.||..+. ....--|+.||..
T Consensus 4 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 38 (57)
T 1bbo_A 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFS 38 (57)
T ss_dssp CTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCE
T ss_pred CCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCch
Confidence 888888772 1112348888875
No 70
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=32.68 E-value=35 Score=26.59 Aligned_cols=34 Identities=21% Similarity=0.493 Sum_probs=26.5
Q ss_pred heeEeEEEeecceeeccCCCCChhhHHHHHHHhc
Q 018197 147 EKRVRFVVVNGLDIVEKPNNMPIEDAEWFKRLTG 180 (359)
Q Consensus 147 ekrvrfvVVnGl~IVE~p~Nlp~eDqewfkRLtg 180 (359)
.-++.+--.||..|-==.+.|..+|+++++++++
T Consensus 26 dgki~LhK~nGv~I~VP~~klS~~D~~yve~~~g 59 (68)
T 2hbp_A 26 KGKIHLHKANGVKIAVAADKLSNEDLAYVEKITG 59 (68)
T ss_dssp TTEEEEECTTSCEEEEETTSBCHHHHHHHHHHHS
T ss_pred CCEEEEEecCCcEEEeEhHHcCHHHHHHHHHHhc
Confidence 3467777788886643345799999999999999
No 71
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=32.50 E-value=13 Score=28.33 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=17.1
Q ss_pred CCCCcCCCCCC---CCCCCCCcccCCc
Q 018197 332 KFCDECGAPYL---RETSKFCSECGVK 355 (359)
Q Consensus 332 KFCpeCGt~l~---~~~AKFCpECGtK 355 (359)
--||.|+.++. ..+.-.|++||..
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~~~ 37 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLNLA 37 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEE
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCCcc
Confidence 35999998873 3345689999865
No 72
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=32.19 E-value=10 Score=38.84 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=3.9
Q ss_pred CCCCCCCcCCCCCCCC---CCCCCcccCC
Q 018197 329 SPAKFCDECGAPYLRE---TSKFCSECGV 354 (359)
Q Consensus 329 ~~sKFCpeCGt~l~~~---~AKFCpECGt 354 (359)
.+.-.|++||..-... ....||.||.
T Consensus 538 ~~~~~C~~CGy~~~~~~~~~~~~CP~Cg~ 566 (605)
T 1h7b_A 538 MPVDKCFTCGSTHEMTPTENGFVCSICGE 566 (605)
T ss_dssp CCEEET-----------------------
T ss_pred CCCccCcccCCcCccCccccCCcCCCCCC
Confidence 4466799999642101 1367999995
No 73
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=31.96 E-value=8.3 Score=37.94 Aligned_cols=24 Identities=33% Similarity=0.736 Sum_probs=17.4
Q ss_pred CCCcCCCCCC--------------CCCCCCCcccCCcC
Q 018197 333 FCDECGAPYL--------------RETSKFCSECGVKR 356 (359)
Q Consensus 333 FCpeCGt~l~--------------~~~AKFCpECGtKr 356 (359)
-||.||.... .-.+-.|+.||.|-
T Consensus 222 ~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~ 259 (404)
T 2qkd_A 222 NCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRT 259 (404)
T ss_dssp CCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEE
T ss_pred cCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcc
Confidence 4999998751 11367899999873
No 74
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=31.45 E-value=19 Score=22.89 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=15.8
Q ss_pred CCCcCCCCCC-------------CCCCCCCcccCCc
Q 018197 333 FCDECGAPYL-------------RETSKFCSECGVK 355 (359)
Q Consensus 333 FCpeCGt~l~-------------~~~AKFCpECGtK 355 (359)
-|+.||..+. .+..--|+.||..
T Consensus 6 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 41 (57)
T 3uk3_C 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYA 41 (57)
T ss_dssp BCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCE
T ss_pred cCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcch
Confidence 4999999872 1223359999975
No 75
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=31.35 E-value=15 Score=35.16 Aligned_cols=25 Identities=24% Similarity=0.600 Sum_probs=17.4
Q ss_pred CCCCcCCCCCC----CCCCCCCcccCCcC
Q 018197 332 KFCDECGAPYL----RETSKFCSECGVKR 356 (359)
Q Consensus 332 KFCpeCGt~l~----~~~AKFCpECGtKr 356 (359)
..|+.||.... .+-...|+.||.+.
T Consensus 245 ~~C~~C~~~~~~~~~~~~~~~C~~cg~~~ 273 (392)
T 3axs_A 245 QYCFNCMNREVVTDLYKFKEKCPHCGSKF 273 (392)
T ss_dssp EECTTTCCEEEECCGGGCCSBCTTTCSBC
T ss_pred EECCCCCCeEeecCCCCCCCcCCCCCCcc
Confidence 45999997632 12357899999875
No 76
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=30.99 E-value=13 Score=33.55 Aligned_cols=12 Identities=33% Similarity=0.955 Sum_probs=10.4
Q ss_pred CCCCCcccCCcC
Q 018197 345 TSKFCSECGVKR 356 (359)
Q Consensus 345 ~AKFCpECGtKr 356 (359)
..+||+.||++.
T Consensus 106 ~~~fC~~CG~~~ 117 (269)
T 1vk6_A 106 SHKYCGYCGHEM 117 (269)
T ss_dssp TTSBCTTTCCBE
T ss_pred cCCccccCCCcC
Confidence 479999999985
No 77
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=30.80 E-value=23 Score=29.45 Aligned_cols=26 Identities=19% Similarity=0.588 Sum_probs=18.4
Q ss_pred CCCCCcCCCCCCC--CCCCCCcccCCcC
Q 018197 331 AKFCDECGAPYLR--ETSKFCSECGVKR 356 (359)
Q Consensus 331 sKFCpeCGt~l~~--~~AKFCpECGtKr 356 (359)
.--|-.||..+.. ...--||.|+...
T Consensus 67 p~~C~~CG~~F~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 67 PAQCRKCGFVFKAEINIPSRCPKCKSEW 94 (105)
T ss_dssp CCBBTTTCCBCCCCSSCCSSCSSSCCCC
T ss_pred CcChhhCcCeecccCCCCCCCcCCCCCc
Confidence 3459999999821 1246899999764
No 78
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=30.78 E-value=6.2 Score=35.16 Aligned_cols=24 Identities=33% Similarity=0.843 Sum_probs=18.5
Q ss_pred CCCCcCCCCC----------------------CCCCCCCCcccCCc
Q 018197 332 KFCDECGAPY----------------------LRETSKFCSECGVK 355 (359)
Q Consensus 332 KFCpeCGt~l----------------------~~~~AKFCpECGtK 355 (359)
.||++|+..+ ..+..+-|.+||+-
T Consensus 123 wyc~~c~~~~~e~~f~~~dl~~~l~~~~~~f~~~~~~rtc~~Cg~~ 168 (174)
T 1yfu_A 123 WYCDACGHLVHRVEVQLKSIVTDLPPLFESFYASEDKRRCPHCGQV 168 (174)
T ss_dssp EECTTTCCEEEEEEECCSCHHHHSHHHHHHHHTCHHHHBCTTTCCB
T ss_pred EEcCCCCCEEEEEEEEEechhHhHHHHHHHHhcCHhhccCCCCCCc
Confidence 6899999876 12347899999984
No 79
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=30.65 E-value=20 Score=39.05 Aligned_cols=32 Identities=31% Similarity=0.665 Sum_probs=20.4
Q ss_pred cCCCCCCCCCCcCCCCC-CC---------CCCCCCcccCCcC
Q 018197 325 VMPASPAKFCDECGAPY-LR---------ETSKFCSECGVKR 356 (359)
Q Consensus 325 i~p~~~sKFCpeCGt~l-~~---------~~AKFCpECGtKr 356 (359)
+.|-.+--.||+|-..- .. --.|-||+||+++
T Consensus 496 VDPl~phy~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~~ 537 (1041)
T 3f2b_A 496 VNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKY 537 (1041)
T ss_dssp CCCSCSEEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCBC
T ss_pred cCCCcccccCccccccccccccccccccCCccccCccccccc
Confidence 44445445699997531 00 0168999999986
No 80
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=30.43 E-value=6.8 Score=34.45 Aligned_cols=26 Identities=19% Similarity=0.617 Sum_probs=21.9
Q ss_pred CCCCCCcCCCCCCCCCCCCCcccCCc
Q 018197 330 PAKFCDECGAPYLRETSKFCSECGVK 355 (359)
Q Consensus 330 ~sKFCpeCGt~l~~~~AKFCpECGtK 355 (359)
.+..|+.||+.++..+...|..|-.+
T Consensus 162 ~~~~C~~CGE~~~~~g~~~C~~C~~~ 187 (191)
T 3d00_A 162 KIVLCPQCREAYPAQDGELCLSCQGG 187 (191)
T ss_dssp CEEECTTTCCEEEGGGCSSCHHHHTT
T ss_pred CCEECCcCCCChhhCCCcCCccccCC
Confidence 35679999999988789999999754
No 81
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=30.16 E-value=21 Score=23.07 Aligned_cols=23 Identities=22% Similarity=0.631 Sum_probs=14.3
Q ss_pred CCCcCCCCCC-------------CCCCCCCcccCCc
Q 018197 333 FCDECGAPYL-------------RETSKFCSECGVK 355 (359)
Q Consensus 333 FCpeCGt~l~-------------~~~AKFCpECGtK 355 (359)
-|+.||..+. ....--|+.||..
T Consensus 4 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 39 (60)
T 2adr_A 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRA 39 (60)
T ss_dssp CCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCE
T ss_pred cCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCc
Confidence 3888888762 1112348888875
No 82
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=29.42 E-value=24 Score=30.08 Aligned_cols=27 Identities=19% Similarity=0.511 Sum_probs=22.6
Q ss_pred CCCCC-CCcCCCCCCCCCCCCCcccCCc
Q 018197 329 SPAKF-CDECGAPYLRETSKFCSECGVK 355 (359)
Q Consensus 329 ~~sKF-CpeCGt~l~~~~AKFCpECGtK 355 (359)
..+-| |.-||++|.....||=+.||=+
T Consensus 17 ~~GiY~C~~Cg~pLF~S~~KFdSG~GWP 44 (124)
T 2kao_A 17 EPGVYVCAKCSYELFSSHSKYAHSSPWP 44 (124)
T ss_dssp CCCEEEESSSCCCCCCTTTSCCCCCSSC
T ss_pred CCEEEEeCCCCCccccCcccccCCCCCh
Confidence 33444 9999999998899999999966
No 83
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=29.37 E-value=14 Score=26.80 Aligned_cols=21 Identities=33% Similarity=0.668 Sum_probs=15.8
Q ss_pred CCCCCCcCCCCCCCC----CCCCCc
Q 018197 330 PAKFCDECGAPYLRE----TSKFCS 350 (359)
Q Consensus 330 ~sKFCpeCGt~l~~~----~AKFCp 350 (359)
..+.|..||.+++.. .-|||+
T Consensus 17 ~~~~C~~CG~~i~~~~~~r~krFCS 41 (49)
T 2l8e_A 17 NLLKCEYCGKYAPAEQFRGSKRFCS 41 (49)
T ss_dssp SEEECTTTCCEEEGGGCTTTSSSCS
T ss_pred CCCcChhccCccccccCCCCCccCC
Confidence 345799999998632 369998
No 84
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=29.26 E-value=39 Score=27.14 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=18.9
Q ss_pred CCCCCCCCCCcCCCCC-----------CCCCCCC--CcccCCc
Q 018197 326 MPASPAKFCDECGAPY-----------LRETSKF--CSECGVK 355 (359)
Q Consensus 326 ~p~~~sKFCpeCGt~l-----------~~~~AKF--CpECGtK 355 (359)
.|... ..||.||..- .++-..| |.+||.+
T Consensus 68 lp~~~-~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~ 109 (113)
T 3h0g_I 68 LPRSD-KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFA 109 (113)
T ss_dssp SCBCC-SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCC
T ss_pred CCCcc-cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCE
Confidence 34444 6799999874 1122344 9999986
No 85
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=28.87 E-value=59 Score=21.28 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=21.1
Q ss_pred CCCCCCCcCCCCCCCCCCCCCcccCCcCc
Q 018197 329 SPAKFCDECGAPYLRETSKFCSECGVKRL 357 (359)
Q Consensus 329 ~~sKFCpeCGt~l~~~~AKFCpECGtKr~ 357 (359)
.+...|+.||..-.. .-..|-.||+++.
T Consensus 4 ~gDW~C~~C~~~Nfa-~R~~C~~C~~pk~ 31 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWA-RRSECNMCNTPKY 31 (33)
T ss_dssp SSSCBCSSSCCBCCT-TCSBCSSSCCBTT
T ss_pred CCCcccCCCCCcccc-ccccccccCCcCC
Confidence 345679999887643 4788999999864
No 86
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=28.52 E-value=14 Score=30.01 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=18.6
Q ss_pred CCCCcCCCCCC---CCCCCCCcccCCcCc
Q 018197 332 KFCDECGAPYL---RETSKFCSECGVKRL 357 (359)
Q Consensus 332 KFCpeCGt~l~---~~~AKFCpECGtKr~ 357 (359)
-+||.||..-+ ..+---|..||.+..
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 37 YFCEFCGKFAVKRKAVGIWGCKDCGKVKA 65 (92)
T ss_dssp BCCTTTCSSCBEEEETTEEECSSSCCEEE
T ss_pred ccCcccCCCeeEecCcceEEcCCCCCEEe
Confidence 35999998853 224557999998764
No 87
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=28.43 E-value=7.2 Score=34.90 Aligned_cols=24 Identities=17% Similarity=0.475 Sum_probs=18.2
Q ss_pred CCCCcCCCCC----------------------CCCCCCCCcccCCc
Q 018197 332 KFCDECGAPY----------------------LRETSKFCSECGVK 355 (359)
Q Consensus 332 KFCpeCGt~l----------------------~~~~AKFCpECGtK 355 (359)
.||++|+..+ ..+..+-|.+||+-
T Consensus 125 wyc~~c~~~~~e~~f~~~dl~~ql~~~~~~f~~~~e~rtc~~CG~~ 170 (176)
T 1zvf_A 125 WYCSHCRQVVHESELQMLDLGTQVKEAILDFENDVEKRTCFHCKTL 170 (176)
T ss_dssp EECTTTCCEEEEEECCSSSTTHHHHHHHHHHHTCHHHHBCTTTCCB
T ss_pred EEcCCCCCEEEEEEEEEechhHhHHHHHHHHhcChhhccCCCCCCc
Confidence 6899999876 12347889999984
No 88
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.28 E-value=19 Score=24.37 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=14.0
Q ss_pred CCcCCCCCC----------CCCCCCCcccCCcC
Q 018197 334 CDECGAPYL----------RETSKFCSECGVKR 356 (359)
Q Consensus 334 CpeCGt~l~----------~~~AKFCpECGtKr 356 (359)
|+.||..+. .+..--|+.||...
T Consensus 17 C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f 49 (62)
T 1vd4_A 17 CPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEV 49 (62)
T ss_dssp CSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBC
T ss_pred CCCCCchhccHHHhHhhcCCCCCEECCCCCCcc
Confidence 888887641 11223588888753
No 89
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.14 E-value=79 Score=23.09 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=9.4
Q ss_pred CCCCCCCcCCCCCC
Q 018197 329 SPAKFCDECGAPYL 342 (359)
Q Consensus 329 ~~sKFCpeCGt~l~ 342 (359)
.....|..|+.++.
T Consensus 13 ~~~~~C~~C~~~I~ 26 (80)
T 2dj7_A 13 RGPSHCAGCKEEIK 26 (80)
T ss_dssp SSCSCCTTTCCCCS
T ss_pred CCCCCCcCcCCeeC
Confidence 34566888887763
No 90
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.10 E-value=39 Score=24.69 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=7.5
Q ss_pred CCCCCCcCCCCC
Q 018197 330 PAKFCDECGAPY 341 (359)
Q Consensus 330 ~sKFCpeCGt~l 341 (359)
+.|-||.|+..+
T Consensus 5 ~~k~CP~C~~~I 16 (60)
T 1wd2_A 5 NTKECPKCHVTI 16 (60)
T ss_dssp CCCCCTTTCCCC
T ss_pred cceECcCCCCee
Confidence 356677776665
No 91
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=27.85 E-value=15 Score=34.32 Aligned_cols=25 Identities=16% Similarity=-0.009 Sum_probs=15.8
Q ss_pred CCCCC--cCCCCCC-----CCCCCCCcccCCc
Q 018197 331 AKFCD--ECGAPYL-----RETSKFCSECGVK 355 (359)
Q Consensus 331 sKFCp--eCGt~l~-----~~~AKFCpECGtK 355 (359)
.+-|+ .||+++. .-+.-|||.|=..
T Consensus 247 g~pC~~~~CG~~I~~~~~~gR~t~~CP~CQ~~ 278 (310)
T 3twl_A 247 KKPGKAFVDGKKIDFITAGGRTTAYVPELQKL 278 (310)
T ss_dssp SCTTSCEETTEECEECCE------ECTTTCCC
T ss_pred CCCCCCCCCCCeEEEEEECCcccEECCCCcCC
Confidence 56688 9999873 2358899999653
No 92
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=27.77 E-value=15 Score=29.89 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=18.4
Q ss_pred CCCCcCCCCCC---CCCCCCCcccCCcCc
Q 018197 332 KFCDECGAPYL---RETSKFCSECGVKRL 357 (359)
Q Consensus 332 KFCpeCGt~l~---~~~AKFCpECGtKr~ 357 (359)
-.||.||..-+ ..+---|..||.+..
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~~C~~~~A 65 (92)
T 3izc_m 37 YDCSFCGKKTVKRGAAGIWTCSCCKKTVA 65 (92)
T ss_dssp CCCSSSCSSCCEEEETTEEECTTTCCEEE
T ss_pred CcCCCCCCceeeecccceEEcCCCCCEEe
Confidence 35999997753 224457999998764
No 93
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=27.67 E-value=15 Score=23.89 Aligned_cols=14 Identities=50% Similarity=0.861 Sum_probs=11.9
Q ss_pred chhHHHHhhCCCCC
Q 018197 107 GLYRSLAKKFPKKG 120 (359)
Q Consensus 107 glyr~l~kkfpkkg 120 (359)
|||-||.|||-.|.
T Consensus 1 glfgklikkfgrka 14 (26)
T 2g9p_A 1 GLFGKLIKKFGRKA 14 (26)
T ss_dssp CHHHHHHHHHTSHH
T ss_pred CcHHHHHHHHhHHH
Confidence 79999999997664
No 94
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.64 E-value=24 Score=28.55 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=15.1
Q ss_pred CCCCCCC----CCcCCCCCC----CCCCCCCcccCCcC
Q 018197 327 PASPAKF----CDECGAPYL----RETSKFCSECGVKR 356 (359)
Q Consensus 327 p~~~sKF----CpeCGt~l~----~~~AKFCpECGtKr 356 (359)
|.+.++| |+.|+.... ......|..||+-+
T Consensus 28 ~~PnS~Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL 65 (86)
T 3iz6_X 28 QSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVL 65 (86)
T ss_dssp -----CEEEEECTTTCCEEEEETTCSSCCCCSSSCCCC
T ss_pred cCCCCcEeEEECCCCCCeeEEEecCCcEEEccCCCCEe
Confidence 4455555 777776541 23456677777654
No 95
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=27.36 E-value=27 Score=28.85 Aligned_cols=25 Identities=24% Similarity=0.728 Sum_probs=20.1
Q ss_pred CCCCCcCCCCCCCCCCCCCcccCCc
Q 018197 331 AKFCDECGAPYLRETSKFCSECGVK 355 (359)
Q Consensus 331 sKFCpeCGt~l~~~~AKFCpECGtK 355 (359)
-..|+.||.......-+-|..||.+
T Consensus 16 H~lCrRCG~~sfH~qK~~CgkCGYp 40 (97)
T 2zkr_2 16 HTLCRRCGSKAYHLQKSTCGKCGYP 40 (97)
T ss_dssp EECCTTTCSSCEETTSCCBTTTCTT
T ss_pred CCcCCCCCCccCcCccccCcccCCc
Confidence 4579999998755567889999965
No 96
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.87 E-value=27 Score=33.49 Aligned_cols=30 Identities=30% Similarity=0.584 Sum_probs=23.7
Q ss_pred CCCCCCCcCCCCCCCC-CCCCCcccCCcCcC
Q 018197 329 SPAKFCDECGAPYLRE-TSKFCSECGVKRLG 358 (359)
Q Consensus 329 ~~sKFCpeCGt~l~~~-~AKFCpECGtKr~~ 358 (359)
.+...||=||+++.+. .++.|+-||--.+|
T Consensus 276 ~~~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG 306 (320)
T 3mkr_B 276 KPVEKCPLSGACYSPEFKGQICKVTTVTEIG 306 (320)
T ss_dssp SCCEECTTTCCEECGGGTTSBCTTTSSBBSS
T ss_pred CCCccCCCCCCeechhhCCCCCCCCcCcccC
Confidence 4466799999999654 69999999976554
No 97
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=26.53 E-value=24 Score=28.24 Aligned_cols=31 Identities=19% Similarity=0.596 Sum_probs=23.2
Q ss_pred CCCCCCCC----CCcCCCCCC----CCCCCCCcccCCcC
Q 018197 326 MPASPAKF----CDECGAPYL----RETSKFCSECGVKR 356 (359)
Q Consensus 326 ~p~~~sKF----CpeCGt~l~----~~~AKFCpECGtKr 356 (359)
.|.+.+.| |+.|+.... ......|..||+-+
T Consensus 23 v~~PnS~Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L 61 (81)
T 2xzm_6 23 IQAPNSYFMDVKCAQCQNIQMIFSNAQSTIICEKCSAIL 61 (81)
T ss_dssp SCCCSCCEEEEECSSSCCEEEEETTCSSCEECSSSCCEE
T ss_pred eeCCCCcEEEeECCCCCCeeEEEecCccEEEccCCCCEE
Confidence 56677888 999988752 34577899999864
No 98
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.33 E-value=15 Score=29.45 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=18.5
Q ss_pred CCCCcCCCCCC---CCCCCCCcccCCcCc
Q 018197 332 KFCDECGAPYL---RETSKFCSECGVKRL 357 (359)
Q Consensus 332 KFCpeCGt~l~---~~~AKFCpECGtKr~ 357 (359)
-.||.||..-+ ..+---|..||.+..
T Consensus 36 y~CpfCGk~~vkR~a~GIW~C~kCg~~~A 64 (83)
T 3j21_i 36 HTCPVCGRKAVKRISTGIWQCQKCGATFA 64 (83)
T ss_dssp BCCSSSCSSCEEEEETTEEEETTTCCEEE
T ss_pred cCCCCCCCceeEecCcCeEEcCCCCCEEe
Confidence 34999998852 234557999998764
No 99
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.36 E-value=21 Score=31.75 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=18.3
Q ss_pred cCCCCCcccccccCC---------CCCCCCCCcCCCCCC
Q 018197 313 PLTGGHVGERLHVMP---------ASPAKFCDECGAPYL 342 (359)
Q Consensus 313 P~tgG~~gG~~~i~p---------~~~sKFCpeCGt~l~ 342 (359)
|+.+|.-||+-...| ....-+||+||.-+.
T Consensus 195 ~v~~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 195 TIKKQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILY 233 (256)
T ss_dssp ECBTTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEE
T ss_pred EeeCCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEE
Confidence 345555566444443 245578999998775
No 100
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=25.31 E-value=32 Score=24.86 Aligned_cols=23 Identities=22% Similarity=0.599 Sum_probs=13.6
Q ss_pred CCCcCCCCCCCC-----------CCCCCcccCCc
Q 018197 333 FCDECGAPYLRE-----------TSKFCSECGVK 355 (359)
Q Consensus 333 FCpeCGt~l~~~-----------~AKFCpECGtK 355 (359)
-|+.||..+... ..--|+.||..
T Consensus 18 ~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~ 51 (107)
T 1wjp_A 18 QCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLR 51 (107)
T ss_dssp BCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCC
T ss_pred ECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCc
Confidence 388888776311 12357777765
No 101
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=25.01 E-value=46 Score=27.22 Aligned_cols=31 Identities=23% Similarity=0.576 Sum_probs=22.0
Q ss_pred cCCCCCCCCCCcCCCCCCCCC-------CC-------CCcccCCc
Q 018197 325 VMPASPAKFCDECGAPYLRET-------SK-------FCSECGVK 355 (359)
Q Consensus 325 i~p~~~sKFCpeCGt~l~~~~-------AK-------FCpECGtK 355 (359)
..|.-.-.||..||+.++++. .+ -|.+||..
T Consensus 59 lp~~~KR~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~ 103 (120)
T 1x0t_A 59 IPRKWKRRYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYI 103 (120)
T ss_dssp CCTTTTTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCE
T ss_pred CCHHHHHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCE
Confidence 355566779999999996431 11 39999975
No 102
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=24.85 E-value=19 Score=28.87 Aligned_cols=25 Identities=32% Similarity=0.846 Sum_probs=16.3
Q ss_pred CC-CCcCCCCCCC----------CC--------CCCCcccCCcC
Q 018197 332 KF-CDECGAPYLR----------ET--------SKFCSECGVKR 356 (359)
Q Consensus 332 KF-CpeCGt~l~~----------~~--------AKFCpECGtKr 356 (359)
++ |..||.-+.. ++ .--||.||...
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K 78 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATK 78 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCCG
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCCH
Confidence 44 9999977632 11 22699999764
No 103
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=24.81 E-value=14 Score=29.05 Aligned_cols=10 Identities=40% Similarity=1.119 Sum_probs=5.4
Q ss_pred CCCcccCCcC
Q 018197 347 KFCSECGVKR 356 (359)
Q Consensus 347 KFCpECGtKr 356 (359)
.||+.||+.+
T Consensus 68 ~FC~~CGs~l 77 (118)
T 3fac_A 68 WFCRTCGIYT 77 (118)
T ss_dssp EEETTTCCEE
T ss_pred EECCCCCccc
Confidence 3566666543
No 104
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.18 E-value=99 Score=22.51 Aligned_cols=8 Identities=38% Similarity=1.041 Sum_probs=4.4
Q ss_pred CCcCCCCC
Q 018197 334 CDECGAPY 341 (359)
Q Consensus 334 CpeCGt~l 341 (359)
|..|+..|
T Consensus 45 C~~C~~~L 52 (82)
T 2co8_A 45 CHTCEATL 52 (82)
T ss_dssp CSSSCCBC
T ss_pred EcCCCCCc
Confidence 55555554
No 105
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.99 E-value=33 Score=21.45 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=14.3
Q ss_pred CCCcCCCCCC-------------CCCCCCCcccCC
Q 018197 333 FCDECGAPYL-------------RETSKFCSECGV 354 (359)
Q Consensus 333 FCpeCGt~l~-------------~~~AKFCpECGt 354 (359)
-|..||..+. .+..--|+.||+
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp EETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred eCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence 3999998762 112335888885
No 106
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.88 E-value=69 Score=24.17 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=24.0
Q ss_pred cccccCCCCCCCCCCcCCCCCCC---------CCCCCCcccCCc
Q 018197 321 ERLHVMPASPAKFCDECGAPYLR---------ETSKFCSECGVK 355 (359)
Q Consensus 321 G~~~i~p~~~sKFCpeCGt~l~~---------~~AKFCpECGtK 355 (359)
|...-.|......|..|+.++-. =|.-||..|-..
T Consensus 4 ~~~~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 4 GSSGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCCSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34455677888899999998721 146677777554
No 107
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.01 E-value=26 Score=33.75 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=24.1
Q ss_pred CCCCCCCCcCCCCCCCC-CCCCCcccCCcCcC
Q 018197 328 ASPAKFCDECGAPYLRE-TSKFCSECGVKRLG 358 (359)
Q Consensus 328 ~~~sKFCpeCGt~l~~~-~AKFCpECGtKr~~ 358 (359)
+.+...||=||+++.+. .++.|+-||--.+|
T Consensus 284 g~~~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG 315 (325)
T 3mv2_A 284 DTPSVSDPLTGSKYVITEKDKIDRIAMISKIG 315 (325)
T ss_dssp SSCEEECTTTCCEEEGGGTTSBCSSSSCBBTT
T ss_pred CCCCccCCCCCCeechhhCCCCCCCCcCcccC
Confidence 34567799999999544 69999999976554
No 108
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=22.92 E-value=22 Score=25.06 Aligned_cols=22 Identities=36% Similarity=0.889 Sum_probs=15.3
Q ss_pred CCcCCCCCC-------------CCCCCCCcccCCc
Q 018197 334 CDECGAPYL-------------RETSKFCSECGVK 355 (359)
Q Consensus 334 CpeCGt~l~-------------~~~AKFCpECGtK 355 (359)
|..||..+. .+-.--|++||+.
T Consensus 7 C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~ 41 (60)
T 4gzn_C 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKC 41 (60)
T ss_dssp CTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCE
T ss_pred CCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCC
Confidence 899998872 1223468999876
No 109
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=22.75 E-value=20 Score=30.61 Aligned_cols=22 Identities=18% Similarity=0.635 Sum_probs=16.8
Q ss_pred CCc--CCCCCCCC--CCCCCcccCCc
Q 018197 334 CDE--CGAPYLRE--TSKFCSECGVK 355 (359)
Q Consensus 334 Cpe--CGt~l~~~--~AKFCpECGtK 355 (359)
||. |++++... +.-.|+.||..
T Consensus 46 C~~~~CnKKv~~~~~g~~~CekC~~~ 71 (181)
T 1l1o_C 46 CPTQDCNKKVIDQQNGLYRCEKCDTE 71 (181)
T ss_dssp CCSTTCCCBCEEETTTEEEETTTTEE
T ss_pred CCchhcCCccccCCCCeEECCCCCCc
Confidence 999 99998642 33469999875
No 110
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=22.67 E-value=16 Score=28.40 Aligned_cols=24 Identities=17% Similarity=0.490 Sum_probs=16.9
Q ss_pred CCCCcCCCCCCCC---CCCCCcccCCc
Q 018197 332 KFCDECGAPYLRE---TSKFCSECGVK 355 (359)
Q Consensus 332 KFCpeCGt~l~~~---~AKFCpECGtK 355 (359)
.+|..||++.... -+-.|+.||.-
T Consensus 38 I~CnDC~~~s~v~~h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 38 ILCNDCNGRSTVQFHILGMKCKICESY 64 (79)
T ss_dssp EEESSSCCEEEEECCTTCCCCTTTSCC
T ss_pred EECCCCCCCccCCceeecccCcCCCCc
Confidence 5899999986321 13369999964
No 111
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=22.15 E-value=12 Score=31.60 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=17.7
Q ss_pred CCCCcCCCCC---CCCCCCCCcccCCcCc
Q 018197 332 KFCDECGAPY---LRETSKFCSECGVKRL 357 (359)
Q Consensus 332 KFCpeCGt~l---~~~~AKFCpECGtKr~ 357 (359)
-+||.||..- ...+.--|..||....
T Consensus 61 ytCPfCGk~~vKR~avGIW~C~~Cgk~fA 89 (116)
T 3cc2_Z 61 HACPNCGEDRVDRQGTGIWQCSYCDYKFT 89 (116)
T ss_dssp EECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred CcCCCCCCceeEecCceeEECCCCCCEEE
Confidence 4599999842 1224556999998754
No 112
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=22.00 E-value=43 Score=25.04 Aligned_cols=26 Identities=31% Similarity=0.784 Sum_probs=19.6
Q ss_pred CCCCCCCcCCCCCCCCCCCCCcccCCc
Q 018197 329 SPAKFCDECGAPYLRETSKFCSECGVK 355 (359)
Q Consensus 329 ~~sKFCpeCGt~l~~~~AKFCpECGtK 355 (359)
...-||..||..+... +.-|.+||..
T Consensus 33 ~~pt~C~~C~~~l~~q-G~kC~~C~~~ 58 (72)
T 2fnf_X 33 GGPGWCDLCGREVLRQ-ALRCANCKFT 58 (72)
T ss_dssp SSCCBCTTTSSBCSSC-CEECTTSSCE
T ss_pred CCCcchhhhhHHHHhC-cCccCCCCCe
Confidence 3467899999998444 5569999865
No 113
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=21.86 E-value=54 Score=26.98 Aligned_cols=31 Identities=26% Similarity=0.551 Sum_probs=21.9
Q ss_pred cCCCCCCCCCCcCCCCCCCCC-------CC-------CCcccCCc
Q 018197 325 VMPASPAKFCDECGAPYLRET-------SK-------FCSECGVK 355 (359)
Q Consensus 325 i~p~~~sKFCpeCGt~l~~~~-------AK-------FCpECGtK 355 (359)
..|.-.-.||..||+.++++. .+ -|.+||..
T Consensus 54 lp~~~KR~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~ 98 (123)
T 2k3r_A 54 IPRKWKRRYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHI 98 (123)
T ss_dssp CSSTTTTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEE
T ss_pred CCHHHHHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCE
Confidence 355566779999999996431 11 49999975
No 114
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=21.84 E-value=15 Score=31.97 Aligned_cols=23 Identities=30% Similarity=0.752 Sum_probs=20.7
Q ss_pred CCCcCCCCCCCCCCCCCcccCCc
Q 018197 333 FCDECGAPYLRETSKFCSECGVK 355 (359)
Q Consensus 333 FCpeCGt~l~~~~AKFCpECGtK 355 (359)
.|.-||++|.....||-+.||-+
T Consensus 39 ~C~~Cg~pLF~S~~KFdSg~GWP 61 (143)
T 2l1u_A 39 HCVCCDSPLFSSEKKYCSGTGWP 61 (143)
T ss_dssp EESSSSCEEEEGGGBCTTTTCCS
T ss_pred EeCCCCCeeecCcccccCCCCCh
Confidence 39999999988889999999976
No 115
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=21.78 E-value=25 Score=26.49 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=21.0
Q ss_pred CCCCCCcCCCCCCCCCCCCCcccCCc
Q 018197 330 PAKFCDECGAPYLRETSKFCSECGVK 355 (359)
Q Consensus 330 ~sKFCpeCGt~l~~~~AKFCpECGtK 355 (359)
+-+.|-.|++.++. .|.-|-.||.+
T Consensus 18 ~k~ICrkC~ARnp~-~A~~CRKCg~~ 42 (56)
T 2ayj_A 18 LKKVCRKCGALNPI-RATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCEECT-TCSSCTTTCCC
T ss_pred chhhhccccCcCCc-ccccccCCCCC
Confidence 45679999999975 49999999976
No 116
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=21.64 E-value=54 Score=25.01 Aligned_cols=10 Identities=40% Similarity=0.853 Sum_probs=7.7
Q ss_pred CCCCcccCCc
Q 018197 346 SKFCSECGVK 355 (359)
Q Consensus 346 AKFCpECGtK 355 (359)
-||||-|.+-
T Consensus 49 kKycp~c~kH 58 (66)
T 3bbo_3 49 RKFCPYCYKH 58 (66)
T ss_dssp CCCCCSSSSC
T ss_pred EccCCCCCCe
Confidence 6788888765
No 117
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=21.63 E-value=80 Score=22.37 Aligned_cols=22 Identities=32% Similarity=0.774 Sum_probs=16.0
Q ss_pred CCCCCCCcCCCCCCCCCCCCCcccCC
Q 018197 329 SPAKFCDECGAPYLRETSKFCSECGV 354 (359)
Q Consensus 329 ~~sKFCpeCGt~l~~~~AKFCpECGt 354 (359)
.....|..||.+ ..+-|..|..
T Consensus 13 ~~~~~C~~C~~~----~~~~Cs~C~~ 34 (60)
T 2dj8_A 13 DSSESCWNCGRK----ASETCSGCNT 34 (60)
T ss_dssp CCSCCCSSSCSC----CCEECTTTSC
T ss_pred CCCcccccCCCC----CcccCCCCCC
Confidence 456789999984 3577877764
No 118
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.57 E-value=1.1e+02 Score=21.14 Aligned_cols=11 Identities=18% Similarity=0.588 Sum_probs=7.7
Q ss_pred CCCCcccCCcC
Q 018197 346 SKFCSECGVKR 356 (359)
Q Consensus 346 AKFCpECGtKr 356 (359)
..-||.|.+.+
T Consensus 59 ~~~CP~Cr~~~ 69 (85)
T 2ecv_A 59 ESSCPVCRISY 69 (85)
T ss_dssp CCCCTTTCCSS
T ss_pred CCcCCCCCCcc
Confidence 56788887664
No 119
>3hs2_A PHD protein, prevent HOST death protein; intrinsic disorder, DOC, toxin-anti antitoxin; 2.20A {Enterobacteria phage P1}
Probab=21.40 E-value=37 Score=23.94 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=34.9
Q ss_pred hhhhhhccchhhhHhhheeEeEEEe-ecceeeccCCCCChhhHHHHHHHhcccccc
Q 018197 131 TSLETRTRFPELVIQEEKRVRFVVV-NGLDIVEKPNNMPIEDAEWFKRLTGRNEVA 185 (359)
Q Consensus 131 ts~etrt~fpelv~~EekrvrfvVV-nGl~IVE~p~Nlp~eDqewfkRLtgr~EVa 185 (359)
+.-|.|+.|.+++++=...=.++|+ +|=.++-+ +|.+|.+.|....-..|.+
T Consensus 5 ~~~ear~~l~~ll~~v~~~e~v~Itr~g~~~avl---vs~~~y~~l~e~~~~~e~~ 57 (58)
T 3hs2_A 5 NFRTARGNLSEVLNNVEAGEEVEITRRGREPAVI---VSKATFEAYKKAALDAEFA 57 (58)
T ss_dssp EHHHHHHSHHHHHHHHHTTCCEEEECTTSCCEEE---EEHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHhHHHHHHHHhCCCcEEEEECCCceEEE---ecHHHHHHHHHhhhhhhhc
Confidence 5678999999999874344445555 45434442 7888888888777666654
No 120
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=21.38 E-value=40 Score=26.01 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=17.8
Q ss_pred CCCCCCCCcCCCCCCCCC-------CCCCcccCC
Q 018197 328 ASPAKFCDECGAPYLRET-------SKFCSECGV 354 (359)
Q Consensus 328 ~~~sKFCpeCGt~l~~~~-------AKFCpECGt 354 (359)
......|..||+.--+.| .--|.-||-
T Consensus 5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl 38 (71)
T 2kae_A 5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFI 38 (71)
T ss_dssp ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHH
T ss_pred CCCCCcCCccCCCCCCccccCCCCCCccchHHHH
Confidence 345788999999863333 356999985
No 121
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=21.13 E-value=45 Score=25.20 Aligned_cols=27 Identities=19% Similarity=0.586 Sum_probs=19.2
Q ss_pred CCCCCCCcCCCCCC------CCCCCCCcccCCc
Q 018197 329 SPAKFCDECGAPYL------RETSKFCSECGVK 355 (359)
Q Consensus 329 ~~sKFCpeCGt~l~------~~~AKFCpECGtK 355 (359)
...+.|..||+.-- +.+.-.|.-||-.
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~ 37 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLY 37 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHH
T ss_pred CCCCcCCCcCCCCCCccCCCCCCCchhhHHHHH
Confidence 44678999999862 2345679999853
No 122
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=21.09 E-value=18 Score=31.21 Aligned_cols=10 Identities=40% Similarity=1.059 Sum_probs=7.4
Q ss_pred CCCcccCCcC
Q 018197 347 KFCSECGVKR 356 (359)
Q Consensus 347 KFCpECGtKr 356 (359)
-||+.||+.+
T Consensus 99 ~FC~~CGs~l 108 (196)
T 1x6m_A 99 HRCRDCGVHM 108 (196)
T ss_dssp EEETTTCCEE
T ss_pred EECCCCCCcC
Confidence 5888888764
No 123
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=20.98 E-value=50 Score=28.68 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=7.1
Q ss_pred CCCCCcCCCCC
Q 018197 331 AKFCDECGAPY 341 (359)
Q Consensus 331 sKFCpeCGt~l 341 (359)
..-||.||..-
T Consensus 137 ~~~Cp~C~~~~ 147 (178)
T 3po3_S 137 RFTCGKCKEKK 147 (178)
T ss_dssp SSCCSSSCCSC
T ss_pred CcCCCCCCCCc
Confidence 34588887663
No 124
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=20.95 E-value=23 Score=28.31 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=15.6
Q ss_pred CCCCCcCCCCCCCCCCCCCcccCCc
Q 018197 331 AKFCDECGAPYLRETSKFCSECGVK 355 (359)
Q Consensus 331 sKFCpeCGt~l~~~~AKFCpECGtK 355 (359)
-+-|-+|+.-+.. .-||+||..
T Consensus 23 ~rAC~~C~~v~~~---d~CPnCgs~ 44 (81)
T 3p8b_A 23 EKACRHCHYITSE---DRCPVCGSR 44 (81)
T ss_dssp CEEETTTCBEESS---SSCTTTCCC
T ss_pred HHHHhhCCCccCC---CCCCCCCCC
Confidence 3559999877543 359999864
No 125
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=20.93 E-value=40 Score=27.93 Aligned_cols=31 Identities=26% Similarity=0.677 Sum_probs=16.4
Q ss_pred cCCCCCCCCCCcCCCCCCC---------CCCCCCcccCCc
Q 018197 325 VMPASPAKFCDECGAPYLR---------ETSKFCSECGVK 355 (359)
Q Consensus 325 i~p~~~sKFCpeCGt~l~~---------~~AKFCpECGtK 355 (359)
.+|......|..|++++-. =|.-||..|-.+
T Consensus 13 ~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 13 PSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp -------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC
T ss_pred CcCccccCcccCcCCccccccccccCCCCCCeeCHHHhCC
Confidence 3466677789999988731 246677777554
No 126
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=20.56 E-value=29 Score=25.42 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=15.5
Q ss_pred CCCCCCcCCCCCCCCCCCCCcccCC
Q 018197 330 PAKFCDECGAPYLRETSKFCSECGV 354 (359)
Q Consensus 330 ~sKFCpeCGt~l~~~~AKFCpECGt 354 (359)
+--.|++||+.... -.-|++ |.
T Consensus 26 ~l~~c~~cGe~~l~--H~vc~~-G~ 47 (56)
T 3r8s_0 26 SLSVDKTSGEKHLR--HHITAD-GY 47 (56)
T ss_dssp CEEECTTTCCEEET--TBCCTT-SE
T ss_pred ceeECCCCCCeecc--cEECCC-Ce
Confidence 34569999998653 466887 64
No 127
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=20.45 E-value=35 Score=25.45 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=17.6
Q ss_pred chhHHHHhhC-CCCCccceehhhhhhhhh
Q 018197 107 GLYRSLAKKF-PKKGSCTYKRRELATSLE 134 (359)
Q Consensus 107 glyr~l~kkf-pkkg~c~fkRRElAts~e 134 (359)
.-||+|+++| |.+|.-.-+=.+|..+-+
T Consensus 32 ~aYr~la~~~HPDk~~~~~~f~~i~~AYe 60 (79)
T 1faf_A 32 QAYKQQSLLLHPDKGGSHALMQELNSLWG 60 (79)
T ss_dssp HHHHHHHHHSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCHHHHHHHHHHHH
Confidence 4599999996 888754433334444433
No 128
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=20.28 E-value=27 Score=36.00 Aligned_cols=27 Identities=30% Similarity=0.655 Sum_probs=0.8
Q ss_pred CCCCCCcCCCCCCC--C--CCCCCcc---cCCcC
Q 018197 330 PAKFCDECGAPYLR--E--TSKFCSE---CGVKR 356 (359)
Q Consensus 330 ~sKFCpeCGt~l~~--~--~AKFCpE---CGtKr 356 (359)
-+..||.||+++.. + ..-+|++ |-.++
T Consensus 414 ~P~~CP~Cgs~l~~~~~~~~~~rC~n~~~CpaQ~ 447 (615)
T 3sgi_A 414 MPTTCPECGSPLAPEKEGDADIRCPNARGCPGQL 447 (615)
T ss_dssp CC--------------------------------
T ss_pred CCCCCCCCCCeeeecCCCCEEEEcCCCCCCHHHH
Confidence 34669999999864 2 2679986 76654
No 129
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=20.00 E-value=28 Score=31.16 Aligned_cols=8 Identities=13% Similarity=-0.176 Sum_probs=3.7
Q ss_pred CCcccCCc
Q 018197 348 FCSECGVK 355 (359)
Q Consensus 348 FCpECGtK 355 (359)
-|..||.+
T Consensus 153 ~~d~~g~~ 160 (230)
T 3gmt_A 153 KDDVTGEP 160 (230)
T ss_dssp BCTTTCCB
T ss_pred cCCCccCc
Confidence 34555543
Done!