BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018198
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 237 bits (604), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 126/226 (55%), Positives = 159/226 (70%), Gaps = 9/226 (3%)
Query: 140 FVGSQPCKLQMDELETIRIFEENISSVVWIGNLGIREDQSETEFL---RGSGAGFLWDQD 196
FV S P KLQ DEL T+R+F+EN SVV+I NL +R+D + L +GSG+GF+WD+
Sbjct: 4 FVVSTPKKLQTDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDKQ 63
Query: 197 GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSA 256
GHIVTNYHVI GAS ++V+ +DQ+TF A+VVG DQ D+AVL IDAP ++LRPI V VSA
Sbjct: 64 GHIVTNYHVIRGASDLRVTLADQTTFDAKVVGFDQDKDVAVLRIDAPKNKLRPIPVGVSA 123
Query: 257 DLRVGKKIYAIGHPLGWSFTCTTGVISALDREIP----GRLIQGVIQIDASVNXXXXXXX 312
DL VG+K++AIG+P G T TTGVIS L REI GR IQ VIQ DA++N
Sbjct: 124 DLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGP 183
Query: 313 XXXXXXXXIGVNTFI--TSGAFSGIGFALPIDTVRGIVDQLVKFSR 356
IG+NT I SGA SG+GF++P+DTV GIVDQLV+F +
Sbjct: 184 LLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGK 229
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 119/220 (54%), Gaps = 19/220 (8%)
Query: 145 PCKLQMDELETIRI------FEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGH 198
P +++D ++T++ FE+ W G L ++ G+GF++D +G+
Sbjct: 15 PAVVKIDVVKTVKTSFFDPYFEQFFKK--WFGELPPGFERQVASL----GSGFIFDPEGY 68
Query: 199 IVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADL 258
I+TNYHV+ GA + V+ D S + A+ +G D+ D+AV+ I A + + + S +
Sbjct: 69 ILTNYHVVGGADNITVTMLDGSKYDAEYIGGDEELDIAVIKIKASDKKFPYLEFGDSDKV 128
Query: 259 RVGKKIYAIGHPLGWSFTCTTGVISALDREIP-----GRLIQGVIQIDASVNXXXXXXXX 313
++G+ AIG+PLG+ T T GV+SA +R IP G + G+IQ DA++N
Sbjct: 129 KIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYV-GLIQTDAAINPGNSGGPL 187
Query: 314 XXXXXXXIGVNTFITSGAFS-GIGFALPIDTVRGIVDQLV 352
IG+NT I + + +GFA+PI+TV+ +D ++
Sbjct: 188 LNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTIL 227
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%)
Query: 188 GAGFLWDQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
G+G + D D G++VTN HV+ A+ +KV SD F A++VG D +D+A++ I P +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 247 LRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRLIQGVIQIDASVN 305
L I ++ S LRVG AIG+P G T T+G++SAL R + + IQ DA++N
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 306 XXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSR 356
IG+NT I + G GIGFA+P + V+ + Q+V++ +
Sbjct: 207 RGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQ 259
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%)
Query: 188 GAGFLWDQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
G+G + D D G++VTN HV+ A+ +KV SD F A++VG D +D+A++ I P +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 247 LRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRLIQGVIQIDASVN 305
L I ++ S LRVG AIG+P G T T+G++SAL R + + IQ DA++N
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 306 XXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSR 356
IG+NT I + G GIGFA+P + V+ + Q+V++ +
Sbjct: 207 RGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQ 259
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%)
Query: 188 GAGFLWDQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
G+G + D D G++VTN HV+ A+ +KV SD F A++VG D +D+A++ I P +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 247 LRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRLIQGVIQIDASVN 305
L I ++ S LRVG AIG+P G T T+G++SAL R + + IQ DA++N
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 306 XXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSR 356
IG+NT I + G GIGFA+P + V+ + Q+V++ +
Sbjct: 207 RGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQ 259
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%)
Query: 188 GAGFLWDQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
G+G + D D G++VTN HV+ A+ +KV SD F A++VG D +D+A++ I P +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 247 LRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRLIQGVIQIDASVN 305
L I ++ S LRVG AIG+P G T T+G++SAL R + + IQ DA++N
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 306 XXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSR 356
IG+NT I + G GIGFA+P + V+ + Q+V++ +
Sbjct: 207 RGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQ 259
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%)
Query: 188 GAGFLWDQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
G+G + D D G++VTN HV+ A+ +KV SD F A++VG D +D+A++ I P +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 247 LRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRLIQGVIQIDASVN 305
L I ++ S LRVG AIG+P G T T+G++SAL R + + IQ DA++N
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 306 XXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSR 356
IG+NT I + G GIGFA+P + V+ + Q+V++ +
Sbjct: 207 RGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQ 259
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 5/173 (2%)
Query: 188 GAGFLWDQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
G+G + D D G++VTN HV+ A+ +KV SD F A+ VG D +D+A++ I P +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPKN- 146
Query: 247 LRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRLIQGVIQIDASVN 305
L I + S LRVG AIG+P G T T+G++SAL R + + IQ DA++N
Sbjct: 147 LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 306 XXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSR 356
IG+NT I + G GIGFA+P + V+ + Q V++ +
Sbjct: 207 RGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQ 259
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 5/173 (2%)
Query: 188 GAGFLWDQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
G+G + D D G++VTN HV+ A+ +KV SD F A+ VG D +D+A++ I P +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPKN- 146
Query: 247 LRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRLIQGVIQIDASVN 305
L I + S LRVG AIG+P G T T+G++SAL R + + IQ DA++N
Sbjct: 147 LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 306 XXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSR 356
IG+NT I + G GIGFA+P + V+ + Q V++ +
Sbjct: 207 RGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQ 259
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 5/173 (2%)
Query: 188 GAGFLWDQD-GHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
G+G + D D G++VTN HV+ A+ +KV SD F A+ VG D +D+A++ I P +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPKN- 146
Query: 247 LRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE-IPGRLIQGVIQIDASVN 305
L I + S LRVG AIG+P G T T+G++SAL R + + IQ DA++N
Sbjct: 147 LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 306 XXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKFSR 356
IG+NT I + G GIGFA+P + V+ + Q V++ +
Sbjct: 207 RGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQ 259
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 104/206 (50%), Gaps = 28/206 (13%)
Query: 180 ETEFLRGS--GAGFLWDQDGHIVTNYHVICGAST---------VKVSFSDQSTFYAQVVG 228
ET+ R S G+G + +G I+TN HVI A+ V+FSD T VVG
Sbjct: 23 ETDLGRQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTAPFTVVG 82
Query: 229 HDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDRE 288
D +D+AV+ + + L PI + S+DLRVG+ + AIG PLG T TTG++SAL+R
Sbjct: 83 ADPTSDIAVVRVQGVSG-LTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRP 141
Query: 289 IPGRLIQG-------VIQIDASVNXXXXXXXXXXXXXXXIGVNTFI-TSGAFS------- 333
+ G IQ DA++N +GVN+ I T GA S
Sbjct: 142 VSTTGEAGNQNTVLDAIQTDAAINPGNSGGALVNXNAQLVGVNSAIATLGADSADAQSGS 201
Query: 334 -GIGFALPIDTVRGIVDQLVKFSRYC 358
G+GFA+P+D + I D+L+ +
Sbjct: 202 IGLGFAIPVDQAKRIADELISTGKAS 227
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 10/184 (5%)
Query: 177 DQSETEFLRGSGAGFLWD-QDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDL 235
DQ F G G+G + + G+++TN HVI A + + +D F A+++G D +D+
Sbjct: 55 DQPAQPF-EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDI 113
Query: 236 AVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQ 295
A+L I P+ +L I ++ S LRVG A+G+P G T T+G++SAL R G ++
Sbjct: 114 ALLQIQNPS-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRS--GLNLE 170
Query: 296 GV---IQIDASVNXXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQ 350
G+ IQ DAS+N IG+NT I + G GIGFA+P + R + Q
Sbjct: 171 GLENFIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQ 230
Query: 351 LVKF 354
L+ F
Sbjct: 231 LIDF 234
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 10/184 (5%)
Query: 177 DQSETEFLRGSGAGFLWD-QDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDL 235
DQ F G G+G + + G+++TN HVI A + + +D F A+++G D +D+
Sbjct: 55 DQPAQPF-EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDI 113
Query: 236 AVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQ 295
A+L I P+ +L I ++ S LRVG A+G+P G T T+G++SAL R G ++
Sbjct: 114 ALLQIQNPS-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRS--GLNLE 170
Query: 296 GV---IQIDASVNXXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQ 350
G+ IQ DAS+N IG+NT I + G GIGFA+P + R + Q
Sbjct: 171 GLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQ 230
Query: 351 LVKF 354
L+ F
Sbjct: 231 LIDF 234
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 10/186 (5%)
Query: 177 DQSETEFLRGSGAGFLWD-QDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDL 235
DQ F G G+G + + G+++TN HVI A + + +D F A+++G D +D+
Sbjct: 55 DQPAQPF-EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDI 113
Query: 236 AVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLIQ 295
A+L I P+ +L I ++ S LRVG A+G+P G T T+G++SAL R G ++
Sbjct: 114 ALLQIQNPS-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRS--GLNLE 170
Query: 296 GV---IQIDASVNXXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQ 350
G+ IQ DAS+N IG+NT I + G GIGFA+P + R + Q
Sbjct: 171 GLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQ 230
Query: 351 LVKFSR 356
L+ F
Sbjct: 231 LIDFGE 236
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 15/178 (8%)
Query: 188 GAGFLWD-QDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
G+G + D +G I+TN HVI AS + V+ D A+++G D DLAVL IDA N
Sbjct: 79 GSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKN-- 136
Query: 247 LRPIHVSVSADLRVGKKIYAIGHPLGW-----SFTCTTGVISALDR---EIPGRLIQGVI 298
L+ + + S L VG + AIG+P G S + T G++SAL R I G ++ I
Sbjct: 137 LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEG--VENFI 194
Query: 299 QIDASVNXXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKF 354
Q DA++N IG+NT I S G GIGFA+PI+ V+ + Q++KF
Sbjct: 195 QTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKF 252
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 15/178 (8%)
Query: 188 GAGFLWD-QDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
G+G + D +G I+TN HVI AS + V+ D A+++G D DLAVL IDA N
Sbjct: 79 GSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKN-- 136
Query: 247 LRPIHVSVSADLRVGKKIYAIGHPLGW-----SFTCTTGVISALDR---EIPGRLIQGVI 298
L+ + + S L VG + AIG+P G S + T G++SAL R I G ++ I
Sbjct: 137 LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEG--VENFI 194
Query: 299 QIDASVNXXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKF 354
Q DA++N IG+NT I S G GIGFA+PI+ V+ + Q++KF
Sbjct: 195 QTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKF 252
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 15/178 (8%)
Query: 188 GAGFLWD-QDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
G+G + D +G I+TN HVI AS + V+ D A+++G D DLAVL IDA N
Sbjct: 79 GSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKN-- 136
Query: 247 LRPIHVSVSADLRVGKKIYAIGHPLGW-----SFTCTTGVISALDR---EIPGRLIQGVI 298
L+ + + S L VG + AIG+P G S + T G++SAL R I G ++ I
Sbjct: 137 LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEG--VENFI 194
Query: 299 QIDASVNXXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKF 354
Q DA++N IG+NT I S G GIGFA+PI+ V+ + Q++KF
Sbjct: 195 QTDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKF 252
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 95/178 (53%), Gaps = 15/178 (8%)
Query: 188 GAGFLWD-QDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHE 246
G+G + D +G I+TN HVI AS + V+ D A+++G D DLAVL IDA N
Sbjct: 79 GSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKN-- 136
Query: 247 LRPIHVSVSADLRVGKKIYAIGHPLGW-----SFTCTTGVISALDR---EIPGRLIQGVI 298
L+ + + S L VG + AIG+P G S + T G++SAL R I G ++ I
Sbjct: 137 LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEG--VENFI 194
Query: 299 QIDASVNXXXXXXXXXXXXXXXIGVNTFITS--GAFSGIGFALPIDTVRGIVDQLVKF 354
Q DA++ IG+NT I S G GIGFA+PI+ V+ + Q++KF
Sbjct: 195 QTDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKF 252
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 97/200 (48%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 42 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 101
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 102 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 160
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q +Q DAS+N +G+NT F S GIG
Sbjct: 161 TGRIGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIG 218
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 219 FAIPFQLATKIMDKLIRDGR 238
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 97/200 (48%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 42 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 101
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 102 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPANLGQTITQGIISA 160
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q +Q DAS+N +G+NT F S GIG
Sbjct: 161 TGRIGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIG 218
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 219 FAIPFQLATKIMDKLIRDGR 238
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 97/200 (48%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 44 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 103
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 104 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 162
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q +Q DAS+N +G+NT F S GIG
Sbjct: 163 TGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIG 220
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 221 FAIPFQLATKIMDKLIRDGR 240
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 97/200 (48%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 42 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 101
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 102 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPANLGQTITQGIISA 160
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q +Q DAS+N +G+NT F S GIG
Sbjct: 161 TGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIG 218
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 219 FAIPFQLATKIMDKLIRDGR 238
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 98/200 (49%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 42 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 101
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 102 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 160
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q +Q DAS+N +G+NT F S GIG
Sbjct: 161 TGRIGLNPTGR--QNFLQTDASINHGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIG 218
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 219 FAIPFQLATKIMDKLIRDGR 238
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 98/200 (49%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 42 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 101
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 102 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 160
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q +Q DAS+N +G+NT F S GIG
Sbjct: 161 TGRIGLNPTGR--QNFLQTDASINPGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIG 218
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 219 FAIPFQLATKIMDKLIRDGR 238
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 97/200 (48%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 32 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 91
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 92 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 150
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q +Q DAS+N +G+NT F S GIG
Sbjct: 151 TGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIG 208
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 209 FAIPFQLATKIMDKLIRDGR 228
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 98/200 (49%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 44 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 103
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 104 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 162
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q +Q DAS+N +G+NT F S GIG
Sbjct: 163 TGRIGLNPTGR--QNFLQTDASINHGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIG 220
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 221 FAIPFQLATKIMDKLIRDGR 240
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 97/200 (48%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 16 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 75
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 76 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 134
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q +Q DAS+N +G+NT F S GIG
Sbjct: 135 TGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIG 192
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 193 FAIPFQLATKIMDKLIRDGR 212
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 96/197 (48%), Gaps = 11/197 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 16 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 75
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 76 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 134
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q +Q DAS+N +G+NT F S GIG
Sbjct: 135 TGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIG 192
Query: 337 FALPIDTVRGIVDQLVK 353
FA+P I+D+L++
Sbjct: 193 FAIPFQLATKIMDKLIR 209
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 96/200 (48%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 42 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 101
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T G+ISA
Sbjct: 102 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQVITQGIISA 160
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q +Q DAS+N +G+NT F S GIG
Sbjct: 161 TGRIGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIG 218
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 219 FAIPFQLATKIMDKLIRDGR 238
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 97/200 (48%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 44 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 103
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVIS- 283
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+IS
Sbjct: 104 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 162
Query: 284 --ALDREIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
A+ GR Q +Q DAS+N +G+NT F S GIG
Sbjct: 163 TGAIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIG 220
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 221 FAIPFQLATKIMDKLIRDGR 240
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 97/200 (48%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 42 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 101
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVIS- 283
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+IS
Sbjct: 102 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 160
Query: 284 --ALDREIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
A+ GR Q +Q DAS+N +G+NT F S GIG
Sbjct: 161 TGAIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIG 218
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 219 FAIPFQLATKIMDKLIRDGR 238
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 96/200 (48%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 42 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 101
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 102 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 160
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q + DAS+N +G+NT F S GIG
Sbjct: 161 TGRIGLNPTGR--QNFLATDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIG 218
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 219 FAIPFQLATKIMDKLIRDGR 238
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 96/200 (48%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 44 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 103
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 104 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 162
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q + DAS+N +G+NT F S GIG
Sbjct: 163 TGRIGLNPTGR--QNFLATDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIG 220
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 221 FAIPFQLATKIMDKLIRDGR 240
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 95/200 (47%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 44 AVVNVYNRGLNTNSHNQLEIRTLGSGVIXDQRGYIITNKHVINDADQIIVALQDGRVFEA 103
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 104 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 162
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q +Q DAS+N G+NT F S GIG
Sbjct: 163 TGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELXGINTLSFDKSNDGETPEGIG 220
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I D+L++ R
Sbjct: 221 FAIPFQLATKIXDKLIRDGR 240
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 96/200 (48%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 21 AVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEA 80
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I A L I ++ +G + AIG+P T T G+ISA
Sbjct: 81 LLVGSDSLTDLAVLIIKA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 139
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q +Q DAS+N +G+NT F S GIG
Sbjct: 140 TGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIG 197
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I+D+L++ R
Sbjct: 198 FAIPFQLATKIMDKLIRDGR 217
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 95/200 (47%), Gaps = 11/200 (5%)
Query: 165 SVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYA 224
+VV + N G+ + +R G+G + DQ G+I+TN HVI A + V+ D F A
Sbjct: 16 AVVNVYNRGLNTNSHNQLEIRTLGSGVIXDQRGYIITNKHVINDADQIIVALQDGRVFEA 75
Query: 225 QVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISA 284
+VG D + DLAVL I+A L I ++ +G + AIG+P T T G+ISA
Sbjct: 76 LLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA 134
Query: 285 LDR---EIPGRLIQGVIQIDASVNXXXXXXXXXXXXXXXIGVNT--FITSG---AFSGIG 336
R GR Q +Q DAS+N G+NT F S GIG
Sbjct: 135 TGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELXGINTLSFDKSNDGETPEGIG 192
Query: 337 FALPIDTVRGIVDQLVKFSR 356
FA+P I D+L++ R
Sbjct: 193 FAIPFQLATKIXDKLIRDGR 212
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 179 SETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVL 238
S+ E SG+GF+ +DG IVTN HV+ VKV + +T+ A++ D+ D+A++
Sbjct: 39 SKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALI 98
Query: 239 HIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLI---- 294
ID +L + + S++LR G+ + AIG P T TTG++S R G+ +
Sbjct: 99 KIDH-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRG--GKELGLRN 155
Query: 295 --QGVIQIDASVNXXXXXXXXXXXXXXXIGVNTFITSGAFSGIGFALPIDTVR 345
IQ DA +N IG+NT + +GI FA+P D ++
Sbjct: 156 SDMDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVT---AGISFAIPSDKIK 205
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 179 SETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVL 238
S+ E SG+GF+ +DG IVTN HV+ VKV + +T+ A++ D+ D+A++
Sbjct: 39 SKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALI 98
Query: 239 HIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLI---- 294
ID +L + + S++LR G+ + AIG P T TTG++S R G+ +
Sbjct: 99 KIDH-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRG--GKELGLRN 155
Query: 295 --QGVIQIDASVNXXXXXXXXXXXXXXXIGVNTFITSGAFSGIGFALPIDTVR 345
IQ DA +N IG+NT + +GI FA+P D ++
Sbjct: 156 SDMDYIQTDAIINYGNSGGPLVNLDGEVIGINTLKVT---AGISFAIPSDKIK 205
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 179 SETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVL 238
S+ E SG+GF+ +DG IVTN HV+ VKV + +T+ A++ D+ D+A++
Sbjct: 39 SKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALI 98
Query: 239 HIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLI---- 294
ID +L + + S++LR G+ + AIG P T TTG++S R G+ +
Sbjct: 99 KIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQR--GGKELGLRN 155
Query: 295 --QGVIQIDASVNXXXXXXXXXXXXXXXIGVNTFITSGAFSGIGFALPIDTVR 345
IQ DA +N IG+NT + +GI FA+P D ++
Sbjct: 156 SDMDYIQTDAIINYGNSGGPLVNLDGEVIGINTLKVT---AGISFAIPSDKIK 205
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 179 SETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVL 238
S+ E SG+GF+ +DG IVTN HV+ VKV + +T+ A++ D+ D+A++
Sbjct: 56 SKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALI 115
Query: 239 HIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLI---- 294
ID +L + + S++LR G+ + AIG P T TTG++S R G+ +
Sbjct: 116 KIDH-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRG--GKELGLRN 172
Query: 295 --QGVIQIDASVNXXXXXXXXXXXXXXXIGVNTFITSGAFSGIGFALPIDTVR 345
IQ DA +N IG+NT + +GI FA+P D ++
Sbjct: 173 SDMDYIQTDAIINYGNSGGPLVNLDGEVIGINTLKVT---AGISFAIPSDKIK 222
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 179 SETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVL 238
S+ E SG+GF+ +DG IVTN HV+ VKV + +T+ A++ D+ D+A++
Sbjct: 56 SKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALI 115
Query: 239 HIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVISALDREIPGRLI---- 294
ID +L + + S++LR G+ + AIG P T TTG++S R G+ +
Sbjct: 116 KIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRG--GKELGLRN 172
Query: 295 --QGVIQIDASVNXXXXXXXXXXXXXXXIGVNTFITSGAFSGIGFALPIDTVR 345
IQ DA +N IG+NT + +GI FA+P D ++
Sbjct: 173 SDMDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVT---AGISFAIPSDKIK 222
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 13/194 (6%)
Query: 158 IFEENISSVVWIGNLGIREDQSETEFLRGSGAGFLWDQDGHIVTNYHVICGASTVKVSFS 217
+ E+ +VV+I L R E +G+GF+ DG IVTN HV+ V+V
Sbjct: 20 VVEKTAPAVVYIEILD-RHPFLGREVPISNGSGFVVAADGLIVTNAHVVADRRRVRVRLL 78
Query: 218 DQSTFYAQVVGHDQVNDLAVLHIDAPNHELRPIHVSVSADLRVGKKIYAIGHPLGWSFTC 277
T+ A V D V D+A L I L + + SAD+R G+ + A+G P T
Sbjct: 79 SGDTYEAVVTAVDPVADIATLRIQT-KEPLPTLPLGRSADVRQGEFVVAMGSPFALQNTI 137
Query: 278 TTGVISALDREIPGR---LIQG---VIQIDASVNXXXXXXXXXXXXXXXIGVNTFITSGA 331
T+G++S+ R P R L Q IQ DA+++ IGVNT +
Sbjct: 138 TSGIVSSAQR--PARDLGLPQTNVEYIQTDAAIDFGNAGGPLVNLDGEVIGVNTMKVT-- 193
Query: 332 FSGIGFALPIDTVR 345
+GI FA+P D +R
Sbjct: 194 -AGISFAIPSDRLR 206
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGI 57
MSPV+ RPLE GA IVMHSA+KFIA HSDVMA +AV E++ + + + SG+
Sbjct: 257 MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGL 313
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNS----ERVQ 43
+SP + PL FGA IV+HSA+K+I HSDV+ +A N+ ER+Q
Sbjct: 182 LSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQ 228
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRI 61
SP L+PLE GA I +HS SK+I H DV+ G++ TI + D +++ +
Sbjct: 185 SPCFLKPLELGADIALHSVSKYINGHGDVIG-GVSSAKTAEDIATIKFYRKDAGSLMAPM 243
Query: 62 DGVFTRR 68
D R
Sbjct: 244 DAFLCAR 250
>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|B Chain B, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|C Chain C, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|D Chain D, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|3COG|A Chain A, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|B Chain B, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|C Chain C, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|D Chain D, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
Length = 403
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESG-ILS 59
MSP RPL GA I M+SA+K++ HSDV+ ++VN E + H F+ + G + S
Sbjct: 192 MSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESL--HNRLRFLQNSLGAVPS 249
Query: 60 RIDGVFTRR 68
ID R
Sbjct: 250 PIDCYLCNR 258
>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase
pdb|3ELP|A Chain A, Structure Of Cystationine Gamma Lyase
pdb|3ELP|C Chain C, Structure Of Cystationine Gamma Lyase
pdb|3ELP|D Chain D, Structure Of Cystationine Gamma Lyase
Length = 410
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESG-ILS 59
MSP RPL GA I M+SA+K++ HSDV+ ++VN E + H F+ + G + S
Sbjct: 196 MSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESL--HNRLRFLQNSLGAVPS 253
Query: 60 RIDGVFTRR 68
ID R
Sbjct: 254 PIDCYLCNR 262
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDESGILSRI 61
SP L+PLE GA I +HS S +I H DV+ G++ TI + D +++ +
Sbjct: 185 SPCFLKPLELGADIALHSVSXYINGHGDVIG-GVSSAKTAEDIATIKFYRKDAGSLMAPM 243
Query: 62 DGVFTRR 68
D R
Sbjct: 244 DAFLCAR 250
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE 40
+P + RPLE GA +V+HSA+K+++ H D+ A GI V S+
Sbjct: 191 TPYLQRPLELGADLVVHSATKYLSGHGDITA-GIVVGSQ 228
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 188 GAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHEL 247
G GF+ D ++TN HV+ G++ V V D+ F A VV +D D+A+L A H
Sbjct: 60 GTGFVISPD-RVMTNAHVVAGSNNVTVYAGDKP-FEATVVSYDPSVDVAIL---AVPHLP 114
Query: 248 RPIHVSVSADLRVGKKIYAIGHPLGWSFTCTTGVI 282
P V + + G + +G+P G +FT T I
Sbjct: 115 PPPLVFAAEPAKTGADVVVLGYPGGGNFTATPARI 149
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 188 GAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHEL 247
G GF+ D ++TN HV+ G++ V V D+ F A VV +D D+A+L A H
Sbjct: 42 GTGFVISPD-RVMTNAHVVAGSNNVTVYAGDKP-FEATVVSYDPSVDVAIL---AVPHLP 96
Query: 248 RPIHVSVSADLRVGKKIYAIGHPLGWSFTCT 278
P V + + G + +G+P G +FT T
Sbjct: 97 PPPLVFAAEPAKTGADVVVLGYPGGGNFTAT 127
>pdb|3LT3|A Chain A, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
pdb|3LT3|B Chain B, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
Length = 217
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 188 GAGFLWDQDGHIVTNYHVICGASTVKVSFSDQSTFYAQVVGHDQVNDLAVLHIDAPNHEL 247
G GF+ D ++TN HV+ G++ V V D+ F A VV +D D+A+L A H
Sbjct: 40 GTGFVISPD-RVMTNAHVVAGSNNVTVYAGDKP-FEATVVSYDPSVDVAIL---AVPHLP 94
Query: 248 RPIHVSVSADLRVGKKIYAIGHPLGWSFTCT 278
P V + + G + +G+P G +FT T
Sbjct: 95 PPPLVFAAEPAKTGADVVVLGYPGGGNFTAT 125
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 4/46 (8%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAV---NSERVQR 44
SP++ RPL GA +V+HSA+K++ HSD M GIAV N+E ++
Sbjct: 193 SPMLQRPLSLGADLVVHSATKYLNGHSD-MVGGIAVVGDNAELAEQ 237
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%), Gaps = 3/38 (7%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMA---CGIA 36
SP++ P++FG +V+HSA+K+I H+DV+A CG A
Sbjct: 189 SPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKA 226
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQR 44
SP + +PL GA +V+HS + +I HSDV+ + N E + +
Sbjct: 192 SPALQQPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQ 234
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE 40
+P + RPLE GA +V+HSA+ +++ H D+ A GI V S+
Sbjct: 191 TPYLQRPLELGADLVVHSATXYLSGHGDITA-GIVVGSQ 228
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSE 40
+P + RPLE GA +V+HSA+ +++ H D+ A GI V S+
Sbjct: 191 TPYLQRPLELGADLVVHSATXYLSGHGDITA-GIVVGSQ 228
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMA 32
SP++ PL+ G IV+HSA+K+I H+DV+A
Sbjct: 125 SPILTNPLDLGVDIVVHSATKYINGHTDVVA 155
>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase-
Small Subunit From Nitrosomonas Europaea
pdb|2PC6|B Chain B, Crystal Structure Of Putative Acetolactate Synthase-
Small Subunit From Nitrosomonas Europaea
pdb|2PC6|C Chain C, Crystal Structure Of Putative Acetolactate Synthase-
Small Subunit From Nitrosomonas Europaea
pdb|2PC6|D Chain D, Crystal Structure Of Putative Acetolactate Synthase-
Small Subunit From Nitrosomonas Europaea
Length = 165
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGV 77
RH IS+ +E+G LSR+ G+F+ R NIESL V
Sbjct: 4 RHIISLLXENEAGALSRVAGLFSARGYNIESLSV 37
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDE---SGI 57
MSP +PL+ GA IV+HS +K+I H DV+ I E + + + FVG + G
Sbjct: 189 MSPYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQ---ARFVGLKDITGGX 245
Query: 58 LSRIDGVFTRRNCNIESLGV 77
+S + T R +++LG+
Sbjct: 246 MSPFNAWLTLR--GVKTLGI 263
>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
pdb|2F1F|B Chain B, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
Length = 164
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 44 RHTISVFVGDESGILSRIDGVFTRRNCNIESLGV 77
R +SV + +ESG LSR+ G+F++R NIESL V
Sbjct: 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTV 36
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDE---SGI 57
MSP +PL+ GA IV+HS + +I H DV+ I E + + + FVG + G
Sbjct: 189 MSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQ---ARFVGLKDITGGC 245
Query: 58 LSRIDGVFTRRNCNIESLGV 77
+S + T R +++LG+
Sbjct: 246 MSPFNAWLTLR--GVKTLGI 263
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDE---SGI 57
MSP +PL+ GA IV+HS + +I H DV+ I E + + + FVG + G
Sbjct: 189 MSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQ---ARFVGLKDITGGC 245
Query: 58 LSRIDGVFTRRNCNIESLGV 77
+S + T R +++LG+
Sbjct: 246 MSPFNAWLTLR--GVKTLGI 263
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDE---SGI 57
MSP +PL+ GA IV+HS + +I H DV+ I E + + + FVG + G
Sbjct: 189 MSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQ---ARFVGLKDITGGC 245
Query: 58 LSRIDGVFTRRNCNIESLGV 77
+S + T R +++LG+
Sbjct: 246 MSPFNAWLTLR--GVKTLGI 263
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSERVQRHTISVFVGDE---SGI 57
MSP +PL+ GA IV+HS + +I H DV+ I E + + + FVG + G
Sbjct: 189 MSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQ---ARFVGLKDITGGC 245
Query: 58 LSRIDGVFTRRNCNIESLGV 77
+S + T R +++LG+
Sbjct: 246 MSPFNAWLTLR--GVKTLGI 263
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 2 SPVVLRPLEFGAGIVMHSASKFIARHSDVMA 32
+P+ + L GA +V+HSA+KF+ H+DV+A
Sbjct: 241 TPLNQKALALGADLVLHSATKFLGGHNDVLA 271
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMA 32
+SP + PL GA +V+HS + ++ HSDV+A
Sbjct: 177 LSPALQNPLALGADLVLHSCTXYLNGHSDVVA 208
>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
pdb|2CTZ|B Chain B, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
Length = 421
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 1 MSPVVLRPLEFGAGIVMHSASKFIARHSDVMACGI 35
M +LRPL +GA +V HS +K++ H V+A I
Sbjct: 185 MGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAI 219
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 4 VVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSER 41
V+ + L+FG + + +A+K++ HSD M G AV + R
Sbjct: 192 VLFKALDFGIDVSIQAATKYLVGHSDAM-IGTAVCNAR 228
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 4 VVLRPLEFGAGIVMHSASKFIARHSDVMACGIAVNSER 41
V+ + L+FG + + +A+K++ HSD M G AV + R
Sbjct: 212 VLFKALDFGIDVSIQAATKYLVGHSDAM-IGTAVCNAR 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,059,695
Number of Sequences: 62578
Number of extensions: 325909
Number of successful extensions: 785
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 70
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)